Query psy10599
Match_columns 112
No_of_seqs 147 out of 1072
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 22:28:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 99.9 5.5E-28 1.2E-32 180.6 7.5 96 17-112 320-415 (500)
2 PHA03392 egt ecdysteroid UDP-g 99.9 4.7E-27 1E-31 176.5 9.1 96 17-112 343-438 (507)
3 PLN02208 glycosyltransferase f 99.9 8.7E-24 1.9E-28 156.6 9.4 89 20-108 311-403 (442)
4 PLN03004 UDP-glycosyltransfera 99.9 7.7E-24 1.7E-28 157.2 8.9 93 20-112 334-430 (451)
5 PLN02554 UDP-glycosyltransfera 99.9 2.6E-24 5.6E-29 160.9 6.3 95 18-112 340-447 (481)
6 PLN02670 transferase, transfer 99.9 9.6E-24 2.1E-28 157.3 9.2 92 21-112 340-438 (472)
7 COG1819 Glycosyl transferases, 99.9 1.1E-23 2.4E-28 154.8 8.5 95 15-111 279-373 (406)
8 PLN02562 UDP-glycosyltransfera 99.9 1.3E-23 2.8E-28 156.0 7.8 93 18-112 326-419 (448)
9 PLN02410 UDP-glucoronosyl/UDP- 99.9 2.6E-23 5.7E-28 154.4 8.9 90 17-107 321-411 (451)
10 PLN02207 UDP-glycosyltransfera 99.9 3.7E-23 8E-28 154.1 7.4 95 18-112 330-434 (468)
11 PLN02173 UDP-glucosyl transfer 99.9 1.6E-22 3.5E-27 150.0 9.9 91 19-109 316-411 (449)
12 PLN02210 UDP-glucosyl transfer 99.9 1E-22 2.2E-27 151.5 8.5 89 20-108 324-417 (456)
13 PLN00414 glycosyltransferase f 99.9 1.9E-22 4.2E-27 149.7 10.0 88 21-108 313-404 (446)
14 PLN02764 glycosyltransferase f 99.9 1.9E-22 4E-27 149.7 9.7 88 20-107 317-408 (453)
15 PLN02167 UDP-glycosyltransfera 99.9 8.8E-23 1.9E-27 152.5 7.5 92 20-111 340-440 (475)
16 PLN03007 UDP-glucosyltransfera 99.9 1.3E-22 2.8E-27 151.8 8.3 93 19-111 344-448 (482)
17 PLN02992 coniferyl-alcohol glu 99.9 4.5E-22 9.8E-27 148.6 10.5 88 20-107 338-428 (481)
18 PLN02555 limonoid glucosyltran 99.9 3.7E-22 8E-27 149.2 9.9 91 17-107 334-430 (480)
19 PLN02863 UDP-glucoronosyl/UDP- 99.9 2.5E-22 5.5E-27 150.1 8.8 94 19-112 342-440 (477)
20 PLN02152 indole-3-acetate beta 99.9 3.4E-22 7.3E-27 148.6 7.7 92 17-108 324-419 (455)
21 PLN02448 UDP-glycosyltransfera 99.9 6.5E-22 1.4E-26 147.3 8.8 89 19-107 322-416 (459)
22 cd03784 GT1_Gtf_like This fami 99.9 4.8E-22 1.1E-26 144.8 7.9 92 17-110 285-376 (401)
23 PLN00164 glucosyltransferase; 99.9 1.6E-21 3.5E-26 145.9 10.1 89 21-109 340-434 (480)
24 TIGR01426 MGT glycosyltransfer 99.9 1.5E-21 3.2E-26 142.3 9.4 95 15-111 270-364 (392)
25 KOG1192|consensus 99.9 1.3E-21 2.7E-26 146.0 7.7 93 19-111 334-427 (496)
26 PLN03015 UDP-glucosyl transfer 99.8 1.2E-20 2.6E-25 140.6 9.0 84 22-105 337-425 (470)
27 PLN02534 UDP-glycosyltransfera 99.8 9.4E-20 2E-24 136.6 8.5 87 19-105 343-443 (491)
28 PF04101 Glyco_tran_28_C: Glyc 99.8 3.5E-20 7.6E-25 121.2 3.3 105 4-109 36-147 (167)
29 PRK12446 undecaprenyldiphospho 99.7 1.4E-17 3.1E-22 120.5 8.4 104 3-108 218-327 (352)
30 COG0707 MurG UDP-N-acetylgluco 99.7 2.6E-17 5.6E-22 119.3 8.0 105 3-108 216-326 (357)
31 PF13528 Glyco_trans_1_3: Glyc 99.7 1.4E-16 3.1E-21 112.9 8.7 84 18-103 230-317 (318)
32 TIGR00661 MJ1255 conserved hyp 99.7 2.7E-16 5.8E-21 112.4 9.0 89 17-110 226-318 (321)
33 PRK00726 murG undecaprenyldiph 99.5 4.3E-13 9.4E-18 96.5 8.9 89 21-111 236-329 (357)
34 COG4671 Predicted glycosyl tra 99.4 3.2E-12 6.9E-17 91.7 7.6 89 20-109 277-368 (400)
35 cd03785 GT1_MurG MurG is an N- 99.3 1E-11 2.2E-16 88.8 9.3 90 19-110 234-328 (350)
36 PRK13608 diacylglycerol glucos 99.3 1.3E-11 2.8E-16 90.5 7.6 87 19-110 255-342 (391)
37 PRK13609 diacylglycerol glucos 99.2 5.1E-11 1.1E-15 86.5 8.3 88 17-110 253-342 (380)
38 TIGR01133 murG undecaprenyldip 99.2 1.5E-10 3.2E-15 82.7 7.4 80 29-110 243-325 (348)
39 PLN02605 monogalactosyldiacylg 99.1 1.5E-10 3.2E-15 84.6 6.9 85 20-109 265-351 (382)
40 KOG3349|consensus 99.1 5.7E-10 1.2E-14 71.6 6.8 64 22-87 65-133 (170)
41 TIGR03590 PseG pseudaminic aci 99.1 2.1E-10 4.5E-15 80.9 4.6 57 19-77 223-279 (279)
42 TIGR03492 conserved hypothetic 99.0 1.1E-09 2.3E-14 80.8 6.8 83 22-110 281-368 (396)
43 TIGR00215 lpxB lipid-A-disacch 98.8 2.5E-09 5.4E-14 78.5 3.4 74 31-107 262-348 (385)
44 COG5017 Uncharacterized conser 98.5 6.2E-07 1.3E-11 57.0 7.0 66 22-88 48-123 (161)
45 COG3980 spsG Spore coat polysa 98.5 3.3E-07 7.2E-12 64.6 5.9 91 18-111 208-298 (318)
46 PRK00025 lpxB lipid-A-disaccha 98.5 1.4E-07 3E-12 68.5 3.3 78 31-111 256-346 (380)
47 cd03814 GT1_like_2 This family 98.4 1.6E-06 3.4E-11 61.2 7.0 86 17-110 244-336 (364)
48 PRK05749 3-deoxy-D-manno-octul 98.2 5.2E-06 1.1E-10 61.3 6.6 85 21-110 303-392 (425)
49 cd03786 GT1_UDP-GlcNAc_2-Epime 98.2 1.2E-05 2.6E-10 57.8 8.1 83 19-110 257-341 (363)
50 TIGR00236 wecB UDP-N-acetylglu 98.1 2.6E-05 5.7E-10 56.5 8.2 83 18-110 253-338 (365)
51 cd05844 GT1_like_7 Glycosyltra 98.1 1.4E-05 3E-10 57.1 6.7 83 18-108 243-338 (367)
52 cd03801 GT1_YqgM_like This fam 98.0 1.9E-05 4E-10 55.0 6.2 86 17-110 253-345 (374)
53 cd03795 GT1_like_4 This family 98.0 3.7E-05 8E-10 54.5 7.2 87 17-110 241-336 (357)
54 cd03800 GT1_Sucrose_synthase T 97.9 4.5E-05 9.8E-10 54.9 6.9 85 17-109 280-371 (398)
55 cd03823 GT1_ExpE7_like This fa 97.9 8.8E-05 1.9E-09 52.1 7.9 84 18-109 241-332 (359)
56 PF00534 Glycos_transf_1: Glyc 97.9 2.7E-05 5.7E-10 50.4 4.7 86 17-110 70-162 (172)
57 cd03820 GT1_amsD_like This fam 97.8 8.7E-05 1.9E-09 51.5 6.8 85 18-110 233-323 (348)
58 PRK15484 lipopolysaccharide 1, 97.8 0.00012 2.6E-09 53.6 7.8 86 17-109 254-347 (380)
59 cd03808 GT1_cap1E_like This fa 97.8 8.3E-05 1.8E-09 51.9 6.1 84 18-109 244-332 (359)
60 cd03821 GT1_Bme6_like This fam 97.8 0.00014 3E-09 51.1 7.1 83 17-109 259-348 (375)
61 cd03794 GT1_wbuB_like This fam 97.8 0.0001 2.2E-09 52.0 6.3 85 18-110 273-369 (394)
62 cd03798 GT1_wlbH_like This fam 97.7 0.00029 6.4E-09 49.2 8.3 83 18-108 257-346 (377)
63 cd04946 GT1_AmsK_like This fam 97.7 0.0002 4.2E-09 53.0 7.6 87 19-110 288-381 (407)
64 cd03817 GT1_UGDG_like This fam 97.7 9.7E-05 2.1E-09 52.0 5.7 84 17-109 256-346 (374)
65 PRK15427 colanic acid biosynth 97.7 0.0002 4.4E-09 53.0 7.2 84 18-109 277-374 (406)
66 PRK14089 ipid-A-disaccharide s 97.7 3.4E-05 7.3E-10 56.3 2.9 69 31-102 230-315 (347)
67 cd03812 GT1_CapH_like This fam 97.7 0.00031 6.6E-09 49.9 7.7 86 17-111 246-336 (358)
68 cd03799 GT1_amsK_like This is 97.7 0.0002 4.4E-09 50.6 6.6 83 18-108 234-329 (355)
69 COG1519 KdtA 3-deoxy-D-manno-o 97.6 0.00012 2.5E-09 54.3 4.9 84 21-110 301-390 (419)
70 cd03804 GT1_wbaZ_like This fam 97.6 0.00024 5.2E-09 50.9 6.3 83 17-107 239-327 (351)
71 cd03807 GT1_WbnK_like This fam 97.6 0.00031 6.7E-09 49.2 6.6 82 18-109 249-335 (365)
72 PRK09922 UDP-D-galactose:(gluc 97.5 0.00093 2E-08 48.3 8.9 85 17-109 233-327 (359)
73 cd04962 GT1_like_5 This family 97.5 0.00026 5.7E-09 50.6 6.0 84 18-109 251-339 (371)
74 TIGR03449 mycothiol_MshA UDP-N 97.5 0.00046 9.9E-09 50.4 7.3 84 18-109 281-371 (405)
75 PLN02871 UDP-sulfoquinovose:DA 97.5 0.00034 7.3E-09 52.5 6.5 83 20-110 312-404 (465)
76 cd03822 GT1_ecORF704_like This 97.5 0.00047 1E-08 48.7 6.4 83 18-109 245-337 (366)
77 cd03818 GT1_ExpC_like This fam 97.4 0.00034 7.3E-09 51.2 5.5 84 19-110 280-370 (396)
78 cd03805 GT1_ALG2_like This fam 97.4 0.0009 2E-08 48.4 7.3 83 18-109 278-367 (392)
79 TIGR03087 stp1 sugar transfera 97.4 0.00034 7.3E-09 51.3 5.0 81 19-109 279-365 (397)
80 TIGR03088 stp2 sugar transfera 97.4 0.00074 1.6E-08 48.7 6.6 83 19-109 254-341 (374)
81 cd04951 GT1_WbdM_like This fam 97.4 0.00027 5.9E-09 50.1 4.3 78 18-105 243-325 (360)
82 cd03825 GT1_wcfI_like This fam 97.4 0.00047 1E-08 48.9 5.4 83 18-108 242-332 (365)
83 cd04949 GT1_gtfA_like This fam 97.3 0.00089 1.9E-08 48.2 6.4 86 17-109 258-348 (372)
84 cd03811 GT1_WabH_like This fam 97.3 0.0012 2.5E-08 45.8 6.5 83 18-108 244-334 (353)
85 cd03813 GT1_like_3 This family 97.3 0.001 2.3E-08 50.1 6.5 85 18-110 352-446 (475)
86 PF13692 Glyco_trans_1_4: Glyc 97.2 0.00066 1.4E-08 42.1 4.1 78 19-106 52-135 (135)
87 cd03819 GT1_WavL_like This fam 97.2 0.0018 3.9E-08 45.9 6.7 84 17-108 243-333 (355)
88 TIGR02472 sucr_P_syn_N sucrose 97.2 0.0013 2.8E-08 49.1 6.2 86 18-109 315-409 (439)
89 cd03816 GT1_ALG1_like This fam 97.1 0.0023 5E-08 47.4 7.0 76 21-106 295-381 (415)
90 PLN02275 transferase, transfer 97.1 0.0041 8.8E-08 45.4 7.9 75 20-104 286-371 (371)
91 TIGR02149 glgA_Coryne glycogen 97.1 0.0027 5.8E-08 45.9 7.0 83 21-109 261-355 (388)
92 cd03809 GT1_mtfB_like This fam 97.0 0.00033 7E-09 49.5 1.6 84 17-110 250-340 (365)
93 PRK10307 putative glycosyl tra 96.8 0.0055 1.2E-07 45.0 6.9 82 20-109 284-376 (412)
94 PRK15179 Vi polysaccharide bio 96.7 0.009 1.9E-07 47.5 7.7 82 18-105 572-658 (694)
95 PF04007 DUF354: Protein of un 96.7 0.016 3.5E-07 42.2 8.4 68 29-104 241-308 (335)
96 cd03796 GT1_PIG-A_like This fa 96.6 0.015 3.3E-07 42.6 7.8 80 18-107 248-334 (398)
97 cd03792 GT1_Trehalose_phosphor 96.5 0.014 3.1E-07 42.2 6.9 83 18-110 250-341 (372)
98 cd04955 GT1_like_6 This family 96.4 0.0052 1.1E-07 43.6 4.1 80 17-108 245-332 (363)
99 cd03802 GT1_AviGT4_like This f 96.3 0.019 4.1E-07 40.3 6.5 77 19-105 223-307 (335)
100 PF02350 Epimerase_2: UDP-N-ac 96.2 0.0019 4.2E-08 47.1 0.9 83 13-106 233-318 (346)
101 TIGR02095 glgA glycogen/starch 96.1 0.019 4.1E-07 43.2 6.0 82 16-105 342-436 (473)
102 cd04950 GT1_like_1 Glycosyltra 96.1 0.043 9.4E-07 40.0 7.7 77 19-107 253-341 (373)
103 TIGR02918 accessory Sec system 96.0 0.042 9.1E-07 42.1 7.2 84 18-106 374-467 (500)
104 TIGR02468 sucrsPsyn_pln sucros 95.9 0.028 6.1E-07 46.5 6.3 86 17-110 545-641 (1050)
105 PLN02846 digalactosyldiacylgly 95.8 0.057 1.2E-06 41.1 7.4 74 23-107 287-364 (462)
106 PF13844 Glyco_transf_41: Glyc 95.8 0.014 3.1E-07 44.3 4.1 69 19-87 341-414 (468)
107 PLN02501 digalactosyldiacylgly 95.8 0.049 1.1E-06 43.6 7.1 77 21-108 602-683 (794)
108 cd03806 GT1_ALG11_like This fa 95.8 0.041 8.8E-07 41.0 6.4 82 18-108 303-394 (419)
109 PRK09814 beta-1,6-galactofuran 95.6 0.037 8.1E-07 39.9 5.4 79 17-103 204-297 (333)
110 PRK14098 glycogen synthase; Pr 95.6 0.044 9.6E-07 41.8 6.0 84 15-104 357-449 (489)
111 PRK01021 lpxB lipid-A-disaccha 95.5 0.035 7.5E-07 43.5 5.3 77 31-111 483-576 (608)
112 cd01635 Glycosyltransferase_GT 95.4 0.037 8.1E-07 36.2 4.7 51 17-68 158-215 (229)
113 TIGR03713 acc_sec_asp1 accesso 95.4 0.033 7.1E-07 42.9 4.8 75 20-107 409-489 (519)
114 PF13524 Glyco_trans_1_2: Glyc 95.3 0.052 1.1E-06 31.6 4.4 59 45-111 9-67 (92)
