RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10596
(136 letters)
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 60.0 bits (146), Expect = 9e-12
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 57 GAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQS 111
G D KP V A+PDV + L +DFL+LA+DGLW+ ++ EA V + L+++
Sbjct: 172 GDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKED 226
Score = 57.7 bits (140), Expect = 5e-11
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 4 KDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQS 56
D KP V A+PDV + L +DFL+LA+DGLW+ ++ EA V + L+++
Sbjct: 174 FDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKED 226
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 55.5 bits (134), Expect = 4e-10
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 52 LSEQSGAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQ 110
LS G KPYV A+PDV ++L +DFL+LA+DGLW+ ++ E V HLS+
Sbjct: 168 LSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKD 226
Score = 52.8 bits (127), Expect = 3e-09
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 5 DFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQ 55
KPYV A+PDV ++L +DFL+LA+DGLW+ ++ E V HLS+
Sbjct: 176 FLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKD 226
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 51.2 bits (123), Expect = 1e-08
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 57 GAKDFKP----YVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQS 111
G + K V A+PDV + S++FL+LA+DGLW+ +++ E V + LS+ S
Sbjct: 173 GDFELKKGKPQPVSAEPDVTSHKITESDEFLILASDGLWDVLSDQEVVDIVRSELSDGS 231
Score = 50.4 bits (121), Expect = 2e-08
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 4 KDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQS 56
K V A+PDV + S++FL+LA+DGLW+ +++ E V + LS+ S
Sbjct: 179 KGKPQPVSAEPDVTSHKITESDEFLILASDGLWDVLSDQEVVDIVRSELSDGS 231
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 38.1 bits (89), Expect = 5e-04
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 12 ADPDVICLDLDGSEDFLLLATDGLWEKVTELEAAS 46
+PD+ L+L+ DFLLL +DGLW+ V++ E
Sbjct: 183 LEPDITELELE-PGDFLLLCSDGLWDVVSDDEIVD 216
Score = 38.1 bits (89), Expect = 5e-04
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 67 ADPDVICLDLDGSEDFLLLATDGLWEKVTELEAAS 101
+PD+ L+L+ DFLLL +DGLW+ V++ E
Sbjct: 183 LEPDITELELE-PGDFLLLCSDGLWDVVSDDEIVD 216
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional.
Length = 365
Score = 29.1 bits (65), Expect = 0.67
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1 MSAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWE 37
M D P + A+P+++ L ++FL++ DG+W+
Sbjct: 246 MKGSDGGP-LSAEPELMTTQLTEEDEFLIIGCDGIWD 281
Score = 27.2 bits (60), Expect = 3.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 67 ADPDVICLDLDGSEDFLLLATDGLWE 92
A+P+++ L ++FL++ DG+W+
Sbjct: 256 AEPELMTTQLTEEDEFLIIGCDGIWD 281
>gnl|CDD|226548 COG4062, MtrB, Tetrahydromethanopterin S-methyltransferase, subunit
B [Coenzyme metabolism].
Length = 108
Score = 27.8 bits (62), Expect = 1.0
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 63 PYVCADPDV-ICLDLD------GSEDFLLLATDGLWEKVTELEAASSVYTH-LSEQSGLL 114
YV DP++ + +D + G ED + L D + E++ +LE + L + L
Sbjct: 2 TYVFIDPEIPLVMDPETGVVAEGFEDVIFLDVDPIEEQIKKLETLVDDLENSLDPSTPPL 61
Query: 115 STLFFLDEIWSMVGI 129
++ + +++ G
Sbjct: 62 NSFPGREGVYATAGY 76
Score = 27.1 bits (60), Expect = 1.8
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 8 PYVCADPDV-ICLDLD------GSEDFLLLATDGLWEKVTELEAASSVYTH 51
YV DP++ + +D + G ED + L D + E++ +LE +
Sbjct: 2 TYVFIDPEIPLVMDPETGVVAEGFEDVIFLDVDPIEEQIKKLETLVDDLEN 52
>gnl|CDD|184412 PRK13947, PRK13947, shikimate kinase; Provisional.
Length = 171
Score = 27.7 bits (62), Expect = 1.7
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 12 ADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPY 64
A P+VI + + LL E++ EL L E+ DF Y
Sbjct: 102 ARPEVILRRVGKKKSRPLLMVGDPEERIKEL---------LKEREPFYDFADY 145
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 27.5 bits (61), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 98 EAASSVYTHLSEQSGLLSTLFFLDEIWSMVGIG 130
E V L++Q G + + F+DE+ +MVG G
Sbjct: 257 ERLKGVLNDLAKQEG--NVILFIDELHTMVGAG 287
>gnl|CDD|153343 cd07659, BAR_PICK1, The Bin/Amphiphysin/Rvs (BAR) domain of Protein
Interacting with C Kinase 1. The BAR domain of
Arfaptin-like proteins, also called the Arfaptin domain,
is a dimerization and lipid binding module that can
detect and drive membrane curvature. Protein Interacting
with C Kinase 1 (PICK1), also called Protein kinase
C-alpha-binding protein, is highly expressed in brain
and testes. PICK1 plays a key role in the trafficking of
AMPA receptors, which are critical for regulating
synaptic strength and may be important in cellular
processes involved in learning and memory. PICK1 is also
critical in the early stages of spermiogenesis. Mice
deficient in PICK1 are infertile and show
characteristics of the human disease globozoospermia
such as round-headed sperm, reduced sperm count, and
severely impaired sperm motility. PICK1 may also be
involved in the neuropathogenesis of schizophrenia.
