RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10598
(119 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 108 bits (273), Expect = 1e-31
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 43 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 102
HPK R FITHGG + +E+IYH +PMV +PLFADQ N + G + VDF+ +
Sbjct: 84 HPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTD 143
Query: 103 LRRKVHQVLYEPKY 116
L + +V+ +P Y
Sbjct: 144 LLNALKRVINDPSY 157
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 97.2 bits (242), Expect = 3e-25
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 33 SHFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEG 88
+ ++P + LF+TH G + E + A PM+ VP DQ N + G
Sbjct: 283 DNVEVHDWVPQLAILRQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLG 342
Query: 89 YGLMVDFDVFDYEELRRKVHQVLYEPKY 116
+ + + LR ++ +P+
Sbjct: 343 VARKLATEEATADLLRETALALVDDPEV 370
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 93.3 bits (232), Expect = 7e-24
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 33 SHFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEG 88
+ ++P K FITH G+ S E++ +AVPMV VP A+Q N ++ E G
Sbjct: 305 PNVEVHQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELG 364
Query: 89 YGLMVDFDVFDYEELRRKVHQVLYEPKY 116
G + D E+LR V V +P
Sbjct: 365 LGRHIPRDQVTAEKLREAVLAVASDPGV 392
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 88.6 bits (220), Expect = 3e-22
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 33 SHFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEG 88
+ ++PH + + +THGG+ + E++Y P+V+VP D + ++ ++ G
Sbjct: 297 PNVEAHRWVPHVKVLEQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLG 356
Query: 89 YGLMVDFDVFDYEELRRKVHQVLYEPKY 116
G ++ + D + L V V +P
Sbjct: 357 LGAVLPGEKADGDTLLAAVGAVAADPAL 384
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 87.5 bits (217), Expect = 7e-22
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 33 SHFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFA-DQKQNGQKAEEE 87
+ +IP R +THG + E+ VP+V+VP FA + + ++ E
Sbjct: 281 PNVEAHQWIPFHSVLAHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIEL 340
Query: 88 GYGLMVDFDVFDYEELRRKVHQVLYEPKY 116
G G ++ D + +R V ++ +
Sbjct: 341 GLGSVLRPDQLEPASIREAVERLAADSAV 369
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 84.0 bits (208), Expect = 1e-20
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 33 SHFRKCYYIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEG 88
++ R ++P P L + HGG + ++ VP + P D N Q + G
Sbjct: 292 ANVRLESWVPQAALLPHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAG 351
Query: 89 YGLMVDFDVFDYEELRRKVHQVLYEPKY 116
G + D + + ++L E Y
Sbjct: 352 AGDHLLPDNISPDSVSGAAKRLLAEESY 379
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 82.2 bits (203), Expect = 7e-20
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 40 YIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 95
++P P C + HGG S + H VP VI+P D Q+ +E G G+ +
Sbjct: 326 FVPMHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPV 385
Query: 96 DVFDYEELRRKVHQVLYEPKY 116
++LR V +VL +P +
Sbjct: 386 PELTPDQLRESVKRVLDDPAH 406
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 80.5 bits (199), Expect = 3e-19
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 40 YIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 95
P P C + + HGG + + VP V VP+ A+ + + G G+ V +
Sbjct: 291 QFPLSAIMPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPW 350
Query: 96 DVFDYEELRRKVHQVLYEPKY 116
+ E + ++ + Y
Sbjct: 351 EQAGVESVLAACARIRDDSSY 371
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 78.7 bits (194), Expect = 1e-18
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 40 YIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 95
+ P P C L + H G S + VP +++P + + ++ + G + +
Sbjct: 270 WTPLDVVAPTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLP 329
Query: 96 DVFDYEELRRKVHQVLYEPKY 116
E + ++ + Y
Sbjct: 330 GEDSTEAIADSCQELQAKDTY 350
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 76.0 bits (187), Expect = 1e-17
