RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10590
(344 letters)
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
Length = 94
Score = 104 bits (262), Expect = 4e-28
Identities = 48/66 (72%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 193 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG-AGNVIPGGATLT 251
DR +PF FTLG GQVI GWD+GL M VGEKRKLTIPP LAYG+ G AG VIP ATL
Sbjct: 29 KDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPELAYGEEGLAGGVIPPNATLV 88
Query: 252 FEVELL 257
FEVELL
Sbjct: 89 FEVELL 94
Score = 66.1 bits (162), Expect = 7e-14
Identities = 31/40 (77%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Query: 1 MCVGEKRKLTIPPALAYGDRG-AGNVIPGGATLTFEVELL 39
M VGEKRKLTIPP LAYG+ G AG VIP ATL FEVELL
Sbjct: 55 MKVGEKRKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 104 bits (260), Expect = 2e-26
Identities = 44/75 (58%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 185 SGPKHDELHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVI 244
G D +DR QP F LG VI GWD+GL M VG KRKLTIPP LAYG+RG VI
Sbjct: 132 DGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVI 189
Query: 245 PGGATLTFEVELLSI 259
P +TL FEVELL +
Sbjct: 190 PPNSTLVFEVELLDV 204
Score = 70.1 bits (172), Expect = 3e-14
Identities = 28/41 (68%), Positives = 31/41 (75%)
Query: 1 MCVGEKRKLTIPPALAYGDRGAGNVIPGGATLTFEVELLSI 41
M VG KRKLTIPP LAYG+RG VIP +TL FEVELL +
Sbjct: 164 MKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 206
Score = 70.6 bits (173), Expect = 3e-14
Identities = 37/65 (56%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 195 RDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGGATLTFEV 254
R +P F V VI GW + LT M VG K +LTIP LAYG+RGAG IP +TL FEV
Sbjct: 143 RGEPAEFP--VNGVIPGWIEALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEV 200
Query: 255 ELLSI 259
ELL I
Sbjct: 201 ELLEI 205
Score = 55.2 bits (133), Expect = 5e-09
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 1 MCVGEKRKLTIPPALAYGDRGAGNVIPGGATLTFEVELLSI 41
M VG K +LTIP LAYG+RGAG IP +TL FEVELL I
Sbjct: 165 MPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEI 205
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 61.3 bits (149), Expect = 9e-11
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 186 GPKHDELHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIP 245
G + D + R +P +F L VI GW +GL + G K KL IPP LAYG G IP
Sbjct: 178 GKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IP 234
Query: 246 GGATLTFEVELLSI 259
+TL F+VELL +
Sbjct: 235 ANSTLVFDVELLDV 248
Score = 45.1 bits (107), Expect = 2e-05
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 4 GEKRKLTIPPALAYGDRGAGNVIPGGATLTFEVELLSI 41
G K KL IPP LAYG G IP +TL F+VELL +
Sbjct: 212 GGKIKLVIPPELAYGKAGVPG-IPANSTLVFDVELLDV 248
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 46.8 bits (112), Expect = 3e-07
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 131 VFKEIDSDADKQLSREEVSEYLKKQMVAAEGSEVEEIFQHEDKDKNGFISHDEF 184
F+ D D D +S +E+ LK E++E+ + DKD +G I +EF
Sbjct: 5 AFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEF 58
Score = 37.9 bits (89), Expect = 3e-04
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 50 VFKEIDSDADKQLSREEVSEYLKKQMVAAEGSEGAEDVKHMLEEHDKLVEEIFQHEDKDK 109
F+ D D D +S +E+ LK ++ ++E+ + DKD
Sbjct: 5 AFRLFDKDGDGTISADELKAALKS---------------LGEGLSEEEIDEMIREVDKDG 49
Query: 110 NGFISHDEF 118
+G I +EF
Sbjct: 50 DGKIDFEEF 58
Score = 37.9 bits (89), Expect = 3e-04
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 268 VFKEIDSDADKQLSREEVSEYLKKQMVAAEGSEGAEDVKHMLEEHDKLVEEIFQHEDKDK 327
F+ D D D +S +E+ LK ++ ++E+ + DKD
Sbjct: 5 AFRLFDKDGDGTISADELKAALKS---------------LGEGLSEEEIDEMIREVDKDG 49
Query: 328 NGFISHDEF 336
+G I +EF
Sbjct: 50 DGKIDFEEF 58
Score = 31.7 bits (73), Expect = 0.052
