Query psy10593
Match_columns 275
No_of_seqs 185 out of 482
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:20:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dgy_A MGC11102 protein; EIF-1 100.0 6.6E-35 2.3E-39 237.4 9.9 101 13-114 4-104 (111)
2 1d7q_A Translation initiation 100.0 7.4E-33 2.5E-37 234.2 10.8 104 6-111 13-116 (143)
3 1jt8_A EIF-1A, probable transl 100.0 2.3E-31 7.8E-36 213.9 5.0 88 17-104 10-99 (102)
4 2oqk_A Putative translation in 100.0 2.1E-29 7.2E-34 205.7 10.1 102 6-109 14-115 (117)
5 3i4o_A Translation initiation 99.7 8.6E-18 2.9E-22 129.7 7.4 65 25-90 14-79 (79)
6 1ah9_A IF1, initiation factor 99.7 1.8E-17 6E-22 123.8 5.4 65 25-90 6-71 (71)
7 1hr0_W Translation initiation 99.6 1.1E-17 3.8E-22 125.2 -0.6 64 25-89 7-71 (71)
8 2dgy_A MGC11102 protein; EIF-1 98.9 1.1E-09 3.9E-14 88.9 4.4 47 126-172 55-101 (111)
9 1d7q_A Translation initiation 98.4 2E-07 6.8E-12 78.9 5.9 47 126-173 71-117 (143)
10 2oqk_A Putative translation in 98.3 5.3E-07 1.8E-11 73.4 5.6 44 126-170 72-115 (117)
11 1jt8_A EIF-1A, probable transl 98.1 9.2E-07 3.1E-11 70.9 2.2 39 127-165 61-99 (102)
12 1t9h_A YLOQ, probable GTPase E 95.3 0.03 1E-06 51.3 6.9 61 28-92 12-76 (307)
13 2rcn_A Probable GTPase ENGC; Y 95.2 0.063 2.1E-06 50.4 8.7 63 26-92 47-112 (358)
14 2yv5_A YJEQ protein; hydrolase 94.6 0.11 3.9E-06 46.4 8.3 61 24-90 4-67 (302)
15 2wfw_A ARC; ATP-binding protei 89.8 0.47 1.6E-05 40.6 5.4 65 27-97 69-151 (153)
16 2wg5_A General control protein 83.6 4.2 0.00014 32.1 7.5 50 24-74 36-85 (109)
17 2k52_A Uncharacterized protein 83.5 2.7 9.3E-05 30.5 6.0 64 25-90 7-71 (80)
18 3m9b_A Proteasome-associated A 79.2 3.5 0.00012 37.7 6.3 49 27-75 160-225 (251)
19 3h43_A Proteasome-activating n 78.6 5.7 0.00019 30.2 6.4 50 24-74 17-66 (85)
20 3go5_A Multidomain protein wit 73.8 19 0.00065 32.6 9.6 117 24-151 70-205 (285)
21 3d3r_A Hydrogenase assembly ch 67.2 28 0.00095 27.8 8.1 56 28-98 27-86 (103)
22 1ssf_A Transformation related 67.1 8.9 0.0003 32.9 5.5 98 28-163 27-125 (156)
23 2g3r_A Tumor suppressor P53-bi 66.6 17 0.00059 30.0 6.9 46 27-74 22-68 (123)
24 2z1c_A Hydrogenase expression/ 61.0 34 0.0011 25.6 7.1 55 29-97 7-61 (75)
25 2khi_A 30S ribosomal protein S 56.1 23 0.00079 27.3 5.7 67 22-90 28-101 (115)
26 4dov_A ORC1, origin recognitio 53.9 12 0.00041 32.1 4.0 31 61-91 36-66 (163)
27 3mxn_B RECQ-mediated genome in 50.6 22 0.00074 30.3 5.0 46 27-73 63-108 (150)
28 1gut_A Mopii, molybdate bindin 50.0 35 0.0012 23.2 5.3 51 23-73 5-58 (68)
29 4gop_A Putative uncharacterize 48.4 25 0.00085 27.8 4.8 42 27-73 23-64 (114)
30 2ot2_A Hydrogenase isoenzymes 45.5 87 0.003 24.1 7.4 60 28-97 6-67 (90)
31 3u5e_Y L33, YL33, 60S ribosoma 41.9 18 0.00061 29.9 3.1 37 55-92 40-77 (127)
32 3r8s_R 50S ribosomal protein L 41.7 58 0.002 25.6 6.0 17 134-150 51-67 (103)
33 3iz5_Y 60S ribosomal protein L 39.8 24 0.00084 29.9 3.7 37 55-92 39-76 (150)
34 1fr3_A MOP, molybdate/tungstat 39.0 48 0.0016 22.1 4.5 49 24-73 6-57 (67)
35 2fhd_A RAD9 homolog, DNA repai 39.0 69 0.0024 27.3 6.3 55 27-86 24-83 (153)
36 3v2d_Y 50S ribosomal protein L 38.8 24 0.00083 28.2 3.4 34 58-92 1-34 (110)
37 1nnx_A Protein YGIW; structura 38.0 52 0.0018 26.1 5.2 46 27-73 42-87 (109)
38 2k4k_A GSP13, general stress p 37.9 66 0.0023 25.4 5.8 66 22-89 5-76 (130)
39 4a17_S RPL26, 60S ribosomal pr 37.5 23 0.00079 29.5 3.1 37 55-92 39-76 (135)
40 2khj_A 30S ribosomal protein S 35.8 33 0.0011 26.0 3.6 56 20-76 27-88 (109)
41 3j21_U 50S ribosomal protein L 35.6 24 0.00082 28.8 2.9 31 61-92 43-73 (121)
42 4b4t_L 26S protease subunit RP 32.9 57 0.0019 31.2 5.5 50 24-74 101-150 (437)
43 4b4t_J 26S protease regulatory 31.5 81 0.0028 30.0 6.3 51 23-74 67-117 (405)
44 3p8d_A Medulloblastoma antigen 31.0 72 0.0024 23.5 4.6 30 24-53 19-49 (67)
45 2id0_A Exoribonuclease 2; RNAs 29.7 2.7E+02 0.0093 27.7 10.0 60 53-112 109-179 (644)
46 2ja9_A Exosome complex exonucl 29.1 46 0.0016 28.1 3.8 53 21-74 4-62 (175)
47 3kdf_A Replication protein A 1 28.7 86 0.0029 25.0 5.1 59 27-89 27-87 (121)
48 3qii_A PHD finger protein 20; 28.7 80 0.0027 24.4 4.7 27 27-53 38-64 (85)
49 1kl9_A Eukaryotic translation 27.7 2.1E+02 0.0071 24.1 7.6 68 21-90 12-87 (182)
50 2je6_I RRP4, exosome complex R 27.2 98 0.0034 27.4 5.7 57 20-77 70-135 (251)
51 4b4t_I 26S protease regulatory 25.5 91 0.0031 30.2 5.5 50 24-74 102-151 (437)
52 3d0f_A Penicillin-binding 1 tr 24.4 1.5E+02 0.005 22.3 5.5 51 21-74 30-94 (106)
53 2nn6_I 3'-5' exoribonuclease C 23.5 1.5E+02 0.0052 25.4 6.1 55 21-76 78-148 (209)
54 2pi2_E Replication protein A 1 22.9 1.2E+02 0.004 25.0 5.0 59 27-89 48-108 (142)
55 1yez_A MM1357; MAR30, autostru 21.8 89 0.003 21.8 3.6 22 128-149 36-57 (68)
56 1u0l_A Probable GTPase ENGC; p 21.8 1.8E+02 0.0061 25.4 6.3 46 27-73 11-58 (301)
57 3lwc_A Uncharacterized protein 21.5 2E+02 0.0069 21.9 5.9 46 46-92 58-113 (119)
58 2ba0_A Archeal exosome RNA bin 21.4 1.9E+02 0.0064 25.1 6.3 56 20-76 53-115 (229)
59 1vq8_T 50S ribosomal protein L 20.1 1E+02 0.0036 24.9 4.0 31 61-92 40-70 (120)
No 1
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=237.37 Aligned_cols=101 Identities=44% Similarity=0.700 Sum_probs=95.8
Q ss_pred hhhhccCCCCCCCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 13 ELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 13 E~l~~e~~lP~egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
+++ .++++|++||++|+|++++|||+|+|+|+||+++||+|||||||+|||++||+|+|+|+++++++||+|+|||+++
T Consensus 4 ~~l-~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 4 GSS-GEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp CCC-CSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred hhh-ccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 456 8899999999999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred hHHHHHHCCCCCcccccCcccc
Q psy10593 93 YISFLKQQLKLPPIENGDIVHH 114 (275)
Q Consensus 93 qVK~Lrk~G~WPkeF~~~~~~~ 114 (275)
||++|+++|+||++|.+..+..