115 PHA01633 putative glycosyl tra 95.1 0.13 2.9E-06 37.5 7.1 85 17-105 198-306 (335)
116 PF02684 LpxB: Lipid-A-disacch 94.7 0.064 1.4E-06 39.7 4.5 78 29-109 253-343 (373)
117 PLN02949 transferase, transfer 94.6 0.055 1.2E-06 41.1 4.1 80 18-106 333-422 (463)
118 PRK10017 colanic acid biosynth 94.5 0.23 5E-06 37.4 7.1 70 32-107 323-393 (426)
119 cd03791 GT1_Glycogen_synthase_ 94.4 0.077 1.7E-06 39.7 4.5 85 17-105 348-441 (476)
120 TIGR03568 NeuC_NnaA UDP-N-acet 94.3 0.14 3E-06 37.6 5.5 74 19-105 261-338 (365)
121 PRK00654 glgA glycogen synthas 94.1 0.12 2.6E-06 39.0 5.0 86 16-105 333-427 (466)
122 PF05159 Capsule_synth: Capsul 94.1 0.12 2.7E-06 36.1 4.8 45 18-65 181-225 (269)
123 COG0381 WecB UDP-N-acetylgluco 94.0 0.079 1.7E-06 39.3 3.7 83 19-111 261-346 (383)
124 PRK15490 Vi polysaccharide bio 94.0 0.26 5.7E-06 38.5 6.6 66 18-89 453-523 (578)
125 PRK14099 glycogen synthase; Pr 93.9 0.16 3.4E-06 38.8 5.3 90 17-108 347-449 (485)
126 PLN00142 sucrose synthase 93.4 0.48 1E-05 38.6 7.4 87 18-110 640-740 (815)
127 PRK04885 ppnK inorganic polyph 91.9 0.69 1.5E-05 32.7 5.9 30 37-66 34-69 (265)
128 PHA01630 putative group 1 glyc 91.8 0.51 1.1E-05 34.3 5.2 74 28-106 198-294 (331)
129 PF06258 Mito_fiss_Elm1: Mitoc 90.9 0.65 1.4E-05 33.6 5.1 57 29-87 221-281 (311)
130 PRK02649 ppnK inorganic polyph 90.9 0.99 2.1E-05 32.6 5.9 54 37-106 67-124 (305)
131 PRK02155 ppnK NAD(+)/NADH kina 90.5 1.3 2.7E-05 31.8 6.2 29 37-65 62-94 (291)
132 COG0438 RfaG Glycosyltransfera 90.4 2.3 4.9E-05 28.9 7.3 81 19-107 256-343 (381)
133 PLN02939 transferase, transfer 90.2 0.93 2E-05 37.7 5.7 83 19-105 836-930 (977)
134 PRK14077 pnk inorganic polypho 90.0 1.4 2.9E-05 31.6 6.0 29 37-65 63-95 (287)
135 COG1817 Uncharacterized protei 89.8 1.7 3.7E-05 31.8 6.2 54 28-85 244-297 (346)
136 PRK04539 ppnK inorganic polyph 89.7 2 4.3E-05 31.0 6.6 29 37-65 67-99 (296)
137 PRK10125 putative glycosyl tra 89.7 1.6 3.4E-05 32.6 6.3 71 20-99 286-364 (405)
138 PRK03372 ppnK inorganic polyph 89.7 1.3 2.9E-05 32.0 5.7 54 37-106 71-128 (306)
139 PLN02929 NADH kinase 89.6 1.2 2.5E-05 32.2 5.4 66 37-107 63-138 (301)
140 PRK01911 ppnK inorganic polyph 89.3 1.6 3.4E-05 31.4 5.8 54 37-106 63-120 (292)
141 TIGR02400 trehalose_OtsA alpha 89.3 3.5 7.6E-05 31.4 8.0 74 23-107 339-423 (456)
142 cd03788 GT1_TPS Trehalose-6-Ph 89.1 0.92 2E-05 34.4 4.8 75 23-107 344-428 (460)
143 PRK02231 ppnK inorganic polyph 89.0 2 4.4E-05 30.5 6.2 29 37-65 41-73 (272)
144 TIGR02470 sucr_synth sucrose s 89.0 0.94 2E-05 36.8 4.9 81 18-104 617-707 (784)
145 COG4370 Uncharacterized protei 88.9 1.5 3.2E-05 32.2 5.4 82 24-110 299-383 (412)
146 PRK14075 pnk inorganic polypho 88.7 2.1 4.4E-05 30.1 6.0 54 37-106 40-94 (256)
147 PRK03501 ppnK inorganic polyph 88.2 2.3 5E-05 30.1 6.0 55 37-106 38-97 (264)
148 PRK03708 ppnK inorganic polyph 87.8 1.8 3.9E-05 30.8 5.3 29 38-66 57-88 (277)
149 PRK01185 ppnK inorganic polyph 87.8 2.3 4.9E-05 30.3 5.8 53 38-106 52-105 (271)
150 cd03793 GT1_Glycogen_synthase_ 87.3 2.7 5.9E-05 33.1 6.3 72 31-105 469-551 (590)
151 PLN02316 synthase/transferase 87.1 6.2 0.00014 33.3 8.6 84 19-106 899-998 (1036)
152 PRK03378 ppnK inorganic polyph 87.0 2.4 5.3E-05 30.4 5.6 54 37-106 62-119 (292)
153 COG3660 Predicted nucleoside-d 86.5 0.94 2E-05 32.4 3.2 59 26-86 234-297 (329)
154 PF07429 Glyco_transf_56: 4-al 86.5 5.5 0.00012 29.5 7.2 80 20-105 245-332 (360)
155 PRK01231 ppnK inorganic polyph 86.2 3.3 7.2E-05 29.8 6.0 54 37-106 61-118 (295)
156 TIGR02919 accessory Sec system 85.5 3.6 7.8E-05 31.2 6.1 83 16-108 325-413 (438)
157 PF06506 PrpR_N: Propionate ca 85.0 0.39 8.4E-06 31.6 0.7 33 35-68 31-63 (176)
158 PLN02935 Bifunctional NADH kin 84.2 4.1 8.9E-05 31.6 5.9 29 37-65 261-293 (508)
159 PRK14076 pnk inorganic polypho 83.8 4.1 9E-05 31.9 5.9 53 38-106 348-404 (569)
160 PF11071 DUF2872: Protein of u 83.1 4 8.7E-05 26.0 4.6 62 37-104 71-140 (141)
161 PF09547 Spore_IV_A: Stage IV 83.1 11 0.00025 28.9 7.7 73 35-107 143-236 (492)
162 PRK02797 4-alpha-L-fucosyltran 82.8 11 0.00024 27.6 7.3 78 20-103 206-291 (322)
163 PF04464 Glyphos_transf: CDP-G 81.8 0.75 1.6E-05 33.5 1.2 82 19-107 251-337 (369)
164 PRK04761 ppnK inorganic polyph 80.6 2.5 5.5E-05 29.6 3.4 30 37-66 24-57 (246)
165 COG0763 LpxB Lipid A disacchar 80.1 2 4.2E-05 32.1 2.8 70 37-107 263-345 (381)
166 KOG4180|consensus 79.4 1.2 2.6E-05 32.7 1.5 28 37-64 104-135 (395)
167 COG2327 WcaK Polysaccharide py 79.0 15 0.00033 27.6 7.2 70 31-106 280-350 (385)
168 PLN03063 alpha,alpha-trehalose 78.4 5.8 0.00013 32.5 5.2 72 26-106 362-443 (797)
169 PLN02727 NAD kinase 77.8 9.4 0.0002 31.9 6.2 30 37-66 742-775 (986)
170 PF15024 Glyco_transf_18: Glyc 77.6 4.8 0.0001 31.6 4.4 85 18-107 320-431 (559)
171 PRK02645 ppnK inorganic polyph 75.9 4.2 9.2E-05 29.3 3.5 30 37-66 56-89 (305)
172 KOG0853|consensus 74.9 1.1 2.4E-05 34.5 0.4 70 37-110 364-437 (495)
173 TIGR03646 YtoQ_fam YtoQ family 72.7 8.6 0.00019 24.6 3.9 28 37-64 74-109 (144)
174 TIGR00725 conserved hypothetic 71.8 9.2 0.0002 24.9 4.1 39 28-67 82-124 (159)
175 PF03641 Lysine_decarbox: Poss 71.8 15 0.00032 23.0 4.9 57 24-81 39-110 (133)
176 TIGR00730 conserved hypothetic 71.3 9.7 0.00021 25.3 4.2 59 22-81 80-152 (178)
177 PRK15424 propionate catabolism 71.2 5.8 0.00013 31.0 3.5 31 36-67 62-92 (538)
178 PRK12446 undecaprenyldiphospho 70.0 6.3 0.00014 28.8 3.3 33 33-65 86-121 (352)
179 TIGR02193 heptsyl_trn_I lipopo 69.7 13 0.00028 26.4 4.8 68 31-104 249-319 (319)
180 KOG4626|consensus 69.7 3 6.5E-05 33.5 1.6 47 40-87 841-888 (966)
181 TIGR02329 propionate_PrpR prop 68.2 30 0.00065 27.1 6.7 31 36-67 52-82 (526)
182 PRK00561 ppnK inorganic polyph 67.8 8.7 0.00019 27.2 3.5 30 37-66 32-65 (259)
183 PF04230 PS_pyruv_trans: Polys 67.6 9.7 0.00021 25.6 3.7 33 31-66 252-284 (286)
184 PF01513 NAD_kinase: ATP-NAD k 66.7 8.3 0.00018 27.4 3.3 30 37-66 75-108 (285)
185 TIGR00661 MJ1255 conserved hyp 65.4 9.1 0.0002 27.3 3.3 33 33-65 88-120 (321)
186 TIGR00421 ubiX_pad polyprenyl 64.9 19 0.00042 23.9 4.6 49 38-86 75-144 (181)
187 smart00046 DAGKc Diacylglycero 64.7 8 0.00017 23.9 2.6 30 38-67 49-87 (124)
188 PRK13057 putative lipid kinase 63.6 10 0.00023 26.7 3.3 30 37-66 49-82 (287)
189 PRK06270 homoserine dehydrogen 62.6 49 0.0011 24.2 6.7 58 29-86 80-149 (341)
190 COG3914 Spy Predicted O-linked 62.3 5.2 0.00011 31.6 1.7 52 19-72 488-543 (620)
191 PRK11914 diacylglycerol kinase 62.2 11 0.00023 27.0 3.2 30 37-66 63-96 (306)
192 COG0297 GlgA Glycogen synthase 62.1 49 0.0011 25.7 6.8 89 11-104 340-440 (487)
193 PRK13059 putative lipid kinase 61.6 10 0.00022 27.0 2.9 30 37-66 55-90 (295)
194 COG0379 NadA Quinolinate synth 61.5 34 0.00075 25.1 5.6 56 9-66 112-167 (324)
195 PRK05579 bifunctional phosphop 59.5 74 0.0016 24.0 9.1 69 37-105 81-182 (399)
196 PRK05920 aromatic acid decarbo 58.3 25 0.00053 24.0 4.2 33 53-85 125-161 (204)
197 PRK14116 gpmA phosphoglyceromu 58.1 8.3 0.00018 26.4 2.0 23 38-60 175-197 (228)
198 TIGR02482 PFKA_ATP 6-phosphofr 57.4 19 0.0004 26.1 3.7 34 34-67 87-124 (301)
199 PRK14501 putative bifunctional 56.9 12 0.00026 30.2 2.9 75 22-107 344-429 (726)
200 cd07037 TPP_PYR_MenD Pyrimidin 56.8 22 0.00047 23.2 3.7 29 37-65 59-93 (162)
201 PRK13054 lipid kinase; Reviewe 55.9 17 0.00037 25.9 3.3 30 37-66 55-92 (300)
202 COG0061 nadF NAD kinase [Coenz 55.6 54 0.0012 23.3 5.8 53 37-105 54-110 (281)
203 PRK14119 gpmA phosphoglyceromu 55.4 11 0.00024 25.8 2.2 22 39-60 176-197 (228)
204 cd07039 TPP_PYR_POX Pyrimidine 55.2 25 0.00053 22.8 3.8 29 37-65 62-96 (164)
205 TIGR03848 MSMEG_4193 probable 55.0 15 0.00032 24.5 2.8 22 40-61 147-168 (204)
206 cd08549 G1PDH_related Glycerol 54.8 18 0.00039 26.3 3.4 29 38-67 80-113 (332)
207 TIGR00732 dprA DNA protecting 54.6 46 0.001 22.8 5.2 39 48-86 171-211 (220)
208 cd07766 DHQ_Fe-ADH Dehydroquin 54.3 19 0.0004 25.9 3.4 30 37-67 77-113 (332)
209 PF10093 DUF2331: Uncharacteri 54.1 38 0.00083 25.4 4.9 47 21-70 245-294 (374)
210 PRK13463 phosphatase PhoE; Pro 54.0 12 0.00026 25.0 2.2 23 39-61 145-167 (203)
211 TIGR02836 spore_IV_A stage IV 53.3 1.1E+02 0.0023 23.9 7.4 75 33-107 140-236 (492)
212 cd08171 GlyDH-like2 Glycerol d 52.9 21 0.00045 26.0 3.5 31 36-67 76-111 (345)
213 COG3199 Predicted inorganic po 52.9 17 0.00037 27.0 2.9 42 37-78 99-151 (355)
214 TIGR00147 lipid kinase, YegS/R 51.9 21 0.00045 25.2 3.2 30 37-66 56-91 (293)
215 PRK14118 gpmA phosphoglyceromu 51.9 13 0.00028 25.5 2.1 23 39-61 175-197 (227)
216 PF12496 BNIP2: Bcl2-/adenovir 51.7 6.6 0.00014 24.8 0.6 9 40-48 115-123 (127)
217 PRK13695 putative NTPase; Prov 51.5 63 0.0014 20.8 5.7 55 50-104 118-172 (174)
218 PRK13055 putative lipid kinase 51.2 22 0.00048 25.8 3.3 30 37-66 58-93 (334)
219 TIGR03162 ribazole_cobC alpha- 50.8 14 0.0003 23.8 2.1 23 38-60 138-160 (177)
220 PRK14117 gpmA phosphoglyceromu 50.8 14 0.0003 25.4 2.1 22 39-60 176-197 (230)
221 PF09989 DUF2229: CoA enzyme a 50.1 46 0.001 22.9 4.6 45 62-107 2-50 (221)
222 PRK03202 6-phosphofructokinase 49.9 30 0.00065 25.3 3.8 34 34-67 89-125 (320)
223 PF12689 Acid_PPase: Acid Phos 49.5 28 0.00061 23.0 3.3 48 56-103 119-166 (169)
224 PF14350 Beta_protein: Beta pr 48.1 27 0.00059 25.4 3.4 63 43-105 77-147 (347)
225 PTZ00122 phosphoglycerate muta 48.0 20 0.00044 25.8 2.7 23 39-61 234-256 (299)
226 PRK15004 alpha-ribazole phosph 48.0 16 0.00034 24.3 2.0 24 38-61 142-165 (199)
227 PRK13337 putative lipid kinase 47.8 27 0.00058 24.9 3.3 30 37-66 56-91 (304)
228 TIGR02113 coaC_strep phosphopa 47.7 80 0.0017 20.9 6.3 49 37-85 75-146 (177)
229 PF02481 DNA_processg_A: DNA r 47.1 41 0.00089 22.9 4.0 38 48-86 171-210 (212)
230 PF01372 Melittin: Melittin; 47.1 2.8 6.1E-05 18.7 -1.1 17 47-63 1-17 (26)
231 PRK10964 ADP-heptose:LPS hepto 47.0 33 0.00072 24.4 3.7 67 32-105 249-321 (322)
232 PRK00861 putative lipid kinase 46.7 30 0.00066 24.5 3.4 30 37-66 56-89 (300)
233 TIGR02483 PFK_mixed phosphofru 46.5 34 0.00073 25.0 3.6 34 34-67 90-126 (324)
234 PRK11475 DNA-binding transcrip 46.2 91 0.002 21.0 7.8 52 56-109 66-118 (207)
235 cd08177 MAR Maleylacetate redu 46.1 31 0.00068 25.0 3.5 30 37-67 76-110 (337)
236 cd08550 GlyDH-like Glycerol_de 45.8 31 0.00067 25.2 3.4 31 36-67 75-110 (349)
