RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10596
(136 letters)
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 64.1 bits (156), Expect = 3e-13
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 57 GAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGL 113
G + KP + DP+V + +D L+LA+DG+W+ +T+ EA +
Sbjct: 198 GDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKK 254
Score = 63.7 bits (155), Expect = 3e-13
Identities = 16/77 (20%), Positives = 29/77 (37%)
Query: 4 KDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKP 63
+ KP + DP+V + +D L+LA+DG+W+ +T+ EA +
Sbjct: 200 RYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAG 259
Query: 64 YVCADPDVICLDLDGSE 80
D +
Sbjct: 260 GASLLADERRKEGKDPA 276
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 63.0 bits (153), Expect = 6e-13
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 4 KDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKP 63
+ KPYV +P+V + ++ L+LA+DGLW+ + E + P
Sbjct: 229 RYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPP 288
Query: 64 --YVCADPDVICLDL 76
D C
Sbjct: 289 LAERGKGIDPACQAA 303
Score = 62.2 bits (151), Expect = 1e-12
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 57 GAKDFKPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQ 110
G + KPYV +P+V + ++ L+LA+DGLW+ + E +
Sbjct: 227 GDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMW 280
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 59.9 bits (145), Expect = 1e-11
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 4 KDFKPY-VCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSVYTHLSEQSGAKD 60
D K V A+P+ + L ++D FL+L TDG+ V E V A
Sbjct: 296 LDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHA 354
Score = 58.0 bits (140), Expect = 4e-11
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 57 GAKDFKPY-VCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSVYTHLSEQS 111
G D K V A+P+ + L ++D FL+L TDG+ V E V
Sbjct: 294 GDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNE 350
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 58.1 bits (141), Expect = 2e-11
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 4 KDFKPY-VCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSVYTHLSEQSGAKD 60
D K V A+P+ + L ++D FL+L TDG+ V E V A
Sbjct: 182 LDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHA 240
Score = 56.6 bits (137), Expect = 1e-10
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 57 GAKDFKPY-VCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSVYTHLSEQS 111
G D K V A+P+ + L ++D FL+L TDG+ V E V
Sbjct: 180 GDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNE 236
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 54.7 bits (132), Expect = 5e-10
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 7 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVC 66
+ V +P+V + ++F++LA DG+W+ ++ E V + L
Sbjct: 219 EQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSD---------- 268
Query: 67 ADPDVICLDL 76
D + +C +
Sbjct: 269 -DLENVCNWV 277
Score = 54.3 bits (131), Expect = 8e-10
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 62 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGL 113
+ V +P+V + ++F++LA DG+W+ ++ E V + L L
Sbjct: 219 EQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDL 270
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 54.7 bits (132), Expect = 6e-10
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 7 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVC 66
+ + A PD+ + + ++F++LA DG+W +T + V +++
Sbjct: 218 EQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPG---------- 267
Query: 67 ADPDVICLDL 76
IC +L
Sbjct: 268 MKLSKICEEL 277
Score = 53.9 bits (130), Expect = 1e-09
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 62 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLSTL 117
+ + A PD+ + + ++F++LA DG+W +T + V +++ LS +
Sbjct: 218 EQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKI 273
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 53.9 bits (130), Expect = 1e-09
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 57 GAKDFKPY-VCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSE 109
G KD K Y + PDV + + ++LATDGLW+ ++ +A E
Sbjct: 234 GGKDLKMYGLSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQE 287
Score = 52.4 bits (126), Expect = 4e-09
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 4 KDFKPY-VCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGA 58
KD K Y + PDV + + ++LATDGLW+ ++ +A E
Sbjct: 236 KDLKMYGLSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQEGRNP 291