PICK1 contains an N-terminal PDZ domain and a C-terminal
BAR domain. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
The BAR domain of PICK1 is necessary for its membrane
localization and activation.
Length = 215
Score = 26.9 bits (60), Expect = 3.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 87 TDGLWEKVTELEAASSVYTHLSEQSGLLSTLFF 119
DGL +K+ ELE + +Y L E + L F+
Sbjct: 1 NDGLVKKLEELEQTAELYKGLVEHTKRLLRAFY 33
Score = 25.4 bits (56), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 TDGLWEKVTELEAASSVYTHLSEQSGA 58
DGL +K+ ELE + +Y L E +
Sbjct: 1 NDGLVKKLEELEQTAELYKGLVEHTKR 27
>gnl|CDD|114180 pfam05440, MtrB, Tetrahydromethanopterin S-methyltransferase
subunit B. The N5-methyltetrahydromethanopterin:
coenzyme M (EC:2.1.1.86) of Methanosarcina mazei Go1 is
a membrane-associated, corrinoid-containing protein that
uses a transmethylation reaction to drive an
energy-conserving sodium ion pump.
Length = 97
Score = 26.3 bits (58), Expect = 3.4
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 63 PYVCADPDV-ICLDLD------GSEDFLLLATDGLWEKVTELEAASSVYTH-LSEQSGLL 114
V P++ + +D + ED + L+ D ++E++ +LEA + + L + L
Sbjct: 1 SIVRIAPEINLVMDPETGVVAEEREDVIFLSMDPIFEQIDKLEAIADDLENSLDPSTPPL 60
Query: 115 STLFFLDEIWSMVGI 129
++ + ++ GI
Sbjct: 61 NSWPGREGVYYTAGI 75
Score = 25.1 bits (55), Expect = 7.9
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 8 PYVCADPDV-ICLDLD------GSEDFLLLATDGLWEKVTELEAASSVYTH 51
V P++ + +D + ED + L+ D ++E++ +LEA + +
Sbjct: 1 SIVRIAPEINLVMDPETGVVAEEREDVIFLSMDPIFEQIDKLEAIADDLEN 51
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 26.7 bits (59), Expect = 4.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 57 GAKDFKPY-VCADPDVICLDLDGSEDFLLLATDGLWE 92
G D+ V A PDV L S DF++LA DG++E
Sbjct: 186 GTGDYLEQKVIAVPDVTHLTCQ-SNDFIILACDGVFE 221
Score = 26.7 bits (59), Expect = 5.0
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 10 VCADPDVICLDLDGSEDFLLLATDGLWE 37
V A PDV L S DF++LA DG++E
Sbjct: 195 VIAVPDVTHLTCQ-SNDFIILACDGVFE 221
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A
catalytic domain. This is the major form of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydrolyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group also includes sequences
that have been shown to act as an iron-responsive
element (IRE) binding protein in animals and may have
the same role in other eukaryotes.
Length = 404
Score = 26.1 bits (58), Expect = 7.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 91 WEKVTELEAASSVYTHLSEQSGLLSTLFFLDEI-WSMVGIGCS 132
+ K T L S V T E SGLL +L+++ + +VG GC+
Sbjct: 304 YVK-TSLAPGSRVVTKYLEASGLLP---YLEKLGFHVVGYGCT 342
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 25.6 bits (57), Expect = 8.4
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 73 CLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTLFFLD 121
L L G E FL++ D LW + + A + H LL L +
Sbjct: 91 ALPLLGDEPFLVVNGDILW----DGDLAPLLLLHAWRMDALLLLLPLVR 135
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases.
Length = 193
Score = 25.8 bits (57), Expect = 8.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 26 DFLLLATDGLWEKVTE 41
D LLL TDGL E
Sbjct: 150 DLLLLYTDGLTEARNP 165
Score = 25.8 bits (57), Expect = 8.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 81 DFLLLATDGLWEKVTE 96
D LLL TDGL E
Sbjct: 150 DLLLLYTDGLTEARNP 165
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 12 ADPDVICLDLDGSEDFLLLATD 33
A PD + +DLDG FL+ T+
Sbjct: 436 ARPDKVVVDLDGDGSFLMTGTN 457
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 67 ADPDVICLDLDGSEDFLLLATD 88
A PD + +DLDG FL+ T+
Sbjct: 436 ARPDKVVVDLDGDGSFLMTGTN 457
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.412
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,808,749
Number of extensions: 573525
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 41
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)