RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1059
(512 letters)
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 242 bits (619), Expect = 1e-73
Identities = 160/544 (29%), Positives = 233/544 (42%), Gaps = 66/544 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 69
+D +IVG+ +AG VLA RLS+ + L VL++EAGG D ++P + L Y
Sbjct: 8 YDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFL---MNGPRYD 63
Query: 70 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 128
+R + GK LGGSS++ ++Y RG D++ +A+ G GW YD+
Sbjct: 64 WGFRTEPEPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDV 123
Query: 129 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 188
L YF ++ED V + + HG G P+ + + N I F + ++LG+P D
Sbjct: 124 LPYFKRAEDLLGVGGQDLRTWHGGGG--PLPVSPPRSPNPIARAFIEAGEQLGFPTTPDP 181
Query: 189 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 248
N + GF G R+SAA AYL P KR NL +L ++V ++++ + + A G
Sbjct: 182 NGADQE-GFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILL-EGDRAVG 238
Query: 249 VEYVNSKGETVRVT-ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGE 306
VE G T+ A +EV+L AGAI + +LLLLSGIGP HL E I V L VG+
Sbjct: 239 VEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQ 298
Query: 307 NLK----LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLS----NAGLWSFTGYI 358
NL+ + F + L +YL+ R GP + G
Sbjct: 299 NLQDHLEIYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFVRSGP-- 356
Query: 359 DTLQNTARPDLEIHL--LYFQQNDIRNMYLATLI--------RGT--------------- 393
PD + H L + TL RG+
Sbjct: 357 ----AGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVID 412
Query: 394 -----DYITRLEQTEAIRLAGG-----TLMSLNLEACSQYPWRSTHSWTC-YIRHLTTTT 442
R IRL L + + P +T IR L T
Sbjct: 413 PNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGPRVTTDEDISAAIRFLARTA 472
Query: 443 SNPVGTVMMGNADDPNAVV-TPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCA 501
+P+GT MG DP AVV P L+V G++ LRV D SV+P + + + E+ A
Sbjct: 473 YHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAA 530
Query: 502 DLVK 505
D +
Sbjct: 531 DHIL 534
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 229 bits (586), Expect = 1e-68
Identities = 140/382 (36%), Positives = 194/382 (50%), Gaps = 40/382 (10%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSL----SEFD 65
+D II+GA +AGCVLANRLSE + VLL+EAGG D I M + L+ ++
Sbjct: 6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQ-MPAALAFPLQGKRYN 64
Query: 66 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWG 124
AY EP N R++ GK LGGSS++ ++Y RG + DY+N+A+L G GW
Sbjct: 65 WAYETEPEPHMN----NRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWS 120
Query: 125 YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPC 184
Y + L YF K+E G G L V K N + + E + + GYP
Sbjct: 121 YADCLPYFKKAETR----DGGEDDYRGGDGPLSVTRGKPGTNPLFQAFVE-AGVQAGYPR 175
Query: 185 PKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 244
D+N Y GF + G R+SAA AYL P A KR NL ++ + +++ +
Sbjct: 176 TDDLNG-YQQEGFGPMDRTVTNGRRWSAARAYLDP-ALKRPNLTIVTHALTDRILF-EGK 232
Query: 245 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR- 303
A GVEY G A +EVIL+AGAI + QLL LSGIGP HL E+ IPV DL
Sbjct: 233 RAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPG 291
Query: 304 VGENLK----LNAQF--TGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGP-LSN---AGLW 352
VGENL+ + Q+ PV + A LK +++ + ++L G SN AG
Sbjct: 292 VGENLQDHLEVYIQYECKQPVSLYPA-LK--WWNKPKIGAEWLFTGTGLGASNHFEAG-- 346
Query: 353 SFTGYIDTLQNTARPDLEIHLL 374
G+I + P+++ H L
Sbjct: 347 ---GFIRSRAGVDWPNIQYHFL 365
Score = 68.3 bits (168), Expect = 4e-12
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 434 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAIS 493
++R T +P T MG DP AVV P+ +V G++GLRV D S++P +A +
Sbjct: 463 FVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPT 520
Query: 494 YMIGEKCADLVK 505
MI EK ADL++
Sbjct: 521 IMIAEKAADLIR 532
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 197 bits (501), Expect = 1e-56
