Query psy10596
Match_columns 136
No_of_seqs 201 out of 1383
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:24:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0699|consensus 100.0 1.3E-29 2.9E-34 201.6 3.4 117 3-135 366-496 (542)
2 KOG0697|consensus 100.0 6.1E-29 1.3E-33 192.0 6.3 116 1-135 159-284 (379)
3 KOG0698|consensus 99.9 2.8E-28 6.2E-33 194.7 6.2 118 3-135 178-297 (330)
4 PF00481 PP2C: Protein phospha 99.9 3.6E-25 7.9E-30 170.1 -2.1 114 3-134 136-254 (254)
5 KOG0700|consensus 99.9 1.1E-22 2.3E-27 163.5 5.2 112 3-125 243-376 (390)
6 PLN03145 Protein phosphatase 2 99.8 3.2E-21 7E-26 156.0 5.2 114 3-135 202-323 (365)
7 PTZ00224 protein phosphatase 2 99.7 3.4E-18 7.3E-23 139.1 5.9 113 3-135 141-264 (381)
8 COG0631 PTC1 Serine/threonine 99.4 3.9E-14 8.6E-19 110.1 2.6 73 51-135 172-245 (262)
9 KOG1323|consensus 99.4 5.1E-13 1.1E-17 106.3 6.8 77 49-125 364-455 (493)
10 smart00332 PP2Cc Serine/threon 99.2 1.1E-11 2.5E-16 93.9 5.5 83 50-135 168-251 (255)
11 cd00143 PP2Cc Serine/threonine 99.2 5.3E-11 1.1E-15 89.8 6.1 84 49-135 164-248 (254)
12 KOG0618|consensus 99.0 1.1E-10 2.4E-15 102.5 3.6 98 9-125 660-757 (1081)
13 KOG0698|consensus 98.9 6.6E-10 1.4E-14 89.0 2.5 52 1-52 218-270 (330)
14 KOG0697|consensus 98.9 1.3E-09 2.7E-14 85.3 3.2 90 1-93 197-296 (379)
15 KOG0700|consensus 98.9 2.3E-09 4.9E-14 86.9 4.5 51 5-55 310-360 (390)
16 KOG0699|consensus 98.6 7.7E-09 1.7E-13 83.5 0.4 54 1-54 403-465 (542)
17 PRK14559 putative protein seri 98.6 1E-07 2.3E-12 82.3 7.3 81 49-135 546-628 (645)
18 PF00481 PP2C: Protein phospha 98.5 1.1E-08 2.4E-13 78.5 -0.7 53 1-53 173-229 (254)
19 PLN03145 Protein phosphatase 2 98.2 1.2E-06 2.5E-11 71.4 2.9 50 1-50 238-294 (365)
20 KOG1323|consensus 97.6 2.2E-05 4.8E-10 63.2 1.8 46 5-50 384-433 (493)
21 KOG1379|consensus 97.3 0.002 4.3E-08 51.5 9.0 46 63-109 227-275 (330)
22 PTZ00224 protein phosphatase 2 97.1 0.00042 9E-09 56.9 3.3 49 1-50 177-235 (381)
23 smart00331 PP2C_SIG Sigma fact 97.0 0.01 2.2E-07 43.2 9.8 39 68-107 138-176 (193)
24 COG0631 PTC1 Serine/threonine 96.8 0.0011 2.5E-08 51.5 3.4 38 12-50 183-220 (262)
25 smart00332 PP2Cc Serine/threon 96.5 0.0023 4.9E-08 48.3 2.8 51 1-51 174-224 (255)
26 cd00143 PP2Cc Serine/threonine 96.2 0.0064 1.4E-07 45.5 3.7 50 1-50 171-220 (254)
27 TIGR02865 spore_II_E stage II 95.7 0.024 5.3E-07 50.4 5.8 67 68-135 686-757 (764)
28 PF13672 PP2C_2: Protein phosp 95.5 0.021 4.6E-07 42.1 4.3 84 17-110 112-198 (212)
29 PF07228 SpoIIE: Stage II spor 92.3 0.25 5.4E-06 35.6 4.3 65 68-135 113-186 (193)
30 KOG0640|consensus 82.3 5.1 0.00011 32.6 6.1 78 6-101 210-298 (430)
31 KOG0618|consensus 77.3 1.9 4.1E-05 39.6 2.4 46 4-49 694-739 (1081)
32 PRK14559 putative protein seri 75.6 3.8 8.3E-05 36.1 3.9 25 12-37 561-585 (645)
33 KOG3463|consensus 67.8 6.1 0.00013 26.8 2.6 12 78-89 91-102 (109)
34 COG2208 RsbU Serine phosphatas 65.7 20 0.00044 28.9 5.8 55 68-125 285-347 (367)
35 PF09436 DUF2016: Domain of un 49.9 11 0.00024 23.8 1.4 21 76-96 23-43 (72)
36 PF07569 Hira: TUP1-like enhan 35.7 1.9E+02 0.0041 21.7 6.8 34 5-40 5-38 (219)
37 KOG1026|consensus 35.4 33 0.00071 31.1 2.5 33 93-125 708-743 (774)
38 KOG1379|consensus 34.1 22 0.00048 28.8 1.2 23 26-48 247-269 (330)
39 cd01457 vWA_ORF176_type VWA OR 29.9 1.1E+02 0.0024 22.1 4.4 53 80-134 108-176 (199)
40 PF14014 DUF4230: Protein of u 29.0 1.1E+02 0.0024 21.2 4.0 42 64-106 73-115 (157)
41 KOG2614|consensus 23.8 38 0.00082 28.5 0.9 12 83-94 154-165 (420)
42 PRK05457 heat shock protein Ht 21.3 1.6E+02 0.0034 23.2 4.0 58 51-108 85-143 (284)
43 cd06409 PB1_MUG70 The MUG70 pr 20.7 1.2E+02 0.0025 19.7 2.6 62 25-106 13-74 (86)
No 1
>KOG0699|consensus
Probab=99.95 E-value=1.3e-29 Score=201.60 Aligned_cols=117 Identities=26% Similarity=0.395 Sum_probs=108.1
Q ss_pred CCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCC---------cccccCCceEE
Q psy10596 3 AKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFK---------PYVCADPDVIC 73 (136)
Q Consensus 3 d~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k---------~~v~~~P~v~~ 73 (136)
..||||-..-|-. ||+++|| .| .-|| ||.+ +|.+||+|||+.+| ++|++-|+|+.