237 PRK03482 phosphoglycerate muta 45.3 21 0.00045 24.0 2.3 23 39-61 144-166 (215)
238 cd08181 PPD-like 1,3-propanedi 45.3 31 0.00068 25.3 3.4 32 35-67 80-133 (357)
239 TIGR02699 archaeo_AfpA archaeo 44.7 68 0.0015 21.3 4.6 28 39-66 79-123 (174)
240 PRK01112 phosphoglyceromutase; 44.4 19 0.00042 24.7 2.1 24 38-61 174-197 (228)
241 cd00763 Bacterial_PFK Phosphof 44.2 38 0.00083 24.7 3.6 34 34-67 88-124 (317)
242 cd03789 GT1_LPS_heptosyltransf 44.2 31 0.00066 24.0 3.1 31 31-64 193-223 (279)
243 PRK01295 phosphoglyceromutase; 43.4 20 0.00043 24.1 2.0 24 38-61 151-174 (206)
244 cd07035 TPP_PYR_POX_like Pyrim 42.8 84 0.0018 19.7 7.9 28 38-65 59-92 (155)
245 PTZ00123 phosphoglycerate muta 42.7 21 0.00046 24.5 2.1 22 39-60 163-184 (236)
246 PRK14071 6-phosphofructokinase 41.4 46 0.00099 24.7 3.7 34 34-67 103-140 (360)
247 cd01147 HemV-2 Metal binding p 41.3 69 0.0015 21.8 4.5 51 29-80 66-120 (262)
248 TIGR02478 6PF1K_euk 6-phosphof 41.3 1.6E+02 0.0035 24.3 7.0 60 45-104 196-272 (745)
249 TIGR02638 lactal_redase lactal 40.9 37 0.0008 25.1 3.2 31 36-67 84-139 (379)
250 COG2099 CobK Precorrin-6x redu 40.7 29 0.00063 24.6 2.4 33 32-64 190-228 (257)
251 cd07038 TPP_PYR_PDC_IPDC_like 40.6 52 0.0011 21.2 3.6 28 38-65 59-92 (162)
252 TIGR01258 pgm_1 phosphoglycera 40.3 24 0.00052 24.6 2.0 22 39-60 175-196 (245)
253 PF00781 DAGK_cat: Diacylglyce 40.0 34 0.00074 20.9 2.5 28 39-66 55-90 (130)
254 COG3195 Uncharacterized protei 39.9 89 0.0019 20.8 4.4 39 70-108 110-148 (176)
255 cd01141 TroA_d Periplasmic bin 39.5 78 0.0017 20.4 4.3 36 30-66 62-100 (186)
256 PF00282 Pyridoxal_deC: Pyrido 39.4 1.6E+02 0.0034 21.9 7.1 68 38-106 103-191 (373)
257 cd08187 BDH Butanol dehydrogen 38.6 47 0.001 24.6 3.5 31 36-67 84-137 (382)
258 TIGR03609 S_layer_CsaB polysac 38.4 45 0.00097 23.5 3.2 45 32-82 246-290 (298)
259 TIGR02398 gluc_glyc_Psyn gluco 38.4 1.6E+02 0.0034 23.0 6.3 79 22-108 364-450 (487)
260 PRK13840 sucrose phosphorylase 38.3 49 0.0011 25.8 3.6 45 56-100 370-414 (495)
261 PRK11761 cysM cysteine synthas 38.1 1.5E+02 0.0032 21.2 7.3 50 53-103 81-131 (296)
262 PRK06555 pyrophosphate--fructo 38.1 39 0.00084 25.6 2.9 34 34-67 108-150 (403)
263 PF00365 PFK: Phosphofructokin 38.1 30 0.00065 24.7 2.3 33 34-66 88-124 (282)
264 cd08174 G1PDH-like Glycerol-1- 37.7 48 0.0011 23.9 3.4 29 38-67 75-108 (331)
265 cd08191 HHD 6-hydroxyhexanoate 37.6 51 0.0011 24.5 3.5 31 36-67 77-130 (386)
266 PRK14115 gpmA phosphoglyceromu 37.4 30 0.00065 24.1 2.2 22 39-60 175-196 (247)
267 COG1887 TagB Putative glycosyl 37.1 1.8E+02 0.0039 21.9 6.7 78 23-107 273-354 (388)
268 PLN00011 cysteine synthase 37.1 1.6E+02 0.0035 21.3 7.0 51 39-90 69-124 (323)
269 cd08180 PDD 1,3-propanediol de 37.0 49 0.0011 23.9 3.3 31 36-67 76-118 (332)
270 COG0406 phoE Broad specificity 36.8 34 0.00074 22.6 2.3 22 40-61 148-169 (208)
271 PF12000 Glyco_trans_4_3: Gkyc 36.5 21 0.00046 23.6 1.2 28 39-66 67-96 (171)
272 cd08176 LPO Lactadehyde:propan 36.5 52 0.0011 24.3 3.4 30 37-67 84-136 (377)
273 PRK13462 acid phosphatase; Pro 36.2 39 0.00084 22.7 2.5 22 39-60 141-162 (203)
274 PRK06276 acetolactate synthase 36.2 1.4E+02 0.0031 23.4 5.9 29 37-65 62-96 (586)
275 PRK14120 gpmA phosphoglyceromu 36.1 30 0.00065 24.2 2.0 23 39-61 177-199 (249)
276 PRK15118 universal stress glob 35.9 70 0.0015 19.5 3.6 31 37-67 102-140 (144)
277 PRK12361 hypothetical protein; 35.9 46 0.001 25.9 3.2 30 37-66 296-329 (547)
278 COG4231 Indolepyruvate ferredo 35.8 1E+02 0.0022 25.0 4.9 65 42-106 456-543 (640)
279 COG2230 Cfa Cyclopropane fatty 35.8 24 0.00051 25.4 1.4 44 40-83 75-121 (283)
280 PF05693 Glycogen_syn: Glycoge 35.6 94 0.002 25.1 4.7 72 29-104 462-541 (633)
281 TIGR03164 UHCUDC OHCU decarbox 35.5 1.3E+02 0.0027 19.6 5.0 38 70-107 97-134 (157)
282 COG4394 Uncharacterized protei 35.5 1.1E+02 0.0023 22.6 4.6 45 20-67 238-285 (370)
283 TIGR00045 glycerate kinase. Th 35.5 52 0.0011 24.7 3.2 40 24-65 271-322 (375)
284 cd08193 HVD 5-hydroxyvalerate 35.4 55 0.0012 24.2 3.4 31 36-67 81-134 (376)
285 PRK10116 universal stress prot 35.4 86 0.0019 19.0 3.9 14 56-69 129-142 (142)
286 PF02445 NadA: Quinolinate syn 35.2 22 0.00048 25.8 1.2 49 16-66 96-144 (296)
287 COG1560 HtrB Lauroyl/myristoyl 35.2 1.8E+02 0.0038 21.2 6.1 41 43-83 107-148 (308)
288 PRK13798 putative OHCU decarbo 35.1 1.3E+02 0.0029 19.7 5.0 38 70-107 102-139 (166)
289 cd00363 PFK Phosphofructokinas 34.8 68 0.0015 23.6 3.7 34 34-67 88-130 (338)
290 cd08551 Fe-ADH iron-containing 34.7 57 0.0012 23.9 3.4 30 37-67 79-131 (370)
291 TIGR03852 sucrose_gtfA sucrose 34.5 60 0.0013 25.2 3.5 46 56-101 360-405 (470)
292 PF12146 Hydrolase_4: Putative 33.7 41 0.00088 19.0 2.0 46 21-86 3-48 (79)
293 COG0496 SurE Predicted acid ph 33.7 91 0.002 22.1 4.0 27 40-67 100-126 (252)
294 PF05014 Nuc_deoxyrib_tr: Nucl 33.6 68 0.0015 19.1 3.1 31 37-67 60-98 (113)
295 PRK06029 3-octaprenyl-4-hydrox 33.5 66 0.0014 21.6 3.2 50 38-87 78-148 (185)
296 PLN02496 probable phosphopanto 33.2 1.6E+02 0.0035 20.2 6.7 75 30-106 90-199 (209)
297 PF09884 DUF2111: Uncharacteri 32.4 22 0.00048 20.7 0.7 17 52-68 52-68 (84)
298 PF02776 TPP_enzyme_N: Thiamin 32.2 73 0.0016 20.5 3.3 29 37-65 63-97 (172)
299 cd00764 Eukaryotic_PFK Phospho 32.2 2.7E+02 0.0059 23.2 6.9 22 45-66 199-220 (762)
300 PF01075 Glyco_transf_9: Glyco 32.1 58 0.0012 22.0 2.9 30 32-64 179-208 (247)
301 cd08194 Fe-ADH6 Iron-containin 32.0 67 0.0015 23.7 3.4 31 36-67 78-131 (375)
302 PRK07313 phosphopantothenoylcy 31.8 1.6E+02 0.0034 19.6 6.6 69 37-105 76-179 (182)
303 PRK06774 para-aminobenzoate sy 31.2 1.5E+02 0.0033 19.5 4.7 57 17-75 21-88 (191)
304 PRK14072 6-phosphofructokinase 31.1 76 0.0017 24.1 3.6 34 34-67 99-141 (416)
305 PF05690 ThiG: Thiazole biosyn 31.1 1.4E+02 0.003 21.2 4.5 27 61-87 124-150 (247)
306 TIGR03837 efp_adjacent_2 conse 31.1 1.4E+02 0.003 22.5 4.8 46 21-69 243-291 (371)
307 TIGR03702 lip_kinase_YegS lipi 30.7 64 0.0014 22.8 3.0 30 37-66 51-88 (293)
308 TIGR03739 PRTRC_D PRTRC system 30.4 1.1E+02 0.0024 22.0 4.2 42 40-82 276-319 (320)
309 TIGR01274 ACC_deam 1-aminocycl 30.4 2.1E+02 0.0046 20.7 8.2 68 37-104 64-148 (337)
310 PRK10624 L-1,2-propanediol oxi 30.4 66 0.0014 23.8 3.1 31 36-67 85-140 (382)
311 PF04007 DUF354: Protein of un 30.3 90 0.0019 23.0 3.7 30 37-66 82-111 (335)
312 TIGR00173 menD 2-succinyl-5-en 30.2 2.1E+02 0.0046 21.5 5.8 27 38-64 63-95 (432)
313 COG2022 ThiG Uncharacterized e 30.1 62 0.0013 22.9 2.7 45 58-102 128-180 (262)
314 cd08183 Fe-ADH2 Iron-containin 30.0 74 0.0016 23.5 3.3 13 36-48 73-85 (374)
315 PRK10840 transcriptional regul 30.0 1.6E+02 0.0036 19.3 5.9 51 57-109 79-129 (216)
316 PF04558 tRNA_synt_1c_R1: Glut 30.0 68 0.0015 21.1 2.8 29 72-105 102-131 (164)
317 PLN02884 6-phosphofructokinase 29.9 80 0.0017 24.0 3.5 34 34-67 139-181 (411)
318 TIGR03180 UraD_2 OHCU decarbox 29.6 1.6E+02 0.0034 19.2 4.4 38 70-107 97-134 (158)
319 PRK08527 acetolactate synthase 29.5 83 0.0018 24.6 3.6 29 37-65 65-99 (563)
320 PRK06112 acetolactate synthase 29.2 72 0.0016 25.0 3.3 29 37-65 73-107 (578)
321 PRK09423 gldA glycerol dehydro 29.0 90 0.0019 23.0 3.6 30 37-67 83-117 (366)
322 PRK06882 acetolactate synthase 28.9 82 0.0018 24.6 3.5 29 37-65 66-100 (574)
323 PF00391 PEP-utilizers: PEP-ut 28.9 78 0.0017 17.8 2.6 47 18-65 8-60 (80)
324 cd08188 Fe-ADH4 Iron-containin 28.8 85 0.0018 23.2 3.4 31 36-67 83-136 (377)
325 cd00764 Eukaryotic_PFK Phospho 28.5 89 0.0019 25.8 3.7 33 34-66 474-516 (762)
326 PRK10586 putative oxidoreducta 28.5 93 0.002 23.0 3.6 30 37-67 85-119 (362)
327 PF00072 Response_reg: Respons 28.4 1.2E+02 0.0026 17.2 5.2 43 57-101 70-112 (112)
328 PRK10100 DNA-binding transcrip 28.2 2E+02 0.0042 19.5 7.2 50 57-109 80-130 (216)
329 cd08769 DAP_dppA_2 Peptidase M 28.1 1.1E+02 0.0025 21.8 3.8 17 54-72 143-159 (270)
330 PRK09932 glycerate kinase II; 27.9 86 0.0019 23.6 3.3 59 24-86 272-342 (381)
331 PRK10736 hypothetical protein; 27.7 2.5E+02 0.0053 21.2 5.6 58 38-100 220-283 (374)
332 PF13685 Fe-ADH_2: Iron-contai 27.6 81 0.0018 22.2 3.0 29 37-66 74-107 (250)
333 PRK10422 lipopolysaccharide co 27.5 91 0.002 22.6 3.4 31 31-64 257-287 (352)
334 PRK15481 transcriptional regul 27.4 2.5E+02 0.0055 20.8 5.8 13 40-52 143-155 (431)
335 TIGR01139 cysK cysteine syntha 27.3 2.3E+02 0.0049 20.0 7.0 37 54-91 76-113 (298)
336 cd08170 GlyDH Glycerol dehydro 26.9 90 0.002 22.7 3.3 31 36-67 75-110 (351)
337 cd08197 DOIS 2-deoxy-scyllo-in 26.6 95 0.002 22.9 3.3 30 37-67 80-119 (355)
338 PRK10360 DNA-binding transcrip 26.6 1.7E+02 0.0037 18.4 7.0 69 37-107 46-119 (196)
339 CHL00162 thiG thiamin biosynth 26.5 80 0.0017 22.6 2.8 29 60-88 137-165 (267)
340 PRK07064 hypothetical protein; 26.1 1.1E+02 0.0024 23.7 3.7 29 37-65 65-99 (544)
341 cd01149 HutB Hemin binding pro 26.1 2E+02 0.0044 19.2 4.7 38 29-66 49-89 (235)
342 TIGR02195 heptsyl_trn_II lipop 26.0 91 0.002 22.2 3.1 30 32-64 247-276 (334)
343 cd08770 DAP_dppA_3 Peptidase M 25.9 2E+02 0.0044 20.5 4.7 19 54-74 143-161 (263)
344 PRK15454 ethanol dehydrogenase 25.9 1E+02 0.0023 23.0 3.5 19 35-54 103-121 (395)
345 PRK00843 egsA NAD(P)-dependent 25.7 1.1E+02 0.0025 22.3 3.6 30 37-67 86-120 (350)
346 PLN02470 acetolactate synthase 25.6 1.1E+02 0.0023 24.1 3.7 29 37-65 75-109 (585)
347 PRK14021 bifunctional shikimat 25.6 1.1E+02 0.0024 24.0 3.7 28 38-66 269-303 (542)
348 PLN02958 diacylglycerol kinase 25.5 88 0.0019 24.2 3.1 30 37-66 167-207 (481)
349 cd08172 GlyDH-like1 Glycerol d 25.4 1.1E+02 0.0025 22.2 3.6 30 37-67 75-109 (347)
350 PRK13525 glutamine amidotransf 25.3 1.3E+02 0.0028 19.9 3.6 33 32-66 34-80 (189)
351 PF11238 DUF3039: Protein of u 25.3 61 0.0013 17.6 1.6 17 48-64 14-30 (58)
352 cd08182 HEPD Hydroxyethylphosp 25.3 1.1E+02 0.0023 22.6 3.4 12 37-48 76-87 (367)
353 PRK08266 hypothetical protein; 25.2 1.2E+02 0.0025 23.6 3.7 28 38-65 68-101 (542)
354 PRK10342 glycerate kinase I; P 25.1 1.1E+02 0.0023 23.1 3.4 58 24-85 272-341 (381)
355 COG4080 SpoU rRNA Methylase fa 25.0 92 0.002 20.1 2.6 30 40-69 30-67 (147)
356 PRK11864 2-ketoisovalerate fer 25.0 2.8E+02 0.006 20.2 5.6 62 44-105 105-195 (300)
357 TIGR02201 heptsyl_trn_III lipo 24.9 1.1E+02 0.0023 22.0 3.3 30 32-64 256-285 (344)