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 52.9 bits (127), Expect = 3e-09
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 7 KPYVCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYV 65
+ V +P+V ++ +D F++LA DG+W+ + E V + L
Sbjct: 212 EQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEV----------- 260
Query: 66 CADPDVICLDL 76
D + +C ++
Sbjct: 261 TDDLEKVCNEV 271
Score = 51.7 bits (124), Expect = 7e-09
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 62 KPYVCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSVYTHLSEQSGL 113
+ V +P+V ++ +D F++LA DG+W+ + E V + L L
Sbjct: 212 EQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDL 264
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 51.2 bits (122), Expect = 1e-08
Identities = 9/70 (12%), Positives = 16/70 (22%), Gaps = 11/70 (15%)
Query: 7 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVC 66
+ V A PDV D ++ T G + A ++
Sbjct: 245 QDLVSAVPDVTTFFAY-PGDDIVAGTAGAFAHFRSHAAIAAAIALYPVS----------P 293
Query: 67 ADPDVICLDL 76
+
Sbjct: 294 ETVLDAAKAM 303
Score = 50.8 bits (121), Expect = 1e-08
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 62 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGLLS 115
+ V A PDV D ++ T G + A ++ +
Sbjct: 245 QDLVSAVPDVTTFFAY-PGDDIVAGTAGAFAHFRSHAAIAAAIALYPVSPETVL 297
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 48.6 bits (115), Expect = 8e-08
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 7 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAK 59
PY+ A+P+V L + FL+LATDGLWE + + V +L+ +
Sbjct: 321 PPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQ 373
Score = 48.6 bits (115), Expect = 9e-08
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 62 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQ 110
PY+ A+P+V L + FL+LATDGLWE + + V +L+
Sbjct: 321 PPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGM 369
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 46.5 bits (110), Expect = 4e-07
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 7 KPYVCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSV 48
+ A+P++ FL+L ++GL++ +
Sbjct: 263 SKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQA 305
Score = 46.5 bits (110), Expect = 4e-07
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 62 KPYVCADPDVICLDLDGSED-FLLLATDGLWEKVTELEAASSV 103
+ A+P++ FL+L ++GL++ +
Sbjct: 263 SKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQA 305
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 42.4 bits (99), Expect = 1e-05
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 7 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKDFKPYVC 66
+ V A PDV S D LLLA DG++E A T Q
Sbjct: 252 EQKVIAVPDVRQFYAL-SSDLLLLACDGVYEPSGMDWAYVRDLTVAEMQRSKG------- 303
Query: 67 ADPDVICLDL 76
D + + +
Sbjct: 304 -DLEEVAARV 312
Score = 40.0 bits (93), Expect = 7e-05
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 62 KPYVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSVYTH 106
+ V A PDV S D LLLA DG++E A T
Sbjct: 252 EQKVIAVPDVRQFYAL-SSDLLLLACDGVYEPSGMDWAYVRDLTV 295
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 40.8 bits (95), Expect = 5e-05
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 7 KPYVCADPDVI-CLDLDGSEDFLLLATDGLWEKVTELEAASSVYTH 51
V +P+++ + + + FL+L + GL + E+ + +
Sbjct: 249 AEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFPGDASTGN 294
Score = 40.8 bits (95), Expect = 5e-05
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 62 KPYVCADPDVI-CLDLDGSEDFLLLATDGLWEKVTELEAASSVYTH 106
V +P+++ + + + FL+L + GL + E+ + +
Sbjct: 249 AEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFPGDASTGN 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.11
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 30/100 (30%)
Query: 65 VCADPDVIC--------LDL--DGSEDFLLLATDGLWEKVT-----ELEAASSVYTHLSE 109
VC V C L+L S + +L L ++ + +S++ +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 110 QSGLLSTLFF----------LDEIWS-----MVGIGCSNL 134
L L L + + + C L
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 29.9 bits (68), Expect = 0.23
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 12 ADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
+P + + + D LL +DGL + V++
Sbjct: 168 VEPTLTMREAR-AGDRYLLCSDGLSDPVSDET 198
Score = 29.9 bits (68), Expect = 0.23
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 67 ADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
+P + + + D LL +DGL + V++
Sbjct: 168 VEPTLTMREAR-AGDRYLLCSDGLSDPVSDET 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.25
Identities = 26/136 (19%), Positives = 38/136 (27%), Gaps = 41/136 (30%)