Identities = 129/377 (34%), Positives = 183/377 (48%), Gaps = 33/377 (8%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRI---PGMSSVLSLSEFDHA 67
D II+G +AG VLA RLSE S VL++EAGG D P I ++ ++
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 68 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYD 126
Y EP + N R+ GK LGGSS++ ++YQRG DYE +AK G W Y
Sbjct: 61 YETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116
Query: 127 ETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 186
+ L Y+ + E + K G G P+ + + +N + + F + E GY
Sbjct: 117 DCLPYYKRLE----TTFGGEKPYRGHDG--PIKVRRGPADNPLFQAFIEAGVEAGYNKTP 170
Query: 187 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 246
D+N + GF + G R SAA AYL P A KR NL V R+ VTK+ + N A
Sbjct: 171 DVNG-FRQEGFGPMDSTVHNGRRVSAARAYLHP-AMKRPNLEVQTRAFVTKINF-EGNRA 227
Query: 247 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VG 305
TGVE+ G ANKEVIL+AGAI + QLL LSGIG HL E+ I + L VG
Sbjct: 228 TGVEFKKG-GRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVG 286
Query: 306 ENLKLNAQF------TGPVMAFSA--PLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGY 357
ENL+ + + PV + + LK+ + +F R G + + G+
Sbjct: 287 ENLQDHLEVYVQHACKQPVSLYPSLNWLKQPFIGAQWLF----GRKG-AGASNHFEGGGF 341
Query: 358 IDTLQNTARPDLEIHLL 374
+ + + P+++ H L
Sbjct: 342 VRSNDDVDYPNIQYHFL 358
Score = 65.7 bits (160), Expect = 3e-11
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 434 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAIS 493
++R T +P GT MG A D +VV P+ +V G++GLRV D S++P +A
Sbjct: 456 FVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPV 515
Query: 494 YMIGEKCADLVK 505
M+GEK AD+++
Sbjct: 516 IMMGEKAADIIR 527
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 172 bits (437), Expect = 8e-48
Identities = 135/515 (26%), Positives = 211/515 (40%), Gaps = 52/515 (10%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG------GDTPIHSRIPGMSSVLSLSEFD 65
D+++VG +AGCV+A RLSE S V ++EAG P + S
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 66 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 125
Y + R + I G+ LGGS AV + R D++ + GW +
Sbjct: 62 WRY---GVELTDGPRRAS--AIVRGRVLGGSGAVNGGYFCRALPADFDAWPI---PGWSW 113
Query: 126 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 185
D+ L +F E +HGT G +PV + E + I F +A G+
Sbjct: 114 DDVLPHFRAIETDLDF----DGPLHGTAGPIPVR--RTAELDGISAAFVAAALGAGFGWI 167
Query: 186 KDMNDRYVDVGF--AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 243
D+N D +P G R S A AYL P A KR NL V ++V +++ +
Sbjct: 168 ADLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLP-ALKRPNLTVEADTRVVRILFS-G 225
Query: 244 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR 303
A GVE + G + A++ V+L AGA+ +A LLLLSGIGP L I V DL
Sbjct: 226 TRAVGVEVL-GDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP 283
Query: 304 VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVN----RIGPLSNAGLWSFTGYID 359
VG + + ++ P + R V + ++N I P + G+
Sbjct: 284 VGSDFVDHPEWVLPY-RWRPTHDRP--DTSPVLETVLNTADIEIRPYT-------AGFTA 333
Query: 360 TLQNTARPDLEIHLLYFQQNDIRNMYLATLIRGTD------YITRLEQTEAIRLAGGTLM 413
+ + R D + + + + + LA+ Y + A+R G +
Sbjct: 334 LVPGSPRDDPHLGVALMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALR--AGAAL 391
Query: 414 SLNL----EACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKG 469
+ L E ++ T+ + G+ MG DDP AVV +V+G
Sbjct: 392 AHELLGSPELGPLLEPAVREGEASWVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRG 451
Query: 470 IKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 504
++GL V D S+LP A + M+ E+ A+ +
Sbjct: 452 VEGLWVVDGSILPVIPSRGPHATAVMVAERAAEFL 486
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 113 bits (285), Expect = 6e-29
Identities = 73/237 (30%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 80 VRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDY 138
V R+ + AG +GG S+V R + + +A G GWGYD+ L Y K E
Sbjct: 14 VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE-- 71
Query: 139 RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP---CPKDMNDRYVDV 195
