RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1059
(512 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 385 bits (992), Expect = e-128
Identities = 127/580 (21%), Positives = 200/580 (34%), Gaps = 95/580 (16%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 63
+G +D II G G +A +L+E +KVL+IE G + P + +
Sbjct: 21 AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80
Query: 64 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 122
D YL P + R I AGKGLGGS+ + + R +++ K+ G G
Sbjct: 81 VDQNYLTVP----LINNR--TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEG 134
Query: 123 WGYDETLKYFVKSEDYR-------SVIYNESKAVHGTQGYLPVGLFKN-KENNIIREIFE 174
W +D +Y K+E R + ++ + HGT G + G N + + I +
Sbjct: 135 WNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALM 194
Query: 175 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 233
+ LG P +D G + + + +R AA A+L P +R+NL +L
Sbjct: 195 NTVSALGVPVQQDFL-CGHPRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTGQ 252
Query: 234 KVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 290
V KV+ A GV + +K V A EV+L AG+ + +L SGIG K+
Sbjct: 253 MVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 291 LDEVKIPVKQDLRVGENL----------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLV 340
LD+ + DL VG N+ + ++ G A E Y
Sbjct: 313 LDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANF-----TETFGDYAP 367
Query: 341 NRIGPL-SNAGLW-SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMYLATLIRGTDYIT- 397
L + W T N ++ D + + I
Sbjct: 368 QARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINF 427
Query: 398 -------------------------------------RLEQTEAIRLA-----GGTLMSL 415
L Q A +LA G +
Sbjct: 428 DLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEY 487
Query: 416 NLE----ACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 471
+ + W+ Y+ + V + M + + VV KV G +
Sbjct: 488 FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMM-SRELGGVVDATAKVYGTQ 546
Query: 472 GLRVADISVLPNAII---TQSDAISYMIGEKCADLVKTSY 508
GLRV D S+ P + I Y + K AD + Y
Sbjct: 547 GLRVIDGSIPPT-QVSSHVM--TIFYGMALKVADAILDDY 583
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 368 bits (947), Expect = e-122
Identities = 128/576 (22%), Positives = 205/576 (35%), Gaps = 84/576 (14%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 63
SG D II G G A RL+E ++ VL+IE+G D + S
Sbjct: 16 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSS 75
Query: 64 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 122
DHAY + I +G GLGGS+ V + R +++ + G G
Sbjct: 76 VDHAYETVE---LATNNQ--TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEG 130
Query: 123 WGYDETLKYFVKSEDYRSVIYNESK-------AVHGTQGYLPVGLFK-NKENNIIREIFE 174
W +D Y +++E R+ + + HG G + G + + I +
Sbjct: 131 WNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALM 190
Query: 175 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 233
++ ++ G P KD G + P + +R AA +L P +R NL VL
Sbjct: 191 SAVEDRGVPTKKDFG-CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLTGQ 248
Query: 234 KVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 290
V KV+++ A GVE+ KG T V A EV+L AG+ + +L SGIG K+
Sbjct: 249 YVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSI 308
Query: 291 LDEVKIPVKQDLRVGENL------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIG 344
L+ + I DL VG NL + ++ T +++
Sbjct: 309 LEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHEL 368
Query: 345 PLSNAGLWSFT-----GYIDTLQNTARPDLEIHLLYFQQNDIRNMYLATL---------- 389
+ W+ G+ +T + + + ++L T
Sbjct: 369 LNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDL 428
Query: 390 ---------IRGTD-----------YIT----RLEQTEAIRLA-----GGTLMSLNLE-- 418
I D Y L Q A +LA G + +
Sbjct: 429 LPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET 488
Query: 419 --ACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVA 476
+ +WT YI + + VGT M + VV +V G++GLRV
Sbjct: 489 IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMM-PKEMGGVVDNAARVYGVQGLRVI 547
Query: 477 DISVLPNAII---TQSDAISYMIGEKCADLVKTSYN 509
D S+ P + + Y + K +D + Y
Sbjct: 548 DGSIPPT-QMSSHVM--TVFYAMALKISDAILEDYA 580
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 364 bits (938), Expect = e-121
Identities = 146/579 (25%), Positives = 216/579 (37%), Gaps = 102/579 (17%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTPIHSRIP-GMSSVLSLSEFDHA 67
FD ++VGA AG V+A RL+E + VL++EAG + + + P ++ S FD
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 68 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 126
Y AG R I G+ LGGSS+V ++ RG++ D++ +A + G GW +D
Sbjct: 63 YTTTAQ--AGYNGR--SIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118
Query: 127 ETLKYFVKSEDY------RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 180
++ K+E + AVHGT G + + L + + + QE
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQ 176
Query: 181 GYPCPK--DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 238
DM +G + G R S++ AYL P A R NL VL ++VTK+
Sbjct: 177 SEEFFFNPDMG-TGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKL 234
Query: 239 IINDQN------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 292
+ + T V A KEV+L+AG++ LL LSGIG + L
Sbjct: 235 VNSGTTNGLPAFRCVEYAE-QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 293 EVKIPVKQDLR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGP 345
V I + VG NL L A F F + + + ++ R GP
Sbjct: 294 SVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQT-FDNIFRDSSEFNVDLDQWTNTRTGP 352
Query: 346 LSNAG------------LWSFTGYIDTLQNTARPDLEIHLL-YFQQNDIRNM-------- 384
L+ F + D E + I
Sbjct: 353 LTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIPRPDTGSFMSV 412
Query: 385 -----------------------------YLAT------LIRGTDYITRLEQTEAIRLAG 409
YL+T +I+ R +A