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 163 EVEEIFQHEDKDKNGFISHDEFS 185
E+ E F+ DKD +G IS DE
Sbjct: 1 ELREAFRLFDKDGDGTISADELK 23
Score = 30.2 bits (69), Expect = 0.20
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 316 VEEIFQHEDKDKNGFISHDEFS 337
+ E F+ DKD +G IS DE
Sbjct: 2 LREAFRLFDKDGDGTISADELK 23
>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 45.7 bits (109), Expect = 5e-06
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 190 DELHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDR 238
D + P TF +G GQ+I G ++ L VGE+ + IPP A+G+
Sbjct: 24 DTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY 72
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 38.5 bits (90), Expect = 2e-04
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 133 KEIDSDADKQLSREEVSEYLKKQMVAAEGSEVEEIFQHE----DKDKNGFISHDEF 184
K +D D D + EE+ + LK + EVEE+ + + DKD +G IS +EF
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEF 56
Score = 38.1 bits (89), Expect = 3e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 52 KEIDSDADKQLSREEVSEYLKKQMVAAEGSEGAEDVKHMLEEHDKLVEEIFQHEDKDKNG 111
K +D D D + EE+ + LK A +K EE ++L+E F DKD +G
Sbjct: 1 KLLDKDGDGYIDVEELRKLLK-----------ALGLKLTDEEVEELIEADFNEIDKDGDG 49
Query: 112 FISHDEF 118
IS +EF
Sbjct: 50 RISFEEF 56
Score = 38.1 bits (89), Expect = 3e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 270 KEIDSDADKQLSREEVSEYLKKQMVAAEGSEGAEDVKHMLEEHDKLVEEIFQHEDKDKNG 329
K +D D D + EE+ + LK A +K EE ++L+E F DKD +G
Sbjct: 1 KLLDKDGDGYIDVEELRKLLK-----------ALGLKLTDEEVEELIEADFNEIDKDGDG 49
Query: 330 FISHDEF 336
IS +EF
Sbjct: 50 RISFEEF 56
Score = 28.5 bits (64), Expect = 0.75
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 106 DKDKNGFISHDEF----------SGPKHDELGLPNVFKEIDSDADKQLSREEVSEYL 152
DKD +G+I +E + E + F EID D D ++S EE E +
Sbjct: 4 DKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 36.5 bits (85), Expect = 0.007
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 29/145 (20%)
Query: 50 VFKEIDSDADKQLSREEVSEYLKKQMVAAEGSEGAED-VKHMLEEHDKLVEEIFQHEDKD 108
F+ D D+D + R E+ + L+ + G +E + + EE D
Sbjct: 25 AFQLFDRDSDGLIDRNELGKILR-----SLGFNPSEAEINKLFEEIDA------------ 67
Query: 109 KNGFISHDEF---------SGPKHDELGLPNVFKEIDSDADKQLSREEVSEYLKKQMVAA 159
N + EF G K +EL FK D D D +S E+ LK
Sbjct: 68 GNETVDFPEFLTVMSVKLKRGDKEEEL--REAFKLFDKDHDGYISIGELRRVLKSLGERL 125
Query: 160 EGSEVEEIFQHEDKDKNGFISHDEF 184
EVE++ + D+D +G I ++EF
Sbjct: 126 SDEEVEKLLKEYDEDGDGEIDYEEF 150
Score = 27.7 bits (62), Expect = 5.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 15/68 (22%)
Query: 269 FKEIDSDADKQLSREEVSEYLKKQMVAAEGSEGAEDVKHMLEEHDKLVEEIFQHEDKDKN 328
FK D D D +S E+ LK G ++ EE VE++ + D+D +
Sbjct: 98 FKLFDKDHDGYISIGELRRVLKS-----LGERLSD------EE----VEKLLKEYDEDGD 142
Query: 329 GFISHDEF 336
G I ++EF
Sbjct: 143 GEIDYEEF 150
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 33.2 bits (77), Expect = 0.009
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 163 EVEEIFQHEDKDKNGFISHDEF 184
E++E F+ DKD +G IS +EF
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEF 22
Score = 31.3 bits (72), Expect = 0.036
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 98 VEEIFQHEDKDKNGFISHDEF 118
++E F+ DKD +G IS +EF
Sbjct: 2 LKEAFKEFDKDGDGKISFEEF 22
Score = 31.3 bits (72), Expect = 0.036
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 316 VEEIFQHEDKDKNGFISHDEF 336
++E F+ DKD +G IS +EF
Sbjct: 2 LKEAFKEFDKDGDGKISFEEF 22
Score = 24.7 bits (55), Expect = 7.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 49 NVFKEIDSDADKQLSREEVSEYLKKQ 74
FKE D D D ++S EE E LKK
Sbjct: 4 EAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 24.7 bits (55), Expect = 7.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 130 NVFKEIDSDADKQLSREEVSEYLKKQ 155
FKE D D D ++S EE E LKK