T Consensus 83 qvk~L~k~g~wP~~F~~~~~~~ 104 (111)
T 2dgy_A 83 HVRSLQKEGFWPEAFSEVAEKH 104 (111)
T ss_dssp HHHHHHHHTCSCHHHHHHHTTC
T ss_pred HHHHHHHcCCCChHHhhccccc
Confidence 9999999999999998766554
No 2
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.98 E-value=7.4e-33 Score=234.24 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=98.5
Q ss_pred cchhhhhhhhhccCCCCCCCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEE
Q psy10593 6 KRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEI 85 (275)
Q Consensus 6 KRKhv~~E~l~~e~~lP~egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeI 85 (275)
++||+.++.. .++++|++||++|+|++++||++|+|+|+||+++||+||||||++|||++||+|+|+|++++ +.||+|
T Consensus 13 r~K~~~~~~~-~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd-~~KG~I 90 (143)
T 1d7q_A 13 RGKNENESEK-RELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQ-DNKADV 90 (143)
T ss_dssp CCCCCSCCCC-CCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSS-SSCCEE
T ss_pred cccccchhhh-hcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccCC-CCeEEE
Confidence 3488888877 89999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EEEeChhhHHHHHHCCCCCcccccCc
Q psy10593 86 EQILDKKYISFLKQQLKLPPIENGDI 111 (275)
Q Consensus 86 V~ry~kdqVK~Lrk~G~WPkeF~~~~ 111 (275)
+|||+++|+++|+++|+||++|....
T Consensus 91 i~r~~~devk~L~k~g~wP~~f~~~~ 116 (143)
T 1d7q_A 91 ILKYNADEARSLKAYGELPEHAKINE 116 (143)
T ss_dssp EEEECTTTHHHHHHHTSSCTTCCCCC
T ss_pred EEEeCHHHHHHHHHcCCCChHHhhCc
Confidence 99999999999999999999997644
No 3
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.97 E-value=2.3e-31 Score=213.89 Aligned_cols=88 Identities=28% Similarity=0.460 Sum_probs=85.0
Q ss_pred ccCCCCC--CCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChhhH
Q psy10593 17 QEYRVPE--DLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYI 94 (275)
Q Consensus 17 ~e~~lP~--egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kdqV 94 (275)
.++++|+ ++|++|+|++++|||+|+|+|+||+++||+||||||++|||++||+|+|++++++++.||+|+|||+++|+
T Consensus 10 ~~~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~de~ 89 (102)
T 1jt8_A 10 IRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQV 89 (102)
T ss_dssp CCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCSHH
T ss_pred eecccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEeCHHHH
Confidence 5778877 99999999999999999999999999999999999999999999999999999876899999999999999
Q ss_pred HHHHHCCCCC
Q psy10593 95 SFLKQQLKLP 104 (275)
Q Consensus 95 K~Lrk~G~WP 104 (275)
++|+++|+||
T Consensus 90 ~~L~k~g~~p 99 (102)
T 1jt8_A 90 EWLKRKGYLD 99 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHcCCCc
Confidence 9999999999
No 4
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=2.1e-29 Score=205.65 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=90.4
Q ss_pred cchhhhhhhhhccCCCCCCCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEE
Q psy10593 6 KRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEI 85 (275)
Q Consensus 6 KRKhv~~E~l~~e~~lP~egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeI 85 (275)
++||+.++.. .+++.|+++|++|+|++++||++|.|+|+||..++|+||||||++|||.+||+|+|++++++ +.+|+|
T Consensus 14 r~k~~~~~~~-~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~-~~kG~I 91 (117)
T 2oqk_A 14 RGKNDSEGDK-RELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQ-DSKGDI 91 (117)
T ss_dssp --------CC-CCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTC-TTEEEE
T ss_pred ccccccchhh-hhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCC-CCeEEE
Confidence 4589988877 89999999999999999999999999999999999999999999999999999999999876 779999
Q ss_pred EEEeChhhHHHHHHCCCCCccccc
Q psy10593 86 EQILDKKYISFLKQQLKLPPIENG 109 (275)
Q Consensus 86 V~ry~kdqVK~Lrk~G~WPkeF~~ 109 (275)
+++|.++|+++|+++|+||++|.-
T Consensus 92 ~~~~~r~~~k~l~~~g~~p~~f~~ 115 (117)
T 2oqk_A 92 ILKYTPDEARALKSKGEIPETTKI 115 (117)
T ss_dssp EEECCHHHHHHHHHTTSSCTTCCC
T ss_pred EEEechHHHHHHHHcCCCCcccCc
Confidence 999999999999999999999964
No 5
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=99.72 E-value=8.6e-18 Score=129.68 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=61.6
Q ss_pred CcEEEEEEEecCCceEEEEeCCCcEEEEEecccccc-eeeeeCCCEEEEeeecCCCCeEEEEEEEeC
Q psy10593 25 LNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQILD 90 (275)
Q Consensus 25 gQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRK-rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~ 90 (275)
-++.|+|++++||+.|.|+|.||++++|+|+||||+ +|||.+||.|+|++|+++ ..||+|+|||.
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd-~~kgrIi~R~~ 79 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYD-LSRGRIVYRYK 79 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTE-EEEEEEEEECC
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccC-CCcEEEEEEcC
Confidence 578999999999999999999999999999999999 699999999999999886 88999999983
No 6
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.69 E-value=1.8e-17 Score=123.77 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=59.7
Q ss_pred CcEEEEEEEecCCceEEEEeCCCcEEEEEecccccce-eeeeCCCEEEEeeecCCCCeEEEEEEEeC
Q psy10593 25 LNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNN-IWIKPGDFVIVKPIEEGNKVKAEIEQILD 90 (275)
Q Consensus 25 gQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKr-IWIKrGD~VLVeP~D~~~kvKGeIV~ry~ 90 (275)
.++.|+|++++||+.|.|+|+||..++|++|||||++ ||+.+||+|+|++++++ +.+|+|+|||.
T Consensus 6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~-~~kg~I~~r~~ 71 (71)
T 1ah9_A 6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYD-LSKGRIVFRSR 71 (71)
T ss_dssp EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSC-TTEEEECSCCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCC-CCEEEEEEEEC
Confidence 4678999999999999999999999999999999987 99999999999988654 56999999984
No 7
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.64 E-value=1.1e-17 Score=125.17 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=59.2
Q ss_pred CcEEEEEEEecCCceEEEEeCCCcEEEEEecccccc-eeeeeCCCEEEEeeecCCCCeEEEEEEEe
Q psy10593 25 LNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQIL 89 (275)
Q Consensus 25 gQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRK-rIWIKrGD~VLVeP~D~~~kvKGeIV~ry 89 (275)
.++.|+|++++||+.|.|+|+||..++|++|||||+ +|||.+||+|+|++++++ +.+|+|+|||
T Consensus 7 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~-~~kg~I~~r~ 71 (71)
T 1hr0_W 7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYD-PTRGRIVYRK 71 (71)
T ss_dssp CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTC-TTCCEECSCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCC-CCEEEEEEeC
Confidence 568999999999999999999999999999999997 799999999999998754 5699999986
No 8
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=88.91 Aligned_cols=47 Identities=34% Similarity=0.373 Sum_probs=43.7
Q ss_pred CCCceEEEeecCCCCeeeEEEEEecChhhHHHHHHhCCCCcccccch
Q psy10593 126 YRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWPFTEDSAE 172 (275)
Q Consensus 126 ~r~~~~~v~pi~Eg~KVkaEI~~IL~kd~IK~lkk~~~WP~~F~~~~ 172 (275)
-||++|+|+|.++++++||+|+++++++|||+|+++|.||++|.+.+
T Consensus 55 ~~GD~VlVe~~~yd~~~kg~Iv~r~~~~qvk~L~k~g~wP~~F~~~~ 101 (111)
T 2dgy_A 55 KRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVA 101 (111)
T ss_dssp CSSCEEEEEECSSCSSCCEEEEEECCHHHHHHHHHHTCSCHHHHHHH
T ss_pred cCCCEEEEEecccCCcceEEEEEEeCHHHHHHHHHcCCCChHHhhcc
Confidence 36999999999999999999999999999999999999999997643
No 9
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.45 E-value=2e-07 Score=78.92 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=41.6
Q ss_pred CCCceEEEeecCCCCeeeEEEEEecChhhHHHHHHhCCCCcccccchh
Q psy10593 126 YRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWPFTEDSAED 173 (275)
Q Consensus 126 ~r~~~~~v~pi~Eg~KVkaEI~~IL~kd~IK~lkk~~~WP~~F~~~~~ 173 (275)
-+|++|+|.|. +.+.+||+|++++.++|+++|+++|.||++|...+.