Sbjct: 413 TNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFV 472
Query: 410 GTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKG 469
L + + YIR T +PVGT M VV PDLKVKG
Sbjct: 473 IRPFDPRLRDPT-----DDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKG 527
Query: 470 IKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVK 505
+ GLR+ D S+LP TQ Y++G++ ADL+K
Sbjct: 528 VDGLRIVDGSILPF-APNAHTQ--GPIYLVGKQGADLIK 563
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 318 bits (818), Expect = e-103
Identities = 106/577 (18%), Positives = 179/577 (31%), Gaps = 118/577 (20%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSE 63
S +D IIVGA G + A+RLSE + KVLL+E GG T S L++
Sbjct: 4 SATPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62
Query: 64 FDH-----AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 118
FD + + + + I + AG +GG ++V LY D+
Sbjct: 63 FDIPGLFESLFTDSN--PFWWCK--DITVFAGCLVGGGTSVNGALYWYPNDGDFS----- 113
Query: 119 GYNGW--GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 176
GW + Y K S T G + + N++ ++ +
Sbjct: 114 SSVGWPSSWTNHAPYTSKLSSRLP-----STDHPSTDGQRYL----EQSFNVVSQLLK-- 162
Query: 177 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 236
Q D + Y D F G R YL A R N V+
Sbjct: 163 GQGYNQATINDNPN-YKDHVFGYSAFDFLNGKRAGPVATYLQT-ALARPNFTFKTNVMVS 220
Query: 237 KVIINDQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 293
V+ + + GV+ + + VT VIL+AGA +++L SGIGP +
Sbjct: 221 NVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279
Query: 294 VKIPVKQDLR-----------VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVF 336
V+ VG N +N F + +
Sbjct: 280 VQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAA 339
Query: 337 KYLVNRIGPLS----NAGLWSFT----GYIDTLQNTARPDLEIHLLYFQQND-------- 380
+YL N+ G + W G+ Q T RP N
Sbjct: 340 QYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITV 399
Query: 381 ----------------------IRNMYLAT------LIRGTDYITR-LEQTEAIRLAGGT 411
+ +L L++ + + + +
Sbjct: 400 YLSTGIQSRGRIGIDAALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPD 459
Query: 412 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 471
++ + T +++ V + +G + +AVV ++KV G
Sbjct: 460 ------------VTQTLEEYVDAYDPATMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTN 506
Query: 472 GLRVADISVLPNAII---TQSDAISYMIGEKCADLVK 505
L + D ++P+ + Q + E+ A +
Sbjct: 507 NLFIVDAGIIPH-LPTGNPQGTLM--SAAEQAAAKIL 540
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 299 bits (768), Expect = 8e-96
Identities = 113/539 (20%), Positives = 186/539 (34%), Gaps = 95/539 (17%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 70
+D +IVG +GC LA LSE KVL++E G + + + + +
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 71 EPSQFA-GLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 129
+F G+ N R G+ LGG+S + +Y R + Y W D
Sbjct: 85 PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGV----DWDMDLVN 135
Query: 130 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 189
+ + ED ++ + F + + +
Sbjct: 136 QTYEWVEDTI--------VYKPNSQSW---------QSVTKTAFLEAGVHPNH----GFS 174
Query: 190 DRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--NVA 246
+ + G + G T AAD L G NL V + V K+I ++ A
Sbjct: 175 LDHEE-GTR-ITGSTFDNKGTRHAADELLNK--GNSNNLRVGVHASVEKIIFSNAPGLTA 230
Query: 247 TGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR- 303
TGV Y +S G V + EVI++AG I QLLLLSG+GP+++L + IPV
Sbjct: 231 TGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPY 290
Query: 304 VGENL------KLNAQFTGPVMAFSAPLKRTVYSQEMV-----------FKYLVNRIGPL 346
VG+ L +N P+ + F + + PL
Sbjct: 291 VGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPL 350
Query: 347 SNAGLWSFT---------GYIDTLQNTARPDL--EIHLLYFQ-QNDIRNMYLATLIRGTD 394
N+ F G + TL++++ + + Y+ D+ + G
Sbjct: 351 PNSTFAHFASKVAGPLSYGSL-TLKSSSNVRVSPNVKFNYYSNLTDLS-----HCVSGMK 404
Query: 395 YITRLEQTEAI-RLAGGTLMSLNLEACSQYPWR----STHSWTCYIRHLTTTTSNPVGTV 449
I L T+A+ L + P ++ + R + + G
Sbjct: 405 KIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGC 464
Query: 450 MMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVK 505
++G V+ D +V GI LRV D S P Q + M+G +
Sbjct: 465 LVG------KVLDGDFRVTGINALRVVDGSTFPY-TPASHPQGFYL--MLGRYVGIKIL 514
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 288 bits (739), Expect = 5e-91
Identities = 93/399 (23%), Positives = 150/399 (37%), Gaps = 43/399 (10%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP-----IHSRIPGMSSVLSLSEFD 65
FD +IVG AG +A RL+E ++ VL++EAG P I P + L S++D
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEIT--TPSSAMDLRNSKYD 64
Query: 66 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 125
AY T GK LGGSS++ + G ++ + + G W +
Sbjct: 65 WAYKTTMV--RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 126 DETLKYFVKSEDYR--SVIYNESKAVHGTQGYLPVGLFKNK-ENNIIREIFETSAQELGY 182
D + Y KS Y +Y+ G G +P+ + E RE + + +G
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182
Query: 183 PCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 242
P +++ D G G R + + N+ ++ ++IIN+
Sbjct: 183 PLIENIYD-GEMDGLTHCCDTIYRGQRSGSFLF-----VKNKPNITIVPEVHSKRLIINE 236
Query: 243 QN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 301
+ GV V + G + A++EVIL+ G +LL+LSGIGP L I D
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 302 LR-VGENL------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGL--- 351
R VG+NL + L+ +V Y NR GP+ + L
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELV 356
Query: 352 --------------WSFTGYIDTLQNTARPDLEIHLLYF 376
+ + ++ P + H
Sbjct: 357 GFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELD 395
Score = 92.6 bits (231), Expect = 4e-20
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 431 WTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---T 487
