BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10593
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58CY2|EIF1A_BOVIN Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2
SV=1
Length = 166
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+ATKRKHV KE+L E+ VP D IV++ + GNNLH++E G+++ VSMP K+R
Sbjct: 1 MSQATKRKHVVKEVLG-EHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLP 104
NIWIK GDF+IV PIEEG KVKAEI +L K ++ L++ P
Sbjct: 60 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 103
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP--FTEDSAEDKAKSN 178
EEG KVKAEI +L K ++ L++ WP F++ + +D N
Sbjct: 75 EEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRN 118
>sp|Q3THJ3|EIF1A_MOUSE Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=2
SV=2
Length = 170
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+A+KRKHV +E+L E+ VP D IVK+ + GNNLH++E G+++ VSMP K+R
Sbjct: 1 MSQASKRKHVVQEVLG-EHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGE 120
NIWIK GDF+IV PIEEG KVKAEI +L K ++ L+++ P F E+ E
Sbjct: 60 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEA--------FSEVAE 111
Query: 121 QQ 122
+Q
Sbjct: 112 KQ 113
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP--FTE 168
EEG KVKAEI +L K ++ L+++ WP F+E
Sbjct: 75 EEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSE 108
>sp|Q5RKI6|EIF1A_RAT Probable RNA-binding protein EIF1AD OS=Rattus norvegicus GN=Eif1ad
PE=2 SV=1
Length = 167
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+A+KRKHV +E+L E+ VP D IVK+ + GNNLH++E G+++ VSMP K+R
Sbjct: 1 MSQASKRKHVVQEVLG-EHMVPSDQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGE 120
NIWIK GDF+IV PIEEG KVKAEI +L K ++ L+++ P F E+ E
Sbjct: 60 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKNHVRSLQKEGHWP--------EAFSEVAE 111
Query: 121 QQ 122
+Q
Sbjct: 112 KQ 113
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP--FTE 168
EEG KVKAEI +L K ++ L+++ WP F+E
Sbjct: 75 EEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSE 108
>sp|Q4R354|EIF1A_MACFA Probable RNA-binding protein EIF1AD OS=Macaca fascicularis
GN=EIF1AD PE=2 SV=1
Length = 165
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+ATKRKHV KE+L E+ VP D IV++ + GNNLH++E G+++ VSMP K+R
Sbjct: 1 MSQATKRKHVVKEVLG-EHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQ 100
NIWIK GDF+IV PIEEG KVKAEI +L K ++ L+++
Sbjct: 60 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKE 99
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP 165
EEG KVKAEI +L K ++ L+++ WP
Sbjct: 75 EEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
>sp|Q8N9N8|EIF1A_HUMAN Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1
SV=1
Length = 165
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+ATKRKHV KE+L E+ VP D IV++ + GNNLH++E G+++ VSMP K+R
Sbjct: 1 MSQATKRKHVVKEVLG-EHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQ 100
NIWIK GDF+IV PIEEG KVKAEI +L K ++ L+++
Sbjct: 60 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKE 99
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP 165
EEG KVKAEI +L K ++ L+++ WP
Sbjct: 75 EEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
>sp|Q5RD29|EIF1A_PONAB Probable RNA-binding protein EIF1AD OS=Pongo abelii GN=EIF1AD PE=2
SV=1
Length = 166
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+ATKRKHV KE+L E+ VP D IV++ + GNNLH++E G+++ VSMP K+R
Sbjct: 1 MSQATKRKHVVKEVLG-EHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQ 100