Sbjct: 4 EAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 24.7 bits (55), Expect = 7.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 267 NVFKEIDSDADKQLSREEVSEYLKKQ 292
FKE D D D ++S EE E LKK
Sbjct: 4 EAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 37.0 bits (86), Expect = 0.012
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 82 EGAEDVKHMLEEHDKLVEEIFQHEDKDKNGFISHDEFSGPKHDELGLPNVFKEIDSDADK 141
EG E H +EIF+ D D +GFI+ +E+ LG VF +D + D
Sbjct: 327 EGGEAFTHA-------AQEIFRLYDLDGDGFITREEW-------LGSDAVFDALDLNHDG 372
Query: 142 QLSREEVS 149
+++ EE+
Sbjct: 373 KITPEEMR 380
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 32.4 bits (75), Expect = 0.018
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 163 EVEEIFQHEDKDKNGFISHDEF 184
E++E F+ DKD +G I +EF
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEF 22
Score = 30.4 bits (70), Expect = 0.084
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 98 VEEIFQHEDKDKNGFISHDEF 118
++E F+ DKD +G I +EF
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEF 22
Score = 30.4 bits (70), Expect = 0.084
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 316 VEEIFQHEDKDKNGFISHDEF 336
++E F+ DKD +G I +EF
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEF 22
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 36.4 bits (84), Expect = 0.021
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 135 IDSDADKQLSREEVSEYLKK--QMVAAEGSEVEEIFQHEDKDKNGFISHDEFS 185
+D D D QLS E S+ +K +VAA + EE+F+ D + +G ++ DE +
Sbjct: 188 VDYDEDGQLSFSEFSDLIKAFGNLVAAN--KKEELFKAADLNGDGVVTIDELA 238
Score = 32.1 bits (73), Expect = 0.47
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
Query: 40 SIGDQVTTTNVFKE-----IDSDADKQLSREEVSEYLKKQMVAAEGSEGAEDVKHMLEEH 94
SI D V T F +D D D QLS E S+ +K A G+ A + K
Sbjct: 169 SIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK-----AFGNLVAANKK------ 217
Query: 95 DKLVEEIFQHEDKDKNGFISHDEFS 119
EE+F+ D + +G ++ DE +
Sbjct: 218 ----EELFKAADLNGDGVVTIDELA 238
Score = 32.1 bits (73), Expect = 0.47
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
Query: 258 SIGDQVTTTNVFKE-----IDSDADKQLSREEVSEYLKKQMVAAEGSEGAEDVKHMLEEH 312
SI D V T F +D D D QLS E S+ +K A G+ A + K
Sbjct: 169 SIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK-----AFGNLVAANKK------ 217
Query: 313 DKLVEEIFQHEDKDKNGFISHDEFS 337
EE+F+ D + +G ++ DE +
Sbjct: 218 ----EELFKAADLNGDGVVTIDELA 238
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 31.8 bits (73), Expect = 0.055
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 99 EEIFQHEDKDKNGFISHDE----FSGPKHDELGLPNVFKEIDSDADKQLSREE 147
++IF+ D D +G IS DE L ++ D+D D +L +EE
Sbjct: 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEE 54
Score = 27.6 bits (62), Expect = 1.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 129 PNVFKEIDSDADKQLSREEVSEYLKKQMVAAEGSEVEEIFQHEDKDKNGFISHDEFS 185
+F+ +D D D +S +E +L K + S + +I+ D DK+G + +EF+
Sbjct: 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPR--SVLAQIWDLADTDKDGKLDKEEFA 56
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 29.1 bits (66), Expect = 0.28
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 163 EVEEIFQHEDKDKNGFISHDEF 184
E+ E F+ DKD +G+IS +E
Sbjct: 1 ELREAFKLFDKDGDGYISAEEL 22
Score = 27.9 bits (63), Expect = 0.69
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 98 VEEIFQHEDKDKNGFISHDEF 118
+ E F+ DKD +G+IS +E
Sbjct: 2 LREAFKLFDKDGDGYISAEEL 22
Score = 27.9 bits (63), Expect = 0.69
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 316 VEEIFQHEDKDKNGFISHDEF 336
+ E F+ DKD +G+IS +E
Sbjct: 2 LREAFKLFDKDGDGYISAEEL 22
Score = 25.2 bits (56), Expect = 5.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 50 VFKEIDSDADKQLSREEVSEYLKK 73
FK D D D +S EE+ + L+
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRS 28