358 PRK07238 bifunctional RNase H/ 24.9 65 0.0014 23.7 2.2 24 38-61 313-336 (372)
359 PRK08322 acetolactate synthase 24.9 1.1E+02 0.0025 23.6 3.6 29 37-65 62-96 (547)
360 COG1052 LdhA Lactate dehydroge 24.7 1.6E+02 0.0034 21.6 4.1 22 25-48 189-210 (324)
361 PF02441 Flavoprotein: Flavopr 24.6 86 0.0019 19.2 2.5 16 53-68 105-120 (129)
362 COG0313 Predicted methyltransf 24.5 72 0.0016 22.9 2.3 24 42-65 90-113 (275)
363 PRK09375 quinolinate synthetas 24.4 61 0.0013 23.8 1.9 56 9-66 110-165 (319)
364 TIGR02518 EutH_ACDH acetaldehy 24.3 1.4E+02 0.003 23.1 4.0 33 32-64 181-213 (488)
365 PF11248 DUF3046: Protein of u 24.2 35 0.00075 18.9 0.5 23 39-61 24-46 (63)
366 PRK10916 ADP-heptose:LPS hepto 24.2 1E+02 0.0023 22.2 3.2 30 32-64 257-286 (348)
367 PRK13935 stationary phase surv 24.2 75 0.0016 22.5 2.3 19 48-66 110-128 (253)
368 COG1618 Predicted nucleotide k 24.0 2.3E+02 0.005 19.0 5.5 55 50-106 122-177 (179)
369 PRK07710 acetolactate synthase 24.0 1.2E+02 0.0025 23.8 3.6 29 37-65 77-111 (571)
370 PRK06456 acetolactate synthase 23.8 1.2E+02 0.0027 23.6 3.7 29 37-65 67-101 (572)
371 TIGR02478 6PF1K_euk 6-phosphof 23.8 1.2E+02 0.0026 25.0 3.7 33 34-66 474-516 (745)
372 cd07067 HP_PGM_like Histidine 23.7 80 0.0017 19.5 2.3 23 38-60 100-122 (153)
373 PRK07092 benzoylformate decarb 23.5 1.1E+02 0.0025 23.6 3.4 29 37-65 72-106 (530)
374 PRK08978 acetolactate synthase 23.4 1.3E+02 0.0028 23.4 3.7 29 37-65 62-96 (548)
375 PRK06203 aroB 3-dehydroquinate 23.4 99 0.0021 23.2 3.0 29 38-67 111-146 (389)
376 PF09349 OHCU_decarbox: OHCU d 23.2 1.9E+02 0.004 18.7 3.9 38 71-108 101-138 (159)
377 KOG3446|consensus 23.2 1.2E+02 0.0027 17.9 2.7 46 58-105 49-95 (97)
378 PRK04346 tryptophan synthase s 23.1 3.4E+02 0.0073 20.6 6.4 68 38-105 106-182 (397)
379 PRK05858 hypothetical protein; 23.1 1.3E+02 0.0029 23.3 3.7 29 37-65 66-100 (542)
380 cd08663 DAP_dppA_1 Peptidase M 23.1 2.4E+02 0.0051 20.2 4.6 19 54-74 143-161 (266)
381 PRK05637 anthranilate synthase 23.1 2.5E+02 0.0054 19.0 4.7 58 16-75 22-89 (208)
382 PF12894 Apc4_WD40: Anaphase-p 23.1 53 0.0011 16.8 1.1 18 17-34 9-26 (47)
383 COG1597 LCB5 Sphingosine kinas 22.9 70 0.0015 23.0 2.0 30 37-66 57-91 (301)
384 PRK09259 putative oxalyl-CoA d 22.8 1.3E+02 0.0029 23.5 3.7 28 38-65 72-105 (569)
385 PF02571 CbiJ: Precorrin-6x re 22.6 1.1E+02 0.0024 21.4 2.9 33 32-64 188-225 (249)
386 PRK07979 acetolactate synthase 22.4 1.3E+02 0.0028 23.6 3.5 29 37-65 66-100 (574)
387 PRK10852 thiosulfate transport 22.4 2.2E+02 0.0048 20.9 4.6 27 38-64 57-85 (338)
388 PRK04155 chaperone protein Hch 22.4 69 0.0015 23.0 1.9 29 38-66 181-215 (287)
389 PRK05670 anthranilate synthase 22.3 2.2E+02 0.0047 18.7 4.2 57 18-75 22-88 (189)
390 PF10686 DUF2493: Protein of u 22.2 90 0.0019 17.4 2.0 29 38-66 31-65 (71)
391 PF02593 dTMP_synthase: Thymid 22.2 1.9E+02 0.004 20.1 3.9 50 37-86 50-108 (217)
392 PRK06048 acetolactate synthase 22.1 1.4E+02 0.003 23.3 3.7 29 37-65 69-103 (561)
393 PRK08199 thiamine pyrophosphat 22.1 1.4E+02 0.003 23.3 3.6 28 37-64 70-103 (557)
394 PRK06457 pyruvate dehydrogenas 21.8 1.4E+02 0.0031 23.2 3.6 29 37-65 63-97 (549)
395 cd08185 Fe-ADH1 Iron-containin 21.7 1.2E+02 0.0027 22.3 3.2 12 37-48 82-93 (380)
396 PRK07282 acetolactate synthase 21.7 1.4E+02 0.0031 23.3 3.7 28 38-65 73-106 (566)
397 PRK08155 acetolactate synthase 21.6 1.5E+02 0.0032 23.2 3.7 29 37-65 75-109 (564)
398 PRK14071 6-phosphofructokinase 21.6 2E+02 0.0044 21.4 4.2 22 45-66 187-208 (360)
399 PRK06725 acetolactate synthase 21.5 1.4E+02 0.0031 23.4 3.6 29 37-65 76-110 (570)
400 cd08175 G1PDH Glycerol-1-phosp 21.4 1.4E+02 0.003 21.7 3.4 29 38-67 80-113 (348)
401 TIGR00118 acolac_lg acetolacta 21.4 1.5E+02 0.0033 23.1 3.7 28 38-65 64-97 (558)
402 COG5039 Exopolysaccharide bios 21.3 3.5E+02 0.0076 20.1 5.8 63 37-104 267-331 (339)
403 PRK09982 universal stress prot 21.2 1.8E+02 0.0039 17.9 3.5 30 37-66 102-139 (142)
404 TIGR02720 pyruv_oxi_spxB pyruv 21.2 1.5E+02 0.0032 23.3 3.7 29 37-65 62-96 (575)
405 PF01497 Peripla_BP_2: Peripla 21.1 2.1E+02 0.0045 18.9 4.0 40 28-68 51-93 (238)
406 PRK06466 acetolactate synthase 20.9 1.5E+02 0.0033 23.2 3.7 29 37-65 66-100 (574)
407 PRK08305 spoVFB dipicolinate s 20.9 2.2E+02 0.0047 19.4 4.0 49 37-85 83-153 (196)
408 TIGR01275 ACC_deam_rel pyridox 20.9 2.7E+02 0.0059 19.8 4.7 50 38-87 55-111 (311)
409 PTZ00468 phosphofructokinase f 20.7 1.4E+02 0.0031 26.4 3.6 35 33-67 795-843 (1328)
410 PRK09107 acetolactate synthase 20.7 1.5E+02 0.0033 23.4 3.6 29 37-65 73-107 (595)
411 cd00281 DAP_dppA Peptidase M55 20.7 2.8E+02 0.006 19.9 4.6 19 54-74 142-160 (265)
412 PRK06553 lipid A biosynthesis 20.7 3.3E+02 0.0071 19.5 6.0 7 58-64 156-162 (308)
413 COG0614 FepB ABC-type Fe3+-hyd 20.4 2.4E+02 0.0052 19.6 4.4 31 37-67 114-146 (319)
414 PRK06965 acetolactate synthase 20.4 1.5E+02 0.0033 23.3 3.5 29 37-65 83-117 (587)
415 PRK13932 stationary phase surv 20.4 1.2E+02 0.0026 21.6 2.7 21 46-66 113-133 (257)
416 PF06204 CBM_X: Putative carbo 20.4 51 0.0011 18.2 0.7 22 28-49 25-46 (66)
417 PRK07449 2-succinyl-5-enolpyru 20.3 1.4E+02 0.0031 23.2 3.4 28 38-65 72-105 (568)
418 COG0371 GldA Glycerol dehydrog 20.3 1.7E+02 0.0038 21.9 3.7 31 37-67 83-117 (360)
419 PRK07525 sulfoacetaldehyde ace 20.3 1.5E+02 0.0033 23.3 3.5 29 37-65 67-101 (588)
420 PRK11269 glyoxylate carboligas 20.2 1.6E+02 0.0034 23.2 3.6 28 38-65 68-101 (591)
421 TIGR00087 surE 5'/3'-nucleotid 20.2 1.2E+02 0.0026 21.3 2.7 21 46-66 108-128 (244)
422 PRK08979 acetolactate synthase 20.1 1.6E+02 0.0034 23.1 3.6 29 37-65 66-100 (572)
423 cd08173 Gro1PDH Sn-glycerol-1- 20.0 1.6E+02 0.0034 21.4 3.4 30 37-67 77-111 (339)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.95 E-value=5.5e-28 Score=180.56 Aligned_cols=96 Identities=40% Similarity=0.664 Sum_probs=84.2
Q ss_pred cCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHH
Q psy10599 17 TTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l 96 (112)
.+++|+.+.+|+||.++|.|+++++||||||+||+.||+++|+|+|++|+++||+.||.++++.|+|+.++..+++.+++
T Consensus 320 ~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l 399 (500)
T PF00201_consen 320 NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEEL 399 (500)
T ss_dssp HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHH
T ss_pred cccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHhcCcccccC
Q psy10599 97 RRKVHQVLYEPKYVGN 112 (112)
Q Consensus 97 ~~~l~~~l~~~~~~~~ 112 (112)
.++|+++|+|++|++|
T Consensus 400 ~~ai~~vl~~~~y~~~ 415 (500)
T PF00201_consen 400 RAAIREVLENPSYKEN 415 (500)
T ss_dssp HHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHhhhHHHHH
Confidence 9999999999999864
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.94 E-value=4.7e-27 Score=176.52 Aligned_cols=96 Identities=31% Similarity=0.360 Sum_probs=92.3
Q ss_pred cCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHH
Q psy10599 17 TTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l 96 (112)
..|+|+.+.+|+||.++|.|+++++||||||.||+.||+++|+|+|++|.++||+.||.+++++|+|+.++..+++.++|
T Consensus 343 ~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l 422 (507)
T PHA03392 343 NLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQL 422 (507)
T ss_pred cCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHhcCcccccC
Q psy10599 97 RRKVHQVLYEPKYVGN 112 (112)
Q Consensus 97 ~~~l~~~l~~~~~~~~ 112 (112)
.++|+++++|++|+++
T Consensus 423 ~~ai~~vl~~~~y~~~ 438 (507)
T PHA03392 423 VLAIVDVIENPKYRKN 438 (507)
T ss_pred HHHHHHHhCCHHHHHH
Confidence 9999999999999874
No 3
>PLN02208 glycosyltransferase family protein
Probab=99.90 E-value=8.7e-24 Score=156.65 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=82.1
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHH-cCceeeecCCC---CCHHH
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE-EGYGLMVDFDV---FDYEE 95 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~-~g~g~~l~~~~---~~~~~ 95 (112)
.|+.+.+|+||.++|.|+++.+||||||+||++|++++|+|+|.+|++.||+.||+++++ +|+|+.+..++ ++.++
T Consensus 311 ~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~ 390 (442)
T PLN02208 311 RGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKES 390 (442)
T ss_pred CCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHH
Confidence 578888999999999999999999999999999999999999999999999999998776 89999997544 89999
Q ss_pred HHHHHHHHhcCcc
Q psy10599 96 LRRKVHQVLYEPK 108 (112)
Q Consensus 96 l~~~l~~~l~~~~ 108 (112)
+.++|++++++++
T Consensus 391 l~~ai~~~m~~~~ 403 (442)
T PLN02208 391 LSNAIKSVMDKDS 403 (442)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999997653
No 4
>PLN03004 UDP-glycosyltransferase
Probab=99.90 E-value=7.7e-24 Score=157.16 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=85.7
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHH-cCceeeecCC---CCCHHH
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE-EGYGLMVDFD---VFDYEE 95 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~-~g~g~~l~~~---~~~~~~ 95 (112)
.|+.+.+|+||.++|.|+++.+||||||+||++|++++|+|+|.+|.+.||+.||+++++ .|+|+.++.+ ..+.++
T Consensus 334 ~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~ 413 (451)
T PLN03004 334 KGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTE 413 (451)
T ss_pred CcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHH
Confidence 588889999999999999999999999999999999999999999999999999999975 7999999743 468999
Q ss_pred HHHHHHHHhcCcccccC
Q psy10599 96 LRRKVHQVLYEPKYVGN 112 (112)
Q Consensus 96 l~~~l~~~l~~~~~~~~ 112 (112)
|.+++++++.+++||++
T Consensus 414 l~~av~~vm~~~~~r~~ 430 (451)
T PLN03004 414 VEKRVQEIIGECPVRER 430 (451)
T ss_pred HHHHHHHHhcCHHHHHH
Confidence 99999999998888763
No 5
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.90 E-value=2.6e-24 Score=160.94 Aligned_cols=95 Identities=26% Similarity=0.369 Sum_probs=84.9
Q ss_pred CCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHH-HHHHcCceeeecC--------
Q psy10599 18 TAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ-KAEEEGYGLMVDF-------- 88 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~-~~~~~g~g~~l~~-------- 88 (112)
.++|..+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|+++||+.||. .++++|+|+.+..