NIWIK GDF+IV PIEEG KVKAEI +L K ++ L+++
Sbjct: 60 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKE 99
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP 165
EEG KVKAEI +L K ++ L+++ WP
Sbjct: 75 EEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
>sp|Q6K1L7|EIF1A_CHICK Probable RNA-binding protein EIF1AD OS=Gallus gallus GN=eif1ad PE=2
SV=1
Length = 188
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+ATKRKHV +E+L +E+ VP IV++ + GNNLH++E G ++ SMP +FR+
Sbjct: 1 MSRATKRKHVTREVL-EEHVVPAPQQRIVRVLGSPGNNLHEVETADGSRFLASMPPRFRH 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQ 100
++WIK GDF++V PIEEG KVKAE+ +L + ++ FL++Q
Sbjct: 60 HVWIKRGDFLLVDPIEEGAKVKAEMALVLLRPHVRFLQRQ 99
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWPFTEDSAEDKAKSNCEDSDDEMLNGNLNR 193
EEG KVKAE+ +L + ++ FL++Q WP ++ D+ D D E+ N NR
Sbjct: 75 EEGAKVKAEMALVLLRPHVRFLQRQGLWPTAFAASPDRTPQES-DGDSELFV-NTNR 129
>sp|Q0V9J5|EIF1A_XENTR Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis GN=eif1ad
PE=2 SV=1
Length = 179
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MSKATKRKHV KE+L +Y P + IVK+ + GNNLH++E GE++ SMP KFR
Sbjct: 1 MSKATKRKHVVKEVLG-DYVQPTEHQRIVKVLGSPGNNLHEVETSEGERFLASMPTKFRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLP 104
NIWIK GDF+IV PI EG KVKAEI IL K + L+++ P
Sbjct: 60 NIWIKRGDFLIVDPIAEGEKVKAEIAFILYKDHQRLLQKEGLWP 103
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 138 EGNKVKAEIEQILDKKYISFLKQQNSWP--FTEDSAEDKAKSN 178
EG KVKAEI IL K + L+++ WP FT+D K N
Sbjct: 76 EGEKVKAEIAFILYKDHQRLLQKEGLWPEGFTQDKTGVVTKEN 118
>sp|Q5HZM1|EIF1A_XENLA Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad
PE=2 SV=1
Length = 169
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MSKATKRKHV KE+L +Y P + +IVK+ + GNNLH++E GE++ SMP KFR
Sbjct: 1 MSKATKRKHVVKEVLG-DYVQPTEHQSIVKVLGSPGNNLHEVETAEGERFLASMPTKFRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLP 104
NIWIK GDF+IV PI EG KVKAEI IL K + L+++ P
Sbjct: 60 NIWIKRGDFLIVDPIVEGEKVKAEIAFILYKDHQRLLQKEGLWP 103
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 17/77 (22%)
Query: 138 EGNKVKAEIEQILDKKYISFLKQQNSWP--FTED---------------SAEDKAKSNCE 180
EG KVKAEI IL K + L+++ WP FT+D S E +AK E
Sbjct: 76 EGEKVKAEIAFILYKDHQRLLQKEGLWPEGFTQDKTGLVAKEKESSGIQSTEAQAKPQGE 135
Query: 181 DSDDEMLNGNLNRRNNV 197
DS+ + +G N+V
Sbjct: 136 DSETDDDSGLFVNTNHV 152
>sp|Q7SY07|EIF1A_DANRE Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2
SV=1
Length = 172
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MSKATKRKHV KE+L ++Y P + I+++ ++GNNLH+ SGE++ +SMP KFR
Sbjct: 1 MSKATKRKHVVKEVL-EDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQ 99
NIWIK GDFVIV PI+EG KVK EI IL + +I L++
Sbjct: 60 NIWIKRGDFVIVDPIKEGGKVKGEISFILYRDHIQHLRK 98
>sp|Q29MZ0|EIF1A_DROPS Probable RNA-binding protein EIF1AD OS=Drosophila pseudoobscura
pseudoobscura GN=GA16587 PE=3 SV=1
Length = 163
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 68/93 (73%), Gaps = 2/93 (2%)
Query: 4 ATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHS--GEKYFVSMPGKFRNN 61
T+RKH+ KE++ +Y +P + IV++ ++ GNNLH++E + E + VSMP K+R N
Sbjct: 8 TTRRKHLIKEMMEDDYELPTEQQQIVRVVRSCGNNLHEVETATPESENFLVSMPNKYRKN 67
Query: 62 IWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYI 94
+W+K GDF++V+PIEEG+KVKAEI +IL ++
Sbjct: 68 MWVKRGDFLLVEPIEEGDKVKAEISKILTNDHV 100
>sp|Q8IQ13|EIF1A_DROME Probable RNA-binding protein EIF1AD OS=Drosophila melanogaster