T Consensus 366 S~DHKPEDevE~~-RI~~AGG----~v-tlDG--RVNG--------GLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~ 429 (542)
T KOG0699|consen 366 SVDHKPEDEVETN-RIHAAGG----QV-TLDG--RVNG--------GLNLSRAFGDHAYKKNQELPLEEQMISALPDIKI 429 (542)
T ss_pred ccCCCcccHHHHH-HHHhcCC----eE-eecc--eecC--------ccchhhhhhhhhhhcccCCChHHHHhhhccccee
Confidence 4699999999998 9999999 44 3467 5677 79999999999987 37999999999
Q ss_pred EecCCCCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHh----ccCCCCCCCC
Q psy10596 74 LDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWS----MVGIGCSNLG 135 (136)
Q Consensus 74 ~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a----~~~~~~Dn~~ 135 (136)
..|+++++|+||||||||.+||+|++|+|||..+..+...+.+| +|+|.||| +.|.||||||
T Consensus 430 l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDGTGCDNMT 496 (542)
T KOG0699|consen 430 LALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGDGTGCDNMT 496 (542)
T ss_pred EeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCCcCCCcce
Confidence 99999999999999999999999999999999999999999999 99999999 8899999998
No 2
>KOG0697|consensus
Probab=99.95 E-value=6.1e-29 Score=192.04 Aligned_cols=116 Identities=23% Similarity=0.370 Sum_probs=105.6
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCC---------cccccCCce
Q psy10596 1 MSAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFK---------PYVCADPDV 71 (136)
Q Consensus 1 ~gd~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k---------~~v~~~P~v 71 (136)
|+..||||+.|.|++ ||..+|| -||- -|+.+ .|+|||+|||+.+| ++|+++|+|
T Consensus 159 f~TqDHKP~~p~Eke-RIqnAGG----SVMI----qRvNG--------sLAVSRAlGDydyK~v~~kgp~eQlVSPEPev 221 (379)
T KOG0697|consen 159 FSTQDHKPYLPKEKE-RIQNAGG----SVMI----QRVNG--------SLAVSRALGDYDYKNVPGKGPTEQLVSPEPEV 221 (379)
T ss_pred EeccCCCCCChHHHH-HHhcCCC----eEEE----EEecc--------eeeeehhccCcccccCCCCCchhcccCCCCce
Confidence 678999999999999 9999999 3442 36666 68999999999987 479999999
Q ss_pred EEEecCCCCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHhccCCCCCCCC
Q psy10596 72 ICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMVGIGCSNLG 135 (136)
Q Consensus 72 ~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~~~~~Dn~~ 135 (136)
........|+|+|+||||+||+|+++|+++||+..+.-.......| +++|.||.. ++.||||
T Consensus 222 ~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhK--GSRDNMs 284 (379)
T KOG0697|consen 222 YIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHK--GSRDNMS 284 (379)
T ss_pred EEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhc--cCccCce
Confidence 9999998999999999999999999999999999999999999999 999999985 6799997
No 3
>KOG0698|consensus
Probab=99.95 E-value=2.8e-28 Score=194.69 Aligned_cols=118 Identities=24% Similarity=0.370 Sum_probs=100.9
Q ss_pred CCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCC-cccccCCceEEEecCCCCc
Q psy10596 3 AKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFK-PYVCADPDVICLDLDGSED 81 (136)
Q Consensus 3 d~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k-~~v~~~P~v~~~~l~~~~~ 81 (136)
..||||..+.|++ ||.++|| .|....|+||+.+ .|+|||+|||..+| ++|+++|++....++++++
T Consensus 178 s~DHkP~~~~E~~-RI~~~GG----~v~~~~~~~Rv~G--------~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~de 244 (330)
T KOG0698|consen 178 SVDHKPDREDERE-RIEAAGG----RVSNWGGVWRVNG--------VLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDE 244 (330)
T ss_pred CCCCCCCcHHHHH-HHHHcCC----EEEEcCCcceEec--------eEEEeeecCCHHhcCCcEecCCceEEEEcCCCCc
Confidence 5799999999999 9999999 8998888999999 69999999999999 8999999999999999999
Q ss_pred EEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHhccCCCCCCCC
Q psy10596 82 FLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMVGIGCSNLG 135 (136)
Q Consensus 82 flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~~~~~Dn~~ 135 (136)
|||||||||||++|+|||+++|+..+.......... .+...++ ...++||||
T Consensus 245 FLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~--~~~s~Dnit 297 (330)
T KOG0698|consen 245 FLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEAL--SRGSKDNIT 297 (330)
T ss_pred EEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHh--hcCCCCCeE
Confidence 999999999999999999999999982222222222 3344443 346899997
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.89 E-value=3.6e-25 Score=170.14 Aligned_cols=114 Identities=25% Similarity=0.327 Sum_probs=90.4
Q ss_pred CCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCCc----ccccCCceEEEecCC
Q psy10596 3 AKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKP----YVCADPDVICLDLDG 78 (136)
Q Consensus 3 d~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k~----~v~~~P~v~~~~l~~ 78 (136)
..||+|..+.|.+ ||++.|| .+.. .||+.+ .|++||+|||..+|+ +|+++|++..+++++
T Consensus 136 t~dH~~~~~~E~~-RI~~~gg----~v~~---~~rv~g--------~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~ 199 (254)
T PF00481_consen 136 TRDHKPSNPDERE-RIRKAGG----RVSE---NGRVNG--------VLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTP 199 (254)
T ss_dssp S---STTSHHHHH-HHHHTT-----GEEE---TEEETT--------TBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBT
T ss_pred ccccccchhhccc-eeecccc----cccc---chhhhh--------ccccccccccccccccccceeeeecccccccccc
Confidence 5799999999999 9999999 4443 577776 489999999999998 899999999999999
Q ss_pred CCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHhccCCCCCCC
Q psy10596 79 SEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMVGIGCSNL 134 (136)
Q Consensus 79 ~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~~~~~Dn~ 134 (136)
+++|||||||||||+++++|+++++++....+..+...+ .|++.+++. ++.|||
T Consensus 200 ~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~--gs~DNi 254 (254)
T PF00481_consen 200 DDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIAR--GSKDNI 254 (254)
T ss_dssp TEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHT--THHSHE
T ss_pred cceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc--CCCCCC
Confidence 999999999999999999999999999988766566666 889998875 557775
No 5
>KOG0700|consensus
Probab=99.87 E-value=1.1e-22 Score=163.50 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCC--------------------
Q psy10596 3 AKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFK-------------------- 62 (136)
Q Consensus 3 d~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k-------------------- 62 (136)
+.||...+..|.. ||+...++++-.|+... ||+.+ .|.+||||||..+|
T Consensus 243 S~dHn~~ne~Ev~-Rir~eHPdd~~~vv~~~--~RvkG--------~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t 311 (390)
T KOG0700|consen 243 STDHNASNEDEVR-RIRSEHPDDPHIVVNKH--WRVKG--------ILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGT 311 (390)
T ss_pred ChhhccccHHHHH-HHHHhCCCCcceEeecc--ceeeE--------EEEeeeeccceeecchhhccchhHhhcCCCCCCC
Confidence 5689999999999 99999999887776543 99999 79999999999775
Q ss_pred -cccccCCceEEEecCCCCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHh
Q psy10596 63 -PYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWS 125 (136)
Q Consensus 63 -~~v~~~P~v~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a 125 (136)
||++++|+++.+.|+++|+|||+|||||||+||+||||.+|.+++.......... .|+.++|.