T Consensus 340 ~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~ 419 (481)
T PLN02554 340 TKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLA 419 (481)
T ss_pred hccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccc
Confidence 4567788899999999999999999999999999999999999999999999999995 4778999999853
Q ss_pred ---CCCCHHHHHHHHHHHhc-CcccccC
Q psy10599 89 ---DVFDYEELRRKVHQVLY-EPKYVGN 112 (112)
Q Consensus 89 ---~~~~~~~l~~~l~~~l~-~~~~~~~ 112 (112)
..++.+++.++|+++|. +++||++
T Consensus 420 ~~~~~~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 420 GEMETVTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred cccCeEcHHHHHHHHHHHhcCCHHHHHH
Confidence 35789999999999996 6777753
No 6
>PLN02670 transferase, transferring glycosyl groups
Probab=99.90 E-value=9.6e-24 Score=157.33 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=83.7
Q ss_pred cEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC----CCCHHHH
Q psy10599 21 VYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD----VFDYEEL 96 (112)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~----~~~~~~l 96 (112)
.+.+.+|+||.++|.|+++.+||||||+||++|++++|+|+|.+|.+.||+.||.++++.|+|+.+... .++.+++
T Consensus 340 G~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i 419 (472)
T PLN02670 340 GMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSV 419 (472)
T ss_pred CeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHH
Confidence 366789999999999999999999999999999999999999999999999999999999999999642 3789999
Q ss_pred HHHHHHHhcCc---ccccC
Q psy10599 97 RRKVHQVLYEP---KYVGN 112 (112)
Q Consensus 97 ~~~l~~~l~~~---~~~~~ 112 (112)
.++|+++|.++ +||++
T Consensus 420 ~~av~~vm~~~~g~~~r~~ 438 (472)
T PLN02670 420 AESVRLAMVDDAGEEIRDK 438 (472)
T ss_pred HHHHHHHhcCcchHHHHHH
Confidence 99999999776 57653
No 7
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-23 Score=154.75 Aligned_cols=95 Identities=29% Similarity=0.466 Sum_probs=91.1
Q ss_pred hccCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHH
Q psy10599 15 CKTTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYE 94 (112)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~ 94 (112)
....|.|+++.+|+|+..++ +++|+||||||+||++||+++|+|++++|...||+.||.++++.|+|+.++.+.++.+
T Consensus 279 ~~~~p~n~~v~~~~p~~~~l--~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~ 356 (406)
T COG1819 279 LVNVPDNVIVADYVPQLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEE 356 (406)
T ss_pred cccCCCceEEecCCCHHHHh--hhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHH
Confidence 45788999999999999999 8999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHhcCccccc
Q psy10599 95 ELRRKVHQVLYEPKYVG 111 (112)
Q Consensus 95 ~l~~~l~~~l~~~~~~~ 111 (112)
.|.++|+++|.+++|++
T Consensus 357 ~l~~av~~vL~~~~~~~ 373 (406)
T COG1819 357 RLRAAVNEVLADDSYRR 373 (406)
T ss_pred HHHHHHHHHhcCHHHHH
Confidence 99999999999998876
No 8
>PLN02562 UDP-glycosyltransferase
Probab=99.89 E-value=1.3e-23 Score=156.02 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=85.7
Q ss_pred CCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHH-cCceeeecCCCCCHHHH
Q psy10599 18 TAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE-EGYGLMVDFDVFDYEEL 96 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~-~g~g~~l~~~~~~~~~l 96 (112)
.++|+.+.+|+||.++|.|+++.+||||||+||++|++++|+|+|++|.++||+.||+++++ .|+|+.+. +.+.+++
T Consensus 326 ~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l 403 (448)
T PLN02562 326 VSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEV 403 (448)
T ss_pred hccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999986 58888874 5789999
Q ss_pred HHHHHHHhcCcccccC
Q psy10599 97 RRKVHQVLYEPKYVGN 112 (112)
Q Consensus 97 ~~~l~~~l~~~~~~~~ 112 (112)
.++|+++|.+++||++
T Consensus 404 ~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 404 EEGLRKVMEDSGMGER 419 (448)
T ss_pred HHHHHHHhCCHHHHHH
Confidence 9999999998888864
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.89 E-value=2.6e-23 Score=154.44 Aligned_cols=90 Identities=28% Similarity=0.325 Sum_probs=83.5
Q ss_pred cCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHc-CceeeecCCCCCHHH
Q psy10599 17 TTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDYEE 95 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~-g~g~~l~~~~~~~~~ 95 (112)
+.++|..+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|++.||+.||+++++. |+|+.+. +.+++++
T Consensus 321 r~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~ 399 (451)
T PLN02410 321 IISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGA 399 (451)
T ss_pred hccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999865 9999997 5789999
Q ss_pred HHHHHHHHhcCc
Q psy10599 96 LRRKVHQVLYEP 107 (112)
Q Consensus 96 l~~~l~~~l~~~ 107 (112)
+.++|+++|.++
T Consensus 400 v~~av~~lm~~~ 411 (451)
T PLN02410 400 VERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHcCC
Confidence 999999999775
No 10
>PLN02207 UDP-glycosyltransferase
Probab=99.89 E-value=3.7e-23 Score=154.09 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=83.8
Q ss_pred CCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHH-cCceeeecC-------C
Q psy10599 18 TAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE-EGYGLMVDF-------D 89 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~-~g~g~~l~~-------~ 89 (112)
.++|..+.+|+||.++|.|+++++||||||+||++|++++|+|+|.+|+++||+.||+++++ +|+|+.+.. +
T Consensus 330 ~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~ 409 (468)
T PLN02207 330 VSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDE 409 (468)
T ss_pred cCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCC
Confidence 55778889999999999999999999999999999999999999999999999999998876 899987631 2
Q ss_pred CCCHHHHHHHHHHHhc--CcccccC
Q psy10599 90 VFDYEELRRKVHQVLY--EPKYVGN 112 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~--~~~~~~~ 112 (112)
..+.++|.++|+++|. +++||+|
T Consensus 410 ~v~~e~i~~av~~vm~~~~~~~r~~ 434 (468)
T PLN02207 410 IVNANEIETAIRCVMNKDNNVVRKR 434 (468)
T ss_pred cccHHHHHHHHHHHHhcchHHHHHH
Confidence 3588999999999997 5677653
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.88 E-value=1.6e-22 Score=150.03 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=82.3
Q ss_pred CCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHc-CceeeecCC----CCCH
Q psy10599 19 AAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFD----VFDY 93 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~-g~g~~l~~~----~~~~ 93 (112)
++|+.+.+|+||.++|.|+++.+||||||+||++|++++|+|+|++|.+.||+.|+.++++. |+|+.+..+ .++.
T Consensus 316 ~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~ 395 (449)
T PLN02173 316 KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKR 395 (449)
T ss_pred CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccH
Confidence 57889999999999999999999999999999999999999999999999999999999864 999888532 2589
Q ss_pred HHHHHHHHHHhcCccc
Q psy10599 94 EELRRKVHQVLYEPKY 109 (112)
Q Consensus 94 ~~l~~~l~~~l~~~~~ 109 (112)
+++.++++++|.++++
T Consensus 396 e~v~~av~~vm~~~~~ 411 (449)
T PLN02173 396 EEIEFSIKEVMEGEKS 411 (449)
T ss_pred HHHHHHHHHHhcCChH
Confidence 9999999999977643
No 12
>PLN02210 UDP-glucosyl transferase
Probab=99.88 E-value=1e-22 Score=151.51 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=81.5
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHH-cCceeeecC----CCCCHH
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE-EGYGLMVDF----DVFDYE 94 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~-~g~g~~l~~----~~~~~~ 94 (112)
++..+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|.+.||+.||+++++ .|+|+.+.. ..++++
T Consensus 324 ~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~ 403 (456)
T PLN02210 324 GQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVE 403 (456)
T ss_pred CCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHH
Confidence 555688999999999999999999999999999999999999999999999999999987 899999863 247999
Q ss_pred HHHHHHHHHhcCcc
Q psy10599 95 ELRRKVHQVLYEPK 108 (112)
Q Consensus 95 ~l~~~l~~~l~~~~ 108 (112)
+|.++++++|.+++
T Consensus 404 ~l~~av~~~m~~~~ 417 (456)
T PLN02210 404 EVERCIEAVTEGPA 417 (456)
T ss_pred HHHHHHHHHhcCch
Confidence 99999999997764
No 13
>PLN00414 glycosyltransferase family protein
Probab=99.88 E-value=1.9e-22 Score=149.65 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=79.9
Q ss_pred cEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHH-HcCceeeecCC---CCCHHHH
Q psy10599 21 VYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE-EEGYGLMVDFD---VFDYEEL 96 (112)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~-~~g~g~~l~~~---~~~~~~l 96 (112)
.+.+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|.+.||+.||++++ ..|+|+.+..+ .++++++
T Consensus 313 g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i 392 (446)
T PLN00414 313 GIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESL 392 (446)
T ss_pred CeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHH
Confidence 4566699999999999999999999999999999999999999999999999999996 68999999643 3799999
Q ss_pred HHHHHHHhcCcc
Q psy10599 97 RRKVHQVLYEPK 108 (112)
Q Consensus 97 ~~~l~~~l~~~~ 108 (112)
.++++++|.+++
T Consensus 393 ~~~v~~~m~~~~ 404 (446)
T PLN00414 393 RDTVKSVMDKDS 404 (446)
T ss_pred HHHHHHHhcCCh
Confidence 999999997653
No 14
>PLN02764 glycosyltransferase family protein
Probab=99.88 E-value=1.9e-22 Score=149.72 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=79.9
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHH-HcCceeeecCC---CCCHHH
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE-EEGYGLMVDFD---VFDYEE 95 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~-~~g~g~~l~~~---~~~~~~ 95 (112)
..+.+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|.+.||+.||++++ ..|+|+.+..+ .++.++
T Consensus 317 rG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~ 396 (453)
T PLN02764 317 RGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKES 396 (453)
T ss_pred CCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHH
Confidence 35677799999999999999999999999999999999999999999999999999996 58999887533 479999
Q ss_pred HHHHHHHHhcCc
Q psy10599 96 LRRKVHQVLYEP 107 (112)
Q Consensus 96 l~~~l~~~l~~~ 107 (112)
+.++++++|.++
T Consensus 397 i~~av~~vm~~~ 408 (453)
T PLN02764 397 LRDAINSVMKRD 408 (453)
T ss_pred HHHHHHHHhcCC
Confidence 999999999765
No 15
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.88 E-value=8.8e-23 Score=152.53 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=81.2
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHH-HHHcCceeeecC-------CCC
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQK-AEEEGYGLMVDF-------DVF 91 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~-~~~~g~g~~l~~-------~~~ 91 (112)
++..+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|++.||+.||.+ ++.+|+|+.+.. ..+
T Consensus 340 ~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~ 419 (475)
T PLN02167 340 GRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIV 419 (475)
T ss_pred cCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcc
Confidence 345678999999999999999999999999999999999999999999999999976 678999998853 246
Q ss_pred CHHHHHHHHHHHhcCc-cccc
Q psy10599 92 DYEELRRKVHQVLYEP-KYVG 111 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~-~~~~ 111 (112)
+.+++.++|+++|.++ .||+
T Consensus 420 ~~~~l~~av~~~m~~~~~~r~ 440 (475)
T PLN02167 420 KADEIAGAVRSLMDGEDVPRK 440 (475)
T ss_pred cHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999765 4554
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.88 E-value=1.3e-22 Score=151.83 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=80.7
Q ss_pred CCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHH---HcCceeee------cCC
Q psy10599 19 AAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE---EEGYGLMV------DFD 89 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~---~~g~g~~l------~~~ 89 (112)
+.|+.+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|.+.||+.||++++ +.|+++.. +..