GN=CG31957 PE=2 SV=1
Length = 159
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
Query: 5 TKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWI 64
++RKH+ KE++ +Y +P + I ++ + GNNLH++E E + VSMP KFR ++W+
Sbjct: 9 SRRKHLMKEMMEDDYALPTETQQIARVISSRGNNLHEVET-VDETFLVSMPNKFRKSMWV 67
Query: 65 KPGDFVIVKPIEEGNKVKAEIEQILDKKYI 94
K GDF++V+PIEEG+KVKAEI +IL ++I
Sbjct: 68 KRGDFLLVEPIEEGDKVKAEICKILTPEHI 97
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 137 EEGNKVKAEIEQILDKKYISFLKQQNSWP--FTEDSAEDKAKS-NCEDSD--DEMLNGNL 191
EEG+KVKAEI +IL ++I + WP FT+ +++A S N +DSD D++L N
Sbjct: 79 EEGDKVKAEICKILTPEHIKEYTKAAIWPDKFTKKPVQEEATSQNKDDSDFEDDLL-PNT 137
Query: 192 NRRNN 196
NR N
Sbjct: 138 NRPVN 142
>sp|Q23646|EIF1A_CAEEL Probable RNA-binding protein EIF1AD OS=Caenorhabditis elegans
GN=ZK856.11 PE=1 SV=1
Length = 175
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 1 MSKATKRKHVQKELLSQEYR-VPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFR 59
MS ATK++++ ++ S+ Y V ED+ I ++ Q+ GNNLH++ + +G+ Y VSMP KFR
Sbjct: 1 MSAATKKRYITNKVGSEFYELVDEDI--IAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFR 58
Query: 60 NNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLP 104
++W++ FV+V+PI EG+KVK EIE ILD+ + ++++ K P
Sbjct: 59 KSVWLRRDQFVVVRPITEGDKVKGEIEYILDQDNVLYIRELGKWP 103
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 27/130 (20%)
Query: 79 NKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGEQQAKPY------------ 126
NKV +E +++D+ I+ ++Q G+ +H E+ +Q Y
Sbjct: 12 NKVGSEFYELVDEDIIAQVRQS-------RGNNLH---EVLDQNGDSYVVSMPTKFRKSV 61
Query: 127 ---RDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWP--FTEDSAEDKAKSNCED 181
RD + + EG+KVK EIE ILD+ + ++++ WP F E++ + ++
Sbjct: 62 WLRRDQFVVVRPITEGDKVKGEIEYILDQDNVLYIRELGKWPTCFEENALKMTREAKRGQ 121
Query: 182 SDDEMLNGNL 191
+ D+M++ ++
Sbjct: 122 TSDKMIDDDM 131
>sp|P0C659|EIF1A_CAEBR Probable RNA-binding protein EIF1AD OS=Caenorhabditis briggsae
GN=CBG09545 PE=3 SV=1
Length = 176
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS ATK++++ ++ S+ Y + E+ + I ++ Q+ GNNLH++ + +G+ Y VSMP KFR
Sbjct: 1 MSAATKKRYITNKVGSEFYELAEE-DIIAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRK 59
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLP 104
+W++ FV+V+PI EG+KVK EIE ILD+ + ++++ K P
Sbjct: 60 AVWLRRDQFVVVRPIAEGDKVKGEIEYILDQDNVLYIRELGKWP 103
>sp|B0R7D8|IF1A_HALS3 Translation initiation factor 1A OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=eIF1A PE=3 SV=1
Length = 95
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 20 RVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
R+PED ++T G N Q+ GE+ +PG+ + IWI+ D V+V+P
Sbjct: 12 RMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEP 66
>sp|Q9HN64|IF1A1_HALSA Translation initiation factor 1A 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=eIF1A1 PE=3
SV=1
Length = 95
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 20 RVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
R+PED ++T G N Q+ GE+ +PG+ + IWI+ D V+V+P
Sbjct: 12 RMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEP 66
>sp|Q8TXZ3|IF1A_METKA Translation initiation factor 1A OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=eIF1A PE=3
SV=1
Length = 111
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 8 KHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPG 67