T Consensus 312 ~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~ 376 (390)
T KOG0700|consen 312 PPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALG 376 (390)
T ss_pred CCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999988633333333 77888887
No 6
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.83 E-value=3.2e-21 Score=155.96 Aligned_cols=114 Identities=19% Similarity=0.335 Sum_probs=95.3
Q ss_pred CCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCCc-------ccccCCceEEEe
Q psy10596 3 AKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKP-------YVCADPDVICLD 75 (136)
Q Consensus 3 d~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k~-------~v~~~P~v~~~~ 75 (136)
.+||+|....|.. ||.+.|| .|. +| ++.+ .+++||+|||..+|. .++++|++..++
T Consensus 202 T~DH~~~~~~E~~-RI~~~Gg----~v~--~g--~v~g--------~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~ 264 (365)
T PLN03145 202 SRDHKPMCSKERK-RIEASGG----YVY--DG--YLNG--------QLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQ 264 (365)
T ss_pred cCCCCCCCHHHHH-HHHHcCC----cee--cc--eECC--------ccccccccccccccccccccCCCcceEEEEEEEE
Confidence 5799999999998 9999998 553 23 2222 468999999988763 378999999999
Q ss_pred cCCCCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHhccCCCCCCCC
Q psy10596 76 LDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMVGIGCSNLG 135 (136)
Q Consensus 76 l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~~~~~Dn~~ 135 (136)
+++++.|||||||||||+++++++++++++.+.+.......+ .|++.++.. .+.||+|
T Consensus 265 l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~r--gs~DNIT 323 (365)
T PLN03145 265 LTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKR--KSGDNLA 323 (365)
T ss_pred CCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCCCCEE
Confidence 999999999999999999999999999999887665555566 889988875 5689987
No 7
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.73 E-value=3.4e-18 Score=139.06 Aligned_cols=113 Identities=25% Similarity=0.271 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCC---------cccccCCceEE
Q psy10596 3 AKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFK---------PYVCADPDVIC 73 (136)
Q Consensus 3 d~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k---------~~v~~~P~v~~ 73 (136)
.+||+|..+.|+. ||.+.++ .+.. .|+.+ .+++||+|||..+| +.|+++|++..
T Consensus 141 T~DH~~~~~~E~~-RI~~~gg----~v~~----~Rv~G--------~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~ 203 (381)
T PTZ00224 141 TEDHKPNNPGERQ-RIEACGG----RVVS----NRVDG--------DLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTH 203 (381)
T ss_pred ccCCCCCCHHHHh-HHHHccC----Eecc----ccccC--------ceeeecccCCcccccccccccccCcceeeeEEEE
Confidence 5799999999998 9998888 4432 24444 47999999997644 45789999999
Q ss_pred EecCCCCcEEEEeccCCcc-cCChHHHHHHHHHhhhcccCccchH-HHHHHHHhccCCCCCCCC
Q psy10596 74 LDLDGSEDFLLLATDGLWE-KVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMVGIGCSNLG 135 (136)
Q Consensus 74 ~~l~~~~~flilasDGlwd-~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~~~~~Dn~~ 135 (136)
+.+.++ +||||||||||| +++++|+++++++.+.........+ .|++.++.. ++.||+|
T Consensus 204 ~~l~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~r--Gs~DNIT 264 (381)
T PTZ00224 204 LTCQSN-DFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRR--GSKDNIS 264 (381)
T ss_pred EECCCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCCCCEE
Confidence 999754 699999999999 7999999999998776555555556 889988875 5689987
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.44 E-value=3.9e-14 Score=110.09 Aligned_cols=73 Identities=29% Similarity=0.486 Sum_probs=62.8
Q ss_pred cccccCCCccCCcccccCCceEEEecCCCCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHhccCC
Q psy10596 51 HLSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMVGI 129 (136)
Q Consensus 51 ~vSRa~Gd~~~k~~v~~~P~v~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~~~ 129 (136)
++||++|+... .+|++....+.++ +|+||+||||||.+++++++++++. .......+ ++++.++. ++
T Consensus 172 ~ltralG~~~~-----~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~----~~~~~~~~~~li~~a~~--~g 239 (262)
T COG0631 172 ALTRALGDFDL-----LEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKN----SETPQEAADKLIELALE--GG 239 (262)
T ss_pred hhhhhcCCCcc-----cceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhc----CCCHHHHHHHHHHHHHh--cC
Confidence 69999999987 7999999999987 9999999999999999999999998 23444444 77777777 68
Q ss_pred CCCCCC
Q psy10596 130 GCSNLG 135 (136)
Q Consensus 130 ~~Dn~~ 135 (136)
|+||||
T Consensus 240 ~~DNiT 245 (262)
T COG0631 240 GPDNIT 245 (262)
T ss_pred CCCceE
Confidence 899997
No 9
>KOG1323|consensus
Probab=99.40 E-value=5.1e-13 Score=106.30 Aligned_cols=77 Identities=27% Similarity=0.430 Sum_probs=65.0
Q ss_pred cccccccCCCccC---------CcccccCCceEEEecCC----CCcEEEEeccCCcccCChHHHHHHHHHhhhcccC-cc
Q psy10596 49 YTHLSEQSGAKDF---------KPYVCADPDVICLDLDG----SEDFLLLATDGLWEKVTELEAASSVYTHLSEQSG-LL 114 (136)
Q Consensus 49 ~l~vSRa~Gd~~~---------k~~v~~~P~v~~~~l~~----~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~-~~ 114 (136)
-+.|||.+||+.+ ||++++.|+|++++++. .|+.+|+|+|||||++|++|+..+|+..+..... .+
T Consensus 364 TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp 443 (493)
T KOG1323|consen 364 TIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADP 443 (493)
T ss_pred hheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCCh
Confidence 5799999999975 68999999999999954 4779999999999999999999999999988663 44
Q ss_pred chH-HHHHHHHh
Q psy10596 115 STL-FFLDEIWS 125 (136)
Q Consensus 115 ~~~-~~~~~~~a 125 (136)
.+. ...+.+++
T Consensus 444 ~RYt~aaqdlva 455 (493)
T KOG1323|consen 444 SRYTQAAQDLVA 455 (493)
T ss_pred hHHHHHHHHHHH
Confidence 444 66666666
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.24 E-value=1.1e-11 Score=93.89 Aligned_cols=83 Identities=35% Similarity=0.524 Sum_probs=68.1
Q ss_pred ccccccCCCccCCcccccCCceEEEecCCCCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHhccC
Q psy10596 50 THLSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMVG 128 (136)
Q Consensus 50 l~vSRa~Gd~~~k~~v~~~P~v~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~~ 128 (136)
..+||++|+..+|+.++++|++....+....++|+|+|||+|+.++.+++.+++.+.... ......+ .+++.+...