G G G+ ++ N + + +A+ELGYP P++ N +
Sbjct: 72 ------------GPLGVTTKGIEESPLNQALLK----AAEELGYPVEAVPRNSNGCH-YC 114
Query: 196 GFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNS 254
GF L G + S A +L P + NL +L +K K+II + A GVE +
Sbjct: 115 GFCGLG--CPTGAKQSTARTWLRPALER--NLRILTGAKAEKIIILGRGGRAVGVEARDG 170
Query: 255 KGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKL 310
G R +TA KEV++ AGA+ LLL SG+G H VG+NL+L
Sbjct: 171 GGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQL 215
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 91.0 bits (226), Expect = 2e-19
Identities = 95/339 (28%), Positives = 139/339 (41%), Gaps = 98/339 (28%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 70
+D I+VG AGC LA LS+ + VLL+E GG +P ++ +S E H LA
Sbjct: 56 YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG-------VPFGNANVSFLENFHIGLA 106
Query: 71 E-----PSQF--AGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW 123
+ SQ + GV NAR ++ LGG + + Y R ++ F +
Sbjct: 107 DTSPTSASQAFISTDGVINARARV-----LGGGTCINAGFYSRAST----RFIQKA---- 153
Query: 124 GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 183
G+D L +E Y V E + VH P
Sbjct: 154 GWDAKLV----NESYPWV---ERQIVH---------------------------WPKVAP 179
Query: 184 CPKDMNDRYVDVGFAELPGMT---------------RYGLRFSAADAYLTPIAGKRTNLY 228
+ D ++VG + G T +G R +AA+ AG L
Sbjct: 180 WQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELL---AAGNPNKLR 236
Query: 229 VLKRSKVTKVIINDQNV---ATGVEYVNSKGETVR--VTANK--EVILTAGAIANAQLLL 281
VL + V K++ + ATGV + + G + ++ NK E+IL+AGAI + Q+LL
Sbjct: 237 VLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLL 296
Query: 282 LSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMA 320
LSGIGPK L + KIPV L+ + G MA
Sbjct: 297 LSGIGPKKELKKHKIPV----------VLHNEHVGKGMA 325
Score = 30.2 bits (68), Expect = 3.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 460 VVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIG 497
VV + KV G+ LRV D S + T A M+G
Sbjct: 532 VVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMG 569
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 79.7 bits (197), Expect = 7e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 403 EAIRLAGGTLMSLNLEA-------CSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNAD 455
A+RLA L + +E S YIR T+ +P+GT MG
Sbjct: 36 AALRLARRILAAALVELTPGPVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADP 95
Query: 456 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKC 500
D VV PDL+V G+ LRV D SV P++ Y + E+
Sbjct: 96 DD-GVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 139
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 40.6 bits (96), Expect = 0.001
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGD 45
+D I++GA AG LA R + +KV LIE GG
Sbjct: 4 QRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGLLGGT 42
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 40.0 bits (94), Expect = 0.002
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAE 71
D++I+G AG A RL+ LKV LIE G T + + L L + LA
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR-LGLKVALIEREGGTCYNR--GCLPKKLLLEVAEGLELAI 57
Query: 72 PSQFAGLGVRNARIKITAGK 91
+ +++ G
Sbjct: 58 GLALPEEVYKEFGVEVLLGT 77
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 39.6 bits (93), Expect = 0.003
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 12 DIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDTP 47
D++IVGA AG +LA RL + L+VLLI+AG P
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPP 37
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 39.8 bits (93), Expect = 0.003
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
+D+IIVG S AG VLA LS+ KVL++E
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLE 63
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 39.4 bits (92), Expect = 0.004
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD--TPIHSRIPGMSSVLSLSEFD 65
+D++IVGA AG A RL++ + L VL++E G + G S +L E
Sbjct: 4 YDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEPGAKPCC--GGGLSPRALEELI 57
