BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10593
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor 1a
In Mgc11102 Protein
Length = 111
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%)
Query: 16 SQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPI 75
S E+ VP + IV++ + GNNLH++E G+++ VSMP K+R NIWIK GDF+IV PI
Sbjct: 6 SGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65
Query: 76 EEGNKVKAEIEQILDKKYISFLKQQLKLP 104
EEG KVKAEI +L K ++ L+++ P
Sbjct: 66 EEGEKVKAEISFVLCKDHVRSLQKEGFWP 94
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP 165
EEG KVKAEI +L K ++ L+++ WP
Sbjct: 66 EEGEKVKAEISFVLCKDHVRSLQKEGFWP 94
>pdb|1JT8|A Chain A, Archaeal Initiation Factor-1a, Aif-1a
Length = 102
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILD 90
I Q G + ++ G+ +PG+ +N IW++ GD VIVKP E K +I
Sbjct: 26 IEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85
Query: 91 KKYISFLKQQ 100
K + +LK++
Sbjct: 86 KTQVEWLKRK 95
>pdb|2OQK|A Chain A, Crystal Structure Of Putative Cryptosporidium Parvum
Translation Initiation Factor Eif-1a
Length = 117
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 2 SKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNN 61
S+ KR+ V KE QEY ++ + GN G+K + GK R
Sbjct: 19 SEGDKRELVFKEE-GQEYG---------QVQRXLGNGRLDAYCFDGQKRLCHIRGKXRKK 68
Query: 62 IWIKPGDFVIV 72
+W+ PGD V+V
Sbjct: 69 VWVNPGDIVLV 79
>pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of
3-Phosphoshikimate 1- Carboxyvinyltransferase From
Vibrio Cholerae In Complex With Shikimate-3-Phosphate
(Partially Photolyzed) And Glyphosate
Length = 450
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 77 EGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNK 136
+G ++A I FL L P+ G + + +GE +KPY D+TLH++ +
Sbjct: 178 QGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVT--IKIVGELVSKPYIDITLHIMEQ 235
>pdb|3TI2|A Chain A, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|B Chain B, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|C Chain C, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|D Chain D, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
Length = 228
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 77 EGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNK 136
+G ++A I FL L P+ G + + +GE +KPY D+TLH++ +
Sbjct: 139 QGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVT--IKIVGELVSKPYIDITLHIMEQ 196
>pdb|1WJO|A Chain A, Solution Structure Of The Forth Ch Domain From Human
Plastin 3 T-Isoform
Length = 124
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 37 NNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
NL + + H+ KY VSM + ++ P D V VKP
Sbjct: 63 GNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKP 100
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 100 QLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKE 137
+L+LPP+ ++ HF+ + ++Q+ PY + LL +
Sbjct: 55 ELRLPPLYGDNLDQHFRLLAQKQSLPYLEAANLLLQAQ 92
>pdb|2ZZR|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
From Streptcoccus Agalactiae
Length = 397
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNS 35
+ KA K+ ++ + +EY P NNI K+ N+
Sbjct: 32 IEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNT 66
>pdb|3VXD|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
pdb|3VXD|B Chain B, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
pdb|3VXD|C Chain C, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
pdb|3VXD|D Chain D, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
Length = 398
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNS 35
+ KA K+ ++ + +EY P NNI K+ N+
Sbjct: 33 IEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNT 67
>pdb|3ANI|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D175n From Streptcoccus Agalactiae
pdb|3ANK|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D175n From Streptcoccus Agalactiae Complexed
With Dglca-Galnac6s
Length = 398
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNS 35
+ KA K+ ++ + +EY P NNI K+ N+
Sbjct: 33 IEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNT 67
>pdb|3ANJ|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
From Streptcoccus Agalactiae
Length = 398
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNS 35
+ KA K+ ++ + +EY P NNI K+ N+
Sbjct: 33 IEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNT 67
>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a
Length = 143
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 2 SKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNN 61
K +R + E +E ED ++ + GN + G K + GK R
Sbjct: 8 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 67
Query: 62 IWIKPGDFVIV 72
+WI D ++V
Sbjct: 68 VWINTSDIILV 78
>pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766),
A Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
Methyltransferase (Spou)
pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766):
A Methyltransferase With A Cofactor Bound At A Site
Formed By A Knot
Length = 160
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 13 ELLSQEYRVPEDLNNIVKITQNSGNNLHQIE 43
+++ E +P++ NI+++ N+G LH IE
Sbjct: 3 DIVLYEPEIPQNTGNIIRLCANTGFRLHLIE 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,448,586
Number of Sequences: 62578
Number of extensions: 362843
Number of successful extensions: 1047
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 28
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)