RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10598
(119 letters)
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 77.8 bits (192), Expect = 4e-18
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 34 HFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGY 89
+ R ++PH P+C + HGG + ++ VP ++VP F DQ + E G
Sbjct: 289 NVRVVDFVPHDWLLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGA 348
Query: 90 GLMVDFDVFDYEELRRKVHQVLYEP 114
G +D E L + ++L P
Sbjct: 349 GPALDPRELTAERLAAALRRLLDPP 373
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 71.7 bits (176), Expect = 7e-16
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 102
HPK R F+TH G + +E+I H VPMV +PLF DQ N + E +G + ++ E+
Sbjct: 339 HPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSED 398
Query: 103 LRRKVHQVLYEPKYVGN 119
L + V+ +P Y N
Sbjct: 399 LLNALKTVINDPSYKEN 415
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 70.5 bits (173), Expect = 2e-15
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 29 FPFTSHFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKA 84
+ Y+P P+ I HGG + E++Y VP+V++P ADQ N ++
Sbjct: 280 VNVPDNVIVADYVPQLELLPRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV 339
Query: 85 EEEGYGLMVDFDVFDYEELRRKVHQVLYEPKY 116
EE G G+ + F+ E LR V++VL + Y
Sbjct: 340 EELGAGIALPFEELTEERLRAAVNEVLADDSY 371
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 69.3 bits (170), Expect = 4e-15
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 40 YIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 95
++P K FITHGG++S E++++ VPMV VP ADQ ++ E G G +
Sbjct: 282 WVPQLEILKKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPP 341
Query: 96 DVFDYEELRRKVHQVLYEPKY 116
+ E+LR V VL +P+Y
Sbjct: 342 EEVTAEKLREAVLAVLSDPRY 362
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 58.8 bits (143), Expect = 2e-11
Identities = 28/77 (36%), Positives = 37/77 (48%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 102
H + F+T GGV S E+I VPMV +P+ DQ N K E G G +D +
Sbjct: 362 HKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQ 421
Query: 103 LRRKVHQVLYEPKYVGN 119
L + V+ PKY N
Sbjct: 422 LVLAIVDVIENPKYRKN 438
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 45.4 bits (108), Expect = 1e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQN 80
H F+TH G +S ES++H VPM PL+A+Q N
Sbjct: 355 HAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 44.8 bits (106), Expect = 2e-06
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVD 94
F+TH G +S ES++ VPM PL+A+QK N + EE GL V+
Sbjct: 364 FVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEE-LGLAVE 408
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 43.5 bits (103), Expect = 5e-06
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 87
H F TH G +S E+++ VPM+ PLF DQ N + E+
Sbjct: 339 HSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVED 383
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 40.0 bits (93), Expect = 8e-05
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 87
F+TH G S ES+ VPM+ PLFA+Q N +E
Sbjct: 360 FLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDE 398
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 38.1 bits (88), Expect = 4e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE 86
H F+TH G S+ ES+ VP+V P+++DQ N + EE
Sbjct: 343 HRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEE 386
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 37.5 bits (87), Expect = 5e-04
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 77
HP F+TH G +S E I VPM+ PLFA+Q
Sbjct: 360 HPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQ 394
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 37.7 bits (87), Expect = 6e-04
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV--- 97
+ HP F++H G S +ES+ +V+VP DQ N + +E L V +V
Sbjct: 331 LSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE---LKVSVEVARE 387
Query: 98 ----FDYEELRRKVHQVLYEPKYVGN 119
F E LR ++ V+ +GN
Sbjct: 388 ETGWFSKESLRDAINSVMKRDSEIGN 413
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 37.3 bits (86), Expect = 7e-04
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE 85
+ HP F +H G +S ESI VPM+ P +DQK N + E
Sbjct: 338 LSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLE 382
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 37.0 bits (85), Expect = 0.001
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 87
F++H G S ES+ VP+V PL+A+Q N EE
Sbjct: 357 FLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE 395
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 48 LFITHGGVHSAFESIYHAVPMVIVPL----FADQKQNGQKAEEEGYGLMVDFDVFDYEEL 103
L I+ G + E + P ++VP Q N + + G L++ E+L
Sbjct: 75 LVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKL 134
Query: 104 RRKVHQVLYEPKY 116
+ ++L +P
Sbjct: 135 VEALLKLLLKPLR 147
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 35.7 bits (83), Expect = 0.002
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 46 CRLFITHGGVHSAFESIYHAVPMVIVPLFA--DQKQNGQKAEEEGYGLMVDFDVFDYEEL 103
C I + G E++Y P+++VPL +Q N E GYG+++D + D L
Sbjct: 250 CSAVICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
Query: 104 RR 105
RR
Sbjct: 310 RR 311
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQN 80
F+TH G +S E++ VPMV PL+A+Q+ N
Sbjct: 356 FVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 34.8 bits (80), Expect = 0.005
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 77
H F+TH G +S E + VPM+ P+ ADQ
Sbjct: 359 HRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQ 393
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 34.2 bits (78), Expect = 0.008
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ 82
F+TH G +S E + VPMV +P + DQ N +
Sbjct: 339 FMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK 372
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 34.2 bits (79), Expect = 0.008
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 48 LFITHGGVHSAFESIYHAVPMVIVPL----FADQKQNGQKAEEEGYGLMVDFDVFDYEEL 103