Score = 25.2 bits (56), Expect = 5.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 131 VFKEIDSDADKQLSREEVSEYLKK 154
FK D D D +S EE+ + L+
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRS 28
Score = 25.2 bits (56), Expect = 5.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 268 VFKEIDSDADKQLSREEVSEYLKK 291
FK D D D +S EE+ + L+
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRS 28
>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 156
Score = 31.2 bits (71), Expect = 0.34
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 190 DELHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYG 236
+ + +P F LG G + +G +Q L + VG+K+ ++ P A+G
Sbjct: 26 ESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFG 72
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in
proteins belonging to the Calgranulin subgroup of the
S100 family of EF-hand calcium-modulated proteins,
including S100A8, S100A9, and S100A12 . Note that the
S-100 hierarchy, to which this Calgranulin group
belongs, contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. These proteins
are expressed mainly in granulocytes, and are involved
in inflammation, allergy, and neuritogenesis, as well
as in host-parasite response. Calgranulins are
modulated not only by calcium, but also by other metals
such as zinc and copper. Structural data suggested that
calgranulins may exist in multiple structural forms,
homodimers, as well as hetero-oligomers. For example,
the S100A8/S100A9 complex called calprotectin plays
important roles in the regulation of inflammatory
processes, wound repair, and regulating zinc-dependent
enzymes as well as microbial growth.
Length = 88
Score = 29.2 bits (66), Expect = 0.73
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 43 DQVTTTNVFKEIDSDADKQLSREEVSEYLKKQMVAA 78
+Q +F+++D++ D QLS EE + K VAA
Sbjct: 49 NQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84
Score = 29.2 bits (66), Expect = 0.73
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 261 DQVTTTNVFKEIDSDADKQLSREEVSEYLKKQMVAA 296
+Q +F+++D++ D QLS EE + K VAA
Sbjct: 49 NQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84
Score = 27.3 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 124 DELGLPNVFKEIDSDADKQLSREEVSEYLKKQMVAA 159
++ + +F+++D++ D QLS EE + K VAA
Sbjct: 49 NQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 31.2 bits (71), Expect = 0.87
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 35 EVELLSIGDQVTTTNVFKEIDSDADKQLSREE-VSEYLKKQMVAAEGSEGAEDVKHMLEE 93
+V + + + FK ID D + + Y+ + M E SE EDV + EE
Sbjct: 365 DVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEE 424
Query: 94 HDKLVEEIFQHEDKDKNGF 112
++ ++ + +++D+
Sbjct: 425 YEAAEQDSYLDDEEDEEEM 443
Score = 31.2 bits (71), Expect = 0.87
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 253 EVELLSIGDQVTTTNVFKEIDSDADKQLSREE-VSEYLKKQMVAAEGSEGAEDVKHMLEE 311
+V + + + FK ID D + + Y+ + M E SE EDV + EE
Sbjct: 365 DVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEE 424
Query: 312 HDKLVEEIFQHEDKDKNGF 330
++ ++ + +++D+
Sbjct: 425 YEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|225755 COG3214, COG3214, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 400
Score = 30.9 bits (70), Expect = 0.91
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 70 YLKKQMVAAEGSEGAEDVKHMLEEHDKLVEEIFQHEDKDKNGFISHDEFSGPKH 123
++ +M+ AE + EEH +E++ +H + G + + G
Sbjct: 98 LIRHRMLRAEKGGRWKYRAAWGEEHAAEIEQLLRH--IAERGPVRAADLEGRGK 149
Score = 30.9 bits (70), Expect = 0.91
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 288 YLKKQMVAAEGSEGAEDVKHMLEEHDKLVEEIFQHEDKDKNGFISHDEFSGPKH 341
++ +M+ AE + EEH +E++ +H + G + + G
Sbjct: 98 LIRHRMLRAEKGGRWKYRAAWGEEHAAEIEQLLRH--IAERGPVRAADLEGRGK 149
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase
(trigger factor) [Posttranslational modification,
protein turnover, chaperones].