+ T +P GT + + VV P LKV GIK LRVAD SV+P I
Sbjct: 497 MHRAVLDRCQTAFHPTGTARLS-KNIDQGVVDPKLKVHGIKKLRVADASVIPI-IPDCRI 554
Query: 488 QSDAISYMIGEKCADLVK 505
Q+ +GEKCAD++K
Sbjct: 555 QNSVY--AVGEKCADMIK 570
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 276 bits (709), Expect = 8e-87
Identities = 96/373 (25%), Positives = 149/373 (39%), Gaps = 42/373 (11%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIP-GMSSVLSLSEFDHAY 68
FD I+VG +AG +A RLSE ++ V L+EAG D + + L S +D Y
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 69 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN-FAKLGYNGWGYDE 127
EP N+ ++ K +GG S+ + + D + AK G GW +
Sbjct: 74 PIEPQ--ENG---NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 128 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 187
+ + E HG G + + + + ++ G P K
Sbjct: 129 AWPLYKRLETNE--DAGPDAPHHGDSGPVHLM--NVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 188 MNDRYVDVGFAELPGMTRY-GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 246
V G R G R S++ +Y+ P ++ N +L + +++ +
Sbjct: 185 NTGTTVVNGANFFQINRRADGTRSSSSVSYIHP-IVEQENFTLLTGLRARQLVFDADRRC 243
Query: 247 TGVEYV-NSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-V 304
TGV+ V ++ G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V D V
Sbjct: 244 TGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGV 303
Query: 305 GENLKLNAQFTGPVMAFSAPLKRTVYSQ---EMVFKYLVNRIGPLSNAGLWSFTGYIDTL 361
GE+L Q E V ++ + + W + T
Sbjct: 304 GEHL-----------------------QDHPEGVVQFEAKQPMVAESTQWWEIGIFTPTE 340
Query: 362 QNTARPDLEIHLL 374
RPDL +H
Sbjct: 341 DGLDRPDLMMHYG 353
Score = 91.8 bits (229), Expect = 6e-20
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 434 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSD 490
YIR T +PVGTV MG +D + + P+L+VKG+ GLRVAD SV+P +
Sbjct: 456 YIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPE-HVTVNPNIT 514
Query: 491 AISYMIGEKCADLVK 505
+ MIGE+CADL++
Sbjct: 515 VM--MIGERCADLIR 527
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 273 bits (701), Expect = 6e-86
Identities = 103/373 (27%), Positives = 151/373 (40%), Gaps = 45/373 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 69
DI+IVG +AG +LA RLSE +VLLIEAG T P L +D Y
Sbjct: 18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 70 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 128
E AG R G+ +GGSS + + Y RG D++ + G WG+DE
Sbjct: 78 TEAQ--AGTAGR--AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133
Query: 129 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 188
L F ED+ +HG G LP+ E + + F + LG P +
Sbjct: 134 LPVFQAIEDH----PLGGDGIHGKGGPLPIH-LPADEVSPLARAFIEAGASLGLPRLEGH 188
Query: 189 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 248
N +G R G R +AADA+LT R NL +L S+V ++ + + N
Sbjct: 189 N-SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL-EGNQVRS 246
Query: 249 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGEN 307
+E V + + V A +++L AGA+ + LL+ SGIGP LD + D+ +G N
Sbjct: 247 LEVV-GRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRN 304
Query: 308 LKLNAQFTGPVMAFSAPLKRTVYSQ----EMVFKYLVNRIGPLSNAGLWSFTGYI--DTL 361
L Q Y + P S Y+ D+
Sbjct: 305 L-----------------------QDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSF 341
Query: 362 QNTARPDLEIHLL 374
+P++ +
Sbjct: 342 TAAGQPEIVVGCG 354
Score = 86.0 bits (214), Expect = 4e-18
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 434 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSD 490
+I T +P GT MG DP+AVV +L++K + L V D S++PN + +
Sbjct: 452 FIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPN-LTAGPIHAA 508
Query: 491 AISYMIGEKCADLVK 505
+ I E A
Sbjct: 509 VL--AIAETFARQYH 521
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 112 bits (281), Expect = 8e-27
Identities = 84/549 (15%), Positives = 162/549 (29%), Gaps = 105/549 (19%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLS-L 61
+G +++G V A RL E + ++ L++E G P + GM +
Sbjct: 2 NGGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRS 60
Query: 62 SEFDHAYLAEPSQFAGLGVRNAR---------------IKITAGKGLGGSSAVQNILYQR 106
S F + A F L V N + + G+G+GG S V +
Sbjct: 61 SWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 120
Query: 107 GTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 166
+E E + + + ++ F++ E
Sbjct: 121 PKRSYFEEIL----PRVDSSEMYDRY----------FPRANSMLRVNHIDT-KWFEDTEW 165
Query: 167 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPG------------MTRYGLRFSAAD 214
+ A + G N E G + S
Sbjct: 166 YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDK 225
Query: 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGVEYVNSKGETV--RVTANKEVILTA 271
YL A + + +V + A VE ++ G+ + + + + + L A
Sbjct: 226 TYL-AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGA 284
Query: 272 GAIANAQLLLLSGI-GPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVY 330
G++ + +LL+ + G +L+ VG N G +M A
Sbjct: 285 GSLGSTELLVRARDTGTLPNLNS---------EVGAGWGPN----GNIMTARA------- 324
Query: 331 SQEMVFKYLVNRIGPLSNAGLWSFTG-----YIDTLQNTARPDLEIHLLYFQQNDIRNM- 384
++ + G+ ++ + + A + + L + +
Sbjct: 325 --NHMWNPTGAHQSSIPALGIDAWDNSDSSVFAEIAPMPAGLETWVSLYLAITKNPQRGT 382
Query: 385 --YLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTT 442
Y A R TR + A+ A +N +R T
Sbjct: 383 FVYDAATDRAKLNWTRDQNAPAVNAAKALFDRINKAN--GTIYRYDLFGTQLKAFADDFC 440
Query: 443 SNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAI-------ITQSDAISYM 495
+P+G ++G +V G K L V D S++P ++ IT
Sbjct: 441 YHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT-------A 487
Query: 496 IGEKCADLV 504
+ E+ + +
Sbjct: 488 LAERNVERI 496
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 102 bits (254), Expect = 3e-23