T Consensus 344 ~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~ 423 (482)
T PLN03007 344 GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGD 423 (482)
T ss_pred cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccC
Confidence 568889999999999999999999999999999999999999999999999999999886 34555432 234
Q ss_pred CCCHHHHHHHHHHHhcCc---cccc
Q psy10599 90 VFDYEELRRKVHQVLYEP---KYVG 111 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~---~~~~ 111 (112)
.++.++|.++++++|.++ +||+
T Consensus 424 ~~~~~~l~~av~~~m~~~~~~~~r~ 448 (482)
T PLN03007 424 FISREKVEKAVREVIVGEEAEERRL 448 (482)
T ss_pred cccHHHHHHHHHHHhcCcHHHHHHH
Confidence 579999999999999887 6664
No 17
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.88 E-value=4.5e-22 Score=148.63 Aligned_cols=88 Identities=28% Similarity=0.350 Sum_probs=81.5
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHH-HcCceeeecC--CCCCHHHH
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE-EEGYGLMVDF--DVFDYEEL 96 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~-~~g~g~~l~~--~~~~~~~l 96 (112)
.++.+.+|+||.++|.|+++.+||||||+||+.|++++|+|+|.+|++.||+.||.+++ ++|+|+.++. ..++.+++
T Consensus 338 rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l 417 (481)
T PLN02992 338 RGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKI 417 (481)
T ss_pred CCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHH
Confidence 36888899999999999999999999999999999999999999999999999999994 8999999975 34899999
Q ss_pred HHHHHHHhcCc
Q psy10599 97 RRKVHQVLYEP 107 (112)
Q Consensus 97 ~~~l~~~l~~~ 107 (112)
.++|++++.++
T Consensus 418 ~~av~~vm~~~ 428 (481)
T PLN02992 418 EALVRKVMVEE 428 (481)
T ss_pred HHHHHHHhcCC
Confidence 99999999764
No 18
>PLN02555 limonoid glucosyltransferase
Probab=99.88 E-value=3.7e-22 Score=149.16 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=83.0
Q ss_pred cCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHc-Cceeeec-----CCC
Q psy10599 17 TTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVD-----FDV 90 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~-g~g~~l~-----~~~ 90 (112)
+.++|..+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|++.||+.|+.++++. |+|+.+. ...
T Consensus 334 ~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~ 413 (480)
T PLN02555 334 KAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKL 413 (480)
T ss_pred hcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCc
Confidence 4567888999999999999999999999999999999999999999999999999999999875 9999994 235
Q ss_pred CCHHHHHHHHHHHhcCc
Q psy10599 91 FDYEELRRKVHQVLYEP 107 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~ 107 (112)
++.+++.++|+++|.++
T Consensus 414 v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 414 ITREEVAECLLEATVGE 430 (480)
T ss_pred CcHHHHHHHHHHHhcCc
Confidence 78999999999999764
No 19
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.87 E-value=2.5e-22 Score=150.05 Aligned_cols=94 Identities=24% Similarity=0.185 Sum_probs=82.4
Q ss_pred CCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHH-HcCceeeecC---CCCCHH
Q psy10599 19 AAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE-EEGYGLMVDF---DVFDYE 94 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~-~~g~g~~l~~---~~~~~~ 94 (112)
..++.+.+|+||.++|.|+++++||||||+||++|++++|+|+|++|++.||+.||+++. .+|+|+.+.. ...+.+
T Consensus 342 ~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~ 421 (477)
T PLN02863 342 GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSD 421 (477)
T ss_pred cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHH
Confidence 446788899999999999999999999999999999999999999999999999999976 5799999853 235789
Q ss_pred HHHHHHHHHh-cCcccccC
Q psy10599 95 ELRRKVHQVL-YEPKYVGN 112 (112)
Q Consensus 95 ~l~~~l~~~l-~~~~~~~~ 112 (112)
++.+++++++ ++++||++
T Consensus 422 ~v~~~v~~~m~~~~~~r~~ 440 (477)
T PLN02863 422 ELARVFMESVSENQVERER 440 (477)
T ss_pred HHHHHHHHHhhccHHHHHH
Confidence 9999999988 56666653
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.87 E-value=3.4e-22 Score=148.56 Aligned_cols=92 Identities=28% Similarity=0.369 Sum_probs=80.9
Q ss_pred cCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHH-cCceeeec--CC-CCC
Q psy10599 17 TTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE-EGYGLMVD--FD-VFD 92 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~-~g~g~~l~--~~-~~~ 92 (112)
+.++|..+.+|+||.++|.|+++.+||||||+||++|++++|+|++.+|.+.||+.||.++++ +|+|+.+. .. ..+
T Consensus 324 ~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~ 403 (455)
T PLN02152 324 ELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVE 403 (455)
T ss_pred hccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCc
Confidence 356778889999999999999999999999999999999999999999999999999999987 46666653 22 358
Q ss_pred HHHHHHHHHHHhcCcc
Q psy10599 93 YEELRRKVHQVLYEPK 108 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~~ 108 (112)
.++|.++++++|+++.
T Consensus 404 ~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 404 RGEIRRCLEAVMEEKS 419 (455)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 9999999999997654
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.87 E-value=6.5e-22 Score=147.34 Aligned_cols=89 Identities=25% Similarity=0.292 Sum_probs=80.6
Q ss_pred CCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHH-cCceeeecC-----CCCC
Q psy10599 19 AAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE-EGYGLMVDF-----DVFD 92 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~-~g~g~~l~~-----~~~~ 92 (112)
++|..+.+|+||.++|.|+++++||||||+||++|++++|+|++++|.+.||+.||+++++ +|+|+.+.. ...+
T Consensus 322 ~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~ 401 (459)
T PLN02448 322 GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVG 401 (459)
T ss_pred cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCc
Confidence 4578889999999999999999999999999999999999999999999999999999987 588888752 2468
Q ss_pred HHHHHHHHHHHhcCc
Q psy10599 93 YEELRRKVHQVLYEP 107 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~ 107 (112)
+++|.++++++|.++
T Consensus 402 ~~~l~~av~~vl~~~ 416 (459)
T PLN02448 402 REEIAELVKRFMDLE 416 (459)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999764
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.87 E-value=4.8e-22 Score=144.79 Aligned_cols=92 Identities=24% Similarity=0.363 Sum_probs=84.8
Q ss_pred cCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHH
Q psy10599 17 TTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l 96 (112)
..++|+.+.+|+|+..+| +.||++|||||+||++|++++|+|+|++|...||+.||+++++.|+|+.+...+++.++|
T Consensus 285 ~~~~~v~~~~~~p~~~ll--~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l 362 (401)
T cd03784 285 DLPDNVRVVDFVPHDWLL--PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERL 362 (401)
T ss_pred CCCCceEEeCCCCHHHHh--hhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHH
Confidence 457899999999999999 779999999999999999999999999999999999999999999999998777899999
Q ss_pred HHHHHHHhcCcccc
Q psy10599 97 RRKVHQVLYEPKYV 110 (112)
Q Consensus 97 ~~~l~~~l~~~~~~ 110 (112)
.++++++++++.++
T Consensus 363 ~~al~~~l~~~~~~ 376 (401)
T cd03784 363 AAALRRLLDPPSRR 376 (401)
T ss_pred HHHHHHHhCHHHHH
Confidence 99999999865443
No 23
>PLN00164 glucosyltransferase; Provisional
Probab=99.86 E-value=1.6e-21 Score=145.88 Aligned_cols=89 Identities=27% Similarity=0.328 Sum_probs=79.5
Q ss_pred cEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHH-HcCceeeecCC-----CCCHH
Q psy10599 21 VYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE-EEGYGLMVDFD-----VFDYE 94 (112)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~-~~g~g~~l~~~-----~~~~~ 94 (112)
.+.+.+|+||.++|.|+++.+||||||+||++|++++|+|+|++|+++||+.||.++. .+|+|+.+..+ ..+.+
T Consensus 340 g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e 419 (480)
T PLN00164 340 GLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAA 419 (480)
T ss_pred CeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHH
Confidence 4667799999999999999999999999999999999999999999999999999875 58999998532 26899
Q ss_pred HHHHHHHHHhcCccc
Q psy10599 95 ELRRKVHQVLYEPKY 109 (112)
Q Consensus 95 ~l~~~l~~~l~~~~~ 109 (112)
+|.++|+++|.+++|
T Consensus 420 ~l~~av~~vm~~~~~ 434 (480)
T PLN00164 420 ELERAVRSLMGGGEE 434 (480)
T ss_pred HHHHHHHHHhcCCch
Confidence 999999999977653
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.86 E-value=1.5e-21 Score=142.27 Aligned_cols=95 Identities=31% Similarity=0.444 Sum_probs=88.1
Q ss_pred hccCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHH
Q psy10599 15 CKTTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYE 94 (112)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~ 94 (112)
....++|+.+.+|+|+.+++ +.+|++|||||+||+.|++++|+|+|++|...||..|+.++++.|+|+.+...+++.+
T Consensus 270 ~~~~~~~v~~~~~~p~~~ll--~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~ 347 (392)
T TIGR01426 270 LGELPPNVEVRQWVPQLEIL--KKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAE 347 (392)
T ss_pred hccCCCCeEEeCCCCHHHHH--hhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHH
Confidence 34567899999999999988 7799999999999999999999999999999999999999999999999987788999
Q ss_pred HHHHHHHHHhcCccccc
Q psy10599 95 ELRRKVHQVLYEPKYVG 111 (112)
Q Consensus 95 ~l~~~l~~~l~~~~~~~ 111 (112)
++.++|++++.+++|++
T Consensus 348 ~l~~ai~~~l~~~~~~~ 364 (392)
T TIGR01426 348 KLREAVLAVLSDPRYAE 364 (392)
T ss_pred HHHHHHHHHhcCHHHHH
Confidence 99999999999988765
No 25
>KOG1192|consensus
Probab=99.85 E-value=1.3e-21 Score=146.02 Aligned_cols=93 Identities=33% Similarity=0.430 Sum_probs=83.7
Q ss_pred CCcEEEecCCChhhh-cCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHH
Q psy10599 19 AAVYSIFDSFVHFSS-SAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR 97 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~-l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~ 97 (112)
++|+...+|+||.++ +.|+++++||||||+||++|++++|+|++++|.++||+.||..+++.|.+.++...+.+...+.
T Consensus 334 ~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~ 413 (496)
T KOG1192|consen 334 RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELL 413 (496)
T ss_pred cCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHH
Confidence 558888899999998 5899999999999999999999999999999999999999999999988888776666666699
Q ss_pred HHHHHHhcCccccc
Q psy10599 98 RKVHQVLYEPKYVG 111 (112)
Q Consensus 98 ~~l~~~l~~~~~~~ 111 (112)
+++.+++.+++|.+
T Consensus 414 ~~~~~il~~~~y~~ 427 (496)
T KOG1192|consen 414 EAIKEILENEEYKE 427 (496)
T ss_pred HHHHHHHcChHHHH
Confidence 99999999988865
No 26
>PLN03015 UDP-glucosyl transferase
Probab=99.84 E-value=1.2e-20 Score=140.61 Aligned_cols=84 Identities=26% Similarity=0.324 Sum_probs=77.7
Q ss_pred EEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHH-HHcCceeeec----CCCCCHHHH
Q psy10599 22 YSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKA-EEEGYGLMVD----FDVFDYEEL 96 (112)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~-~~~g~g~~l~----~~~~~~~~l 96 (112)
+.+.+|+||.++|.|+++.+||||||+||++|++++|+|++.+|.+.||+.||.++ +.+|+|+.+. ...++.+++
T Consensus 337 l~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i 416 (470)
T PLN03015 337 LVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEV 416 (470)
T ss_pred eEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHH
Confidence 66789999999999999999999999999999999999999999999999999998 5789999995 234789999
Q ss_pred HHHHHHHhc
Q psy10599 97 RRKVHQVLY 105 (112)
Q Consensus 97 ~~~l~~~l~ 105 (112)
.++|+++|.
T Consensus 417 ~~~v~~lm~ 425 (470)
T PLN03015 417 ASLVRKIVA 425 (470)
T ss_pred HHHHHHHHc
Confidence 999999995
No 27
>PLN02534 UDP-glycosyltransferase
Probab=99.81 E-value=9.4e-20 Score=136.59 Aligned_cols=87 Identities=26% Similarity=0.313 Sum_probs=78.0
Q ss_pred CCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHH-HcCceeeecC---------
Q psy10599 19 AAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE-EEGYGLMVDF--------- 88 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~-~~g~g~~l~~--------- 88 (112)
+.++.+.+|+||.++|.|+++.+||||||+||++|++++|+|+|++|.+.||+.|+++++ .+|+|+.+..
T Consensus 343 ~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~ 422 (491)
T PLN02534 343 GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDE 422 (491)
T ss_pred cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccccccc
Confidence 567888899999999999999999999999999999999999999999999999999986 5788887631
Q ss_pred ---C-CCCHHHHHHHHHHHhc
Q psy10599 89 ---D-VFDYEELRRKVHQVLY 105 (112)
Q Consensus 89 ---~-~~~~~~l~~~l~~~l~ 105 (112)
+ ..+++++.++|+++|.
T Consensus 423 ~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 423 ERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccCccCHHHHHHHHHHHhc
Confidence 1 2689999999999995
No 28
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.79 E-value=3.5e-20 Score=121.23 Aligned_cols=105 Identities=19% Similarity=0.301 Sum_probs=80.3
Q ss_pred cccchhhhhhhhc---cCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCcc----chHHHHHH
Q psy10599 4 WITMERHFWADCK---TTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFA----DQKQNGQK 76 (112)
Q Consensus 4 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~----dq~~na~~ 76 (112)
|++|+....+... ....++.+.+|.+.++-++ ..+|++|||||.+|++|+++.|+|+|++|... ||..|+..