T Consensus 168 ~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~~-- 244 (255)
T smart00332 168 LALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALAR-- 244 (255)
T ss_pred EecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHc--
Confidence 688999999999999999999999997556789999999999999999999999987643 1233344 666666653
Q ss_pred CCCCCCC
Q psy10596 129 IGCSNLG 135 (136)
Q Consensus 129 ~~~Dn~~ 135 (136)
.+.||+|
T Consensus 245 ~~~Dn~T 251 (255)
T smart00332 245 GSKDNIT 251 (255)
T ss_pred CCCCCeE
Confidence 6789987
No 11
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.17 E-value=5.3e-11 Score=89.79 Aligned_cols=84 Identities=31% Similarity=0.487 Sum_probs=68.0
Q ss_pred cccccccCCCccCCcccccCCceEEEecCCCCcEEEEeccCCcccCChHHHHHHHHHhhhcccCccchH-HHHHHHHhcc
Q psy10596 49 YTHLSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSMV 127 (136)
Q Consensus 49 ~l~vSRa~Gd~~~k~~v~~~P~v~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~~ 127 (136)
...+||++|+..+|+.+.++|++....+....++++|+|||+|+.++.+++.+++.+...+ ......+ ++++.+...
T Consensus 164 ~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~~- 241 (254)
T cd00143 164 VLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALRR- 241 (254)
T ss_pred ceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHhC-
Confidence 4688999999999999999999999999556788999999999999999999999886422 2334444 677766664
Q ss_pred CCCCCCCC
Q psy10596 128 GIGCSNLG 135 (136)
Q Consensus 128 ~~~~Dn~~ 135 (136)
.+.||+|
T Consensus 242 -~~~Dn~t 248 (254)
T cd00143 242 -GSHDNIT 248 (254)
T ss_pred -CCCCCEE
Confidence 3789986
No 12
>KOG0618|consensus
Probab=99.05 E-value=1.1e-10 Score=102.52 Aligned_cols=98 Identities=22% Similarity=0.287 Sum_probs=79.8
Q ss_pred CCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCCcccccCCceEEEecCCCCcEEEEecc
Q psy10596 9 YVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATD 88 (136)
Q Consensus 9 ~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k~~v~~~P~v~~~~l~~~~~flilasD 88 (136)
..+.|.+ ||+..+| ++..||....+. ..||++|.+.+-|.|-+.|+|....+++.|+|||+|.-
T Consensus 660 v~~eE~~-RI~~~~g-----~i~ed~k~ngvt----------~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~ 723 (1081)
T KOG0618|consen 660 VDREEYK-RIVDSKG-----FITEDNKLNGVT----------SSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNK 723 (1081)
T ss_pred CCHHHHH-HHHHhcC-----eecCCCeeecee----------eeeeecccccccccccCCCceeeEecccCceEEEEcch
Confidence 3667777 8888888 444588766666 78999999999999999999999999999999999999
Q ss_pred CCcccCChHHHHHHHHHhhhcccCccchHHHHHHHHh
Q psy10596 89 GLWEKVTELEAASSVYTHLSEQSGLLSTLFFLDEIWS 125 (136)
Q Consensus 89 Glwd~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a 125 (136)
+||++||.++|++.||+. +....+.-+++|.+.+
T Consensus 724 ~lW~~Lsid~a~~~vRn~---~dpL~AAkKL~d~AqS 757 (1081)
T KOG0618|consen 724 QLWSVLSIDTAVDAVRNV---EDPLLAAKKLCDLAQS 757 (1081)
T ss_pred HHhhhccHHHHHHHHhcC---CchHHHHHHHHHHHHh
Confidence 999999999999999943 2222222256666666
No 13
>KOG0698|consensus
Probab=98.90 E-value=6.6e-10 Score=89.05 Aligned_cols=52 Identities=31% Similarity=0.638 Sum_probs=49.5
Q ss_pred CCCCCCC-CCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccc
Q psy10596 1 MSAKDFK-PYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHL 52 (136)
Q Consensus 1 ~gd~dhk-p~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~v 52 (136)
|||...| +.+.+||++.+..+..+++|+|+||||+||++++|++++++...+
T Consensus 218 ~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~ 270 (330)
T KOG0698|consen 218 FGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDEL 270 (330)
T ss_pred cCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHh
Confidence 7999999 999999999999999999999999999999999999999998765
No 14
>KOG0697|consensus
Probab=98.87 E-value=1.3e-09 Score=85.27 Aligned_cols=90 Identities=21% Similarity=0.362 Sum_probs=66.5
Q ss_pred CCCCCCC---------CCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCCcccccCCce
Q psy10596 1 MSAKDFK---------PYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVCADPDV 71 (136)
Q Consensus 1 ~gd~dhk---------p~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k~~v~~~P~v 71 (136)
|||.|+| +.++.||++-++.....++|+|+||||+|||+++++.+.|+...+.- ...|.......-++
T Consensus 197 lGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~V---t~dL~~vcn~VvDt 273 (379)
T KOG0697|consen 197 LGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEV---TSDLEEVCNDVVDT 273 (379)
T ss_pred ccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhhee---cccHHHHHHHHHHH
Confidence 6899998 46999999999999888999999999999999999999998654431 12233333334444
Q ss_pred EEEec-CCCCcEEEEeccCCccc
Q psy10596 72 ICLDL-DGSEDFLLLATDGLWEK 93 (136)
Q Consensus 72 ~~~~l-~~~~~flilasDGlwd~ 93 (136)
+.+.- .++...++++-.|-=++
T Consensus 274 CLhKGSRDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 274 CLHKGSRDNMSIVLVCFPGAPKV 296 (379)
T ss_pred HHhccCccCceEEEEecCCCCCC
Confidence 55554 34577788887887655
No 15
>KOG0700|consensus
Probab=98.86 E-value=2.3e-09 Score=86.94 Aligned_cols=51 Identities=37% Similarity=0.657 Sum_probs=47.2
Q ss_pred CCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhccccccccccc
Q psy10596 5 DFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQ 55 (136)
Q Consensus 5 dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa 55 (136)
..+||+++||.|+..+++++|+|+|+|+||+|+.++++|++.+|...++-.
