BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10599
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYE 94
HPK R FITHGG + +E+IYH +P V +PLFADQ N + G + VDF+
Sbjct: 83 GHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSST 142
Query: 95 ELRRKVHQVLYEPKYVGN 112
+L + +V+ +P Y N
Sbjct: 143 DLLNALKRVINDPSYKEN 160
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 38 KCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR 97
K FITH G+ S E++ +AVPMV VP A+Q N ++ E G G + D E+LR
Sbjct: 321 KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLR 380
Query: 98 RKVHQVLYEP 107
V V +P
Sbjct: 381 EAVLAVASDP 390
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDY 93
AH F+TH G +S +ES+ VP++ P F DQ+ NG+ E+ G+ ++ VF
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTK 399
Query: 94 EELRRKVHQVLYEPK 108
L Q+L + K
Sbjct: 400 SGLMSCFDQILSQEK 414
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
P C + HGG S + H VP VI+P D Q+ +E G G+ + ++L
Sbjct: 334 PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQL 393
Query: 97 RRKVHQVLYEPKY 109
R V +VL +P +
Sbjct: 394 RESVKRVLDDPAH 406
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 42.7 bits (99), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 80
AHP F+TH G +S ES+ +P++ PL+A+QK N E+
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE---GYGLMVDF--- 88
AH F++H G +S ES++ VP++ P++A+Q+ N + +E G GL VD+
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406
Query: 89 -DVFDYEELRRKVHQVL 104
DV EE+ + + ++
Sbjct: 407 SDVVAAEEIEKGLKDLM 423
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE---GYGLMVDF--- 88
AH F++H G +S ES++ VP++ P++A+Q+ N + +E G GL VD+
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406
Query: 89 -DVFDYEELRRKVHQVL 104
DV EE+ + + ++
Sbjct: 407 SDVVAAEEIEKGLKDLM 423
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ-KAEEEGYGLMVDFDVFDYE 94
HP F+TH G +S ESI VPM+ P FADQ + + E G+ +D +V E
Sbjct: 369 HPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNV-KRE 427
Query: 95 ELRRKVHQVL 104
EL + +++V+
Sbjct: 428 ELAKLINEVI 437
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE---EEGYGLMVDFDVFD 92
H +F+TH G +S E I VPM+ P F DQ N E E G G VD V
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG--VDNGVLT 400
Query: 93 YEELRRKVHQVLYEPK 108
E +++ + + K
Sbjct: 401 KESIKKALELTMSSEK 416
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 33 SSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92
S+ P C + + HGG + + VP V VP+ A+ + + G G+ V ++
Sbjct: 294 SAIXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAG 353
Query: 93 YEELRRKVHQVLYEPKYVGN 112
E + ++ + YVGN
Sbjct: 354 VESVLAACARIRDDSSYVGN 373
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 33 SSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92
S+ P C + + HGG + + VP V VP+ A+ + + G G+ V ++
Sbjct: 295 SAIXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAG 354
Query: 93 YEELRRKVHQVLYEPKYVGN 112
E + ++ + YVGN
Sbjct: 355 VESVLAACARIRDDSSYVGN 374
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 43 ITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYG 83
+THGG + E++Y P+V+VP D + ++ ++ G G
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 43 ITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYG 83
+THGG + E++Y P+V+VP D + ++ ++ G G
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.0 bits (71), Expect = 0.098, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 41 LFITHGGVHSAFESIYHAVPMVIVPLFADQKQNG 74
LF+TH G + E + A PM+ VP DQ N
Sbjct: 302 LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 40 RLFITHGGVHSAFESIYHAVPMVIVPLFADQKQ-NGQKAEEEGYGLMVDFDVFDYEELRR 98
R +THG + E+ VP+V+VP FA + + ++ E G G ++ D + +R
Sbjct: 299 RACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIRE 358
Query: 99 KVHQV 103
V ++
Sbjct: 359 AVERL 363
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 39 CRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 84
C L I GG +AF + +P +++P + DQ + G G+
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGI 332
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 39 CRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 84
C L I GG +AF + +P +++P + DQ + G G+
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGI 332
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 43 ITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
I HGG + + P +++P ADQ + E G G+ D + ++ L
Sbjct: 306 IHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSL 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,549,377
Number of Sequences: 62578
Number of extensions: 132633
Number of successful extensions: 346
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 24
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)