T Consensus 71 ~~GD~VlVe~~-~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~ 117 (143)
T 1d7q_A 71 NTSDIILVGLR-DYQDNKADVILKYNADEARSLKAYGELPEHAKINET 117 (143)
T ss_dssp CTTCEEEEECS-SSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCC
T ss_pred cCCCEEEEeec-cCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcc
Confidence 36999999997 556899999999999999999999999999977443
No 10
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=98.34 E-value=5.3e-07 Score=73.36 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=39.7
Q ss_pred CCCceEEEeecCCCCeeeEEEEEecChhhHHHHHHhCCCCccccc
Q psy10593 126 YRDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWPFTEDS 170 (275)
Q Consensus 126 ~r~~~~~v~pi~Eg~KVkaEI~~IL~kd~IK~lkk~~~WP~~F~~ 170 (275)
.+||+|+|+|.+.+ .++|.|+++|.++||++|+++|.||++|..
T Consensus 72 ~~GD~V~ve~~~~~-~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~ 115 (117)
T 2oqk_A 72 NPGDIVLVSLRDFQ-DSKGDIILKYTPDEARALKSKGEIPETTKI 115 (117)
T ss_dssp CTTCEEEEEECTTC-TTEEEEEEECCHHHHHHHHHTTSSCTTCCC
T ss_pred CCCCEEEEEEEcCC-CCeEEEEEEechHHHHHHHHcCCCCcccCc
Confidence 37999999988655 579999999999999999999999999964
No 11
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=98.10 E-value=9.2e-07 Score=70.95 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=37.7
Q ss_pred CCceEEEeecCCCCeeeEEEEEecChhhHHHHHHhCCCC
Q psy10593 127 RDLTLHLLNKEEGNKVKAEIEQILDKKYISFLKQQNSWP 165 (275)
Q Consensus 127 r~~~~~v~pi~Eg~KVkaEI~~IL~kd~IK~lkk~~~WP 165 (275)
+|++|+|+|.+.++.+||+|++++.+||+++|+++|.||
T Consensus 61 ~GD~VlVe~~~yd~~~Kg~Iv~r~~~de~~~L~k~g~~p 99 (102)
T 1jt8_A 61 EGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLD 99 (102)
T ss_dssp SCEEEEECCBCCTTSEEEEEEEESSCSHHHHHHHHHHHH
T ss_pred CCCEEEEEeccCCCCceEEEEEEeCHHHHHHHHHcCCCc
Confidence 599999999999988999999999999999999999999
No 12
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.35 E-value=0.03 Score=51.28 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=49.4
Q ss_pred EEEEEEecCCceEEEEeCC---CcEEEEEecccccce-eeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 28 IVKITQNSGNNLHQIENHS---GEKYFVSMPGKFRNN-IWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 28 IgrVv~~lG~nlfeVec~D---G~~rLa~IPGKfRKr-IWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
-|+|++..| +.|.|..++ |....|+++|+||+. +-.-.||.|.+++.+.+ .|.|..++...
T Consensus 12 ~g~vi~~~~-~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~~~---~~~i~~i~~R~ 76 (307)
T 1t9h_A 12 EGKIIKALS-GFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDK---EGYLMEIKERT 76 (307)
T ss_dssp EEEEEEEET-TEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCTTS---CEEEEEECCCS
T ss_pred CeEEEEEEC-CEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcCCC---ceEEEEEcchh
Confidence 478888665 677898877 888999999999974 66779999999976533 79999998765
No 13
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.21 E-value=0.063 Score=50.39 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=50.0
Q ss_pred cEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCC-C--eEEEEEEEeChh
Q psy10593 26 NNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGN-K--VKAEIEQILDKK 92 (275)
Q Consensus 26 Q~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~-k--vKGeIV~ry~kd 92 (275)
.+.|+|++..| +.|.|..++|..+.|+++|+|++ +-.||.|.+++.+.+. . ++|.|+.++...
T Consensus 47 ~~~g~Vi~~~~-~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~ 112 (358)
T 2rcn_A 47 PAEGIVISRFG-MHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKAAAEGVNVKGIVEAVHERT 112 (358)
T ss_dssp CEEEEEEEEET-TEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC-------CCEEEEEECCCS
T ss_pred cceEEEEEEEC-CEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCCccccccccceEeEEeCCc
Confidence 46899999765 57889999999999999999987 8899999999754321 1 239999998876
No 14
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.58 E-value=0.11 Score=46.39 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=47.1
Q ss_pred CCcEEEEEEEecCCceE--EEEeCCCcEEEEEecccccce-eeeeCCCEEEEeeecCCCCeEEEEEEEeC
Q psy10593 24 DLNNIVKITQNSGNNLH--QIENHSGEKYFVSMPGKFRNN-IWIKPGDFVIVKPIEEGNKVKAEIEQILD 90 (275)
Q Consensus 24 egQ~IgrVv~~lG~nlf--eVec~DG~~rLa~IPGKfRKr-IWIKrGD~VLVeP~D~~~kvKGeIV~ry~ 90 (275)
.+-+.|+|++..| +.| .|. ++|..+.|+++|+||+. . .-.||.|.+++++.+ .|-|..+..
T Consensus 4 ~~~~~g~v~~~~~-~~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~~~---~g~I~~i~e 67 (302)
T 2yv5_A 4 KELKRGLVVDREA-QMIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVDPN---TFAIEEVEE 67 (302)
T ss_dssp CCCEEEEEEEEET-TEEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEETT---EEEEEEECC
T ss_pred CCceeEEEEEeeC-CeEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEccCC---eEEEEeeCC
Confidence 3457899999776 556 555 78889999999999974 5 889999999988743 677766643
No 15
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=89.79 E-value=0.47 Score=40.58 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=45.8
Q ss_pred EEEEEEEecCC-ceEEEEeCCCcEEEEEeccccccee-----------------eeeCCCEEEEeeecCCCCeEEEEEEE
Q psy10593 27 NIVKITQNSGN-NLHQIENHSGEKYFVSMPGKFRNNI-----------------WIKPGDFVIVKPIEEGNKVKAEIEQI 88 (275)
Q Consensus 27 ~IgrVv~~lG~-nlfeVec~DG~~rLa~IPGKfRKrI-----------------WIKrGD~VLVeP~D~~~kvKGeIV~r 88 (275)
.++.|.+.++. ++..|....|+++++++.+.++... -++.||-|+|++.- |-..-+
T Consensus 69 ev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~ra------g~A~E~ 142 (153)
T 2wfw_A 69 EISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTKA------GYAFER 142 (153)
T ss_dssp EEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETTT------TEEEEE
T ss_pred CEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCCC------ceEEEE
Confidence 57889999999 8999999999999999999997632 59999999999742 233445
Q ss_pred eChhhHHHH
Q psy10593 89 LDKKYISFL 97 (275)
Q Consensus 89 y~kdqVK~L 97 (275)
+.+.++..|
T Consensus 143 ipk~eVe~L 151 (153)
T 2wfw_A 143 IPKAEVEDL 151 (153)
T ss_dssp ECSCC----
T ss_pred cCccchhhh
Confidence 555555544
No 16
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=83.60 E-value=4.2 Score=32.10 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=43.7
Q ss_pred CCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEee
Q psy10593 24 DLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74 (275)
Q Consensus 24 egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP 74 (275)
....+|.|++.++.+.+.|...+|.+.++.+.+..-+.- +++|+.|.+..
T Consensus 36 ~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~-LkpG~rVaLn~ 85 (109)
T 2wg5_A 36 PPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEE-LKPGARVALNQ 85 (109)
T ss_dssp CCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTT-CCTTCEEEEET
T ss_pred CCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHH-CCCCCEEEECC
Confidence 468999999999999999999999999999998887543 88898888873
No 17
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=83.52 E-value=2.7 Score=30.51 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=45.9
Q ss_pred CcEEEEEEEecCCceEEEEeCCCcEEEEEeccccccee-eeeCCCEEEEeeecCCCCeEEEEEEEeC
Q psy10593 25 LNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNI-WIKPGDFVIVKPIEEGNKVKAEIEQILD 90 (275)
Q Consensus 25 gQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrI-WIKrGD~VLVeP~D~~~kvKGeIV~ry~ 90 (275)
..+.|+|......+.| |++.+|..=|+++..=...++ -++.||.|.|.-...+ ..+|.|...+.