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 38.3 bits (90), Expect = 0.007
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
DI+IVG G LA L+ LKV LIEA
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEAT 32
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 36.1 bits (84), Expect = 0.033
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
D+IIVG G LA LS + +K+ LIEA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 35.8 bits (83), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
D+ IVGA AG LA L+ + L V L+E
Sbjct: 3 LDVAIVGAGPAGLALALALAR-AGLDVTLLER 33
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 35.9 bits (83), Expect = 0.047
Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
FD IIVGA +G VLAN L++++ +VL++E
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVE 31
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 35.6 bits (83), Expect = 0.055
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44
+D++++GA AG V A R ++ LKV L+E G
Sbjct: 5 YDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 35.4 bits (82), Expect = 0.057
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
+D+++VGA AG A RL++ L+VLL+E
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLE 30
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 35.4 bits (82), Expect = 0.073
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 6 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
+D+ IVG G LA L + S L++ LIEA
Sbjct: 14 TRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEA 49
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 31.3 bits (72), Expect = 0.12
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 15 IVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
IVGA +G V A L++ VL++E
Sbjct: 1 IVGAGLSGLVAAYLLAK-RGKDVLVLEKRDR 30
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 34.2 bits (79), Expect = 0.15
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
FD +IVGA +G V+A +++ +VL++E
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEK 32
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 33.9 bits (78), Expect = 0.18
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 232 RSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 275
SKV +I +DQ GV V KG+ + + A K V+L G
Sbjct: 150 NSKVEDLIQDDQGTVVGVV-VKGKGKGIYIKAAKAVVLATGGFG 192
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 34.1 bits (78), Expect = 0.21
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 214 DAYLTPIAGKRTNLYVLKRSKVTKVIINDQN----VATGVEYVNSKGETVRVTANKEVIL 269
+R L L + T+++ N+ N A V + S G+ + A +L
Sbjct: 218 LQPNDDAPSERFTL--LTNHRCTRLVRNETNESEIEAALVRDLLS-GDRFEIKA-DVYVL 273
Query: 270 TAGAIANAQLLLLSGIGPKAHLDEVKIP 297
GA+ N Q+L+ SG G D P
Sbjct: 274 ACGAVHNPQILVNSGFGQLGRPDPTNPP 301
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 33.7 bits (77), Expect = 0.25
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 43
D IIVG AG ++A RL ++ +IEAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 33.4 bits (76), Expect = 0.31
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
S D FD I+VGA AG V A ++ + L VL+IE G
Sbjct: 2 SDDKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERG 37
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 33.2 bits (77), Expect = 0.31
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
+D+I++GA AG V A R ++ KV LIE G
Sbjct: 4 YDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 33.0 bits (76), Expect = 0.32
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 51
D++++G+ AG A +E + LKV ++E G +
Sbjct: 1 DVVVIGSGLAGLAAALEAAE-AGLKVAVVEKGQPFGGATA 39
Score = 32.3 bits (74), Expect = 0.61
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 232 RSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLLLLSGI----- 285
R +I+ D V V G VR+ A V+L G NA+LLL +
Sbjct: 160 RHPADDLIVEDGRVTGVVVENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTT 219
Query: 286 GPKAHL-DEVKIPVKQDLRVGENLKLNAQFTGPV 318
GP A+ D + + ++ + ++L QF P
