BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10596
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
 pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
          Length = 467

 Score = 38.1 bits (87), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 8   PYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLS 53
           PY+ A+P+V    L   + FL+LATDGLWE +   +    V  +L+
Sbjct: 322 PYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLT 367



 Score = 38.1 bits (87), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 63  PYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLS 108
           PY+ A+P+V    L   + FL+LATDGLWE +   +    V  +L+
Sbjct: 322 PYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLT 367


>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
           (Pdp1)
 pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
           (Pdp1)
          Length = 467

 Score = 38.1 bits (87), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 8   PYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLS 53
           PY+ A+P+V    L   + FL+LATDGLWE +   +    V  +L+
Sbjct: 322 PYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLT 367



 Score = 38.1 bits (87), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 63  PYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLS 108
           PY+ A+P+V    L   + FL+LATDGLWE +   +    V  +L+
Sbjct: 322 PYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLT 367


>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
           Abi1
          Length = 326

 Score = 37.4 bits (85), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 99
           +S   G +  KP +  DP+V  +     +D L+LA+DG+W+ +T+ EA
Sbjct: 208 MSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEA 255



 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 44
            KP +  DP+V  +     +D L+LA+DG+W+ +T+ EA
Sbjct: 217 LKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEA 255


>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
          Length = 316

 Score = 37.4 bits (85), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 99
           +S   G +  KP +  DP+V  +     +D L+LA+DG+W+ +T+ EA
Sbjct: 193 MSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEA 240



 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 44
            KP +  DP+V  +     +D L+LA+DG+W+ +T+ EA
Sbjct: 202 LKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEA 240


>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
           Receptor Pyl1 In Complex With Type 2c Protein
           Phosphatase Abi1
 pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
           Receptor Pyl1 In Complex With Type 2c Protein
           Phosphatase Abi1
          Length = 319

 Score = 37.4 bits (85), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 99
           +S   G +  KP +  DP+V  +     +D L+LA+DG+W+ +T+ EA
Sbjct: 196 MSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEA 243



 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 44
            KP +  DP+V  +     +D L+LA+DG+W+ +T+ EA
Sbjct: 205 LKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEA 243


>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
           Receptor Pyl2 Mutant A93f In Complex With Type 2c
           Protein Phosphatase Abi2
 pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
 pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
           With Type 2c Protein Phosphatase Abi2
          Length = 324

 Score = 37.0 bits (84), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
           +S   G +  KP V  DP+V  +     +D L+LA+DGLW+ +T  E
Sbjct: 202 MSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEE 248



 Score = 34.3 bits (77), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
            KP V  DP+V  +     +D L+LA+DGLW+ +T  E
Sbjct: 211 LKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEE 248


>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
           Abscisic Acid (Aba)
 pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
           Abscisic Acid (Aba)
          Length = 340

 Score = 37.0 bits (84), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
           +S   G +  KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 225 MSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 271



 Score = 34.3 bits (77), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
            KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 234 LKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 271


>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
          Length = 350

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
           +S   G +  KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 235 MSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 281



 Score = 34.3 bits (77), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
            KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 244 LKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 281


>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
           Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
          Length = 343

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
           +S   G +  KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 228 MSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 274



 Score = 34.3 bits (77), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
            KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 237 LKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 274


>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
           Receptor Pyl2 Mutant A93f In Complex With Type 2c
           Protein Phosphatase Hab1
          Length = 341

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
           +S   G +  KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 226 MSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 272



 Score = 34.3 bits (77), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
            KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 235 LKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 272


>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
           Complex With The Hab1 Type 2c Phosphatase Catalytic
           Domain
 pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
           Hab1 Phosphatase And Abscisic Acid
          Length = 337

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
           +S   G +  KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 222 MSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 268



 Score = 34.3 bits (77), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
            KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 231 LKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 268


>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
           With Hab1
          Length = 321

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 52  LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
           +S   G +  KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 211 MSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 257



 Score = 34.3 bits (77), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 6   FKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
            KPYV  +P+V  +     ++ L+LA+DGLW+ +   E
Sbjct: 220 LKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQE 257


>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
           Toxoplasma Gondii
 pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
           Toxoplasma Gondii
 pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
           Toxoplasma Gondii
          Length = 324

 Score = 31.2 bits (69), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 57  GAKDFKPY-VCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 99
           G KD K Y +   PDV  + +       +LATDGLW+  +  +A
Sbjct: 234 GGKDLKXYGLSNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQA 277



 Score = 28.9 bits (63), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 1   MSAKDFKPY-VCADPDVICLDLDGSEDFLLLATDGLWEKVTELEA 44
              KD K Y +   PDV  + +       +LATDGLW+  +  +A
Sbjct: 233 FGGKDLKXYGLSNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQA 277


>pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription
           Initiation Factor Rrn3
 pdb|3TJ1|B Chain B, Crystal Structure Of Rna Polymerase I Transcription
           Initiation Factor Rrn3
          Length = 649