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 40 YIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 95
+P C L I GG +AF + +P +++P + DQ + G G+ +
Sbjct: 277 SVPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPD 336
Query: 96 DVF--DYEELRRKVHQVLYEPKY 116
+ D+E+ + VL + +
Sbjct: 337 EQAQSDHEQFTDSIATVLGDTGF 359
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 69.1 bits (169), Expect = 3e-15
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 40 YIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 95
+ H + + HGG + P V+VP ADQ + + G G+ D
Sbjct: 275 EVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDG 334
Query: 96 DVFDYEELRRKVHQVLYEPKY 116
E L + L P
Sbjct: 335 PTPTVESLSAALATAL-TPGI 354
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 67.9 bits (166), Expect = 8e-15
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 40 YIPH----PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 95
+ P C + HGG + +I +P ++ P DQ Q+ + G+ +
Sbjct: 290 WTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVS 349
Query: 96 DVFDYEELRRKVHQVLYEPKY 116
+ + +++ +
Sbjct: 350 T--SDKVDADLLRRLIGDESL 368
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 68.0 bits (166), Expect = 9e-15
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 22 NILVFGVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNG 81
+ G F + I HGG + + P +++P ADQ
Sbjct: 286 DCFAIGEVNHQVLF--------GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYA 337
Query: 82 QKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKY 116
+ E G G+ D + ++ L + L P+
Sbjct: 338 GRVAELGVGVAHDGPIPTFDSLSAALATAL-TPET 371
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 67.6 bits (165), Expect = 1e-14
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 22 NILVFGVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNG 81
+ F + F + I HG + + VP +++P DQ
Sbjct: 287 DCFAIDEVNFQALF--------RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFA 338
Query: 82 QKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKY 116
+ G G+ D +E L + VL P+
Sbjct: 339 GRVAALGIGVAHDGPTPTFESLSAALTTVL-APET 372
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 54.9 bits (133), Expect = 3e-10
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDYEELRRKV 107
F+TH G +S +ES+ VP++ P F DQ+ NG+ E+ G+ ++ VF L
Sbjct: 347 FVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCF 406
Query: 108 HQVL 111
Q+L
Sbjct: 407 DQIL 410
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 52.6 bits (127), Expect = 2e-09
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDYEELRRKV 107
F+TH G +S E I VPM+ P F DQ N E G+ VD V E +++ +
Sbjct: 349 FLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKAL 408
Query: 108 HQVL 111
+
Sbjct: 409 ELTM 412
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 51.5 bits (124), Expect = 5e-09
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDYEELRRKV 107
F+TH G +S ESI VPM+ P FADQ + + E G+ +D +V EEL + +
Sbjct: 375 FLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNV-KREELAKLI 433
Query: 108 HQVLYEPK 115
++V+ K
Sbjct: 434 NEVIAGDK 441
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 44.5 bits (106), Expect = 1e-06
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDY------E 101
F++H G +S ES++ VP++ P++A+Q+ N + +E G GL + D E
Sbjct: 354 FVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAE 413
Query: 102 ELRRKVHQV 110
E+ + + +
Sbjct: 414 EIEKGLKDL 422
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 49 FITHGGVHSAFESIYHAVPMVIVPLFADQKQN 80
F+TH G +S ES+ +P++ PL+A+QK N
Sbjct: 361 FLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 36.3 bits (83), Expect = 0.001
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 21 YNILVFGVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFA----D 76
L F F++ + L I+H G S +S+ P+++ +
Sbjct: 111 NGKLKVIGFDFSTKMQSIIR---DYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNH 167
Query: 77 QKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 114
Q+Q K E GY R +P
Sbjct: 168 QQQIADKFVELGYVWSCAPTETGLIAGLRASQTEKLKP 205
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 31.6 bits (70), Expect = 0.038