K + E L ++ R+P++ + + GN+ Q+ G+ +PGK R +WI+ G
Sbjct: 3 KRIDDETL-KKIRLPKEGEIFGVVEKMLGNDRVQVRCVDGKTRVARIPGKMRKRVWIREG 61
Query: 68 DFVIVKPIE 76
D V+VKP E
Sbjct: 62 DVVLVKPWE 70
>sp|Q9Y803|YN98_SCHPO S1-like domain-containing protein C146.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC146.08c PE=1
SV=1
Length = 127
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 28 IVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP---IEEGNKVKAE 84
+ K+ Q G+ L + ++G++ V MP K+RN IW++ FVIV +E+ NK+
Sbjct: 23 VAKVVQLKGSALFMVVENNGQELLVEMPPKYRNKIWVRRNGFVIVDKSEFLEKDNKIDGT 82
Query: 85 I 85
I
Sbjct: 83 I 83
>sp|Q57887|IF1A_METJA Translation initiation factor 1A OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=eIF1A PE=1 SV=1
Length = 102
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILD 90
I Q G + ++ G+ +PG+ +N IW++ GD VIVKP E K +I
Sbjct: 26 IEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85
Query: 91 KKYISFLKQQ 100
K + +LK++
Sbjct: 86 KTQVEWLKRK 95
>sp|A6UUK8|IF1A_META3 Translation initiation factor 1A OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=eIF1A PE=3 SV=1
Length = 105
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 20 RVPEDLNN--IVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEE 77
R P + NN + I Q G + ++ G +PGK + IW++ GD VIV P E
Sbjct: 15 RTPREENNEILGIIEQMLGASRVRVRCMDGHTRMGRIPGKLKRKIWVREGDIVIVVPWEV 74
Query: 78 GNKVKAEIEQILDKKYISFL 97
+ K +I K +S+L
Sbjct: 75 QSDQKCDIIWRYTKGQVSWL 94
>sp|P57676|IF1A_AERPE Translation initiation factor 1A OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=eIF1A PE=3 SV=1
Length = 111
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 23 EDLNNIVKITQNS-GNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKV 81
ED ++ I Q G ++ GE Y +PGK R +W++ GD V+ P +K
Sbjct: 19 EDEGTMLCIVQRVVGAGFLEVLCTDGEVYMARIPGKMRRRVWMREGDVVLFLPWGTADK- 77
Query: 82 KAEI 85
K E+
Sbjct: 78 KGEV 81
>sp|Q6L2G4|IF1A_PICTO Translation initiation factor 1A OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=eif1a PE=3 SV=1
Length = 108
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 24 DLNNIVKITQN--SGNNLHQIENHSGEKYFVSM-----------PGKFRNNIWIKPGDFV 70
D N I IT N SG +E SG + M PGK + +WI+ GD V
Sbjct: 6 DENTIRVITPNKKSGEIYGIVEKMSGASRLIVMCEDGVTRNCRIPGKMKKRMWIREGDLV 65
Query: 71 IVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPI 106
IVKP E ++ K +I K ++L + LP I
Sbjct: 66 IVKPWEFQDE-KGDIIYRYTKTQAAYLSRNHMLPEI 100
>sp|Q18JF4|IF1A2_HALWD Translation initiation factor 1A 2 OS=Haloquadratum walsbyi
(strain DSM 16790) GN=eif1a2 PE=3 SV=1
Length = 94
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 20 RVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
R+P D + +++G N ++ GE +PG+ + WI GD V+V+P
Sbjct: 11 RMPSDDEMFAVVVEHNGGNHVRVRCQDGENRMGRIPGRMKYRTWINEGDVVLVEP 65
>sp|Q18EX1|IF1A1_HALWD Translation initiation factor 1A 1 OS=Haloquadratum walsbyi
(strain DSM 16790) GN=eif1a1 PE=3 SV=1
Length = 96
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 16 SQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
S + R+P+D +T G N + G + +PG+ + IWI+ D V+V+P
Sbjct: 9 SHDLRMPDDDEVFAVVTNMLGANRVTVRCADGNERTARIPGRMQKRIWIREDDVVLVEP 67
>sp|Q27607|DPOG1_DROME DNA polymerase subunit gamma-1, mitochondrial OS=Drosophila
melanogaster GN=tam PE=1 SV=2
Length = 1145
Score = 38.5 bits (88), Expect = 0.054, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 100 QLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKEE 138