T Consensus 7 ~iv~G~V~~v~~~G~f-V~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd-~~~~~i~lsl~ 71 (80)
T 2k52_A 7 KFYKGVVTRIEKYGAF-INLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVR-PEKREIDFKYI 71 (80)
T ss_dssp CEEEEEEEEEETTEEE-EEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEE-TTTTEEEEEEC
T ss_pred CEEEEEEEEEeCCEEE-EEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEE-CCCCEEEEEEe
Confidence 4578999999888887 899989888888776333333 5899999998855432 33566665554
No 18
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.20 E-value=3.5 Score=37.66 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=42.3
Q ss_pred EEEEEEEec-CCceEEEEeCCCcEEEEEeccccccee----------------eeeCCCEEEEeee
Q psy10593 27 NIVKITQNS-GNNLHQIENHSGEKYFVSMPGKFRNNI----------------WIKPGDFVIVKPI 75 (275)
Q Consensus 27 ~IgrVv~~l-G~nlfeVec~DG~~rLa~IPGKfRKrI----------------WIKrGD~VLVeP~ 75 (275)
.++.|.+.+ ++++..|....|+++++++.+.+...- -+++||-|+|++.
T Consensus 160 ev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~r 225 (251)
T 3m9b_A 160 EISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTK 225 (251)
T ss_dssp EEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTT
T ss_pred cEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCC
Confidence 578888889 777999999999999999999997531 5899999999963
No 19
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=78.58 E-value=5.7 Score=30.21 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=43.6
Q ss_pred CCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEee
Q psy10593 24 DLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74 (275)
Q Consensus 24 egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP 74 (275)
.+..+|.|+++++.+.+.|...+|.+.++.+.+...+. -+++|+-|.+..
T Consensus 17 ~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~-~LkpG~rVaLn~ 66 (85)
T 3h43_A 17 PPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPD-DLAPGKRVCLNQ 66 (85)
T ss_dssp CCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGG-GCCTTCEEEECT
T ss_pred CCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHH-HCCCCCEEEECC
Confidence 46899999999999999999999999999999987643 359999998873
No 20
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=73.79 E-value=19 Score=32.63 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=67.0
Q ss_pred CCcEEEEEEEec-CCceEEEEeCC-CcEEEEEecc-cccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChh-hHHHHHH
Q psy10593 24 DLNNIVKITQNS-GNNLHQIENHS-GEKYFVSMPG-KFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK-YISFLKQ 99 (275)
Q Consensus 24 egQ~IgrVv~~l-G~nlfeVec~D-G~~rLa~IPG-KfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd-qVK~Lrk 99 (275)
..-..++|+... ..+.| |..-- |..-++++.- ...+..|.+.||.|.|-.. .+ + +++|+--+... ..+.|.
T Consensus 70 G~~~~g~V~~v~~~~GaF-VdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l~-iD-~-~~Ri~ls~k~~~~~~~~~- 144 (285)
T 3go5_A 70 DQFGWGRVTEVRKDLGVF-VDTGLPDKEIVVSLDILPELKELWPKKGDQLYIRLE-VD-K-KDRIWGLLAYQEDFQRLA- 144 (285)
T ss_dssp SSCEEEEEEEEETTTEEE-EECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEEE-EC-T-TSCEEEEECCHHHHHHHC-
T ss_pred CCEEEEEEEEEccCceEE-EEECCCCcEEEEEHHHCCcccccccCCCCEEEEEEE-EC-C-CCcEEEEehhhhhcchhh-
Confidence 445789999987 45555 33433 4567777653 2334479999999988853 33 3 56787766433 233331
Q ss_pred CCCCCcccccCcccccccccccccCCCCCceE-EEe--------------ecCCCCeeeEEEEEecC
Q psy10593 100 QLKLPPIENGDIVHHFQEIGEQQAKPYRDLTL-HLL--------------NKEEGNKVKAEIEQILD 151 (275)
Q Consensus 100 ~G~WPkeF~~~~~~~~~e~~~~~~~~~r~~~~-~v~--------------pi~Eg~KVkaEI~~IL~ 151 (275)
.........+.=+.-=-.-.|| |-|+ .++ ++..|++|+|-|..|=-
T Consensus 145 -----~~~~~~~~G~~V~g~V~~i~~~-G~fV~~i~~g~~Glih~SEl~~~l~~Gd~v~~~V~~id~ 205 (285)
T 3go5_A 145 -----RPAYNNMQNQNWPAIVYRLKLS-GTFVYLPENNMLGFIHPSERYAEPRLGQVLDARVIGFRE 205 (285)
T ss_dssp -----CCCCSCCTTCEEEEEEEEEETT-EEEEEETTTTEEEEECGGGCSSCCCTTCEEEEEEEEEET
T ss_pred -----hhhhhCCCCCEEEEEEEEEeCC-cEEEEEeCCCeEEEEEHHHccccCCCCCEEEEEEEEEEC
Confidence 1111111111111111233455 7777 653 47889999999988854
No 21
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=67.18 E-value=28 Score=27.78 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=38.4
Q ss_pred EEEEEEecCC-ceEEEEeCCCcEEEEEe---cccccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChhhHHHHH
Q psy10593 28 IVKITQNSGN-NLHQIENHSGEKYFVSM---PGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLK 98 (275)
Q Consensus 28 IgrVv~~lG~-nlfeVec~DG~~rLa~I---PGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kdqVK~Lr 98 (275)
-+||++..++ +.-.| ...|..|.++| |. =++.||||||- -|-.+.++.++++++..
T Consensus 27 P~kVveI~~~~~~A~V-d~~Gv~reV~l~Lv~e------~~~vGDyVLVH--------vGfAi~kIDeeeA~etl 86 (103)
T 3d3r_A 27 PSQVVAVDNERQSVTV-DTLGVRRDVSSHLMTE------PLAIGDYVLIH--------IGFVMNKIDRNDALQSL 86 (103)
T ss_dssp CEEEEEEETTTTEEEE-EETTEEEEEECTTBSS------CCCTTCEEEEE--------EEEEEEEECHHHHHHHH
T ss_pred CEEEEEEeCCCCEEEE-EcCCEEEEEEEEeecC------CCCCCCEEEEe--------echhhhhCCHHHHHHHH
Confidence 3788888754 45445 44688776654 32 15679999998 46678888888876543
No 22
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=67.07 E-value=8.9 Score=32.86 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=60.7
Q ss_pred EEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChhhHHHHHHCCCCCccc
Q psy10593 28 IVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIE 107 (275)
Q Consensus 28 IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kdqVK~Lrk~G~WPkeF 107 (275)
-|+|.+.+++++|+|...||....+..+ |+|+|.|.... -.|.. +.. ..||-...
T Consensus 27 pG~V~~~~~~~~Y~V~FdDG~~k~v~~~------------divv~~~LP~~----~~V~A-~~~--------ddy~s~gi 81 (156)
T 1ssf_A 27 SGKITRDVGAGKYKLLFDDGYECDVLGK------------DILLCDPIPLD----TEVTA-LSE--------DEYFSAGV 81 (156)
T ss_dssp EEEEEECCTTTEEEEECTTSCEEEEETT------------TEEEECCSCSS----EEEEE-SSC--------TTTCEEEE
T ss_pred ccEEEEeccCCEEEEEEcCCCeeEeecc------------ceEEEeccCCC----cEEEE-ccC--------CccccccE
Confidence 5999999999999999999998876554 78888876543 22222 222 23444433
Q ss_pred ccCcccccccccccccCCCCCceEEEeecCCCCeeeEEE-EEecChhhHHHHHHhCC
Q psy10593 108 NGDIVHHFQEIGEQQAKPYRDLTLHLLNKEEGNKVKAEI-EQILDKKYISFLKQQNS 163 (275)
Q Consensus 108 ~~~~~~~~~e~~~~~~~~~r~~~~~v~pi~Eg~KVkaEI-~~IL~kd~IK~lkk~~~ 163 (275)
... +-.+. +.++.+.-+ +|+.+..-. .=||.++|++.|+++=.
T Consensus 82 I~~---h~~~~---------~e~~Y~Ve~-~G~t~~~~~~dI~LS~eQa~~l~~~~~ 125 (156)
T 1ssf_A 82 VKG---HRKES---------GELYYSIEK-EGQRKWYKRMAVILSLEQGNRLREQYG 125 (156)
T ss_dssp EEE---EEEET---------TEEEEEEEE-TTEEEEECGGGEEEEHHHHHTTTTTTS
T ss_pred EEe---ecCCC---------CcEEEEEEe-CCcEEEEEeeeEEECHHHHHHHHHHhc
Confidence 332 21111 233444445 776553222 23699999999999844
No 23
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=66.64 E-value=17 Score=29.99 Aligned_cols=46 Identities=22% Similarity=-0.021 Sum_probs=31.0
Q ss_pred EEEEEEEecCCceEEEEeCCCcEEEEEecccccc-eeeeeCCCEEEEee
Q psy10593 27 NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN-NIWIKPGDFVIVKP 74 (275)
Q Consensus 27 ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRK-rIWIKrGD~VLVeP 74 (275)
--|+|++-+|+++|+|...||.+..+. +|+=- .-=|-.|--|++..