T Consensus 310 ~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~ 360 (390)
T KOG0700|consen 310 GTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK 360 (390)
T ss_pred CCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC
Confidence 457999999999999999999999999999999999999999998887743
No 16
>KOG0699|consensus
Probab=98.62 E-value=7.7e-09 Score=83.47 Aligned_cols=54 Identities=26% Similarity=0.549 Sum_probs=48.8
Q ss_pred CCCCCCCC---------CCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccccccc
Q psy10596 1 MSAKDFKP---------YVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSE 54 (136)
Q Consensus 1 ~gd~dhkp---------~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSR 54 (136)
|||+-||. ++++-|+|++..++++++|+|+||||+|.+++.|+++.|++.-++.
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~ 465 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAK 465 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhc
Confidence 68888883 5888999999999999999999999999999999999999887763
No 17
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=98.62 E-value=1e-07 Score=82.34 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=57.9
Q ss_pred cccccccCCCccCCcccccCCceEEEecCCCCcEEEEeccCCccc-CChHHHHHHHHHhhhcccCccchH-HHHHHHHhc
Q psy10596 49 YTHLSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEK-VTELEAASSVYTHLSEQSGLLSTL-FFLDEIWSM 126 (136)
Q Consensus 49 ~l~vSRa~Gd~~~k~~v~~~P~v~~~~l~~~~~flilasDGlwd~-~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a~ 126 (136)
+..+||++|+...+. .+|++..+.+.+ +++++|+||||||. +-.....+.+...+.........+ .|++.++..
T Consensus 546 ~~~LTrALG~~~~~~---l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~ 621 (645)
T PRK14559 546 AYQLTQALGPRDNSA---IQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQY 621 (645)
T ss_pred cceeeeccCCCCCCc---ccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 457999999876543 489999999975 68999999999994 233334444455555555555566 888887765
Q ss_pred cCCCCCCCC
Q psy10596 127 VGIGCSNLG 135 (136)
Q Consensus 127 ~~~~~Dn~~ 135 (136)
+|-||+|
T Consensus 622 --gg~DNIT 628 (645)
T PRK14559 622 --NGHDNIT 628 (645)
T ss_pred --CCCCcEE
Confidence 5689997
No 18
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=98.54 E-value=1.1e-08 Score=78.54 Aligned_cols=53 Identities=38% Similarity=0.669 Sum_probs=43.0
Q ss_pred CCCCCCCC----CCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhccccccccc
Q psy10596 1 MSAKDFKP----YVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLS 53 (136)
Q Consensus 1 ~gd~dhkp----~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vS 53 (136)
|||.++|| .+.+||+++..++..+++|+|++|||+|++++++++++++.....
T Consensus 173 lGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~ 229 (254)
T PF00481_consen 173 LGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLN 229 (254)
T ss_dssp EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHH
T ss_pred cccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHh
Confidence 68999998 999999999999999999999999999999999999888765543
No 19
>PLN03145 Protein phosphatase 2c; Provisional
Probab=98.17 E-value=1.2e-06 Score=71.38 Aligned_cols=50 Identities=18% Similarity=0.474 Sum_probs=42.1
Q ss_pred CCCCCCCC-------CCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccc
Q psy10596 1 MSAKDFKP-------YVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYT 50 (136)
Q Consensus 1 ~gd~dhkp-------~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l 50 (136)
|||...|. .+++||+++...+...++|+|++|||+|++++++++++++..
T Consensus 238 lGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~ 294 (365)
T PLN03145 238 LGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARR 294 (365)
T ss_pred cccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHH
Confidence 57766653 367899999999999899999999999999999998776643
No 20
>KOG1323|consensus
Probab=97.65 E-value=2.2e-05 Score=63.19 Aligned_cols=46 Identities=37% Similarity=0.671 Sum_probs=38.8
Q ss_pred CCCCCCCCCCcEEEEecC----CCcceEEEecCCceeeeehhhhcccccc
Q psy10596 5 DFKPYVCADPDVICLDLD----GSEDFLLLATDGLWEKVTELEAASSVYT 50 (136)
Q Consensus 5 dhkp~~~~E~~iri~~~g----g~~~f~vla~dG~w~v~~~~~~~~~v~l 50 (136)
.-||+.++-|++|+..+. +.|+.+|+|+||+|||.+++++..++..
T Consensus 384 ~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs 433 (493)
T KOG1323|consen 384 SIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRS 433 (493)
T ss_pred ccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHH
Confidence 346999999999999885 4578999999999999999998665543
No 21
>KOG1379|consensus
Probab=97.33 E-value=0.002 Score=51.48 Aligned_cols=46 Identities=33% Similarity=0.533 Sum_probs=37.0
Q ss_pred cccccCCc---eEEEecCCCCcEEEEeccCCcccCChHHHHHHHHHhhhc
Q psy10596 63 PYVCADPD---VICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSE 109 (136)
Q Consensus 63 ~~v~~~P~---v~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~~~ 109 (136)
.+++..|+ +..+++.+. +.+|+|||||||.+.+++++.++......
T Consensus 227 ~~~~d~p~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~ 275 (330)
T KOG1379|consen 227 SYISDVPDSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDAR 275 (330)
T ss_pred ccccCCccccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhcc
Confidence 34555554 567777654 78999999999999999999999988774
No 22
>PTZ00224 protein phosphatase 2C; Provisional
Probab=97.12 E-value=0.00042 Score=56.87 Aligned_cols=49 Identities=35% Similarity=0.548 Sum_probs=38.2
Q ss_pred CCCCCCC---------CCCCCCCcEEEEecCCCcceEEEecCCcee-eeehhhhcccccc
Q psy10596 1 MSAKDFK---------PYVCADPDVICLDLDGSEDFLLLATDGLWE-KVTELEAASSVYT 50 (136)
Q Consensus 1 ~gd~dhk---------p~~~~E~~iri~~~gg~~~f~vla~dG~w~-v~~~~~~~~~v~l 50 (136)
|||.++| +.+.++|+++...+.. .+|+|++|||+|+ +++++++++++..
