RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10593
(275 letters)
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 67.4 bits (165), Expect = 4e-15
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRN 60
M++ + + ++ + E+ + I Q G + ++ G+ +PG+ +N
Sbjct: 1 MAEQQQEQQIRVRIPR-----KEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKN 55
Query: 61 NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPI 106
IW++ GD VIVKP E K +I K + +LK++ L +
Sbjct: 56 RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLDEL 101
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 64.5 bits (157), Expect = 1e-13
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 1/119 (0%)
Query: 2 SKATKRKHVQKELLSQEYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNN 61
K +R + E +E ED ++ + GN + G K + GK R
Sbjct: 8 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 67
Query: 62 IWIKPGDFVIVKPIEEGNKVKAEIEQILDKKYISFLKQQLKLPPIENGDIVHHFQEIGE 120
+WI D ++V + KA++ + LK +LP + F +
Sbjct: 68 VWINTSDIILVGL-RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDD 125
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 33.1 bits (76), Expect = 0.003
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 30 KITQNSGNNLHQIENHSGEKYFVSMPGKFR-NNIWIKPGDFVIVKP 74
+ + N + ++E +G + GK R N I I GD V V+
Sbjct: 11 TVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEL 56
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 32.3 bits (74), Expect = 0.008
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 30 KITQNSGNNLHQIENHSGEKYFVSMPGKFR-NNIWIKPGDFVIVKP 74
+T+ N +++ SG + + GK R + I I PGD V+V+
Sbjct: 12 VVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEI 57
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 66
Score = 31.3 bits (71), Expect = 0.017
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 45 HSGEKYFVSMPGKFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQILDKK 92
+GE+ + GKFR N+ I GD V P E G+ V IE +L +K
Sbjct: 21 ETGERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGV---IENVLHRK 66
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 67
Score = 28.9 bits (65), Expect = 0.11
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 43 ENHSGEKYFVSMPGKFRN-NIWIKPGDFVIVKPIEEGNKVKAEIEQILD 90
S + G FR I GD+V+ + + + + +I +
Sbjct: 20 SEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDK---EGYLMEIKE 65
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 79
Score = 28.1 bits (63), Expect = 0.26
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 14 LLSQ-EYRVPEDLNNIVKITQNSGNNLHQIENHSGEKYFVSMPGKFRNNIWIKPGDFVIV 72
LL+Q + ++ + + + +E + + YF+ P + GD +I
Sbjct: 4 LLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFI--PPPQMKKVM--HGDRIIA 59
Query: 73 KPIEEGNKVKAEIEQILD 90
E + AE E++++
Sbjct: 60 VIHSEKERESAEPEELVE 77
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 167
Score = 27.4 bits (61), Expect = 1.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 84 EIEQILDKKYISFLKQQ------LKLPPIENGDI 111
EIE+IL K++ F+ + L+ P+E DI
Sbjct: 80 EIEKILCHKFMRFMMMRAENFFILRRKPVEGYDI 113
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 101
Score = 26.4 bits (58), Expect = 1.5
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 53 SMPGKFRNNIWIKPGDFVIVKPIEE 77
SM + G ++V P +
Sbjct: 14 SMTAPTGSKPSFPDGMLILVDPEQA 38
>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 25.9 bits (57), Expect = 2.3
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 52 VSMPGKFRNNIWIKPGDFVIVKPIE 76
V + RNN GD V V+ +
Sbjct: 67 VRIDSVMRNNCGASIGDKVKVRKVR 91
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal
domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 25.5 bits (56), Expect = 2.8
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 48 EKYFVSMPGKFRNNIWIKPGDFVIVKP 74
+ M RNN+ ++ GD + ++P
Sbjct: 58 SDEKIRMNRVVRNNLRVRLGDVISIQP 84
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 206
Score = 26.7 bits (58), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1 MSKATKRKHVQKELLSQEYRVPEDLNNIVKI 31
+S A K + V ELL E +DLN +++
Sbjct: 2 LSDADKLRKVICELLETERTYVKDLNCLMER 32
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.8 bits (59), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 120 EQQAKPYRDLTLHLLNKEEGNKVKAEIEQILDK 152
EQQA+ DL L L E K+ E +++LD+
Sbjct: 423 EQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 455
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 25.3 bits (55), Expect = 4.1
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 64 IKP-GDFVIVKPIEEGNKVKAEI 85
IKP GD V+VK IEE K K I
Sbjct: 4 IKPLGDRVVVKRIEEEPKTKGGI 26
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli
[TaxId: 562]}
Length = 97
Score = 24.8 bits (54), Expect = 5.3
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 64 IKP-GDFVIVKPIEEGNKVKAEI 85
I+P D VIVK E K I
Sbjct: 3 IRPLHDRVIVKRKEVETKSAGGI 25
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 99
Score = 24.4 bits (53), Expect = 7.9
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 64 IKP-GDFVIVKPIEEGNKVK 82
IKP D ++V+ E
Sbjct: 5 IKPLEDKILVQANEAETTTA 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,045,131
Number of extensions: 49970
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 37
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)