Sbjct: 220 GPPANTGDGIALALRAGAALTDDLMEFVQF-HPT 252
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 33.2 bits (76), Expect = 0.34
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47
D+ ++G AG +A L+ L+V LIE P
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPIP 35
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 33.0 bits (76), Expect = 0.39
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVS-SLKVLLIE 41
+D++I+G G A LSE L V L+E
Sbjct: 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 32.6 bits (75), Expect = 0.43
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
DI++VGA AG A L+ S LKV LIE
Sbjct: 2 MHSDIVVVGAGPAGLSFARSLAG-SGLKVTLIE 33
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 31.9 bits (73), Expect = 0.66
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAE 71
D++IVG AG +LA L+ + ++V+L+E T + R G++ ++ A L +
Sbjct: 3 DVLIVGGGPAGLMLALLLAR-AGVRVVLVERHATTSVLPRAGGLNQR-TMELLRQAGLED 60
Query: 72 PSQFAGLGVRNARIKITAGKG 92
+ G + + +
Sbjct: 61 --RILAEGAPHEGMGLAFYNT 79
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 32.2 bits (74), Expect = 0.76
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 282
K+ + +L +KVT V ND V Y N GET +T K V++ G N + L L
Sbjct: 222 KKKGVKILTNTKVTAVEKNDD----QVTYENKGGETETLTGEK-VLVAVGRKPNTEGLGL 276
Query: 283 SGIGPKAHLDEVK-IPVKQDLRVG 305
+G + LDE I V + +R
Sbjct: 277 EKLGVE--LDERGRIVVDEYMRTN 298
Score = 28.8 bits (65), Expect = 9.0
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
+D+I++G G V A R +++ LKV L+E
Sbjct: 2 YDVIVIGGGPGGYVAAIRAAQL-GLKVALVE 31
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 31.8 bits (72), Expect = 0.79
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
S D FD IIVGA AG V A L+ + +VL+IE G
Sbjct: 2 SEDIFDAIIVGAGLAGSVAALVLAREGA-QVLVIERG 37
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 31.5 bits (72), Expect = 0.85
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44
D++++G G A L+ L V L+E G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGD 32
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 31.8 bits (73), Expect = 0.89
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
FD+II+G AG + A ++ +VLLI+ G
Sbjct: 4 FDVIIIGGGPAGLMAAISAAKAGR-RVLLIDKG 35
>gnl|CDD|183248 PRK11636, mrcA, penicillin-binding protein 1a; Provisional.
Length = 850
Score = 32.0 bits (73), Expect = 0.89
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 307 NLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIG 344
+ + A + P +AFSAP Y EMV + + NR G
Sbjct: 245 SEPIVANYHAPEIAFSAP-----YLSEMVRQEMYNRYG 277
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 31.8 bits (73), Expect = 0.91
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 221 AGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276
R N+ VL+ ++ +II D GV +N GE A K V+L G +
Sbjct: 143 VRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRA-KAVVLATGGLGG 197
Score = 31.5 bits (72), Expect = 1.3
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 6 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLI 40
+ D++I+G+ AG A L+ S +V ++
Sbjct: 3 TDFEHPDVLIIGSGLAGLTAALSLAP--SFRVTVL 35
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 31.8 bits (73), Expect = 0.96
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44
+D+I++G AAG + A ++ +VLLI+ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK-RGRRVLLIDKGK 33
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 32.0 bits (73), Expect = 0.98
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
FD++++G AG A +E + LKV L+
Sbjct: 7 FDVVVIGGGGAGLRAAIEAAE-AGLKVALLS 36
Score = 31.2 bits (71), Expect = 1.7
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 275
K + + + V ++++D GV + + + V K VIL G
Sbjct: 150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 31.5 bits (71), Expect = 1.0
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 244 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVK 299
+VA G+EY+ SK R A + ++++ +A L+ +G +D K+PVK