Identities = 84/530 (15%), Positives = 149/530 (28%), Gaps = 95/530 (17%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTP----------- 47
GD +++G+ G V A RL++ + + ++E G DTP
Sbjct: 3 SRTL-ADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGML 60
Query: 48 ------IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQN 101
+ V + F + R + IK+ G+G+GG S V
Sbjct: 61 NPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNG 120
Query: 102 ILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF 161
+ +E + KYF ++ G F
Sbjct: 121 GMAVTPKRNYFEEILPS---VDSNEMYNKYFPRAN-----------TGLGVNNIDQ-AWF 165
Query: 162 KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR------------YGLR 209
++ E +AQ G+ N + E G +
Sbjct: 166 ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGK 225
Query: 210 FSAADAYLTPIAGKRTNLYVLKRSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKE 266
S YL A L + +VTKV + +E ++ +G V +V
Sbjct: 226 KSLDKTYL-AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADR 284
Query: 267 VILTAGAIANAQLLLLSGI-GPKAHLDEVKIPVKQDLRVGENLKLNA-QFTGPVMAFSAP 324
V AG++ ++LL+ G +L +VGE N G
Sbjct: 285 VFFAAGSVGTSKLLVSMKAQGHLPNLSS---------QVGEGWGNNGNIMVGRANHMWDA 335
Query: 325 LKRT--------VYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYF 376
+ + + I PL + Y+ +N R + +
Sbjct: 336 TGSKQATIPTMGIDNWADPTAPIFAEIAPLPAGLETYVSLYLAITKNPERARFQFNSGTG 395
Query: 377 QQN-DIRNMYLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYI 435
+ + I + I GT+ +L W
Sbjct: 396 KVDLTWAQSQNQKGIDMAKKVFD-----KINQKEGTIYRTDLFGVYYKTWG--------- 441
Query: 436 RHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAI 485
T +P+G V++ ++ GL V D S++P +
Sbjct: 442 ---DDFTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNV 482
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 84.9 bits (209), Expect = 1e-17
Identities = 43/321 (13%), Positives = 86/321 (26%), Gaps = 34/321 (10%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLS----LSEFDH 66
+D++IVG+ GC A L + KV + + G + + + +F +
Sbjct: 47 YDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVN 105
Query: 67 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY------ 120
+ + ++ + V+N + +
Sbjct: 106 VIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMS 165
Query: 121 NGWG------YDETLKYFVKSEDYRS-----VIYNESKAVHGTQGYLPVGLFKNKENNII 169
W E VK + +Y ++++ T I
Sbjct: 166 TAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKE--------SI 217
Query: 170 REIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYV 229
R + Y +D + + +
Sbjct: 218 RHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNL 277
Query: 230 LKRSKVTKVIINDQN-VATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGP 287
+V+ N N + + G+ + A +LTAGA+ N QLL+ SG G
Sbjct: 278 FPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSGFGQ 336
Query: 288 KAHLDEVKIPVKQDLRVGENL 308
+ P +G +
Sbjct: 337 LGRPNPANPPELLPS-LGSYI 356
Score = 38.7 bits (89), Expect = 0.004
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 442 TSNPVGTVMMGN-ADDPNAVVTPDLKVKGIKGLRVADISVLPNA 484
+ GT MG + N V D +V G K L + +P A
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTA 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 3e-08
Identities = 69/366 (18%), Positives = 113/366 (30%), Gaps = 114/366 (31%)
Query: 50 SRIPGMSSVL--SLSEFDHAYLA-----------EPSQFAGLGVRNARIK------ITAG 90
S++ VL L+EF++ YL L IK I A
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 91 KGL--GGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKA 148
+ +SA L++ + + A G G G + YF E+ R +Y
Sbjct: 135 RPFDKKSNSA----LFRAVGEGNAQLVAIFG--GQGNTDD--YF---EELRD-LYQT--- 179
Query: 149 VHGTQGYLPVGLFKNKENNIIREIFETSAQELGY--PCPKDMNDRY---VDV-GFAELPG 202
Y ++ ++ + SA+ L D + +++ + E P
Sbjct: 180 ------YHV----------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 203 MTRYGLRFSAADAYLT--PIAGKRTNLYVLKRSKVT-KVIINDQNVATGVEYVNSKGETV 259
T YL PI+ + L VT K++ G KG T
Sbjct: 224 NT-------PDKDYLLSIPISCPLIGVIQLAHYVVTAKLL----GFTPGELRSYLKGATG 272
Query: 260 RVTANKEVILTAGAIANAQ------------LLLLSGIGPKAHLD--EVKIP---VKQDL 302
++TA AIA + +L IG + + +P ++ L
Sbjct: 273 HSQG----LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 303 RVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYL--VNRIGPLSNAGLWSFTGYIDT 360
E + P M L + +QE V Y+ N P I +
Sbjct: 329 ENNEGVP------SP-M-----LSISNLTQEQVQDYVNKTNSHLPAGKQ------VEI-S 369
Query: 361 LQNTAR 366
L N A+
Sbjct: 370 LVNGAK 375
Score = 43.5 bits (102), Expect = 2e-04
Identities = 53/315 (16%), Positives = 85/315 (26%), Gaps = 128/315 (40%)
Query: 293 EVKIPVKQDL-RVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGL 351
E + V + L+ QF P + E P + A L
Sbjct: 17 EHVLLVPTASFFIASQLQ--EQFN---KILPEPTEGFAADDE-----------PTTPAEL 60
Query: 352 WS-FTGYIDTL-----QNTARPDLEIHLLYFQQ-----NDI------------------- 381
F GY+ +L L + L F+ NDI
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 382 ---RNMYLAT--------------LIR----------------GT--DYITRLEQ----- 401
+N A L R G DY L
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 402 ----TEAIRLAGGTLMSL---NLEACSQYPW-RSTHSWTCYIRHLTTT------TSNPVG 447
+ I+ + TL L L+A + + W + + + T S P+
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPSNTPDKDYLLSIPIS 237
Query: 448 TVMMGNADDPNAVVTPDLKVKG---------IKGLRVADISVLPNAIITQSD-------- 490
++G + VVT K+ G +KG ++ I ++D
Sbjct: 238 CPLIGVIQLAHYVVT--AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 491 ---AISYM--IGEKC 500
AI+ + IG +C
Sbjct: 296 VRKAITVLFFIGVRC 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 56/388 (14%), Positives = 102/388 (26%), Gaps = 101/388 (26%)
Query: 55 MSSVLSLSEFDHAYLAEPSQFAGLGVRNAR--IKITAGKGLGGSSAVQNIL-------YQ 105
S+LS E DH + V K VQ + Y+
Sbjct: 42 PKSILSKEEIDHI-IMSKDA-----VSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYK 92