T Consensus 177 lGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~ 235 (381)
T PTZ00224 177 FGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKE 235 (381)
T ss_pred cCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHHHHH
Confidence 5776544 3456899999888874 5699999999999 7999998877653
No 23
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=97.04 E-value=0.01 Score=43.20 Aligned_cols=39 Identities=36% Similarity=0.349 Sum_probs=31.5
Q ss_pred CCceEEEecCCCCcEEEEeccCCcccCChHHHHHHHHHhh
Q psy10596 68 DPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHL 107 (136)
Q Consensus 68 ~P~v~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~~~~ 107 (136)
.++.....+.++ +.|++.|||+||.++.++..+++++..
T Consensus 138 ~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~ 176 (193)
T smart00331 138 EVDVRELTLEPG-DLLLLYTDGLTEARNPERLEELLEELL 176 (193)
T ss_pred cceeEEEeeCCC-CEEEEECCCccccCChHHHHHHHHHhc
Confidence 356677777765 678899999999999988888888764
No 24
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=96.84 E-value=0.0011 Score=51.52 Aligned_cols=38 Identities=39% Similarity=0.764 Sum_probs=33.3
Q ss_pred CCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccc
Q psy10596 12 ADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYT 50 (136)
Q Consensus 12 ~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l 50 (136)
.+|++....+.+. +|++++|||+|+.++.++.+.++..
T Consensus 183 ~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~ 220 (262)
T COG0631 183 LEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKN 220 (262)
T ss_pred cceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhc
Confidence 7899899999887 9999999999999999887777653
No 25
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=96.48 E-value=0.0023 Score=48.27 Aligned_cols=51 Identities=41% Similarity=0.780 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhccccccc
Q psy10596 1 MSAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTH 51 (136)
Q Consensus 1 ~gd~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~ 51 (136)
+|+..+||.+..+|++...++-...+++++++||+|+.+..++...++..+
T Consensus 174 ~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~ 224 (255)
T smart00332 174 IGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKH 224 (255)
T ss_pred cCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHH
Confidence 466777888899999888886445678999999999999988876665443
No 26
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=96.15 E-value=0.0064 Score=45.52 Aligned_cols=50 Identities=42% Similarity=0.753 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhcccccc
Q psy10596 1 MSAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYT 50 (136)
Q Consensus 1 ~gd~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l 50 (136)
||+...||....+|+++...+....+++++++||+|+.+..++...++..
T Consensus 171 lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~ 220 (254)
T cd00143 171 LGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRS 220 (254)
T ss_pred cCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHH
Confidence 45666667788999999888855567899999999999988776555543
No 27
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=95.68 E-value=0.024 Score=50.43 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=40.7
Q ss_pred CCceEEEecCCCCcEEEEeccCCcccCChHH-HHHHHHHhhhcc--cCccchH-HHHHHHHhc-cCCCCCCCC
Q psy10596 68 DPDVICLDLDGSEDFLLLATDGLWEKVTELE-AASSVYTHLSEQ--SGLLSTL-FFLDEIWSM-VGIGCSNLG 135 (136)
Q Consensus 68 ~P~v~~~~l~~~~~flilasDGlwd~~s~~~-~~~~v~~~~~~~--~~~~~~~-~~~~~~~a~-~~~~~Dn~~ 135 (136)
+++....++.++ ++|++.|||+||..+.++ --+.+.+.+.+. ......+ .+++.++.. .+..-||||
T Consensus 686 ~~~~~~~~L~~G-D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~~~DD~T 757 (764)
T TIGR02865 686 DVELVRKKLKNG-DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGKIKDDMT 757 (764)
T ss_pred ccceEEEEeCCC-CEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCCCeE
Confidence 455566777655 789999999999986532 122233333322 2233334 777777763 344589997
No 28
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=95.54 E-value=0.021 Score=42.10 Aligned_cols=84 Identities=13% Similarity=0.304 Sum_probs=35.4
Q ss_pred EEEecCCCcceEEEecCCceeeeehhhhcccccccccccCCCccCCcccccCC--ceEEEecCCCCcEEEEeccCCcccC
Q psy10596 17 ICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVCADP--DVICLDLDGSEDFLLLATDGLWEKV 94 (136)
Q Consensus 17 ri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k~~v~~~P--~v~~~~l~~~~~flilasDGlwd~~ 94 (136)
.+..+|. -+.+++..+|.+..++......+. ..++.+... .+.+ ++....+. ....++|+|||+|+.+
T Consensus 112 ~~~~iGD-~~i~~~~~~g~~~~l~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~-~~d~ilL~SDG~~~~l 181 (212)
T PF13672_consen 112 YIFNIGD-SRIYVIRRNGEIQQLTDDHSGEYP--NQTRSLTGD------DPEPDVQYGSIPLE-EGDVILLCSDGVWDNL 181 (212)
T ss_dssp EEEEESS--EEEEEEETTEEEE-S---BHHHH--HCTTSCCHH------CCCTETEEEEEE---TT-EEEEE-HHHHTTS
T ss_pred EEEEECC-CeEEEEECCCEEEEcCCCccchhh--hhhhccCcc------ccccCCeEEEEEcC-CCCEEEEECcCccccC
Confidence 3444433 333344467777776654432332 112222222 1222 44445544 4578999999999999
Q ss_pred ChHH-HHHHHHHhhhcc
Q psy10596 95 TELE-AASSVYTHLSEQ 110 (136)
Q Consensus 95 s~~~-~~~~v~~~~~~~ 110 (136)
...+ ...++.+.+...