Sbjct: 108 DVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG-VDNSKLPVK 162
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 31.6 bits (72), Expect = 1.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 5 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIE 41
D +D++IVG G L LS+ ++LK + LIE
Sbjct: 40 RLGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIE 77
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 31.3 bits (71), Expect = 1.0
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
D++IVGA +AG A LS+ ++KV +IE
Sbjct: 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
>gnl|CDD|168201 PRK05714, PRK05714,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 405
Score = 31.3 bits (71), Expect = 1.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--------GDTPIHSRIPGMSS 57
D++IVGA G LA L + S L+VLL++ G P R+ +S+
Sbjct: 4 DLLIVGAGMVGSALALAL-QGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSA 56
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 31.3 bits (71), Expect = 1.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 11 FDIIIVGASAAGCVLANRLSEVS---SLKVLLIEAGGDTP 47
FD++IVG G LA L LKVLL++A D P
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA-VDNP 39
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 31.1 bits (71), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
D+IIVGA +G A L++ + LKV + E
Sbjct: 32 DVIIVGAGPSGLTAAYYLAK-AGLKVAIFER 61
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 31.0 bits (71), Expect = 1.4
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 11 FDIIIVGASAAGCVLANRLSEVS--SLKVLLIEAGGDTPIHSRIPG 54
D+IIVG AG LA LS +S L V LIEA P PG
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEA--FAPESDAHPG 47
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 31.2 bits (71), Expect = 1.4
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
D+++VG AG +A ++SE + L V I+
Sbjct: 25 KSRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCID 58
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal domain
of AIR synthase forms the dimer interface of the
protein, and is suggested as a putative ATP binding
domain.
Length = 222
Score = 30.4 bits (69), Expect = 1.5
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 245 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRV 304
+ TGV+ V V A ++ T G + L G A +D IP+ + +R
Sbjct: 119 ILTGVDAVLELVAAGDVHAMHDI--TDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRW 176
Query: 305 G 305
Sbjct: 177 L 177
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 30.6 bits (69), Expect = 1.6
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 345 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQN-DIRNMYLATLIRGTDYITRLEQTE 403
PLS+ G SF Y R LE L + + I+++ LAT IRG D ++ L+
Sbjct: 196 PLSDLGKVSFRSY------WTRVLLEQ-LRDVKGDVSIKDLSLATGIRGEDIVSTLQSLN 248
Query: 404 AIRLAGGT 411
I+ G
Sbjct: 249 LIKYWKGQ 256
>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase
component YidC; Provisional.
Length = 795
Score = 30.9 bits (70), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 142 IYNESKAVHGT--------QGYLPVGLFKNKENNIIR 170
I N+ A++GT GYLP+G++ +KE +
Sbjct: 165 ISNKDSAIYGTALVFLRSGNGYLPLGIYNSKEECLES 201
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 30.7 bits (70), Expect = 2.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG-----GDTPIHSRIPGMSS 57
FD+++VG G LA L++ S L+V L+ D SR+ +S
Sbjct: 6 FDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPPRPADDAWDSRVYAISP 56
>gnl|CDD|233569 TIGR01776, TonB-tbp-lbp, TonB-dependent lactoferrin and transferrin
receptors. This family of TonB-dependent receptors are
responsible for import of iron from the mammalian iron
carriers lactoferrin and transferrin across the outer
membrane. These receptors are found only in bacteria
which can infect mammals such as Moraxella, Mannheimia,
Neisseria, Actinobacillus, Pasteurella, Haemophilus and
Histophilus species [Transport and binding proteins,
Cations and iron carrying compounds, Transport and
binding proteins, Porins].