Query: 106 ----------RGTSYDYENFAKLGYNGWGYDETL-KYFVKSEDY----RSVIYNESKA-- 148
R S + + + ++ KY V R + A
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 149 --VHGTQGY------LPVGLFKNKENNIIREIF------ETSAQELGYPCPKDMNDRY-- 192
+ G G L V L + + +IF S + + + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQKLLYQ 208
Query: 193 VDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVE 250
+D + + LR + A L L K + +++ + QN
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAEL-------RRLLKSKPYENCLLVLLNVQNAKA-WN 260
Query: 251 YVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKL 310
N + + T K+V A + LD + + D E L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHIS----------LDHHSMTLTPD----EVKSL 306
Query: 311 NAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLW-SFTGYIDTLQNTARPD- 368
++ L R E++ P + + S + T N +
Sbjct: 307 LLKYLD--CRPQD-LPR-----EVL------TTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 369 ------LEIHLLYFQQNDIRNMYLATLI 390
+E L + + R M+ +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSV 380
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 43.1 bits (102), Expect = 2e-04
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 229 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 280
S+V K+++ND + G + A K V+L G N +++
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMI 318
Score = 31.2 bits (71), Expect = 0.92
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 46
+++VGA +AG + + + V+L++ +GG++
Sbjct: 122 TQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFSGGNS 160
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 42.4 bits (100), Expect = 3e-04
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG 272
+ N+ + ++ +V+ +D+ G+ V A VIL G
Sbjct: 266 VKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKA-DAVILATG 314
Score = 33.1 bits (76), Expect = 0.25
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 46
D+++VG+ AG A ++ S KV+LIE GG+
Sbjct: 127 VDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVIGGNA 165
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 41.3 bits (96), Expect = 6e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
FD+ +VG+ G +A R++ +VL++E
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 40.9 bits (96), Expect = 8e-04
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 229 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 280
+ S+V +++ + TGV + A V++ AG N + +
Sbjct: 272 IRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERV 323
Score = 32.0 bits (73), Expect = 0.55
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 46
D++I+G+ AG A + + KV+L+E GG+T
Sbjct: 127 TDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIPGGNT 165
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 39.6 bits (93), Expect = 0.002
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47
+ +D+++VG G A ++ LK L+IE +
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEIG 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 299 KQDLRVGEN-LKLNAQFTGPVMAFSAPLK 326
KQ L+ + LKL A + P +A A ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 39.5 bits (91), Expect = 0.002
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
MT S D++++GA G A RL+++ +++++ GG
Sbjct: 4 MTHPDIS---VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 38.5 bits (90), Expect = 0.004
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 229 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG 272
+V ++ +D G+ G+ V V A + V+L G
Sbjct: 219 AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATG 261
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 46
D+++ G AG + + + VL++E GG T
Sbjct: 42 ADVVVAGYGIAGVAASIEAAR-AGADVLVLERTSGWGGAT 80
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 38.2 bits (88), Expect = 0.005
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
FD +IVGA AG VLA RL+ S +VL+++
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 38.3 bits (89), Expect = 0.005
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
+D++I+G AG A +LS LK+LL+++
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPW 40
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 37.4 bits (86), Expect = 0.007
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
D+++VGA +AG A +S+ +++V +IE
Sbjct: 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 37.7 bits (87), Expect = 0.007
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
+D IIVG+ G V AN L + + KVL+IE
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 37.3 bits (86), Expect = 0.009
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
I+IVGA +G V+ +L+E +V +I+
Sbjct: 4 KKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQ 34
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 37.4 bits (85), Expect = 0.011
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYL 69
FDI+++GA G A L +++ +LL+E GG V + +
Sbjct: 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQE 96
Query: 70 AEPSQ 74
A+
Sbjct: 97 AQAEW 101
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 37.2 bits (87), Expect = 0.012
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
D +++GA G ++L L + +
Sbjct: 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 36.5 bits (85), Expect = 0.019
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 51
D++I G G +LA L +V+++E +
Sbjct: 7 IDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRERAING 46
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 36.5 bits (84), Expect = 0.020
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
+ FD+I++G G LA+ ++ +VLL+E
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLERE 39
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 35.8 bits (81), Expect = 0.027