Length = 441
Score = 30.7 bits (70), Expect = 1.2
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 36/197 (18%)
Query: 131 VFKEIDSDADKQLS--REEVSEYLKKQMVAAEGSEVEEIFQHEDKDKNGFISHDEFSGPK 188
V + D D D++L R+ + + A G V D G + +EF G K
Sbjct: 129 VVEVTDEDVDEELEKLRKRFATLEPVEGAAENGDRV-------TIDFEGSVDGEEFEGGK 181
Query: 189 HDELHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKR--KLTIPPALAYGDRGAGNVIPG 246
+ F+ LG G+ I G++ L M GE++ K+T P D A +
Sbjct: 182 AEN-------FSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPE-----DYHAEEL--A 227
Query: 247 GATLTFEVELLSIGDQVTTTNVFKEIDSDADKQL----SREEVSEYLKKQMVAAEGSEGA 302
G TF+V++ + E+D + K+L + EE+ E L+K +
Sbjct: 228 GKEATFKVKVKEV-----KKRELPELDDEFAKKLGEEDTLEELKEKLRKNLERELKEATL 282
Query: 303 EDVKHMLEEHDKLVEEI 319
E K L D LVE
Sbjct: 283 EKRKEQLL--DALVEAN 297
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 29.7 bits (67), Expect = 1.3
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 99 EEIFQHEDKDKNGFISHDEFS------GPKHDELGLPNVFKEIDSDADKQLSREEVSEYL 152
+E F DKD +G I+ E G E L ++ E+D+D + + E +
Sbjct: 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLM 73
Query: 153 KKQMVAAEGS-EVEEIFQHEDKDKNGFISHDE 183
++M + E++E F+ D+D NGFIS E
Sbjct: 74 ARKMKDTDSEEEIKEAFKVFDRDGNGFISAAE 105
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 26.5 bits (60), Expect = 1.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 98 VEEIFQHEDKDKNGFISHDEF 118
++++F+ D + +G IS +E
Sbjct: 1 LKDLFRQFDTNGDGKISKEEL 21
Score = 26.5 bits (60), Expect = 1.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 164 VEEIFQHEDKDKNGFISHDEF 184
++++F+ D + +G IS +E
Sbjct: 1 LKDLFRQFDTNGDGKISKEEL 21
Score = 26.5 bits (60), Expect = 1.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 316 VEEIFQHEDKDKNGFISHDEF 336
++++F+ D + +G IS +E
Sbjct: 1 LKDLFRQFDTNGDGKISKEEL 21
>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2. The PB1 domain is a
modular domain mediating specific protein-protein
interaction which play a role in many critical cell
processes such as osteoclastogenesis, angiogenesis,
early cardiovascular development, and cell polarity. A
canonical PB1-PB1 interaction, which involves
heterodimerization of two PB1 domains, is required for
the formation of macromolecular signaling complexes
ensuring specificity and fidelity during cellular
signaling. The interaction between two PB1 domain
depends on the type of PB1. There are three types of
PB1 domains: type I which contains an OPCA motif,
acidic aminoacid cluster, type II which contains a
basic cluster, and type I/II which contains both an
OPCA motif and a basic cluster. Interactions of PB1
domains with other protein domains have been described
as noncanonical PB1-interactions.
Length = 97
Score = 28.3 bits (64), Expect = 2.0
Identities = 8/13 (61%), Positives = 13/13 (100%)
Query: 85 EDVKHMLEEHDKL 97
ED+K+M+EE+D+L
Sbjct: 73 EDLKNMMEEYDRL 85
Score = 28.3 bits (64), Expect = 2.0
Identities = 8/13 (61%), Positives = 13/13 (100%)
Query: 303 EDVKHMLEEHDKL 315
ED+K+M+EE+D+L
Sbjct: 73 EDLKNMMEEYDRL 85
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 29.4 bits (67), Expect = 2.5
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 24/147 (16%)
Query: 177 GFISHDEFSGPKHDELHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYG 236
GFI + F G K + F+ LG GQ I G+++ L M GE++++ + Y
Sbjct: 159 GFIDGEAFEGGKAEN-------FSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDY- 210
Query: 237 DRGAGNVIPGGATLTFEVELLSIGDQVTTTNVFKEIDSDADKQLSREEVS-----EYLKK 291
A + G TF+V + + E+D + K L E + ++K
Sbjct: 211 --HAEEL--AGKEATFKVTVKEV-----KEKELPELDDEFAKSLGEEFETLEELKADIRK 261
Query: 292 QMVAAEGSEGAEDVKHMLEEHDKLVEE 318
+ + +K L DKLVE
Sbjct: 262 NLEREKKERAKNKLKEQLL--DKLVEN 286
>gnl|CDD|214809 smart00762, Cog4, COG4 transport protein. This region is found in
yeast oligomeric golgi complex component 4 which is
involved in ER to Golgi and intra Golgi transport.