Length = 932
Score = 30.9 bits (70), Expect = 2.1
Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 26/158 (16%)
Query: 77 GLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN--------------G 122
GLG R + + L S +N+ + G F L Y G
Sbjct: 606 GLGGRYDKHNFKSTDRLVYSGTYRNLSWNFGIVVKPTPFFSLSYRASTGFRVPSFYELYG 665
Query: 123 WGYDETLK----YFVKSEDYRS--VIYNESKAV-HGTQGYLPVGLFKNKENNIIREIFET 175
+ K F+++ D + + +E A G G+L V F+N+ ++I E
Sbjct: 666 ERRGKASKKNVQQFLRTPDLKPEKSLNHEIGARFKGDFGHLEVSYFRNRYKDMIAE---- 721
Query: 176 SAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAA 213
A E Y D + G+
Sbjct: 722 -APETRTDNEAGQTYGYCDHNYHNAQNAVLKGINILGK 758
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 30.4 bits (69), Expect = 2.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 11 FDIIIVGASAAGCVLAN---RLSEVSSLKVLLIEA 42
FDI IVGA G LA R S +L + LI+A
Sbjct: 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDA 46
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 30.4 bits (69), Expect = 2.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLI 40
FD+++VG+ AAG L L S L+V LI
Sbjct: 10 FDVLVVGSGAAG--LYAALCLPSHLRVGLI 37
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 30.2 bits (69), Expect = 2.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 233 SKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG 272
++ T++I++D GVE GETV + A K V+L AG
Sbjct: 198 TRATRLIVDDDGRVVGVE-ARRYGETVAIRARKGVVLAAG 236
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 29.8 bits (68), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
D+ IVGA +G A L++ + LKV + E
Sbjct: 27 DVAIVGAGPSGLTAAYYLAK-AGLKVAVFE 55
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 29.7 bits (67), Expect = 3.6
Identities = 29/113 (25%), Positives = 36/113 (31%), Gaps = 16/113 (14%)
Query: 22 GCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPS---QFAGL 78
G VL + + + IE G D I R V S E +H L S F
Sbjct: 28 GAVLNATIDKYI---YVTIEKGFDDEIRVRYDRTEFVKSYLENEHKPLVVESLKRDFLEF 84
Query: 79 -GVRNARI----KITAGKGLGGSSAVQNILYQ-----RGTSYDYENFAKLGYN 121
G + G GLG SSA L +G S A+ Y
Sbjct: 85 NGGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYE 137
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 29.6 bits (67), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
FD+I++G G +A + LKV L+E G
Sbjct: 13 FDVIVIGGGITGAGIARDAA-GRGLKVALVEKG 44
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 29.7 bits (67), Expect = 4.2
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 1 MTPYVKS------GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GGDT 46
M+P V FD+I++GA AAG + A + ++ LKVLL+E GG T
Sbjct: 1 MSPVVSELSPERWDAEFDVIVIGAGAAG-MSAALFAAIAGLKVLLVERTEYVGGTT 55
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 29.7 bits (67), Expect = 4.3
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGDTPIHSRIPGMSSVLSLSEFD 65
D+ I+GA +G A L + ++ E G T ++R PG+
Sbjct: 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLG 66
Query: 66 HAYL--AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGT 108
+L FA IK K I +
Sbjct: 67 FPFLPFRWDEAFAPFAEIKDYIKDYLEK----YGLRFQIRFNTRV 107
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 29.6 bits (67), Expect = 4.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
D++IVG AG LA +LS + ++E
Sbjct: 34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVE 63
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 29.5 bits (67), Expect = 5.2
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
D+I+VGA AG V A L++ + +VLL++
Sbjct: 6 DVIVVGAGLAGLVAAAELAD-AGKRVLLLD 34
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 29.3 bits (67), Expect = 5.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
+D+I++GA G V A R +++ LKV ++E
Sbjct: 5 YDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKE 36
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 29.5 bits (67), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 12 DIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGG 44
D+++VG AG A +++ KVLL+E G
Sbjct: 1 DVVVVGGGPAGVAAA-----IAAARLGAKVLLVERRG 32
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form.