T Consensus 182 ~~~~~~~~~l~~~~~~~ 198 (212)
T PF13672_consen 182 RSYEDLEQFLKDLWNSL 198 (212)
T ss_dssp -HHHHHHHH--------
T ss_pred CCHHHHHHHhhhccccc
Confidence 7655 667777765543
No 29
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=92.34 E-value=0.25 Score=35.61 Aligned_cols=65 Identities=23% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCceEEEecCCCCcEEEEeccCCcccCChHHHH-------HHHHHhhhcccCccchH-HHHHHHHh-ccCCCCCCCC
Q psy10596 68 DPDVICLDLDGSEDFLLLATDGLWEKVTELEAA-------SSVYTHLSEQSGLLSTL-FFLDEIWS-MVGIGCSNLG 135 (136)
Q Consensus 68 ~P~v~~~~l~~~~~flilasDGlwd~~s~~~~~-------~~v~~~~~~~~~~~~~~-~~~~~~~a-~~~~~~Dn~~ 135 (136)
......+.+.+ .+.|++.||||+|..+.+.-. +++.+. ........+ .+++.+.. ..+...|++|
T Consensus 113 ~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~t 186 (193)
T PF07228_consen 113 DYQEQEIQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDIT 186 (193)
T ss_dssp CEEEEEEE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EE
T ss_pred cccceEEEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceE
Confidence 34445566654 467999999999998555433 333333 222233333 55655555 4556677765
No 30
>KOG0640|consensus
Probab=82.29 E-value=5.1 Score=32.62 Aligned_cols=78 Identities=24% Similarity=0.484 Sum_probs=51.3
Q ss_pred CCCCCCCCCcEEEEecCCCcceEEEecCCc-eeeeehhhhcccccccccccCCCccCCcccccCCc------eEEEecCC
Q psy10596 6 FKPYVCADPDVICLDLDGSEDFLLLATDGL-WEKVTELEAASSVYTHLSEQSGAKDFKPYVCADPD------VICLDLDG 78 (136)
Q Consensus 6 hkp~~~~E~~iri~~~gg~~~f~vla~dG~-w~v~~~~~~~~~v~l~vSRa~Gd~~~k~~v~~~P~------v~~~~l~~ 78 (136)
||-.-.+||- |-....+.-+|+.+++|-- .|+.. .+ .++-++++.|+ |+.+...+
T Consensus 210 ~K~~qd~~~v-rsiSfHPsGefllvgTdHp~~rlYd---------v~--------T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 210 FKVFQDTEPV-RSISFHPSGEFLLVGTDHPTLRLYD---------VN--------TYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred HHHhhcccee-eeEeecCCCceEEEecCCCceeEEe---------cc--------ceeEeeecCcccccccceeEEEecC
Confidence 3445567885 8888888888999888752 22221 01 12345666665 66677777
Q ss_pred CCcEEEEec-cC---CcccCChHHHHH
Q psy10596 79 SEDFLLLAT-DG---LWEKVTELEAAS 101 (136)
Q Consensus 79 ~~~flilas-DG---lwd~~s~~~~~~ 101 (136)
...+-|-|| || |||.+|+.-+-.
T Consensus 272 t~~lYvTaSkDG~IklwDGVS~rCv~t 298 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVSNRCVRT 298 (430)
T ss_pred CccEEEEeccCCcEEeeccccHHHHHH
Confidence 778888887 77 899999754433
No 31
>KOG0618|consensus
Probab=77.28 E-value=1.9 Score=39.61 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCcEEEEecCCCcceEEEecCCceeeeehhhhccccc
Q psy10596 4 KDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVY 49 (136)
Q Consensus 4 ~dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~~~~~~~~v~ 49 (136)
-+.-|.+-+-|.|+...+...+||+|++..++|.+++-.++++.++
T Consensus 694 ~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR 739 (1081)
T KOG0618|consen 694 FSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR 739 (1081)
T ss_pred ccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHh
Confidence 3445888899999999999999999999999999999998887665
No 32
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=75.58 E-value=3.8 Score=36.13 Aligned_cols=25 Identities=36% Similarity=0.768 Sum_probs=20.8
Q ss_pred CCCcEEEEecCCCcceEEEecCCcee
Q psy10596 12 ADPDVICLDLDGSEDFLLLATDGLWE 37 (136)
Q Consensus 12 ~E~~iri~~~gg~~~f~vla~dG~w~ 37 (136)
.+|+++...+.. +++++++|||+|+
T Consensus 561 l~Pdi~~~~L~~-gD~lLLCSDGL~D 585 (645)
T PRK14559 561 IQPDIQFLEIEE-DTLLLLCSDGLSD 585 (645)
T ss_pred ccceEEEEEcCC-CCEEEEECCCCCC
Confidence 478888888864 5789999999998
No 33
>KOG3463|consensus
Probab=67.80 E-value=6.1 Score=26.85 Aligned_cols=12 Identities=25% Similarity=0.471 Sum_probs=10.0
Q ss_pred CCCcEEEEeccC
Q psy10596 78 GSEDFLLLATDG 89 (136)
Q Consensus 78 ~~~~flilasDG 89 (136)
.-++.-|+||||
T Consensus 91 ~vdkvkIVACdg 102 (109)
T KOG3463|consen 91 TVDKVKIVACDG 102 (109)
T ss_pred ccceEEEEEecC
Confidence 356889999999
No 34
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=65.74 E-value=20 Score=28.90 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=32.4
Q ss_pred CCceEEEecCCCCcEEEEeccCCccc-------CChHHHHHHHHHhhhcccCccchH-HHHHHHHh
Q psy10596 68 DPDVICLDLDGSEDFLLLATDGLWEK-------VTELEAASSVYTHLSEQSGLLSTL-FFLDEIWS 125 (136)
Q Consensus 68 ~P~v~~~~l~~~~~flilasDGlwd~-------~s~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~a 125 (136)
.+.+....+.+ ++.+++.|||+-|. +..+.-.+.+.+. ....+...+ .+++.+..
T Consensus 285 ~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~ 347 (367)
T COG2208 285 QYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEE 347 (367)
T ss_pred cchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 44455666666 68999999999994 4445555555552 222233333 55555544
No 35
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=49.90 E-value=11 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=15.9
Q ss_pred cCCCCcEEEEeccCCcccCCh
Q psy10596 76 LDGSEDFLLLATDGLWEKVTE 96 (136)
Q Consensus 76 l~~~~~flilasDGlwd~~s~ 96 (136)
+....+-+++|+||+|=-+..
T Consensus 23 l~~~G~Rllva~nGv~lEv~r 43 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRR 43 (72)
T ss_pred cccCCcEEEEecCcEEEEEec
Confidence 344667899999999976653
No 36
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.66 E-value=1.9e+02 Score=21.72 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=18.9
Q ss_pred CCCCCCCCCCcEEEEecCCCcceEEEecCCceeeee
Q psy10596 5 DFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVT 40 (136)
Q Consensus 5 dhkp~~~~E~~iri~~~gg~~~f~vla~dG~w~v~~ 40 (136)
-..|..-..|- -..+..+. -.+++.++|...++.