QLKLP + +I HF I ++Q +PY +L L L+ E+
Sbjct: 109 QLKLPALRGANIEEHFHNIAKEQVQPYEELLLPLVQCEQ 147
>sp|O27085|IF1A_METTH Translation initiation factor 1A OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=eIF1A PE=3 SV=1
Length = 99
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
MS+ + + V++ + +P + I+ G+ ++ G +PGK +
Sbjct: 1 MSRGHQTQEVRRVRTPRRGEIPGVVEQIM------GHGKLKVRCADGHIRLGRIPGKMKK 54
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEI 85
IWI+ GD V+VKP E ++ KA+I
Sbjct: 55 RIWIREGDVVLVKPWEFQSEEKADI 79
>sp|Q8U0K5|IF1A_PYRFU Translation initiation factor 1A OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=eIF1A PE=3
SV=2
Length = 115
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
+ Q G + G+ +PG+ R +WIK GD VIV+P
Sbjct: 30 VEQALGAGWMDVRCEDGKVRRCRIPGRLRRRVWIKVGDLVIVEP 73
>sp|O59280|IF1A_PYRHO Translation initiation factor 1A OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=eIF1A PE=3 SV=2
Length = 115
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
+ Q G + G+ +PGK R +WI+ GD VIV+P
Sbjct: 30 VEQALGAGWMDVRCEDGKIRRCRIPGKLRRRVWIRVGDLVIVQP 73
>sp|Q9V138|IF1A_PYRAB Translation initiation factor 1A OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=eIF1A PE=3 SV=2
Length = 113
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
+ Q G + G+ +PGK R +WI+ GD VIV+P
Sbjct: 28 VEQALGAGWMDVRCEDGKIRRCRIPGKLRRRVWIRVGDLVIVQP 71
>sp|O29481|IF1A_ARCFU Translation initiation factor 1A OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=eIF1A PE=3 SV=2
Length = 97
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
+T G ++ G + +PGK R IWI+ GD VIV P
Sbjct: 24 VTSMLGAGHIKVRCEDGVERLARIPGKMRKKIWIREGDVVIVVP 67
>sp|Q8TSA3|IF1A1_METAC Translation initiation factor 1A 1 OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=eIF1A1 PE=3 SV=1
Length = 111
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNS--GNNLHQIENHSGEKYFVSMPGKF 58
+ K T R E R P NN + T S G N ++ G +PG
Sbjct: 6 LKKPTSRATPSTEETFTRVRTPRRENNEILATVESLLGANRLRLRCMDGVVRMGRIPGSM 65
Query: 59 RNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQ 100
+ WI+ GD VIV P E N+ KA++ + + +L+++
Sbjct: 66 KKKTWIREGDVVIVVPWEFQNE-KADVIWKYTRPQVDWLERK 106
>sp|Q3IT14|IF1A_NATPD Translation initiation factor 1A OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1
Length = 97
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 20 RVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
R+PE +T G N ++ G + +PG+ + IWI+ D V+V+P
Sbjct: 11 RMPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIREDDVVLVEP 65
>sp|Q5UZM2|IF1A_HALMA Translation initiation factor 1A OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=eif1a PE=3 SV=2
Length = 95
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 20 RVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
R+PE+ + G N ++ G + +PGK + IWI+ D V+V+P
Sbjct: 11 RMPEEDEVFAVVMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIREDDVVLVEP 65
>sp|Q8PVF1|IF1A1_METMA Translation initiation factor 1A 1 OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=eIF1A1 PE=3 SV=2
Length = 111
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNS--GNNLHQIENHSGEKYFVSMPGKF 58
+ K T R E R P NN + T S G N ++ G +PG
Sbjct: 6 LKKPTSRASPSTEETVTRVRTPRRENNEILATVESLLGANRLRLRCMDGVVRMGRIPGSM 65
Query: 59 RNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQ 100
+ WI+ GD VI P E N+ KA++ + + +L+++