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
I I+G AG A L+ + +V L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTA-AGHQVHLFDKS 34
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione
reductase type II family, thiazole synthase,
mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces
cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 35.6 bits (81), Expect = 0.033
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 43
D+IIVGA ++G A +++ LKV +IE+
Sbjct: 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 99
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 35.3 bits (80), Expect = 0.041
Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 8/138 (5%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 70
+D+II+G C+L+ LS K+L+++ + G ++ L+L+ + +
Sbjct: 21 YDVIILGTGLKECILSGLLS-HYGKKILVLDR------NPYYGGETASLNLTNLYNTFKP 73
Query: 71 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 130
+ + + G K + + IL + +Y + + + +
Sbjct: 74 KENIPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRV-TNYLEWLVVEGSYVYQHQKKG 132
Query: 131 YFVKSEDYRSVIYNESKA 148
+ + V + +A
Sbjct: 133 FLTSEKFIHKVPATDMEA 150
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 35.3 bits (82), Expect = 0.043
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
+D+++VGA AG +R L V EA
Sbjct: 22 YDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG 55
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 35.1 bits (81), Expect = 0.044
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
D++++GA AG V A+ +++ S KV ++E
Sbjct: 6 VDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQ 37
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 35.2 bits (82), Expect = 0.046
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
D+++VGA +G RL E V +IE GD
Sbjct: 17 VDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 35.3 bits (82), Expect = 0.051
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
D +++GA G A +++ + +KVL IEAG D
Sbjct: 10 LDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 35.0 bits (80), Expect = 0.055
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
+ P + I+G AG V L + V + E
Sbjct: 14 LVPRGSHMTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERS 55
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 34.8 bits (79), Expect = 0.064
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
I+I+GA G A RL+E+ L E GG
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 34.7 bits (78), Expect = 0.070
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 12 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGD 45
++IVGA G + A L L + + + D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 34.6 bits (79), Expect = 0.088
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGGDTPIHSRIPGMS 56
MT Y S D++IVGA AG + A LSE LKV +I+ + + G+
Sbjct: 1 MTKY--SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ 58
Query: 57 S 57
Sbjct: 59 C 59
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 34.4 bits (79), Expect = 0.093
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
FD ++VGA G A L S VL+++AG
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 34.0 bits (77), Expect = 0.099
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 43
DI+IVGA + G A LS + L++ ++EAG
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 33.8 bits (78), Expect = 0.14
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLI 40
D++I+G+ AAG LA RL++ +V+++
Sbjct: 9 CDVLIIGSGAAGLSLALRLAD--QHQVIVL 36
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 33.3 bits (75), Expect = 0.19
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE----FDH 66
+D+I++G C+L+ LS V KVL I+ G ++ ++LS+ F
Sbjct: 12 YDVIVLGTGITECILSGLLS-VDGKKVLHIDK------QDHYGGEAASVTLSQLYEKFKQ 64
Query: 67 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD 126
+++ + + G K L + + NIL + Y +F ++ +
Sbjct: 65 NPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVT-RYVDFKQVSGS----- 118
Query: 127 ETLKYFVKSEDYRSVIYNESKAVH 150
Y K V NE +A+
Sbjct: 119 ----YVFKQGKIYKVPANEIEAIS 138
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 33.3 bits (76), Expect = 0.20
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 54
D+++VG +G A L + S L V+++EA R+ G
Sbjct: 6 DVVVVGGGISGMAAAKLLHD-SGLNVVVLEA------RDRVGG 41
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 33.3 bits (76), Expect = 0.20
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
+D I+VG +G A L+ + KVLL+E GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGERLGG 38
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 33.4 bits (76), Expect = 0.21
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSS 57
D++IVG AG LA +L+ ++ ++E + G++
Sbjct: 34 DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIAC 79
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 32.5 bits (73), Expect = 0.38
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
+II+GA AG A+ L + L++EA GG
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 31.9 bits (73), Expect = 0.47
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 51
+D+II+G+ + G + + L VL+ +A P H
Sbjct: 3 YDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAH--MPPHQH 40
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 32.0 bits (73), Expect = 0.48
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 12 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSR 51
D++I+G G LA L+ V L++E T H R
Sbjct: 28 DVLILGGGPVGMALALDLAHRQVG---HLVVEQTDGTITHPR 66
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 32.1 bits (73), Expect = 0.56
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 11 FDIIIVGASAAGC---VLANRLSEVSSLKVLLIE 41
DI+I+G +GC A +++ LKV L+E