T Consensus 5 l~P~i~Lgs~~-~~l~~~~~-~Ll~iT~~G~l~vWn 38 (219)
T PF07569_consen 5 LLPPIVLGSPV-SFLECNGS-YLLAITSSGLLYVWN 38 (219)
T ss_pred ccCcEecCCce-EEEEeCCC-EEEEEeCCCeEEEEE
Confidence 33455555554 44444443 367788999544444
No 37
>KOG1026|consensus
Probab=35.37 E-value=33 Score=31.11 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=27.3
Q ss_pred cCChHHHHHHHHHh--hhcccCccchH-HHHHHHHh
Q psy10596 93 KVTELEAASSVYTH--LSEQSGLLSTL-FFLDEIWS 125 (136)
Q Consensus 93 ~~s~~~~~~~v~~~--~~~~~~~~~~~-~~~~~~~a 125 (136)
.+|+|||++.|++. +..+...+..+ +|+.+||.
T Consensus 708 glSn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~ 743 (774)
T KOG1026|consen 708 GLSNQEVIECIRAGQLLSCPENCPTEVYSLMLECWN 743 (774)
T ss_pred ccchHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhh
Confidence 37899999999754 66677777787 99999998
No 38
>KOG1379|consensus
Probab=34.08 E-value=22 Score=28.81 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=18.6
Q ss_pred ceEEEecCCceeeeehhhhcccc
Q psy10596 26 DFLLLATDGLWEKVTELEAASSV 48 (136)
Q Consensus 26 ~f~vla~dG~w~v~~~~~~~~~v 48 (136)
+.+|+|+||+||=+..++...++
T Consensus 247 DvIilATDGlfDNl~e~~Il~il 269 (330)
T KOG1379|consen 247 DVIILATDGLFDNLPEKEILSIL 269 (330)
T ss_pred CEEEEecccccccccHHHHHHHH
Confidence 46889999999988887766554
No 39
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=29.91 E-value=1.1e+02 Score=22.12 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=30.6
Q ss_pred CcEEEEeccCCcccCChHHHHHHHHHhhhc---c-------------cCccchHHHHHHHHhccCCCCCCC
Q psy10596 80 EDFLLLATDGLWEKVTELEAASSVYTHLSE---Q-------------SGLLSTLFFLDEIWSMVGIGCSNL 134 (136)
Q Consensus 80 ~~flilasDGlwd~~s~~~~~~~v~~~~~~---~-------------~~~~~~~~~~~~~~a~~~~~~Dn~ 134 (136)
...+|+-|||... +.+++.+.+.+...+ . ......++-|+..+...|.-+||.
T Consensus 108 ~~~vIiiTDG~~~--d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~v 176 (199)
T cd01457 108 GETFLVITDGAPD--DKDAVERVIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIV 176 (199)
T ss_pred ceEEEEEcCCCCC--cHHHHHHHHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccce
Confidence 5789999999986 344455555544332 1 011122345666666566667875
No 40
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=28.97 E-value=1.1e+02 Score=21.23 Aligned_cols=42 Identities=10% Similarity=0.302 Sum_probs=28.4
Q ss_pred ccccCCceEEEecCCCCcEEEE-eccCCcccCChHHHHHHHHHh
Q psy10596 64 YVCADPDVICLDLDGSEDFLLL-ATDGLWEKVTELEAASSVYTH 106 (136)
Q Consensus 64 ~v~~~P~v~~~~l~~~~~flil-asDGlwd~~s~~~~~~~v~~~ 106 (136)
...+.|.+..+.++.+ .+-+. -..|+|..++.++..++.++.
T Consensus 73 I~LP~~~i~~~~id~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 73 ITLPPPEILSVEIDED-SIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred EECCCcEEeeeecCcc-ceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 3577888888887754 34444 557777877777666666554
No 41
>KOG2614|consensus
Probab=23.80 E-value=38 Score=28.49 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=9.7
Q ss_pred EEEeccCCcccC
Q psy10596 83 LLLATDGLWEKV 94 (136)
Q Consensus 83 lilasDGlwd~~ 94 (136)
|+|||||.|-.+
T Consensus 154 lligCDGa~S~V 165 (420)
T KOG2614|consen 154 LLIGCDGAYSKV 165 (420)
T ss_pred EEEEcCchHHHH
Confidence 788999998653
No 42
>PRK05457 heat shock protein HtpX; Provisional
Probab=21.31 E-value=1.6e+02 Score=23.16 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=36.4
Q ss_pred cccccCCCccCCcccccCCceEEEecC-CCCcEEEEeccCCcccCChHHHHHHHHHhhh
Q psy10596 51 HLSEQSGAKDFKPYVCADPDVICLDLD-GSEDFLLLATDGLWEKVTELEAASSVYTHLS 108 (136)
Q Consensus 51 ~vSRa~Gd~~~k~~v~~~P~v~~~~l~-~~~~flilasDGlwd~~s~~~~~~~v~~~~~ 108 (136)
.+++..|-..-+-++...+....+... ....-+|+-++|+++.++.+|...++...+.
T Consensus 85 ~la~~~g~p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L~~~El~aVlAHElg 143 (284)
T PRK05457 85 RQARQAGIGMPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNMSRDEVEAVLAHEIS 143 (284)
T ss_pred HHHHhCCCCCCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhCCHHHHHHHHHHHHH
Confidence 445555543222234444444444432 1245688899999999999999998877765
No 43
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=20.74 E-value=1.2e+02 Score=19.74 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=35.3
Q ss_pred cceEEEecCCceeeeehhhhcccccccccccCCCccCCcccccCCceEEEecCCCCcEEEEeccCCcccCChHHHHHHHH
Q psy10596 25 EDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVY 104 (136)
Q Consensus 25 ~~f~vla~dG~w~v~~~~~~~~~v~l~vSRa~Gd~~~k~~v~~~P~v~~~~l~~~~~flilasDGlwd~~s~~~~~~~v~ 104 (136)
.+|.+..+.|+.+... .+++.+|..... ...+.++. ++++.+++.|+||. +=+||+++.+
T Consensus 13 hRf~~~~s~~~~~L~~----------~I~~Rl~~d~~~---~~~~~L~Y--lDDEgD~VllT~D~-----DL~e~v~iar 72 (86)
T cd06409 13 HRFRLRPSESLEELRT----------LISQRLGDDDFE---THLYALSY--VDDEGDIVLITSDS-----DLVAAVLVAR 72 (86)
T ss_pred EEEEecCCCCHHHHHH----------HHHHHhCCcccc---CCcccEEE--EcCCCCEEEEeccc-----hHHHHHHHHH
Confidence 3444444555554444 566666644321 12333333 35677899999996 4567777766
Q ss_pred Hh
Q psy10596 105 TH 106 (136)
Q Consensus 105 ~~ 106 (136)
..
T Consensus 73 ~~ 74 (86)
T cd06409 73 SA 74 (86)
T ss_pred Hc
Confidence 54
Done!