T Consensus 22 YpG~V~~~~~~~ky~V~FdDg~~~~v~--~k~iiv~d~ip~g~~V~A~t 68 (123)
T 2g3r_A 22 YSGKITRDVGAGKYKLLFDDGYECDVL--GKDILLCDPIPLDTEVTALS 68 (123)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEEE--GGGEECCSSCCTTCEEEEEC
T ss_pred cccEEEEeccCCeEEEEEcCCCeeEee--cceEEEecccCCCcEEEEee
Confidence 458898999999999999999987653 22111 00233466666664
No 24
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=61.04 E-value=34 Score=25.62 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=36.1
Q ss_pred EEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChhhHHHH
Q psy10593 29 VKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFL 97 (275)
Q Consensus 29 grVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kdqVK~L 97 (275)
++|++. +++.-.|.. +|..|.+++.== .- ++.||||||- -|-.+.++.+++.++.
T Consensus 7 ~kVvei-~~~~A~vd~-~Gv~r~V~l~Lv--~~--~~vGD~VLVH--------~GfAi~~ideeeA~et 61 (75)
T 2z1c_A 7 GKVIEV-NGPVAVVDF-GGVKREVRLDLM--PD--TKPGDWVIVH--------TGFAIEKLDEKKAMEI 61 (75)
T ss_dssp EEEEEE-ETTEEEEEE-TTEEEEEECTTS--TT--CCTTCEEEEE--------TTEEEEEECHHHHHHH
T ss_pred EEEEEE-CCCEEEEEc-CCEEEEEEEEEe--CC--CCCCCEEEEe--------cchhhhhCCHHHHHHH
Confidence 678887 556666644 788776654210 01 4789999998 2456778888876554
No 25
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=56.11 E-value=23 Score=27.31 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=46.0
Q ss_pred CCCC-cEEEEEEEecCCceEEEEeCCCcEEEEEeccccc-----c-eeeeeCCCEEEEeeecCCCCeEEEEEEEeC
Q psy10593 22 PEDL-NNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFR-----N-NIWIKPGDFVIVKPIEEGNKVKAEIEQILD 90 (275)
Q Consensus 22 P~eg-Q~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfR-----K-rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~ 90 (275)
|..| .+.|+|+.....+.| |++.+|..-|+++..-.. + .--++.||.|.|...... ..+|.|...+.
T Consensus 28 ~~~G~~~~G~V~~v~~~G~F-V~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd-~~~~rI~lslk 101 (115)
T 2khi_A 28 YPEGTKLTGRVTNLTDYGCF-VEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID-EERRRISLGLK 101 (115)
T ss_dssp SCSSCEEEEEEEEEETTEEE-EECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE-TTTTEEEECCC
T ss_pred CCCCCEEEEEEEEEECCEEE-EEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE-CCCCEEEEEEE
Confidence 3444 578999999888887 999999999988765321 1 135889999999865432 22456655443
No 26
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=53.89 E-value=12 Score=32.11 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=25.1
Q ss_pred eeeeeCCCEEEEeeecCCCCeEEEEEEEeCh
Q psy10593 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDK 91 (275)
Q Consensus 61 rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~k 91 (275)
-+=|+.||+|||+..|.+++--|.|...|..
T Consensus 36 ~~~i~vGd~VLI~~~D~~~PyVAki~~lye~ 66 (163)
T 4dov_A 36 EIHIKVGQFVLIQGEDNKKPYVAKLIELFQN 66 (163)
T ss_dssp EEEEETTCEEEECCSSSSCCEEEEEEEEEEE
T ss_pred CeEEeeCCEEEEeCCcccCChhHHHHHHHhc
Confidence 4569999999999887666788888888764
No 27
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=50.55 E-value=22 Score=30.31 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=36.3
Q ss_pred EEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEe
Q psy10593 27 NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVK 73 (275)
Q Consensus 27 ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVe 73 (275)
+-|.|+.. +++.+.+.+..|.-.+..+..=.+.+=|++.|.||.|-
T Consensus 63 mQG~VV~~-~~g~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~ 108 (150)
T 3mxn_B 63 MQGRVVMA-DRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVM 108 (150)
T ss_dssp EEEEEEEE-ETTEEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEE
T ss_pred EEeEEEEe-CCCeEEEECCCceEEEeeccccCCCCcccCCCCEEEEE
Confidence 56888986 88889999888876655555555667899999999987
No 28
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=49.98 E-value=35 Score=23.18 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=36.4
Q ss_pred CCCcEEEEEEEe-cCCceEEE--EeCCCcEEEEEecccccceeeeeCCCEEEEe
Q psy10593 23 EDLNNIVKITQN-SGNNLHQI--ENHSGEKYFVSMPGKFRNNIWIKPGDFVIVK 73 (275)
Q Consensus 23 ~egQ~IgrVv~~-lG~nlfeV--ec~DG~~rLa~IPGKfRKrIWIKrGD~VLVe 73 (275)
..++.-|+|.+. .|+...+| .+.+|....+.|+..--...=+.+|+-|.+.
T Consensus 5 ~rN~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ 58 (68)
T 1gut_A 5 ARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAV 58 (68)
T ss_dssp CSCEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEE
T ss_pred cceEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEE
Confidence 347777888775 23444444 4557888889998766666778999999887
No 29
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=48.36 E-value=25 Score=27.85 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=31.4
Q ss_pred EEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEe
Q psy10593 27 NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVK 73 (275)
Q Consensus 27 ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVe 73 (275)
++|+|.+..| +.+.+.|+||....+.++.-.. ...|.+|-|-
T Consensus 23 ivGkV~~~~g-~~~~l~s~d~~~Vtv~l~~~~~----~~~~~~vEVi 64 (114)
T 4gop_A 23 IVGKVHKVTG-NTLLMQTSDLGNVEIAMTPDSD----VSSSTFVEVT 64 (114)
T ss_dssp EEEEEEEEET-TEEEEECTTSCEEEEECCSSCC----GGGCSEEEEE
T ss_pred EEEEEeeeCC-CEEEEEeCCCCEEEEEeCCCCC----cccCcEEEEE
Confidence 6899999998 8999999999999888874322 2235555554
No 30
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=45.52 E-value=87 Score=24.15 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=37.2
Q ss_pred EEEEEEecCCceEEEEeCCCcEEEEEeccc--ccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChhhHHHH
Q psy10593 28 IVKITQNSGNNLHQIENHSGEKYFVSMPGK--FRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFL 97 (275)
Q Consensus 28 IgrVv~~lG~nlfeVec~DG~~rLa~IPGK--fRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kdqVK~L 97 (275)
-++|++..+++ -.| ...|..|-++|-== --..==++.||||||- -|-.+.++.+++.+..
T Consensus 6 P~kVvei~~~~-A~V-d~~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH--------~GfAi~~ideeeA~et 67 (90)
T 2ot2_A 6 PGQIRTIDGNQ-AKV-DVCGIQRDVDLTLVGSCDENGQPRVGQWVLVH--------VGFAMSVINEAEARDT 67 (90)
T ss_dssp EEEEEEECSSE-EEE-ECSSSEEEEECTTTCSBCTTSCBCTTCEEEEE--------TTEEEEEECHHHHHHH
T ss_pred ceEEEEEcCCc-EEE-EcCCeEEEEEEeeeeccCCCCCCCCCCEEEEe--------cChhhhhCCHHHHHHH
Confidence 47888887764 333 44688887765410 0000015689999998 2456778888877654
No 31
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=41.86 E-value=18 Score=29.88 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=27.5
Q ss_pred cccccc-eeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 55 PGKFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 55 PGKfRK-rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
+.|+.. .+-|+.||-|.|-.-..-++ .|.|+.+|.++
T Consensus 40 r~ky~vrs~~IkkgD~V~Vi~GkdKGk-~GkV~~V~~kk 77 (127)
T 3u5e_Y 40 RAQYGIKALPIRRDDEVLVVRGSKKGQ-EGKISSVYRLK 77 (127)
T ss_dssp HHHHTCCEEECCTTCEEEECSSTTTTC-EEEEEEEEGGG
T ss_pred HHHhCcCcccccCCCEEEEeecCCCCc-cceEEEEECCC
Confidence 344443 39999999999986655434 59999999876
No 32
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=41.70 E-value=58 Score=25.64 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=12.4
Q ss_pred eecCCCCeeeEEEEEec
Q psy10593 134 LNKEEGNKVKAEIEQIL 150 (275)
Q Consensus 134 ~pi~Eg~KVkaEI~~IL 150 (275)
.|.-+|.+|+|+|+.-.