Sbjct: 66 KKKAWIREGDVVIAVPWEFQNE-KADVIWKYTRPQVDWLERK 106
>sp|C3N8M9|IF1A_SULIY Translation initiation factor 1A OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1
Length = 108
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 7 RKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKP 66
+K +E S++ PE+ I + + G + + G++ +PGK R +W++
Sbjct: 3 KKDRAQEAPSRDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMRE 62
Query: 67 GDFVIV 72
GD V+V
Sbjct: 63 GDVVLV 68
>sp|C3NMA0|IF1A_SULIN Translation initiation factor 1A OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1
Length = 108
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 7 RKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKP 66
+K +E S++ PE+ I + + G + + G++ +PGK R +W++
Sbjct: 3 KKDRAQEAPSRDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMRE 62
Query: 67 GDFVIV 72
GD V+V
Sbjct: 63 GDVVLV 68
>sp|C3MU29|IF1A_SULIM Translation initiation factor 1A OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1
Length = 108
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 7 RKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKP 66
+K +E S++ PE+ I + + G + + G++ +PGK R +W++
Sbjct: 3 KKDRAQEAPSRDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMRE 62
Query: 67 GDFVIV 72
GD V+V
Sbjct: 63 GDVVLV 68
>sp|C3MK60|IF1A_SULIL Translation initiation factor 1A OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1
Length = 108
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 7 RKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKP 66
+K +E S++ PE+ I + + G + + G++ +PGK R +W++
Sbjct: 3 KKDRAQEAPSRDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMRE 62
Query: 67 GDFVIV 72
GD V+V
Sbjct: 63 GDVVLV 68
>sp|C4KK84|IF1A_SULIK Translation initiation factor 1A OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=eIF1A PE=3 SV=1
Length = 108
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 7 RKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKP 66
+K +E S++ PE+ I + + G + + G++ +PGK R +W++
Sbjct: 3 KKDRAQEAPSRDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMRE 62
Query: 67 GDFVIV 72
GD V+V
Sbjct: 63 GDVVLV 68
>sp|C3N0P1|IF1A_SULIA Translation initiation factor 1A OS=Sulfolobus islandicus (strain
M.16.27) GN=eIF1A PE=3 SV=1
Length = 108
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 7 RKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKP 66
+K +E S++ PE+ I + + G + + G++ +PGK R +W++
Sbjct: 3 KKDRAQEAPSRDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMRE 62
Query: 67 GDFVIV 72
GD V+V
Sbjct: 63 GDVVLV 68
>sp|Q97W62|IF1A_SULSO Translation initiation factor 1A OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=eIF1A PE=3 SV=1
Length = 108
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 7 RKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKP 66
+K +E S++ PE+ I + + G + + G++ +PGK R +W++
Sbjct: 3 KKDRAQEAPSRDVPRPEEGQTICVVKKMLGGDHLIVLCMDGKERLARIPGKIRKKMWMRE 62
Query: 67 GDFVIV 72
GD V+V
Sbjct: 63 GDVVLV 68
>sp|Q2NEP1|IF1A_METST Translation initiation factor 1A OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=eif1a PE=3 SV=1
Length = 111
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEI 85
+ Q G+ ++ + + +PGK + IWI+ GD V+VKP + + KA++
Sbjct: 37 VEQILGHGKLKVRCNDKQIRLCRIPGKMKKRIWIREGDVVLVKPWDFQSDEKADV 91
>sp|A6Q7Q0|AROA_SULNB 3-phosphoshikimate 1-carboxyvinyltransferase OS=Sulfurovum sp.