Length = 324
Score = 29.2 bits (66), Expect = 2.7
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 85 EDVKHMLEEHDKLVEEIF------------QHEDKDKNGFISHDEFSGPKHDELGLPNVF 132
E+V ++E+H ++E+ + Q E D G I D F DE + +
Sbjct: 89 ENVATIIEQHQPVIEKYYGPDGMLYVITKLQKE-ADLQGGIILDTFM----DERRIDRLI 143
Query: 133 KEIDSDADKQLSREEVSEYLKKQMVAAEGSEVEEI 167
+I+S QL ++ EG + E+
Sbjct: 144 SDINSYNHAQLHAGASNDARASSNGEDEGLDPREL 178
>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding
motility-associated. Members of this protein family are
exclusive to the Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldI is a
FKBP-type peptidyl-prolyl cis-trans isomerase
(pfam00254) linked to a type of rapid surface gliding
motility found in certain Bacteroidetes, such as
Flavobacterium johnsoniae and Cytophaga hutchinsonii.
Knockout of this gene abolishes the gliding phenotype.
Gliding motility appears closely linked to chitin
utilization in the model species Flavobacterium
johnsoniae. This family is only found in Bacteroidetes
containing the suite of genes proposed to confer the
gliding motility phenotype.
Length = 177
Score = 29.0 bits (65), Expect = 2.7
Identities = 19/62 (30%), Positives = 24/62 (38%)
Query: 198 PFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGGATLTFEVELL 257
P T+ + + G GL M GE P AYG G N I + V LL
Sbjct: 114 PQTYKVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLL 173
Query: 258 SI 259
+I
Sbjct: 174 NI 175
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs that
recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 27.6 bits (62), Expect = 2.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 99 EEIFQHEDKDKNGFISHDEFSGPKHDELGLPN-----VFKEIDSDADKQLSREE 147
E+IF+ DK+++G ++ + P + GLP ++ D D D +L ++E
Sbjct: 13 EQIFRSLDKNQDGTVTGAQAK-PILLKSGLPQTLLAKIWNLADIDNDGELDKDE 65
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 28.1 bits (63), Expect = 3.2
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 132 FKEIDSDADKQLSREEVSEYLKKQMVAAEGSEVEEIFQHEDKDKNGFISHDEF 184
F ++D++ D LSR E++ L+ +V E ++ F+ D DK+G IS E+
Sbjct: 59 FNQLDTNHDGYLSRSELAP-LRAPLVPMEHC-IKPFFKSCDADKDGLISLREW 109
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 29.2 bits (66), Expect = 4.2
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 26/157 (16%)
Query: 11 IPPALAYGDRGAGNVIPGGATLTFEVE---LLSIGDQVTTTNVFKEIDSDADKQLSREEV 67
IPP +A GA + +TF+V+ LL++ Q +T V + I LS EE+
Sbjct: 443 IPPMVA----GAARIR-----VTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEI 493
Query: 68 SEYLKKQMVAAEGSEGAEDVK-HMLEEH----DKLVEEIFQHEDKDKNGFISHDEFSGPK 122
LK AE ED+ L E ++++E + D + +S DE +
Sbjct: 494 ERMLKDSFKHAE-----EDMYARALAEQKVEAERILEALQAALAADGD-LLSEDERAAID 547
Query: 123 HDELGLPNVFKEIDSDADKQ--LSREEVS-EYLKKQM 156
L + D+DA K + EE + + ++M
Sbjct: 548 AAMEALQKALQGDDADAIKAAIEALEEATDNFAARRM 584
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.133 0.373
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,863,968
Number of extensions: 1792991
Number of successful extensions: 1899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 124
Length of query: 344
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 246
Effective length of database: 6,590,910
Effective search space: 1621363860
Effective search space used: 1621363860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.5 bits)