T Consensus 51 ~P~v~~a~V~a~V~~~~ 67 (103)
T 3r8s_R 51 VPFVDGGVIKAEVVAHG 67 (103)
T ss_dssp SSSCTTCEEEEEEEEEE
T ss_pred CcccCCcEEEEEEEecc
Confidence 46777888888887543
No 33
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=39.78 E-value=24 Score=29.88 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=27.5
Q ss_pred cccccc-eeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 55 PGKFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 55 PGKfRK-rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
+.|+.. .+-|+.||-|.|-.-..-++ .|.|+.+|.+.
T Consensus 39 R~ky~vRs~~IkKGD~V~Vi~GkdKGk-~GkVl~V~~kk 76 (150)
T 3iz5_Y 39 RHKYNVRSIPIRKDDEVQVVRGSYKGR-EGKVVQVYRRR 76 (150)
T ss_dssp HTTTTCSEEECCSSSEEEECSSTTTTC-EEEEEEEETTT
T ss_pred HHHhCCcccccCCCCEEEEeecCCCCc-cceEEEEEcCC
Confidence 444433 48999999999986554434 69999999875
No 34
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=39.00 E-value=48 Score=22.07 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCcEEEEEEEe-cCCceEEEEe--CCCcEEEEEecccccceeeeeCCCEEEEe
Q psy10593 24 DLNNIVKITQN-SGNNLHQIEN--HSGEKYFVSMPGKFRNNIWIKPGDFVIVK 73 (275)
Q Consensus 24 egQ~IgrVv~~-lG~nlfeVec--~DG~~rLa~IPGKfRKrIWIKrGD~VLVe 73 (275)
.++.-|+|... .|+...+|.+ .+| ...+.|+..--...=+++|+-|.+.
T Consensus 6 ~N~l~g~V~~i~~~g~~~~v~l~~~~~-~l~a~it~~s~~~l~L~~G~~V~~~ 57 (67)
T 1fr3_A 6 RNKLEATVKEIVKGTVMAKIVMDYKGT-ELVAAITIDSVADLDLVPGDKVTAL 57 (67)
T ss_dssp CEEEEEEEEEEEECSSEEEEEEEETTE-EEEEEEEHHHHHHHTCCTTCEEEEE
T ss_pred ceEEEEEEEEEEeCCceEEEEEEeCCC-EEEEEeCHHHHHhCCCCCCCEEEEE
Confidence 46677777765 3444455554 444 7778888766566778999998887
No 35
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=38.96 E-value=69 Score=27.30 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=41.5
Q ss_pred EEEEEEEec-----CCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeeecCCCCeEEEEE
Q psy10593 27 NIVKITQNS-----GNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPIEEGNKVKAEIE 86 (275)
Q Consensus 27 ~IgrVv~~l-----G~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~D~~~kvKGeIV 86 (275)
-=|.++... ++.+|.|...|+..- .+...--|++=++.||.|-|+ +.. |+.--|+
T Consensus 24 YPATcvg~~~~~~~~~~~y~VrFdDs~~~--~V~~~~vk~LeLRiGD~VKVd--~vp-K~~hiVv 83 (153)
T 2fhd_A 24 YPATLVAPVHSAVTSSIMYKVQFDDATMS--TVNSNQIKRFFLKKGDVVQST--RLG-KIKHTVV 83 (153)
T ss_dssp EEEEEEEEECCSSCCBCEEEEEETTSCEE--EEETTSEEESCCCTTCEEEET--TST-TCCEEEE
T ss_pred cceEEEccCCCcccCCeEEEEEEcCCCCC--ccChhhceeeeeecCCEEEEC--CCC-CccEEEE
Confidence 345555554 789999999999777 777777788999999999999 443 5555444
No 36
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=38.82 E-value=24 Score=28.24 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=25.4
Q ss_pred ccceeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 58 FRNNIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 58 fRKrIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
|+.++-|+.||.|.|-.-..- ...|.|+.++.+.
T Consensus 1 ~~~k~~IkkGD~V~Vi~GkdK-Gk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 1 MRVKMHVKKGDTVLVASGKYK-GRVGKVKEVLPKK 34 (110)
T ss_dssp CCCCCSCCTTSEEEECSSTTT-TCEEEEEEEEGGG
T ss_pred CCcccccCCCCEEEEeEcCCC-CeEeEEEEEECCC
Confidence 445677999999999854432 2469999999875
No 37
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=38.00 E-value=52 Score=26.13 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=40.5
Q ss_pred EEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEe
Q psy10593 27 NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVK 73 (275)
Q Consensus 27 ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVe 73 (275)
+-|.|++.+|++.|.-....| +..+.|+.+.-.-.=|.++|.|-+.
T Consensus 42 L~G~Iv~~~~~d~Y~F~D~TG-~I~VeId~~~w~g~~v~p~~~Vri~ 87 (109)
T 1nnx_A 42 LRGNIVERISDDLYVFKDASG-TINVDIDHKRWNGVTVTPKDTVEIQ 87 (109)
T ss_dssp EEEEEEEEEETTEEEEEETTE-EEEEECCGGGSTTCCCCTTSCEEEE
T ss_pred EEEEEEEEeCCCeEEEECCCc-cEEEEEChhhcCCcccCCCCEEEEE
Confidence 569999999999999999999 6889999887666778999999887
No 38
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=37.91 E-value=66 Score=25.39 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCCCc-EEEEEEEecCCceEEEEeCCCcEEEEEecccccce-----eeeeCCCEEEEeeecCCCCeEEEEEEEe
Q psy10593 22 PEDLN-NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNN-----IWIKPGDFVIVKPIEEGNKVKAEIEQIL 89 (275)
Q Consensus 22 P~egQ-~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKr-----IWIKrGD~VLVeP~D~~~kvKGeIV~ry 89 (275)
+..|+ +.|+|+.....+.| |.+.+|.+=|+++..=...+ --++.||.|.|.....+ ..+|.|..-+
T Consensus 5 ~~vG~iv~G~V~~i~~~G~F-V~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd-~~~~kI~LSl 76 (130)
T 2k4k_A 5 FEVGSVYTGKVTGLQAYGAF-VALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVD-EEKGKISLSI 76 (130)
T ss_dssp CCTTCEEEEEEEEEETTEEE-EEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEE-TTTTEEEEES
T ss_pred CCCCCEEEEEEEEEeCCeEE-EEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEe-CCCCEEEEEE
Confidence 34455 58999998877755 88889988888876432111 35889999998865432 2355666544
No 39
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=37.50 E-value=23 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=27.4
Q ss_pred cccccc-eeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 55 PGKFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 55 PGKfRK-rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
+.++.. .+-|+.||.|.|-.-..-++ .|.|+.+|.++
T Consensus 39 r~ky~vRs~~IkkgD~V~Vi~GkdKGk-~GkV~~V~~kk 76 (135)
T 4a17_S 39 RSKYNVRSMPVRKDDEVLIVRGKFKGN-KGKVTQVYRKK 76 (135)
T ss_dssp HHHHTCSEEECCTTCEEEECSSTTTTC-EEEEEEEETTT
T ss_pred HHHhCCCcccccCCCEEEEeecCCCCc-eeeEEEEEcCC
Confidence 344443 38999999999986655434 59999999875
No 40
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=35.84 E-value=33 Score=26.04 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=36.9
Q ss_pred CCCCCCc-EEEEEEEecCCceEEEEeCCCcEEEEEecccccc-----eeeeeCCCEEEEeeec
Q psy10593 20 RVPEDLN-NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN-----NIWIKPGDFVIVKPIE 76 (275)
Q Consensus 20 ~lP~egQ-~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRK-----rIWIKrGD~VLVeP~D 76 (275)
..+..|+ +.|+|+.....+.| |++.+|..=++++..=... .--++.||.|.|.-..
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~f-V~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~ 88 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGAT-VELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTG 88 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEE-EECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEEECCeEE-EEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEE
Confidence 3455565 67999998877765 8888887666655431111 1248889999888544
No 41
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.64 E-value=24 Score=28.76 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=24.2
Q ss_pred eeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 61 rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
.+-|+.||.|.|-.-.+- ...|.|+.++.+.