Query: 25 EDFLLLATDGLWEKVTELEAASSVYTH-------LSEQSGAKDFKPYVCADP-------- 69
D + + + L E + A V+T L S D K Y+ + P
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLSIPISCPLIGV 243
Query: 70 ------DVIC--LDLDGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQS------GLLS 115
V L E L G L A ++ S +S ++
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLK--GATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 116 TLFFLDEIWSMVGIGC 131
LFF IG
Sbjct: 302 VLFF---------IGV 308
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 29.1 bits (66), Expect = 0.31
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 13 DPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
D+ +DL+ D LLL +DGL E++T+
Sbjct: 174 QIDIQPIDLE-PGDRLLLCSDGLTEELTDDV 203
Score = 29.1 bits (66), Expect = 0.31
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 68 DPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
D+ +DL+ D LLL +DGL E++T+
Sbjct: 174 QIDIQPIDLE-PGDRLLLCSDGLTEELTDDV 203
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 29.2 bits (66), Expect = 0.37
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 13 DPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
+PD+ L+ D+L++ +DGL ++ +
Sbjct: 178 EPDLGVHLLE-EGDYLVVNSDGLTNMLSNAD 207
Score = 29.2 bits (66), Expect = 0.37
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 68 DPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
+PD+ L+ D+L++ +DGL ++ +
Sbjct: 178 EPDLGVHLLE-EGDYLVVNSDGLTNMLSNAD 207
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 28.7 bits (65), Expect = 0.41
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 7 KPYVCADPDVICLDL-DGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQ 55
+ L L G + +L+ +DG++ + E A ++ +
Sbjct: 140 ENLTEISTSEAPLPLEAG--EGVLVVSDGVYRSLHEDRIAMALSRGSDAR 187
Score = 28.7 bits (65), Expect = 0.41
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 62 KPYVCADPDVICLDL-DGSEDFLLLATDGLWEKVTELEAASSVYTHLSEQ 110
+ L L G + +L+ +DG++ + E A ++ +
Sbjct: 140 ENLTEISTSEAPLPLEAG--EGVLVVSDGVYRSLHEDRIAMALSRGSDAR 187
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 28.7 bits (65), Expect = 0.47
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 12 ADPDVICLDLDGSEDFLLLATDGLWEKVTELE 43
PDV +D D LL+++DGL+ E
Sbjct: 166 IGPDVFGIDCG-PGDRLLISSDGLFAAADEAL 196
Score = 28.7 bits (65), Expect = 0.47
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 67 ADPDVICLDLDGSEDFLLLATDGLWEKVTELE 98
PDV +D D LL+++DGL+ E
Sbjct: 166 IGPDVFGIDCG-PGDRLLISSDGLFAAADEAL 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 10/29 (34%)
Query: 37 EK--VTELEAASSVYTHLSEQSGAKDFKP 63
EK + +L+A+ +Y A D P
Sbjct: 18 EKQALKKLQASLKLY--------ADDSAP 38
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein
structure initiative, MI center for structural
genomics, MCSG, flagellum; 2.50A {Bordetella
bronchiseptica}
Length = 126
Score = 26.8 bits (59), Expect = 1.7
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 21 LDGSEDFLLLATDGLWEKVTELEAA 45
+ + L A W+ V
Sbjct: 28 ANLTSRMLAAANASNWDLVLNHGQE 52
Score = 26.8 bits (59), Expect = 1.7
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 76 LDGSEDFLLLATDGLWEKVTELEAA 100
+ + L A W+ V
Sbjct: 28 ANLTSRMLAAANASNWDLVLNHGQE 52
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum
biogenesis, chaper cytoplasm, repressor, transcription;
3.20A {Salmonella typhimurium}
Length = 122
Score = 26.1 bits (57), Expect = 2.4
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 21 LDGSEDFLLLATDGLWEKVTELEAASSVYTH 51
S+ L LA G W+ + + E +
Sbjct: 15 ALLSQSLLELAQRGEWDLLLQQEVSYLQSIE 45
Score = 26.1 bits (57), Expect = 2.4
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 76 LDGSEDFLLLATDGLWEKVTELEAASSVYTH 106
S+ L LA G W+ + + E +
Sbjct: 15 ALLSQSLLELAQRGEWDLLLQQEVSYLQSIE 45
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein
structure initiative, MC midwest center for structural
genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica
subsp}
Length = 123
Score = 26.1 bits (57), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 21 LDGSEDFLLLATDGLWEKVTELEAA 45
L SE L+LAT+G W+ + +LE
Sbjct: 18 LTLSEQMLVLATEGNWDALVDLEMT 42
Score = 26.1 bits (57), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 76 LDGSEDFLLLATDGLWEKVTELEAA 100
L SE L+LAT+G W+ + +LE
Sbjct: 18 LTLSEQMLVLATEGNWDALVDLEMT 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.412
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,120,644
Number of extensions: 111650
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 51
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)