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 31.7 bits (72), Expect = 0.60
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGDTPIHS 50
D++IVGA AG A RL ++++ L+V L+E H+
Sbjct: 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT 80
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 31.8 bits (71), Expect = 0.61
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAY 68
+D+I++G C+L+ +S V+ KVL ++ + G SS ++ E +
Sbjct: 7 YDVIVLGTGLTECILSGIMS-VNGKKVLHMDR------NPYYGGESSSITPLEELYKR 57
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 31.8 bits (72), Expect = 0.63
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
I I+GA AG L + ++E GG
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 31.7 bits (72), Expect = 0.66
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 13 IIIVGASAAGCVLANRLSE-VSSLKVLLIEA 42
+++VG G A + S++V LIE
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 31.3 bits (72), Expect = 0.67
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
D I++GA G +A L+ +VL+ EA
Sbjct: 5 IDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 31.6 bits (72), Expect = 0.71
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 12 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSR 51
D+++VGA G A L+ V VL++E + R
Sbjct: 7 DVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPGLSPYPR 45
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 31.1 bits (71), Expect = 0.88
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 12 DIIIVGASAAGCVLAN--RLSEVSSLKVLLIEAGGDTPIHSRIPGMS 56
+I+VGA AG +LA RL V V+++E SR G +
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFT 57
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 30.9 bits (70), Expect = 0.99
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 51
+D+++VG G A +++E +VL++E T +
Sbjct: 5 YDVVVVGGGPVGLATAWQVAE-RGHRVLVLERH--TFFNEN 42
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A
{Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*
Length = 290
Score = 30.6 bits (70), Expect = 1.1
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 221 AGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280
G + +Y + V I + +E T + V + + +
Sbjct: 188 KGWTSFIYTISGD----VYIGPDDAQQKIE----PHHTAVLGEGDSVQVENKDPKRSHFV 239
Query: 281 LLSG 284
L++G
Sbjct: 240 LIAG 243
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 30.8 bits (70), Expect = 1.2
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 12 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSRIPGMS 56
D+++VG G +LA L V L++E + H R +
Sbjct: 51 DVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALH 94
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 30.7 bits (70), Expect = 1.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 12 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSRIPGMS 56
+I+VGA AG +LA L V V+++E + SR G +
Sbjct: 13 AVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFT 56
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 30.5 bits (70), Expect = 1.3
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
+ II+GA AAG A +L++ V + +
Sbjct: 5 SENIIIGAGAAGLFCAAQLAK-LGKSVTVFD 34
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 30.2 bits (69), Expect = 1.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
+D+I++G +G + A +E VLL++ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKG 58
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 30.2 bits (68), Expect = 1.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
+I+VGA +G A RLSE +L++EA GG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.4 bits (68), Expect = 1.6
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 11 FDIIIVGASAAGCVLANRLSEVS-----SLKVLLIE 41
D+++VG C A + K+LL++
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 30.1 bits (68), Expect = 1.7
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 13 IIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDTPIHSRIPG 54
++++G G A L + LK+ LI D P P
Sbjct: 5 VVVIGGGVGGIATAYNLRNLMPDLKITLIS---DRPYFGFTPA 44
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 30.4 bits (69), Expect = 1.7
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 51
FD+I+VGA + G +L++ +K LL++A P H+
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD--PPHTN 41
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 30.2 bits (69), Expect = 1.8
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
D++I+GA AAG + A + +VL+I+
Sbjct: 28 QDVVIIGAGAAGMMCAIEAGK-RGRRVLVIDHA 59
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 30.1 bits (66), Expect = 1.9
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 13 IIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIH---SRIPGMSSVLSLSEFDHA 67
++IVG AG + A+ L + V L+E+G I + + D
Sbjct: 5 VVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDER 64
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 30.1 bits (68), Expect = 2.0
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
D+ IVGA +G A L + + L V +IEA GG
Sbjct: 7 DVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRVGG 42
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus,
mitosis, anaphase, cell cycle, CE division, spindle
checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB:
2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Length = 206
Score = 29.3 bits (65), Expect = 2.4
Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 16/134 (11%)
Query: 98 AVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHG--TQGY 155
+ +ILYQRG Y E F ++ G + + N + + +
Sbjct: 28 GINSILYQRGI-YPSETFTRVQKYG-----LTLLVTTDLELIKYLNNVVEQLKDWLYKSS 81
Query: 156 LP--VGLFKNKENNIIRE--IFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFS 211
+ V + N E+ + E F+ + + + E+ + R + +