T Consensus 36 v~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m-~~aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~ 114 (167)
T PF04101_consen 36 VQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELM-AAADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKE 114 (167)
T ss_dssp CCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHH-HHHSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHH
T ss_pred EEECCCcHHHHHHHHhccCCcEEEEechhhHHHHH-HHcCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHH
Confidence 5667554333222 2236899999999655444 79999999999999999999999999999987 99999999
Q ss_pred HHHcCceeeecCCCCCHHHHHHHHHHHhcCccc
Q psy10599 77 AEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 77 ~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~~ 109 (112)
+++.|+++.+.....+.+.|.++|.+++.++.+
T Consensus 115 ~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 115 LAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp HHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred HHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 999999999987777788899999999877654
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.73 E-value=1.4e-17 Score=120.54 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=84.7
Q ss_pred ccccchhhhhhhhccCCCcEEEecCC-ChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCc-----cchHHHHHH
Q psy10599 3 TWITMERHFWADCKTTAAVYSIFDSF-VHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLF-----ADQKQNGQK 76 (112)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~-----~dq~~na~~ 76 (112)
.|++|..++....... .++.+.+|+ +.+..++ +.+|++|||||++|+.|++++|+|+|++|+. .||..||.+
T Consensus 218 v~~~G~~~~~~~~~~~-~~~~~~~f~~~~m~~~~-~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~ 295 (352)
T PRK12446 218 VHLCGKGNLDDSLQNK-EGYRQFEYVHGELPDIL-AITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAES 295 (352)
T ss_pred EEEeCCchHHHHHhhc-CCcEEecchhhhHHHHH-HhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHH
Confidence 4788876544322222 355667887 5554333 7899999999999999999999999999984 589999999
Q ss_pred HHHcCceeeecCCCCCHHHHHHHHHHHhcCcc
Q psy10599 77 AEEEGYGLMVDFDVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 77 ~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~ 108 (112)
+++.|++..+..++++++.|.+++.+++.|++
T Consensus 296 l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~ 327 (352)
T PRK12446 296 FERQGYASVLYEEDVTVNSLIKHVEELSHNNE 327 (352)
T ss_pred HHHCCCEEEcchhcCCHHHHHHHHHHHHcCHH
Confidence 99999999998888999999999999998763
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=2.6e-17 Score=119.34 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=86.9
Q ss_pred ccccchhhhhhhhccCC-Cc-EEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCc----cchHHHHHH
Q psy10599 3 TWITMERHFWADCKTTA-AV-YSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLF----ADQKQNGQK 76 (112)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~----~dq~~na~~ 76 (112)
.|++|+..+.+...... .+ +.+..|++.+..++ .++|++||++|++|+.|+++.|+|.|++|+. +||..||..
T Consensus 216 ~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~-~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~ 294 (357)
T COG0707 216 IHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALL-AAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF 294 (357)
T ss_pred EEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHH-HhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHH
Confidence 46788765332222221 12 88999999887555 7999999999999999999999999999974 489999999
Q ss_pred HHHcCceeeecCCCCCHHHHHHHHHHHhcCcc
Q psy10599 77 AEEEGYGLMVDFDVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 77 ~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~ 108 (112)
+++.|+|.+++..+++.+++.+.|.+++++++
T Consensus 295 l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~ 326 (357)
T COG0707 295 LEKAGAALVIRQSELTPEKLAELILRLLSNPE 326 (357)
T ss_pred HHhCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999998743
No 31
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.69 E-value=1.4e-16 Score=112.90 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=75.9
Q ss_pred CCCcEEEecCC-C-hhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC--ccchHHHHHHHHHcCceeeecCCCCCH
Q psy10599 18 TAAVYSIFDSF-V-HFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL--FADQKQNGQKAEEEGYGLMVDFDVFDY 93 (112)
Q Consensus 18 ~~~~~~~~~~~-~-~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~--~~dq~~na~~~~~~g~g~~l~~~~~~~ 93 (112)
.++|+.+.+|. + ..++| +.||++|++||++|++|+++.|+|+|++|. ..||..||..+++.|+|+.++.+++++
T Consensus 230 ~~~ni~~~~~~~~~~~~~m--~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~ 307 (318)
T PF13528_consen 230 RPGNIHVRPFSTPDFAELM--AAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTP 307 (318)
T ss_pred cCCCEEEeecChHHHHHHH--HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCH
Confidence 36789999986 4 45677 789999999999999999999999999998 689999999999999999999889999
Q ss_pred HHHHHHHHHH
Q psy10599 94 EELRRKVHQV 103 (112)
Q Consensus 94 ~~l~~~l~~~ 103 (112)
+.|.+.|+++
T Consensus 308 ~~l~~~l~~~ 317 (318)
T PF13528_consen 308 ERLAEFLERL 317 (318)
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.68 E-value=2.7e-16 Score=112.37 Aligned_cols=89 Identities=20% Similarity=0.333 Sum_probs=76.0
Q ss_pred cCCCcEEEecCCC-h-hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCcc--chHHHHHHHHHcCceeeecCCCCC
Q psy10599 17 TTAAVYSIFDSFV-H-FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFA--DQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 17 ~~~~~~~~~~~~~-~-~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~--dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
..++|+.+.+|.+ . .+.| +.||++|||||++|++|++++|+|++++|..+ ||..||..+++.|+|+.++..++
T Consensus 226 ~~~~~v~~~~~~~~~~~~~l--~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~- 302 (321)
T TIGR00661 226 SYNENVEIRRITTDNFKELI--KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL- 302 (321)
T ss_pred ccCCCEEEEECChHHHHHHH--HhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-
Confidence 4567899999987 3 3556 78999999999999999999999999999854 89999999999999999986554
Q ss_pred HHHHHHHHHHHhcCcccc
Q psy10599 93 YEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~~~~ 110 (112)
++.+++.+++.|+.|.
T Consensus 303 --~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 303 --RLLEAILDIRNMKRYK 318 (321)
T ss_pred --HHHHHHHhcccccccc
Confidence 6677777888888775
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.46 E-value=4.3e-13 Score=96.51 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=78.5
Q ss_pred cEEEecCCCh-hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC----ccchHHHHHHHHHcCceeeecCCCCCHHH
Q psy10599 21 VYSIFDSFVH-FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL----FADQKQNGQKAEEEGYGLMVDFDVFDYEE 95 (112)
Q Consensus 21 ~~~~~~~~~~-~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~----~~dq~~na~~~~~~g~g~~l~~~~~~~~~ 95 (112)
++.+.+|++. .+++ +.+|++|+++|.++++|++++|+|+|.+|. .++|..|+..+.+.|.|..+..++++++.
T Consensus 236 ~v~~~g~~~~~~~~~--~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~ 313 (357)
T PRK00726 236 NAEVVPFIDDMAAAY--AAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEK 313 (357)
T ss_pred cEEEeehHhhHHHHH--HhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHH
Confidence 4788899854 4667 789999999999999999999999999986 46899999999999999999877778999
Q ss_pred HHHHHHHHhcCccccc
Q psy10599 96 LRRKVHQVLYEPKYVG 111 (112)
Q Consensus 96 l~~~l~~~l~~~~~~~ 111 (112)
|.+++.++++++++++
T Consensus 314 l~~~i~~ll~~~~~~~ 329 (357)
T PRK00726 314 LAEKLLELLSDPERLE 329 (357)
T ss_pred HHHHHHHHHcCHHHHH
Confidence 9999999999877653
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.36 E-value=3.2e-12 Score=91.70 Aligned_cols=89 Identities=25% Similarity=0.293 Sum_probs=80.0
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCc---cchHHHHHHHHHcCceeeecCCCCCHHHH
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLF---ADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~---~dq~~na~~~~~~g~g~~l~~~~~~~~~l 96 (112)
+++.+..|..++..|. ..++.+|+.||+||++|.+++|+|.+++|+. .||...|.+++++|+.-++.+++++++.+
T Consensus 277 p~i~I~~f~~~~~~ll-~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~L 355 (400)
T COG4671 277 PHISIFEFRNDFESLL-AGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNL 355 (400)
T ss_pred CCeEEEEhhhhHHHHH-HhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHH
Confidence 6899999998765444 6899999999999999999999999999984 59999999999999999999999999999
Q ss_pred HHHHHHHhcCccc
Q psy10599 97 RRKVHQVLYEPKY 109 (112)
Q Consensus 97 ~~~l~~~l~~~~~ 109 (112)
+++|...+.-|+.
T Consensus 356 a~al~~~l~~P~~ 368 (400)
T COG4671 356 ADALKAALARPSP 368 (400)
T ss_pred HHHHHhcccCCCC
Confidence 9999999875543
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.33 E-value=1e-11 Score=88.78 Aligned_cols=90 Identities=18% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCcEEEecCCCh-hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC----ccchHHHHHHHHHcCceeeecCCCCCH
Q psy10599 19 AAVYSIFDSFVH-FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL----FADQKQNGQKAEEEGYGLMVDFDVFDY 93 (112)
Q Consensus 19 ~~~~~~~~~~~~-~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~----~~dq~~na~~~~~~g~g~~l~~~~~~~ 93 (112)
.+|+.+.+|+.. .+++ ..+|++|+++|.+++.||+++|+|+|.+|. .++|..|++.+.+.|.|..+...+.+.
T Consensus 234 ~~~v~~~g~~~~~~~~l--~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~ 311 (350)
T cd03785 234 GVNYEVFPFIDDMAAAY--AAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTP 311 (350)
T ss_pred CCCeEEeehhhhHHHHH--HhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCH
Confidence 468999999844 4566 789999999999999999999999999985 468999999999999999997655689
Q ss_pred HHHHHHHHHHhcCcccc
Q psy10599 94 EELRRKVHQVLYEPKYV 110 (112)
Q Consensus 94 ~~l~~~l~~~l~~~~~~ 110 (112)
+++.+++.+++.+++.+
T Consensus 312 ~~l~~~i~~ll~~~~~~ 328 (350)
T cd03785 312 ERLAAALLELLSDPERL 328 (350)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 99999999999876543
No 36
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.28 E-value=1.3e-11 Score=90.48 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=74.4
Q ss_pred CCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEee-cCccchHHHHHHHHHcCceeeecCCCCCHHHHH
Q psy10599 19 AAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV-PLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR 97 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v-P~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~ 97 (112)
.+++.+.+|++.+.-++ ..+|++|+.+|..|+.||++.|+|+|+. |..++|..|+..+.+.|+|+... +.+++.
T Consensus 255 ~~~v~~~G~~~~~~~~~-~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~ 329 (391)
T PRK13608 255 NENVLILGYTKHMNEWM-ASSQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAI 329 (391)
T ss_pred CCCeEEEeccchHHHHH-HhhhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHH
Confidence 35788999998765343 7899999999999999999999999998 77778889999999999998865 688899
Q ss_pred HHHHHHhcCcccc
Q psy10599 98 RKVHQVLYEPKYV 110 (112)
Q Consensus 98 ~~l~~~l~~~~~~ 110 (112)
++|.++++|++.+
T Consensus 330 ~~i~~ll~~~~~~ 342 (391)
T PRK13608 330 KIVASLTNGNEQL 342 (391)
T ss_pred HHHHHHhcCHHHH
Confidence 9999999876543
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.23 E-value=5.1e-11 Score=86.55 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=74.5
Q ss_pred cCCCcEEEecCCChh-hhcCCCCccEEEeCCChhHHHHHHHhCCCeEee-cCccchHHHHHHHHHcCceeeecCCCCCHH
Q psy10599 17 TTAAVYSIFDSFVHF-SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV-PLFADQKQNGQKAEEEGYGLMVDFDVFDYE 94 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~-~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v-P~~~dq~~na~~~~~~g~g~~l~~~~~~~~ 94 (112)
+.+.++.+.+|+++. +++ ..+|++|+.+|..|+.||+++|+|+|+. |..+++..|+..+.+.|+++... +.+
T Consensus 253 ~~~~~v~~~g~~~~~~~l~--~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~ 326 (380)
T PRK13609 253 TNPDALKVFGYVENIDELF--RVTSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDE 326 (380)
T ss_pred cCCCcEEEEechhhHHHHH--HhccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHH
Confidence 345689999999875 556 6899999999999999999999999985 77778889999999999988753 678
Q ss_pred HHHHHHHHHhcCcccc
Q psy10599 95 ELRRKVHQVLYEPKYV 110 (112)
Q Consensus 95 ~l~~~l~~~l~~~~~~ 110 (112)
++.+++.++++|++.+
T Consensus 327 ~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 327 EVFAKTEALLQDDMKL 342 (380)
T ss_pred HHHHHHHHHHCCHHHH
Confidence 9999999999887643
No 38
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.15 E-value=1.5e-10 Score=82.75 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=69.2
Q ss_pred ChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCc---cchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhc
Q psy10599 29 VHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLF---ADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 29 ~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~---~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
+..+++ +.+|++|+++|.+++.|++++|+|+|.+|.. .+|..|++.+.+.+.|..+...+.++++|.+++.++++
T Consensus 243 ~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 243 NMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 345667 7899999999988999999999999999863 57888999999999999987766679999999999998
Q ss_pred Ccccc
Q psy10599 106 EPKYV 110 (112)
Q Consensus 106 ~~~~~ 110 (112)
|++++
T Consensus 321 ~~~~~ 325 (348)
T TIGR01133 321 DPANL 325 (348)
T ss_pred CHHHH
Confidence 87654
No 39
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.14 E-value=1.5e-10 Score=84.57 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=71.3
Q ss_pred CcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC-ccchHHHHHHHHHcCceeeecCCCCCHHHHHH
Q psy10599 20 AVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL-FADQKQNGQKAEEEGYGLMVDFDVFDYEELRR 98 (112)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~-~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~ 98 (112)
.++.+.+|++++.-++ ..+|++|+.+|.+|+.||++.|+|+|+.+. .+.+..|+..+.+.|.|+.+. ++++|.+
T Consensus 265 ~~v~~~G~~~~~~~l~-~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~----~~~~la~ 339 (382)
T PLN02605 265 IPVKVRGFVTNMEEWM-GACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSE----SPKEIAR 339 (382)
T ss_pred CCeEEEeccccHHHHH-HhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecC----CHHHHHH
Confidence 4688999999766555 689999999999999999999999999965 455567999999999998752 7899999
Q ss_pred HHHHHhcC-ccc
Q psy10599 99 KVHQVLYE-PKY 109 (112)
Q Consensus 99 ~l~~~l~~-~~~ 109 (112)
++.+++.+ ++.