(strain NBC37-1) GN=aroA PE=3 SV=1
Length = 427
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 96 FLKQQLKLPPIENGDIVHHFQEIGEQQAKPYRDLTLHLLNKEEGNKVKAE 145
FL L P+ GD+ +GE +KPY D+TLH++ K+ G +V+ E
Sbjct: 173 FLTALLMAAPMARGDM--QIDIVGELVSKPYIDITLHIM-KQFGVEVRNE 219
>sp|Q9HP87|IF1A2_HALSA Translation initiation factor 1A 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=eIF1A2 PE=3
SV=2
Length = 94
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 20 RVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74
R+P D + ++ G N ++ G++ +PG+ + WI GD V+ +P
Sbjct: 11 RMPNDDEVFAVVKRHDGGNHVTLQCEDGKERMGRIPGRMKYRTWINEGDVVLAEP 65
>sp|Q6LZM1|IF1A_METMP Translation initiation factor 1A OS=Methanococcus maripaludis
(strain S2 / LL) GN=eif1a PE=3 SV=1
Length = 104
Score = 34.3 bits (77), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNK---------V 81
I Q G + ++ G+ +PGK + IW++ D VIV P E +
Sbjct: 28 IEQMLGASRVRVRCMDGKLRMGRIPGKLKRKIWVREDDVVIVTPWEVQSDEKCDVIWRYT 87
Query: 82 KAEIEQILDKKYISFLK 98
K +++ + K Y+ F++
Sbjct: 88 KGQVDWLNRKGYLDFMR 104
>sp|A6VJQ7|IF1A_METM7 Translation initiation factor 1A OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=eIF1A PE=3 SV=1
Length = 104
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNK---------V 81
I Q G + ++ G+ +PGK + IW++ D VIV P E +
Sbjct: 28 IEQMLGASRVRVRCMDGKLRMGRIPGKLKRKIWVREDDVVIVTPWEVQSDEKCDVIWRYT 87
Query: 82 KAEIEQILDKKYISFLK 98
K +++ + K Y+ F++
Sbjct: 88 KGQVDWLNKKGYLDFMR 104
>sp|A9A6C2|IF1A_METM6 Translation initiation factor 1A OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=eIF1A PE=3 SV=1
Length = 104
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNK---------V 81
I Q G + ++ G+ +PGK + IW++ D VIV P E +
Sbjct: 28 IEQMLGASRVRVRCMDGKLRMGRIPGKLKRKIWVREDDVVIVTPWEVQSDEKCDVIWRYT 87
Query: 82 KAEIEQILDKKYISFLK 98
K +++ + K Y+ F++
Sbjct: 88 KGQVDWLNKKGYLDFMR 104
>sp|A4FYM5|IF1A_METM5 Translation initiation factor 1A OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=eIF1A PE=3 SV=1
Length = 103
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 31 ITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNK---------V 81
I Q G + ++ G+ +PGK + IW++ D VIV P E +
Sbjct: 27 IEQMLGASRVRVRCMDGKLRMGRIPGKLKRKIWVREDDVVIVTPWEVQSDEKCDVIWRYT 86
Query: 82 KAEIEQILDKKYISFLK 98
K +++ + K Y+ F++
Sbjct: 87 KGQVDWLNRKGYLEFMR 103
>sp|Q03590|IF1A_THEAC Translation initiation factor 1A OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=eIF1A PE=3 SV=2
Length = 119
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 54 MPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPI 106
+PG+ R +WI+ D VIVKP E KA++ K S+L + LP +
Sbjct: 63 IPGRMRKRMWIREKDLVIVKPW-EFQPEKADVVYRYTKTQASYLSRNHMLPEV 114
>sp|Q979F7|IF1A_THEVO Translation initiation factor 1A OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=eIF1A PE=3 SV=1
Length = 123
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 54 MPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPI 106
+PG+ R +WI+ D VIVKP E KA++ K S+L + LP +
Sbjct: 67 IPGRMRKRMWIREKDLVIVKPW-EFQPEKADVVYRYTKTQASYLSRNHMLPEV 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,710,010
Number of Sequences: 539616
Number of extensions: 4646114
Number of successful extensions: 16163
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 16005
Number of HSP's gapped (non-prelim): 200
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)