T Consensus 43 ~~~IkkGD~V~Vi~GkdK-Gk~GkV~~V~~k~ 73 (121)
T 3j21_U 43 NLPVRVGDKVRIMRGDYK-GHEGKVVEVDLKR 73 (121)
T ss_dssp EEECCSSSEEEECSSSCS-SEEEEEEEEETTT
T ss_pred ccccccCCEEEEeecCCC-CcEeEEEEEEecC
Confidence 488999999999854433 3469999999765
No 42
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.90 E-value=57 Score=31.22 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEee
Q psy10593 24 DLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74 (275)
Q Consensus 24 egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP 74 (275)
-++++|.|++.++.+.+.|....|..+++.+.+.+-.. -+++|+.|.+..
T Consensus 101 ~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~-~l~~g~~v~~~~ 150 (437)
T 4b4t_L 101 IGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRS-KLKKGVRVTLDI 150 (437)
T ss_dssp CCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTT-SCCTTCEEEECS
T ss_pred CCceeeeheeeecCCcEEEEECCCCEEEEecccccCHh-hcCCCceeeEcc
Confidence 47899999999999999999999999999998877543 468888888774
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.47 E-value=81 Score=30.04 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=43.1
Q ss_pred CCCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEee
Q psy10593 23 EDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74 (275)
Q Consensus 23 ~egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP 74 (275)
+.++.+|.|++.++.+.+-|....|..+++.+...+... =+++|+.|.+..
T Consensus 67 ~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~-~l~~~~~v~l~~ 117 (405)
T 4b4t_J 67 EPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVK-DLKASQRVCLRS 117 (405)
T ss_dssp CCCEEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTT-TCCSSCEEEEET
T ss_pred CCCceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHh-hCCCcceeeeec
Confidence 357899999999999999999999999999988776543 368898888863
No 44
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=30.99 E-value=72 Score=23.46 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=24.8
Q ss_pred CCc-EEEEEEEecCCceEEEEeCCCcEEEEE
Q psy10593 24 DLN-NIVKITQNSGNNLHQIENHSGEKYFVS 53 (275)
Q Consensus 24 egQ-~IgrVv~~lG~nlfeVec~DG~~rLa~ 53 (275)
++. --|+|++..|++.|.|..-||.+..+.
T Consensus 19 D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk 49 (67)
T 3p8d_A 19 DCRFYPAKVTAVNKDGTYTVKFYDGVVQTVK 49 (67)
T ss_dssp TSCEEEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred CCCEeeEEEEEECCCCeEEEEEeCCceEEEe
Confidence 444 468999999999999999998877654
No 45
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=29.74 E-value=2.7e+02 Score=27.69 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred Eeccccccee--eeeCCCEEEEee--ecCC-CCe-EEEEEEEeCh-----hhHHHHHHCCCCCcccccCcc
Q psy10593 53 SMPGKFRNNI--WIKPGDFVIVKP--IEEG-NKV-KAEIEQILDK-----KYISFLKQQLKLPPIENGDIV 112 (275)
Q Consensus 53 ~IPGKfRKrI--WIKrGD~VLVeP--~D~~-~kv-KGeIV~ry~k-----dqVK~Lrk~G~WPkeF~~~~~ 112 (275)
.||.+-.+.. -.+.||.|+|+. |+.. ..- .|.|+.++.. -++..+..+.-+|.+|.++..
T Consensus 109 ~i~~~~~~~~~~~~~~g~~v~v~i~~~p~~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l~~~fp~~~~ 179 (644)
T 2id0_A 109 AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVA 179 (644)
T ss_dssp CEECCBCSSCCCCCCSSCEEEEEEEECGGGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTCCCSCCCCCC
T ss_pred cccccccccccccCCCCCEEEEEEecCcCCCCCCceEEEEEEeCCCCCccchHHHHHHHcCCCCCCChHHh
Confidence 5665555443 337999999983 4432 344 8999999954 355666666568888866543
No 46
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=29.09 E-value=46 Score=28.13 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=33.3
Q ss_pred CCCCC-cEEEEEEEecCCceEEEEeCC-CcEEE---EEeccccc-ceeeeeCCCEEEEee
Q psy10593 21 VPEDL-NNIVKITQNSGNNLHQIENHS-GEKYF---VSMPGKFR-NNIWIKPGDFVIVKP 74 (275)
Q Consensus 21 lP~eg-Q~IgrVv~~lG~nlfeVec~D-G~~rL---a~IPGKfR-KrIWIKrGD~VLVeP 74 (275)
.|..| -++|+|+...+ ..+.|.... -..-+ -.+||.-+ .+=.++.||+|.+..
T Consensus 4 ~P~~gDvViG~V~~v~~-~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV 62 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFS-DSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARV 62 (175)
T ss_dssp CCCTTCEEEEEEEEECS-SEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEE
T ss_pred cCCCcCEEEEEEEEEEC-cEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEE
Confidence 45554 58999999654 778888875 22222 23343222 235699999999763
No 47
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=28.74 E-value=86 Score=25.02 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=37.8
Q ss_pred EEEEEEEecC-CceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEeee-cCCCCeEEEEEEEe
Q psy10593 27 NIVKITQNSG-NNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKPI-EEGNKVKAEIEQIL 89 (275)
Q Consensus 27 ~IgrVv~~lG-~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP~-D~~~kvKGeIV~ry 89 (275)
++|+|.+..+ +..+.+.|.||.+..+.++.-.-- .+ +.+|-|--. ..+..+++.-.--+
T Consensus 27 ivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~~--~l--~~~vEViG~V~~~~tI~~~~~~~f 87 (121)
T 3kdf_A 27 FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDE--EI--SGIVEVVGRVTAKATILCTSYVQF 87 (121)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSS--CC--CSEEEEEEEECTTSCEEEEEEEEC
T ss_pred EEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCc--cc--CcEEEEEEEECCCCeEEEEEEEec
Confidence 6888888874 669999999999999999853322 22 446665521 22234666554333
No 48
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=28.68 E-value=80 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=23.1
Q ss_pred EEEEEEEecCCceEEEEeCCCcEEEEE
Q psy10593 27 NIVKITQNSGNNLHQIENHSGEKYFVS 53 (275)
Q Consensus 27 ~IgrVv~~lG~nlfeVec~DG~~rLa~ 53 (275)
--|+|++..|++.|.|..-||.+..+.
T Consensus 38 YPAkI~sV~~~~~YtV~F~DG~~etvk 64 (85)
T 3qii_A 38 YPAKVTAVNKDGTYTVKFYDGVVQTVK 64 (85)
T ss_dssp EEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred eeEEEEEECCCCeEEEEEeCCCeEEec
Confidence 458999999999999999998877653
No 49
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=27.70 E-value=2.1e+02 Score=24.12 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCCCCc-EEEEEEEecCCceEEEEe--CCCcEEEEEecc----cccc-eeeeeCCCEEEEeeecCCCCeEEEEEEEeC
Q psy10593 21 VPEDLN-NIVKITQNSGNNLHQIEN--HSGEKYFVSMPG----KFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQILD 90 (275)
Q Consensus 21 lP~egQ-~IgrVv~~lG~nlfeVec--~DG~~rLa~IPG----KfRK-rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~ 90 (275)
.|..|+ +.|+|+.....+.| |.+ .+|..=|+|+.. +.+. .=.++.||.|.|...+.+ +.+|.|..-+.
T Consensus 12 ~p~~G~iv~G~V~~I~~fGaF-V~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD-~~~~rI~LSlk 87 (182)
T 1kl9_A 12 FPEVEDVVMVNVRSIAEMGAY-VSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVD-KEKGYIDLSKR 87 (182)
T ss_dssp SCCTTCEEEEEEEEECSSEEE-EEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEE-TTTTEEEEEST
T ss_pred CCCCCCEEEEEEEEEeccEEE-EEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEE-CCCCEEEEEEe
Confidence 355565 78999998887776 777 578888888764 2222 135889999999865542 34666766554
No 50
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=27.23 E-value=98 Score=27.40 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=37.7
Q ss_pred CCCCCCc-EEEEEEEecCCceEEEEeCCCcEEEEEeccccccee--------eeeCCCEEEEeeecC
Q psy10593 20 RVPEDLN-NIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNI--------WIKPGDFVIVKPIEE 77 (275)
Q Consensus 20 ~lP~egQ-~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrI--------WIKrGD~VLVeP~D~ 77 (275)
..|..|+ ++|+|+..... .+.|.+.++..=+.++..=.-+++ .++.||.|.+.-...
T Consensus 70 y~p~~GDiV~G~V~~v~~~-ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v 135 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIY-GWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENF 135 (251)
T ss_dssp CCCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCc-eEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEE
Confidence 4667665 78999997654 677888766655555432111222 789999999885543
No 51
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.49 E-value=91 Score=30.17 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=42.6
Q ss_pred CCcEEEEEEEecCCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEee
Q psy10593 24 DLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP 74 (275)
Q Consensus 24 egQ~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP 74 (275)
...++|.|++.++.+..-|..+.|.+.++.+.+.+-+. -+++|+.|.+..