Sbjct: 82 VQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKSQKAI-QDEIRSVIR---QIT 137
Query: 212 AADAYLTPIAGKRT 225
A +L + +
Sbjct: 138 ATVTFLPLLEVSCS 151
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 29.4 bits (67), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 11 FDIIIVGASAAG----CVLANRLSEVSSLKVLLIEAGG 44
FD+II+G S AG L R + +LL++AG
Sbjct: 3 FDVIIIGGSYAGLSAALQLG-R----ARKNILLVDAGE 35
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 29.7 bits (66), Expect = 2.6
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGGDTPIHSRIPGM 55
MT + D+I VG + LA L E +L+VL ++ GD H
Sbjct: 21 MTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH---GNT 76
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 29.5 bits (66), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
++IVGA AG A L+ + +V ++EA GG
Sbjct: 35 HVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERPGG 70
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 29.6 bits (65), Expect = 2.9
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
+ + +II+G+ +G A +L + V L+EA
Sbjct: 269 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEA 309
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 29.5 bits (64), Expect = 3.1
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 12 DIIIVGASAAGCVLANRLSEV-------SSLKVLLIEAGGDTPIHSRIPG 54
I IVG A G L + S + V + EA D+ +H R
Sbjct: 58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGI 107
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
++++G AG A L + + KV ++EA GG
Sbjct: 13 SVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRPGG 48
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 29.3 bits (64), Expect = 3.4
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIH---SRIPGM 55
M+ + I+IVG AG + A+ L + + + L++A + + IP +
Sbjct: 21 MSGKIDK-----ILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNL 75
Query: 56 SSVL 59
+
Sbjct: 76 QTAF 79
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 29.1 bits (65), Expect = 3.4
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
+D+I++G G L+ + K LL+EA GG
Sbjct: 40 WDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRIGG 76
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 29.3 bits (64), Expect = 3.7
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIH---SRIPGM 55
M +K+ I+IVG AG + A+ L + LIE+ I + IP +
Sbjct: 1 MNKPIKN-----IVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSL 55
Query: 56 SSVL 59
V
Sbjct: 56 QKVF 59
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 29.3 bits (65), Expect = 3.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 44
+ ++GA +G A +L L V + EA GG
Sbjct: 15 RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAGG 50
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 28.7 bits (65), Expect = 4.0
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 13 IIIVGASAAGCVLANRLSEVSSLKVLLIE 41
+II+G LA + V++I
Sbjct: 3 VIIIGGETTAYYLARSMLS-RKYGVVIIN 30
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 29.1 bits (64), Expect = 4.1
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
+ + +II+G+ +G A +L + V L+EA
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEA 138
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 29.0 bits (66), Expect = 4.3
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
+ ++G+ A A + E +V LIE G
Sbjct: 5 VQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG 36
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 28.9 bits (65), Expect = 4.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 13 IIIVGASAAGCVLANRLSEV--SSLKVLLIE 41
++I+GA G A + E S +V LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 28.8 bits (64), Expect = 5.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 46
D+ I+G AG + L L V LIE GGD
Sbjct: 110 DVAIIGGGPAG--IGAALELQQYLTVALIEERGWLGGDM 146
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 28.3 bits (64), Expect = 5.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 9/37 (24%)
Query: 11 FDIIIVGASAAG----CVLANRLSEVSSLKVLLIEAG 43
D ++GA AG VL R + ++ L +
Sbjct: 7 IDCAVIGAGPAGLNASLVLG-R----ARKQIALFDNN 38
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 28.3 bits (63), Expect = 6.0
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
++IVGA G A L+ V +++
Sbjct: 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 28.4 bits (63), Expect = 6.5
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44
++ +VG +G +A+ L +L+E+
Sbjct: 18 NVAVVGGGISGLAVAHHLRS-RGTDAVLLESSA 49
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 27.9 bits (63), Expect = 7.3
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43
++ +++G G +A L++ + L E+G
Sbjct: 18 YEAVVIGGGIIGSAIAYYLAK-ENKNTALFESG 49
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 28.0 bits (61), Expect = 9.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEP 72
I+IVGA AG V + L+ V ++EA + R+ G + + + A+P
Sbjct: 47 ILIVGAGIAGLVAGDLLTRA-GHDVTILEANAN-----RVGGRIKTFHAKKGEPSPFADP 100
Query: 73 SQFAGLG 79
+Q+A G
Sbjct: 101 AQYAEAG 107
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 28.0 bits (63), Expect = 9.3
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45
D +++GA AG LS +V+++E
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHG--RVVVLEREAQ 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,666,222
Number of extensions: 471007
Number of successful extensions: 1222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 139
Length of query: 512
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 414
Effective length of database: 3,965,535
Effective search space: 1641731490
Effective search space used: 1641731490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)