Identities = 5/58 (8%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 34 HFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 91
+ + I E++ + +Q+ ++GY +
Sbjct: 214 IDHENIAKLMNESNKLIISASS-LVNEALLLKANFKAICYVKNQESTATWLAKKGYEV 270
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus
stearothermophilus} SCOP: d.142.2.2
Length = 318
Score = 26.7 bits (60), Expect = 1.9
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 26/68 (38%)
Query: 53 GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR---RKVHQ 109
G AF + H VPM + + + F +LR R+V Q
Sbjct: 66 GPPLEAFRKVAHRVPM----------------------MSLA-NAFGEGDLRDFDRRVRQ 102
Query: 110 VLYEPKYV 117
+ E YV
Sbjct: 103 EVGEAAYV 110
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA
replication, magnesium, manganese, metal-binding, NAD,
zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB:
3jsn_A*
Length = 318
Score = 26.3 bits (59), Expect = 2.5
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 26/68 (38%)
Query: 53 GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR---RKVHQ 109
G ++F + H PM L + + F+ ++LR +++ +
Sbjct: 64 GEAQASFNKVNHDTPM----------------------LSLG-NAFNEDDLRKFDQRIRE 100
Query: 110 VLYEPKYV 117
+ +Y+
Sbjct: 101 QIGNVEYM 108
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase;
HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP:
b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A*
Length = 535
Score = 26.0 bits (57), Expect = 3.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 87 EGYGLMVDFDVFDYEEL 103
G DFD F Y+EL
Sbjct: 519 SGQNNYADFDYFLYKEL 535
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A
{Humicola insolens} PDB: 3zxj_A* 3zxl_A*
Length = 542
Score = 26.1 bits (57), Expect = 3.6
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 87 EGYGLMVDFDVFDYEELRRKVH 108
+ G V F + H
Sbjct: 518 KSLGGEVKVKGFKMNMILEHHH 539
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 24.9 bits (55), Expect = 5.7
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 10/38 (26%)
Query: 27 GVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYH 64
G F + F + Y P R F++ ++H
Sbjct: 51 GTFKLSLQFSEDYPNKPPTVR-FVS---------RMFH 78
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase
catalytic domain fold, oxidoreductase; HET: HBI; 1.71A
{Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A*
3hfb_A* 3e2t_A*
Length = 301
Score = 25.4 bits (55), Expect = 5.8
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 19/88 (21%)
Query: 21 YNILVFGVFP---FTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 77
+ L F VF + H +Y P P + VP++ P FA
Sbjct: 141 LSGLAFRVFHCTQYVRHSSDPFYTPEPDT------------CHELLGHVPLLAEPSFAQF 188
Query: 78 KQN----GQKAEEEGYGLMVDFDVFDYE 101
Q A EE + F E
Sbjct: 189 SQEIGLASLGASEEAVQKLATCYFFTVE 216
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 24.9 bits (55), Expect = 6.1
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 27 GVFPFTSHFRKCYYIPHPKCRLFITHGGVHSAFESIYHAVPMV 69
GV+P T + Y PK + F YH P V
Sbjct: 56 GVYPITVEYPNEYPSKPPKVK-FPA---------GFYH--PNV 86
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 25.2 bits (56), Expect = 6.9
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 53 GGVHSAFESIYHAVPM 68
+AF I H VPM
Sbjct: 64 AAPLAAFSQIRHEVPM 79
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold,
adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus
influenzae} PDB: 3pn1_A* 3bac_A*
Length = 322
Score = 24.7 bits (55), Expect = 7.9
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 53 GGVHSAFESIYHAVPM 68
S F I H +PM
Sbjct: 62 AKPLSGFSQIRHEIPM 77
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 24.8 bits (53), Expect = 8.4
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 74 FADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKY 116
+Q +N +K G G D+E LRR++ E +
Sbjct: 31 AKEQIENYKKQTRNGLGK-------DHEILRRRIENGAKELWF 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.146 0.467
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,964,970
Number of extensions: 109143
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 47
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.5 bits)