RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10596
         (136 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 7   KPYVCADPDVICLDLD-GSEDFLLLATDGLWEKVTELEAASSVYTHLSEQSGAKD 60
           +  V  +P+V  ++     + F++LA DG+W+ +   E    V + L      + 
Sbjct: 211 EQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEK 265



 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 51  HLSEQSGAKDFKPYVCADPDVICLDLD-GSEDFLLLATDGLWEKVTELEAASSVYTHLSE 109
                 G    +  V  +P+V  ++     + F++LA DG+W+ +   E    V + L  
Sbjct: 200 DYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEV 259

Query: 110 QSGL 113
              L
Sbjct: 260 TDDL 263


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 28.3 bits (62), Expect = 0.25
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 9   YVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSV 48
               +P +   +   + D  LL +DGL + V++     ++
Sbjct: 163 GHEVEPTLTMREAR-AGDRYLLCSDGLSDPVSDETILEAL 201



 Score = 28.3 bits (62), Expect = 0.25
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 64  YVCADPDVICLDLDGSEDFLLLATDGLWEKVTELEAASSV 103
               +P +   +   + D  LL +DGL + V++     ++
Sbjct: 163 GHEVEPTLTMREAR-AGDRYLLCSDGLSDPVSDETILEAL 201


>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266
          {Thermotoga maritima [TaxId: 2336]}
          Length = 80

 Score = 23.0 bits (50), Expect = 7.1
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 8  PYVCADPDVICLDLDGSED 26
          P    +  +I L L    D
Sbjct: 39 PVREENMAIIFLVLKTDND 57



 Score = 23.0 bits (50), Expect = 7.1
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 63 PYVCADPDVICLDLDGSED 81
          P    +  +I L L    D
Sbjct: 39 PVREENMAIIFLVLKTDND 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 514,283
Number of extensions: 20373
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 10
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)