T Consensus 102 ~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~-~l~~~~~v~l~~ 151 (437)
T 4b4t_I 102 NPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKE-LLEPGCSVLLHH 151 (437)
T ss_dssp SSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGG-GCCTTCEEEECT
T ss_pred CCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHh-HccCCcEEEEec
Confidence 46799999999999999999999999999998777543 468888888873
No 52
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=24.40 E-value=1.5e+02 Score=22.34 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=31.7
Q ss_pred CCCCCc-EEEEEEEecCCceEEEEeCCCcEEEEEeccc-cc------------ceeeeeCCCEEEEee
Q psy10593 21 VPEDLN-NIVKITQNSGNNLHQIENHSGEKYFVSMPGK-FR------------NNIWIKPGDFVIVKP 74 (275)
Q Consensus 21 lP~egQ-~IgrVv~~lG~nlfeVec~DG~~rLa~IPGK-fR------------KrIWIKrGD~VLVeP 74 (275)
.|..+. ..|.|++. ..+..+|.+.+|.+.. ||.. |+ -.--+++||+|.|..
T Consensus 30 ~~~~~~~~~AvV~~v-~~~~~~v~~~~g~~~~--l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 30 IGNSDDILAAVVLSA-TPGAVEAFRKNGETIR--ITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp SCTTTTCEEEEEEEE-ETTEEEEEETTSCEEE--ECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEEE
T ss_pred cCccCCeEEEEEEEe-CCCeEEEEEcCCCeEE--EcHHHChhhhhcccccccchhccCCCCCEEEEEE
Confidence 344454 55777764 5667899999986654 5542 11 112267788888874
No 53
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=23.49 E-value=1.5e+02 Score=25.37 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=34.8
Q ss_pred CCCCCc-EEEEEEEecCCceEEEEeC-----------CCcEEEEEecccccce----eeeeCCCEEEEeeec
Q psy10593 21 VPEDLN-NIVKITQNSGNNLHQIENH-----------SGEKYFVSMPGKFRNN----IWIKPGDFVIVKPIE 76 (275)
Q Consensus 21 lP~egQ-~IgrVv~~lG~nlfeVec~-----------DG~~rLa~IPGKfRKr----IWIKrGD~VLVeP~D 76 (275)
.|..|+ ++|+|+.....+ ..|.+. +|..+.-.+......+ =.++.||.|.+.-..
T Consensus 78 ~p~vGDvV~G~V~~v~~~~-a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVis 148 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRF-AKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVIS 148 (209)
T ss_dssp CCCTTCEEEEEEEEECSSE-EEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEECce-EEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEE
Confidence 566665 789999976554 556542 4555555555443332 238999999988544
No 54
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=22.94 E-value=1.2e+02 Score=25.03 Aligned_cols=59 Identities=5% Similarity=0.016 Sum_probs=38.5
Q ss_pred EEEEEEEec-CCceEEEEeCCCcEEEEEecccccceeeeeCCCEEEEee-ecCCCCeEEEEEEEe
Q psy10593 27 NIVKITQNS-GNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIVKP-IEEGNKVKAEIEQIL 89 (275)
Q Consensus 27 ~IgrVv~~l-G~nlfeVec~DG~~rLa~IPGKfRKrIWIKrGD~VLVeP-~D~~~kvKGeIV~ry 89 (275)
++|+|++.- .++.+.+.|.||.+..+.++.-+ +--.+.+|-|-- -+.+..+++...--+
T Consensus 48 iVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL----~~~~~~~VEViG~V~~~~tI~~~~~~~f 108 (142)
T 2pi2_E 48 FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPL----DEEISGIVEVVGRVTAKATILCTSYVQF 108 (142)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSSCC----SSCCCSEEEEEEEECTTSCEEEEEEEEC
T ss_pred EEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCC----CccCCCEEEEEEEECCCCcEEEEEEEec
Confidence 678888762 55788999999999999987432 333477777662 222335666554333
No 55
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=21.80 E-value=89 Score=21.84 Aligned_cols=22 Identities=14% Similarity=0.484 Sum_probs=19.3
Q ss_pred CceEEEeecCCCCeeeEEEEEe
Q psy10593 128 DLTLHLLNKEEGNKVKAEIEQI 149 (275)
Q Consensus 128 ~~~~~v~pi~Eg~KVkaEI~~I 149 (275)
|..++|..--+|++|++.|..+
T Consensus 36 g~~vfV~~alPGE~V~v~i~k~ 57 (68)
T 1yez_A 36 GFVIFVPGTKVGDEVRIKVERV 57 (68)
T ss_dssp TEEEEEESCCTTCEEEEEEEEE
T ss_pred CEEEECcCCCCCCEEEEEEEEe
Confidence 6678999999999999999874
No 56
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=21.77 E-value=1.8e+02 Score=25.38 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=35.4
Q ss_pred EEEEEEEecCCceEEEEeCC-CcEEEEEeccccc-ceeeeeCCCEEEEe
Q psy10593 27 NIVKITQNSGNNLHQIENHS-GEKYFVSMPGKFR-NNIWIKPGDFVIVK 73 (275)
Q Consensus 27 ~IgrVv~~lG~nlfeVec~D-G~~rLa~IPGKfR-KrIWIKrGD~VLVe 73 (275)
+.|+|++..| +.|.|.+.+ |....+.+.++|+ ...---.||.|.+.
T Consensus 11 ~~g~v~~~~~-~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~ 58 (301)
T 1u0l_A 11 RRGIVVSFHS-NMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYT 58 (301)
T ss_dssp EEEEEEEEET-TEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEE
T ss_pred eeEEEEEeeC-CEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEE
Confidence 3799998665 677888776 8888899999998 54444568888766
No 57
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=21.51 E-value=2e+02 Score=21.87 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCcEEEEEecccccc-----eeeeeCCCEEEEee-----ecCCCCeEEEEEEEeChh
Q psy10593 46 SGEKYFVSMPGKFRN-----NIWIKPGDFVIVKP-----IEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 46 DG~~rLa~IPGKfRK-----rIWIKrGD~VLVeP-----~D~~~kvKGeIV~ry~kd 92 (275)
+..+.+.-|.|++.- .+-+++||.|.+.+ |. .....++++++.++.
T Consensus 58 ~~~E~~~Vl~G~~~~~~~g~~~~l~~GD~v~ip~g~~H~~~-~~~~~~~~l~v~~P~ 113 (119)
T 3lwc_A 58 AVDDVMIVLEGRLSVSTDGETVTAGPGEIVYMPKGETVTIR-SHEEGALTAYVTYPH 113 (119)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCEEEEE-EEEEEEEEEEEEECC
T ss_pred CCCEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCEEEEE-cCCCCeEEEEEECCC
Confidence 445666666666654 36799999999984 22 113678899998876
No 58
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.45 E-value=1.9e+02 Score=25.11 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCCCCCc-EEEEEEEecCCceEEEEeCCCcEEEEEecccc----c--ceeeeeCCCEEEEeeec
Q psy10593 20 RVPEDLN-NIVKITQNSGNNLHQIENHSGEKYFVSMPGKF----R--NNIWIKPGDFVIVKPIE 76 (275)
Q Consensus 20 ~lP~egQ-~IgrVv~~lG~nlfeVec~DG~~rLa~IPGKf----R--KrIWIKrGD~VLVeP~D 76 (275)
..|..|+ ++|+|+..... .+.|...+...=+.++..=. . .+=.++.||.|.+.-..
T Consensus 53 y~p~~GDiV~G~V~~v~~~-~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~ 115 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAAN-GWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 115 (229)
T ss_dssp CCCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEE
Confidence 3577665 78999997654 77888876655555543211 1 12368999999988543
No 59
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=20.05 E-value=1e+02 Score=24.93 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=24.6
Q ss_pred eeeeeCCCEEEEeeecCCCCeEEEEEEEeChh
Q psy10593 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92 (275)
Q Consensus 61 rIWIKrGD~VLVeP~D~~~kvKGeIV~ry~kd 92 (275)
.+-|+.||.|.|---.+- ...|.|+.++.+.
T Consensus 40 ~~~IkkGD~V~Vi~G~dK-Gk~GkV~~V~~k~ 70 (120)
T 1vq8_T 40 NVRVNAGDTVEVLRGDFA-GEEGEVINVDLDK 70 (120)
T ss_dssp EEECCTTCEEEECSSTTT-TCEEEEEEEETTT
T ss_pred cccccCCCEEEEEecCCC-CCEEEEEEEECCC
Confidence 478999999999854442 3689999999765
Done!