Sarcosine oxidase catalyzes the oxidative demethylation
of sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate.
The enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism,
Amino acids and amines].
Length = 380
Score = 29.0 bits (65), Expect = 5.6
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 51
FD+I+VGA GC A L++ K LL+E HSR
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQF--DLPHSR 38
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 29.2 bits (66), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 11 FDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGGD 45
D++IVGA AG A LS V LK+ +++ G D
Sbjct: 19 LDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLD 57
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 29.2 bits (66), Expect = 6.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
D+ +VGA +G A L+ + VL+ EA
Sbjct: 14 DVAVVGAGVSGLAAAYALASKHGVNVLVTEA 44
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 28.6 bits (64), Expect = 6.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
D++IVGA +G A L++ LKV +IE
Sbjct: 19 DVVIVGAGPSGLTAAYYLAK-KGLKVAIIER 48
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 29.1 bits (66), Expect = 6.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
D++I+G+ AAG LA RL+E +V ++ G
Sbjct: 9 CDVLIIGSGAAGLSLALRLAE--HRRVAVLSKG 39
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 28.9 bits (65), Expect = 6.8
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEF 64
+D++++GA G A L+ + LKV ++E + R+ G + L F
Sbjct: 4 YDVVVIGAGLNGLAAAALLAR-AGLKVTVLEK------NDRVGGRARTFELDGF 50
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 28.6 bits (64), Expect = 8.1
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
D+I+VGA AG V A L++ + +VL+++ G+
Sbjct: 7 DVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGE 39
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 28.4 bits (63), Expect = 8.3
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 30 SEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFA 76
++V SL + LIE P H + M +L +++ + LA+PS+++
Sbjct: 189 ADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWS 235
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 28.5 bits (64), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
+D+ I+G AG LA L+ +KV+ I+
Sbjct: 2 YDVAIIGLGPAGSALARLLAG--KMKVIAID 30
>gnl|CDD|238990 cd02033, BchX, Chlorophyllide reductase converts chlorophylls into
bacteriochlorophylls by reducing the chlorin B-ring.
This family contains the X subunit of this three-subunit
enzyme. Sequence and structure similarity between bchX,
protochlorophyllide reductase L subunit (bchL and chlL)
and nitrogenase Fe protein (nifH gene) suggest their
functional similarity. Members of the BchX family serve
as the unique electron donors to their respective
catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase
component 1). Mechanistically, they hydrolyze ATP and
transfer electrons through a Fe4-S4 cluster.
Length = 329
Score = 28.4 bits (63), Expect = 8.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 90 GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFV 133
G+G GG RG + +E KLG++ W +D L F+
Sbjct: 123 GRGCGG----------RGIIHGFELLEKLGFHDWDFDYVLLDFL 156
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 28.7 bits (65), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
D I+G AG LA L+ +V L EA
Sbjct: 262 DAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 28.5 bits (64), Expect = 8.9
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 233 SKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276
+ +++ D VA V V + G + A K V+L AG +
Sbjct: 238 APARELLREDGRVAGAV--VETPGGLQEIRARKGVVLAAGGFPH 279
>gnl|CDD|237208 PRK12795, fliM, flagellar motor switch protein FliM; Reviewed.
Length = 388
Score = 28.5 bits (64), Expect = 10.0
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 289 AHLDEVKIPVKQ--DLRVGENLKLNAQFTGPV 318
A LDE +P+K+ +L+VG+ L L+A+ V
Sbjct: 308 AVLDEQTLPLKRVLNLKVGDTLMLDARPDALV 339
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,669,881
Number of extensions: 2502238
Number of successful extensions: 2027
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2000
Number of HSP's successfully gapped: 101
Length of query: 512
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 411
Effective length of database: 6,457,848
Effective search space: 2654175528
Effective search space used: 2654175528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)