L I+ G + E + VP ++VP Q+ N + E+ G L++ E+L
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 104 RRKVHQVLYEP 114
+ ++L P
Sbjct: 315 AELILRLLSNP 325
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 34.2 bits (78), Expect = 0.010
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNG 81
F++H G +S ES++ VP+V P++A+Q+ N
Sbjct: 354 FVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNA 386
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 33.1 bits (75), Expect = 0.023
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ-KAEEEGYGLMVDFDVFD 99
+ H F+TH G +S E++ VP+V P + DQ + + + G G+ + D D
Sbjct: 338 LSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVD 397
Query: 100 ----YEELRRKVHQVLYEPKYVG 118
EE+ R + V P
Sbjct: 398 GELKVEEVERCIEAVTEGPAAAD 420
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 32.8 bits (75), Expect = 0.027
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 77
HP F+TH G +S E++ VP+V P + DQ
Sbjct: 353 HPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQ 387
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 32.7 bits (74), Expect = 0.028
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV--- 97
+ HP F+ H G S +ES+ +V +P ADQ + EE L V V
Sbjct: 326 LSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE---LEVSVKVQRE 382
Query: 98 ----FDYEELRRKVHQVLYEPKYVGN 119
F E LR V V+ + +GN
Sbjct: 383 DSGWFSKESLRDTVKSVMDKDSEIGN 408
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 32.5 bits (74), Expect = 0.030
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNG-QKAEEEGYGLMVDFD-VFDYEEL 103
F++H G +S ES++ VP+ P++A+Q+ N +E G + + D V Y E+
Sbjct: 362 FVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEI 418
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 31.0 bits (70), Expect = 0.11
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 46 CRLFITHGGVHSAFESIYHAVPMVIVPLFA--DQKQNGQKAEEEGYGLMVDFDVFDYEEL 103
L ITHGG E++ P++++P +Q N K E+ G G+ +++ E
Sbjct: 248 AELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELRLLEA 307
Query: 104 ---RRKVHQVLYE 113
R + +
Sbjct: 308 ILDIRNMKRYKRN 320
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 31.0 bits (70), Expect = 0.12
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQN 80
F+TH G +S E + +PMV P+ A+Q N
Sbjct: 367 FVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYN 398
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 30.5 bits (70), Expect = 0.15
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 59 FESIYHAVPMVIVPL-FA---DQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 114
E +P +++PL +A Q N + + G +++ + E L + ++L +P
Sbjct: 266 AELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325
Query: 115 KY 116
+
Sbjct: 326 ER 327
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational
modification, protein turnover, chaperones].
Length = 578
Score = 29.9 bits (67), Expect = 0.29
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 30 PFTSHFRKCYYIPHPKCRLFITHGGVHS 57
P H HPK L+I ++S
Sbjct: 117 PTPKHMYFVSDHNHPKFSLYIQQEVIYS 144
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 29.3 bits (67), Expect = 0.39
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 65 AVPMVIVPL-FA---DQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPK 115
+P ++VPL A Q N + + G L++ E+L K+ ++L +P+
Sbjct: 272 GLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPE 326
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 29.2 bits (65), Expect = 0.49
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 41 IPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 77
+ HP F+ H G + +ES+ MV++P +DQ
Sbjct: 325 LDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQ 361
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 28.9 bits (65), Expect = 0.65
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVP 72
P+C++ I G + M++VP
Sbjct: 169 DPRCKIAIVMGRTDPDGAPRHRQQSMILVP 198
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 28.8 bits (65), Expect = 0.67
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 48 LFITHGGVHSAFESIYHAVPMVIVPL-FA--DQKQNGQKAEEEGYGLMVDFDVFDYEELR 104
L I+ G + E VP +++P +A DQ N + E+ G GL++ E+L
Sbjct: 253 LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLL 312
Query: 105 RKVHQVLYEPK 115
+ ++L +P
Sbjct: 313 EALLKLLLDPA 323
>gnl|CDD|118105 pfam09569, RE_ScaI, ScaI restriction endonuclease. This family
includes the ScaI (recognises and cleaves AGT^ACT)
restriction endonuclease.
Length = 191
Score = 27.1 bits (60), Expect = 2.3
Identities = 9/39 (23%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 74 FADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLY 112
+ + +G+K+++ GY L ++F+ F ++L K+ ++ +
Sbjct: 120 YGYRPDDGKKSKD-GYYLAINFEKFKEDDLEPKIWKIRF 157
>gnl|CDD|171505 PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase; Reviewed.
Length = 352
Score = 26.4 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 50 ITHGGVHSAFESIYHAVPMVIVPL--FA---DQKQNGQKAEEEGY 89
I+ G ++ FE + PM+++PL FA DQ N + E +GY
Sbjct: 257 ISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGY 301
>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional.
Length = 237
Score = 25.4 bits (56), Expect = 8.8
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 71 VPLFADQKQNGQKAEEE----GYGLMVDFDVFDYEELRRKVHQVLYE 113
V + A ++ ++A E G L + DV D +++R V ++
Sbjct: 33 VAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA 79
>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated.
Length = 390
Score = 25.5 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 92 MVDFDVFDYEELRRKVHQVLYEPKYVG 118
+VDFDV D L+R QV++ +VG
Sbjct: 67 IVDFDVVDSSNLQR---QVIHGTSWVG 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.146 0.467
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,406,831
Number of extensions: 562356
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 54
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)