 Score = 28.5 bits (62), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 55  QSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAA-SSVYTHLSEQ 110
           +SGA D       D D+I   +DG+E++ +  T G+ E  T+L++  + V TH+ EQ
Sbjct: 313 RSGAADGSQSDSEDMDII-EGMDGTEEYNVELTQGIKELSTKLDSILTLVSTHVEEQ 368


>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
 pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
          Length = 368

 Score = 28.5 bits (62), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 37  EKVTELEAASSVYTHLSEQSGAKDFKP 63
           E++  LEAA  +Y HL E   A+ F P
Sbjct: 159 ERLPLLEAAEGLYVHLQEGKPARTFPP 185


>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
           Complexed With Gdp
          Length = 368

 Score = 28.5 bits (62), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 37  EKVTELEAASSVYTHLSEQSGAKDFKP 63
           E++  LEAA  +Y HL E   A+ F P
Sbjct: 159 ERLPLLEAAEGLYVHLQEGKPARTFPP 185


>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
           COMPLEXED With Zn2+
          Length = 304

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 65  VCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTLFFLDEIW 124
           + A PD+  + +   ++F++LA DG+W  +T  +    V   +++    LS +   +E++
Sbjct: 221 ISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKI--CEELF 278

Query: 125 SMV--------GIGCSNL 134
                      G GC N+
Sbjct: 279 DHCLAPHTRGDGTGCDNM 296



 Score = 26.6 bits (57), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 10  VCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSE 54
           + A PD+  + +   ++F++LA DG+W  +T  +    V   +++
Sbjct: 221 ISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINK 265


>pdb|3PE7|A Chain A, Oligogalacturonate Lyase In Complex With Manganese
          Length = 388

 Score = 27.3 bits (59), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 18  CLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVCADPDVICLDLD 77
           C   DGS+     A DG W     L+  + V T L+E  G   F  ++  D D +    D
Sbjct: 42  CFTRDGSKLLFGGAFDGPWNYYL-LDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100

Query: 78  GSE 80
           G  
Sbjct: 101 GRN 103


>pdb|2J4O|A Chain A, Structure Of Tab1
          Length = 401

 Score = 26.2 bits (56), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 49  YTHLSEQSGAKDFKPYVCADPDVI-CLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHL 107
           YT +   S AK  KP + A+P++     LDG   FL+L ++GL++    LEAA       
Sbjct: 252 YTDIDLLSAAKS-KP-IIAEPEIHGAQPLDGVTGFLVLMSEGLYKA---LEAAHGPGQAN 306

Query: 108 SEQSGLLSTLF 118
            E + ++ T F
Sbjct: 307 QEIAAMIDTEF 317


>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
 pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
          Length = 353

 Score = 26.2 bits (56), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 49  YTHLSEQSGAKDFKPYVCADPDVI-CLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHL 107
           YT +   S AK  KP + A+P++     LDG   FL+L ++GL++    LEAA       
Sbjct: 235 YTDIDLLSAAKS-KP-IIAEPEIHGAQPLDGVTGFLVLMSEGLYKA---LEAAHGPGQAN 289

Query: 108 SEQSGLLSTLF 118
            E + ++ T F
Sbjct: 290 QEIAAMIDTEF 300


>pdb|2POM|A Chain A, Tab1 With Manganese Ion
          Length = 372

 Score = 26.2 bits (56), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 49  YTHLSEQSGAKDFKPYVCADPDVI-CLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHL 107
           YT +   S AK  KP + A+P++     LDG   FL+L ++GL++    LEAA       
Sbjct: 254 YTDIDLLSAAKS-KP-IIAEPEIHGAQPLDGVTGFLVLMSEGLYKA---LEAAHGPGQAN 308

Query: 108 SEQSGLLSTLF 118
            E + ++ T F
Sbjct: 309 QEIAAMIDTEF 319


>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
           In Complex With A Bisubstrate Inhibitor, Lys-Coa
          Length = 380

 Score = 26.2 bits (56), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 2   SAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWE 37
           +A    P V  DP + C  +DG + FL LA D   E
Sbjct: 319 AANSLPPIVDPDPLIPCDLMDGRDAFLTLARDRHLE 354


>pdb|1K7S|N Chain N, Fhud Complexed With Albomycin-Delta 2
          Length = 265

 Score = 25.4 bits (54), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 13  DPDVICLDLDGSEDFLLLATDGLWEKVTELEAAS 46
           D DV+C D D S+D   L    LW+ +  + A  
Sbjct: 201 DVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGR 234



 Score = 25.4 bits (54), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 68  DPDVICLDLDGSEDFLLLATDGLWEKVTELEAAS 101
           D DV+C D D S+D   L    LW+ +  + A  
Sbjct: 201 DVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGR 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,358,014
Number of Sequences: 62578
Number of extensions: 159574
Number of successful extensions: 471
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 57
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)