BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10598
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 16 PGCHGYNILVFGVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFA 75
P G N ++ P + + HPK R FITHGG + +E+IYH +P V +PLFA
Sbjct: 63 PDTLGLNTRLYKWIP------QNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFA 116
Query: 76 DQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKYVGN 119
DQ N + G + VDF+ +L + +V+ +P Y N
Sbjct: 117 DQPDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKEN 160
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 45 KCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR 104
K FITH G+ S E++ +AVPMV VP A+Q N ++ E G G + D E+LR
Sbjct: 321 KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLR 380
Query: 105 RKVHQVLYEP 114
V V +P
Sbjct: 381 EAVLAVASDP 390
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 27 GVFPFTSHFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ 82
GV + R ++P P C + HGG S + H VP VI+P D Q
Sbjct: 313 GVANIPDNVRTVGFVPMHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQ 372
Query: 83 KAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKY 116
+ +E G G+ + ++LR V +VL +P +
Sbjct: 373 RTQEFGAGIALPVPELTPDQLRESVKRVLDDPAH 406
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFD 99
+ H F+TH G +S +ES+ VP++ P F DQ+ NG+ E+ G+ ++ VF
Sbjct: 339 LAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFT 398
Query: 100 YEELRRKVHQVLYEPK 115
L Q+L + K
Sbjct: 399 KSGLMSCFDQILSQEK 414
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ-KAEEEGYGLMVDFDVFDYE 101
HP F+TH G +S ESI VPM+ P FADQ + + E G+ +D +V E
Sbjct: 369 HPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNV-KRE 427
Query: 102 ELRRKVHQVL 111
EL + +++V+
Sbjct: 428 ELAKLINEVI 437
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE---GYGLMVDF----DVFDYE 101
F++H G +S ES++ VP++ P++A+Q+ N + +E G GL VD+ DV E
Sbjct: 354 FVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAE 413
Query: 102 ELRRKVHQVL 111
E+ + + ++
Sbjct: 414 EIEKGLKDLM 423
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 87
+ HP F+TH G +S ES+ +P++ PL+A+QK N E+
Sbjct: 353 LAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE---GYGLMVDF----DVFDYE 101
F++H G +S ES++ VP++ P++A+Q+ N + +E G GL VD+ DV E
Sbjct: 354 FVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAE 413
Query: 102 ELRRKVHQVL 111
E+ + + ++
Sbjct: 414 EIEKGLKDLM 423
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE---EEGYGLMVDFDV 97
+ H +F+TH G +S E I VPM+ P F DQ N E E G G VD V
Sbjct: 341 LKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG--VDNGV 398
Query: 98 FDYEELRRKVHQVLYEPK 115
E +++ + + K
Sbjct: 399 LTKESIKKALELTMSSEK 416
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 23 ILVFGVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ 82
+L G FP ++ P C + + HGG + + VP V VP+ A+ + +
Sbjct: 285 VLAAGQFPLSA--------IXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 336
Query: 83 KAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKYVGN 119
G G+ V ++ E + ++ + YVGN
Sbjct: 337 LLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGN 373
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 23 ILVFGVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ 82
+L G FP ++ P C + + HGG + + VP V VP+ A+ + +
Sbjct: 286 VLAAGQFPLSA--------IXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 337
Query: 83 KAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKYVGN 119
G G+ V ++ E + ++ + YVGN
Sbjct: 338 LLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGN 374
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 40 YIPHPK----CRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYG 90
++PH K + +THGG + E++Y P+V+VP D + ++ ++ G G
Sbjct: 304 WVPHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 40 YIPHPK----CRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYG 90
++PH K + +THGG + E++Y P+V+VP D + ++ ++ G G
Sbjct: 304 WVPHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.0 bits (71), Expect = 0.098, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 48 LFITHGGVHSAFESIYHAVPMVIVPLFADQKQNG 81
LF+TH G + E + A PM+ VP DQ N
Sbjct: 302 LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 47 RLFITHGGVHSAFESIYHAVPMVIVPLFADQKQ-NGQKAEEEGYGLMVDFDVFDYEELRR 105
R +THG + E+ VP+V+VP FA + + ++ E G G ++ D + +R
Sbjct: 299 RACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIRE 358
Query: 106 KVHQV 110
V ++
Sbjct: 359 AVERL 363
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 46 CRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 91
C L I GG +AF + +P +++P + DQ + G G+
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGI 332
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 46 CRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 91
C L I GG +AF + +P +++P + DQ + G G+
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGI 332
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 50 ITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 103
I HGG + + P +++P ADQ + E G G+ D + ++ L
Sbjct: 306 IHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSL 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.145 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,647,614
Number of Sequences: 62578
Number of extensions: 142184
Number of successful extensions: 325
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 21
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)