T Consensus 340 ~i~~ll~~~~~~ 351 (382)
T PLN02605 340 IVAEWFGDKSDE 351 (382)
T ss_pred HHHHHHcCCHHH
Confidence 99999987 543
No 40
>KOG3349|consensus
Probab=99.08 E-value=5.7e-10 Score=71.63 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=53.7
Q ss_pred EEEecCCCh-hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC----ccchHHHHHHHHHcCceeeec
Q psy10599 22 YSIFDSFVH-FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL----FADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 22 ~~~~~~~~~-~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~----~~dq~~na~~~~~~g~g~~l~ 87 (112)
+..+.|-|. .+.+ ..+|++|+|+|+||++|.+..|+|.|+|+. .++|.+-|..+++.|.=..-.
T Consensus 65 id~y~f~psl~e~I--~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ 133 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDI--RSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCT 133 (170)
T ss_pred EEEEecCccHHHHH--hhccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEee
Confidence 455667776 4445 569999999999999999999999999986 589999999999998766544
No 41
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.05 E-value=2.1e-10 Score=80.92 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=50.4
Q ss_pred CCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHH
Q psy10599 19 AAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKA 77 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~ 77 (112)
..|+.+..|++++.-++ ..+|++|++|| +|++|+++.|+|+|++|...+|..||+.+
T Consensus 223 ~~~i~~~~~~~~m~~lm-~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 223 YPNIILFIDVENMAELM-NEADLAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred CCCEEEEeCHHHHHHHH-HHCCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 45899999999875444 79999999999 89999999999999999999999999753
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.00 E-value=1.1e-09 Score=80.76 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=66.2
Q ss_pred EEEecCCChh-hhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHc----CceeeecCCCCCHHHH
Q psy10599 22 YSIFDSFVHF-SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE----GYGLMVDFDVFDYEEL 96 (112)
Q Consensus 22 ~~~~~~~~~~-~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~----g~g~~l~~~~~~~~~l 96 (112)
+.+..|...+ +++ ..+|++|+.+|..| .|++..|+|+|++|...+|. |+..+++. |.++.+.. .+.+.+
T Consensus 281 ~~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l 354 (396)
T TIGR03492 281 LEVLLGRGAFAEIL--HWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQA 354 (396)
T ss_pred eEEEechHhHHHHH--HhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHH
Confidence 5555665544 455 78999999999877 99999999999999888887 99887764 77777753 356899
Q ss_pred HHHHHHHhcCcccc
Q psy10599 97 RRKVHQVLYEPKYV 110 (112)
Q Consensus 97 ~~~l~~~l~~~~~~ 110 (112)
.+++.++++|++.+
T Consensus 355 ~~~l~~ll~d~~~~ 368 (396)
T TIGR03492 355 AQVVRQLLADPELL 368 (396)
T ss_pred HHHHHHHHcCHHHH
Confidence 99999999887543
No 43
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.83 E-value=2.5e-09 Score=78.50 Aligned_cols=74 Identities=14% Similarity=-0.016 Sum_probs=65.3
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEee----cCcc---------chHHHHHHHHHcCceeeecCCCCCHHHHH
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV----PLFA---------DQKQNGQKAEEEGYGLMVDFDVFDYEELR 97 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v----P~~~---------dq~~na~~~~~~g~g~~l~~~~~~~~~l~ 97 (112)
.+++ ..+|++|+.+|..|+ |++++|+|+|++ |+.. .|..|+..+.+.++...+-.++++++.|.
T Consensus 262 ~~~l--~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~ 338 (385)
T TIGR00215 262 RKAM--FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLA 338 (385)
T ss_pred HHHH--HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHH
Confidence 3456 789999999999988 999999999999 7642 37789999999999999888889999999
Q ss_pred HHHHHHhcCc
Q psy10599 98 RKVHQVLYEP 107 (112)
Q Consensus 98 ~~l~~~l~~~ 107 (112)
+.+.+++.|+
T Consensus 339 ~~~~~ll~~~ 348 (385)
T TIGR00215 339 IALLLLLENG 348 (385)
T ss_pred HHHHHHhcCC
Confidence 9999999888
No 44
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=6.2e-07 Score=56.96 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=53.8
Q ss_pred EEEecCC--ChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCc--------cchHHHHHHHHHcCceeeecC
Q psy10599 22 YSIFDSF--VHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLF--------ADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 22 ~~~~~~~--~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~--------~dq~~na~~~~~~g~g~~l~~ 88 (112)
.++++|. +.+.-+.| .+.++|+|+|.||++.++..++|.|++|.. .+|..-|..+.+.+.-+...+
T Consensus 48 l~v~~F~~~~kiQsli~-darIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp 123 (161)
T COG5017 48 LRVYGFDKEEKIQSLIH-DARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP 123 (161)
T ss_pred cEEEeechHHHHHHHhh-cceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC
Confidence 4566654 44554554 677999999999999999999999999973 589999999999988777764
No 45
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=3.3e-07 Score=64.56 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=75.0
Q ss_pred CCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHH
Q psy10599 18 TAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR 97 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~ 97 (112)
..+|+.++.....+.-|| ..||+.|+.||. |++|+++.|+|.+++|....|..-|..++..|+...+... +.+....
T Consensus 208 ~~~~i~~~~~~~dma~LM-ke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~ 284 (318)
T COG3980 208 KYPNINLYIDTNDMAELM-KEADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKD 284 (318)
T ss_pred hCCCeeeEecchhHHHHH-Hhcchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHH
Confidence 345788888888787666 689999999985 7889999999999999999999999999999998887643 5666677
Q ss_pred HHHHHHhcCccccc
Q psy10599 98 RKVHQVLYEPKYVG 111 (112)
Q Consensus 98 ~~l~~~l~~~~~~~ 111 (112)
..+.++..|+..|.
T Consensus 285 ~~~~~i~~d~~~rk 298 (318)
T COG3980 285 YEILQIQKDYARRK 298 (318)
T ss_pred HHHHHhhhCHHHhh
Confidence 77777777776654
No 46
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.46 E-value=1.4e-07 Score=68.47 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=55.1
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCcc--------chHHH-----HHHHHHcCceeeecCCCCCHHHHH
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFA--------DQKQN-----GQKAEEEGYGLMVDFDVFDYEELR 97 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~--------dq~~n-----a~~~~~~g~g~~l~~~~~~~~~l~ 97 (112)
..++ ..+|++|+.+|.+++ |++++|+|+|++|... +|..| +..+.+.+++..+.....+++++.
T Consensus 256 ~~~~--~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 332 (380)
T PRK00025 256 REAM--AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLA 332 (380)
T ss_pred HHHH--HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHH
Confidence 3455 789999999999887 9999999999995432 22222 233333333433444566899999
Q ss_pred HHHHHHhcCccccc
Q psy10599 98 RKVHQVLYEPKYVG 111 (112)
Q Consensus 98 ~~l~~~l~~~~~~~ 111 (112)
+.+.++++|++.++
T Consensus 333 ~~i~~ll~~~~~~~ 346 (380)
T PRK00025 333 RALLPLLADGARRQ 346 (380)
T ss_pred HHHHHHhcCHHHHH
Confidence 99999999887653
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.37 E-value=1.6e-06 Score=61.17 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=65.9
Q ss_pred cCCCcEEEecCCChhh---hcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 17 TTAAVYSIFDSFVHFS---SSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
....++.+.+++++.+ ++ ..+|+++..+. .++++||+++|+|+|..+..+ +.+.++..+.|.....
T Consensus 244 ~~~~~v~~~g~~~~~~~~~~~--~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~- 316 (364)
T cd03814 244 ARYPNVHFLGFLDGEELAAAY--ASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEP- 316 (364)
T ss_pred ccCCcEEEEeccCHHHHHHHH--HhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCC-
Confidence 4567899999988654 56 68999997764 478999999999999987643 3445566678887764
Q ss_pred CCCHHHHHHHHHHHhcCcccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~~ 110 (112)
.+.+++.+++.+++.+++.+
T Consensus 317 -~~~~~l~~~i~~l~~~~~~~ 336 (364)
T cd03814 317 -GDAEAFAAALAALLADPELR 336 (364)
T ss_pred -CCHHHHHHHHHHHHcCHHHH
Confidence 36778999999999887654
No 48
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.20 E-value=5.2e-06 Score=61.32 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=61.0
Q ss_pred cEEEecCCChhhhcCCCCccEEEeC-----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHH
Q psy10599 21 VYSIFDSFVHFSSSAHPKCRLFITH-----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95 (112)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~I~h-----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~ 95 (112)
++.+.+.......++ ..+|+++.. +|..+++||+++|+|+|..|...++....+.+.+.|+++... +.++
T Consensus 303 ~v~l~~~~~el~~~y-~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~~ 377 (425)
T PRK05749 303 DVLLGDTMGELGLLY-AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAED 377 (425)
T ss_pred cEEEEecHHHHHHHH-HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHHH
Confidence 344444444433233 689985442 344568999999999999998888877777777777776643 6889
Q ss_pred HHHHHHHHhcCcccc
Q psy10599 96 LRRKVHQVLYEPKYV 110 (112)
Q Consensus 96 l~~~l~~~l~~~~~~ 110 (112)
|.+++.++++|++.+
T Consensus 378 La~~l~~ll~~~~~~ 392 (425)
T PRK05749 378 LAKAVTYLLTDPDAR 392 (425)
T ss_pred HHHHHHHHhcCHHHH
Confidence 999999999887654
No 49
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.18 E-value=1.2e-05 Score=57.78 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=59.8
Q ss_pred CCcEEEecCCCh--hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHH
Q psy10599 19 AAVYSIFDSFVH--FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96 (112)
Q Consensus 19 ~~~~~~~~~~~~--~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l 96 (112)
.+++.+.++.+. ...++ ..+|++|+.+| +.+.|+++.|+|+|.++.. |. +..+.+.|++..+.. +.+++
T Consensus 257 ~~~v~~~~~~~~~~~~~l~-~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~g~~~~~~~---~~~~i 327 (363)
T cd03786 257 HPNVLLISPLGYLYFLLLL-KNADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVESGTNVLVGT---DPEAI 327 (363)
T ss_pred CCCEEEECCcCHHHHHHHH-HcCcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhheeeEEecCC---CHHHH
Confidence 457888776553 32332 67999999999 7788999999999998643 22 334556677766542 58899
Q ss_pred HHHHHHHhcCcccc
Q psy10599 97 RRKVHQVLYEPKYV 110 (112)
Q Consensus 97 ~~~l~~~l~~~~~~ 110 (112)
.+++.++++++..+
T Consensus 328 ~~~i~~ll~~~~~~ 341 (363)
T cd03786 328 LAAIEKLLSDEFAY 341 (363)
T ss_pred HHHHHHHhcCchhh
Confidence 99999999876544
No 50
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.08 E-value=2.6e-05 Score=56.47 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=60.5
Q ss_pred CCCcEEEecCCChh---hhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHH
Q psy10599 18 TAAVYSIFDSFVHF---SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYE 94 (112)
Q Consensus 18 ~~~~~~~~~~~~~~---~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~ 94 (112)
..+++.+.+.++.. .++ ..+|++|+..|.. +.||+++|+|+|.++..+++.. +...|.+..+. .+++
T Consensus 253 ~~~~v~~~~~~~~~~~~~~l--~~ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~---~d~~ 322 (365)
T TIGR00236 253 DSKRVHLIEPLEYLDFLNLA--ANSHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG---TDKE 322 (365)
T ss_pred CCCCEEEECCCChHHHHHHH--HhCCEEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC---CCHH
Confidence 34578888877654 345 6789999987754 6999999999999876554442 23356666553 3788
Q ss_pred HHHHHHHHHhcCcccc
Q psy10599 95 ELRRKVHQVLYEPKYV 110 (112)
Q Consensus 95 ~l~~~l~~~l~~~~~~ 110 (112)
++.+++.+++++++++
T Consensus 323 ~i~~ai~~ll~~~~~~ 338 (365)
T TIGR00236 323 NITKAAKRLLTDPDEY 338 (365)
T ss_pred HHHHHHHHHHhChHHH
Confidence 9999999999887644
No 51
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.08 E-value=1.4e-05 Score=57.15 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=63.4
Q ss_pred CCCcEEEecCCChhh---hcCCCCccEEEeCC----------ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCcee
Q psy10599 18 TAAVYSIFDSFVHFS---SSAHPKCRLFITHG----------GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 84 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~---~l~~~~~~~~I~hg----------G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~ 84 (112)
...++.+.+++|..+ ++ ..+|++|... -.+++.||+++|+|+|.-+..+ +.+.+.+.+.|.
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~--~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~ 316 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELM--RRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGL 316 (367)
T ss_pred CCCeEEECCCCCHHHHHHHH--HhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeE
Confidence 467899999998543 46 6789987533 3578999999999999876643 455566667888
Q ss_pred eecCCCCCHHHHHHHHHHHhcCcc
Q psy10599 85 MVDFDVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 85 ~l~~~~~~~~~l~~~l~~~l~~~~ 108 (112)
.++. .+.+++.+++.+++++++
T Consensus 317 ~~~~--~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 317 LVPE--GDVAALAAALGRLLADPD 338 (367)
T ss_pred EECC--CCHHHHHHHHHHHHcCHH
Confidence 8764 367899999999998875
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.01 E-value=1.9e-05 Score=55.02 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred cCCCcEEEecCCChh---hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 17 TTAAVYSIFDSFVHF---SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~---~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
..+.++.+.++++.. .++ ..+|++|.. |..+++.||+++|+|+|..+.. ...+.+...+.|...+..
T Consensus 253 ~~~~~v~~~g~~~~~~~~~~~--~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~----~~~~~~~~~~~g~~~~~~ 326 (374)
T cd03801 253 GLGDRVTFLGFVPDEDLPALY--AAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG----GIPEVVEDGETGLLVPPG 326 (374)
T ss_pred CCCcceEEEeccChhhHHHHH--HhcCEEEecchhccccchHHHHHHcCCcEEEeCCC----ChhHHhcCCcceEEeCCC
Confidence 356789999999643 355 678998853 4567899999999999987652 234455556677777643
Q ss_pred CCCHHHHHHHHHHHhcCcccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+++.+++.+++.+++.+
T Consensus 327 --~~~~l~~~i~~~~~~~~~~ 345 (374)
T cd03801 327 --DPEALAEAILRLLDDPELR 345 (374)
T ss_pred --CHHHHHHHHHHHHcChHHH
Confidence 5889999999998887543
No 53
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.98 E-value=3.7e-05 Score=54.48 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=61.8
Q ss_pred cCCCcEEEecCCChhh---hcCCCCccEEEeC-----CC-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeec
Q psy10599 17 TTAAVYSIFDSFVHFS---SSAHPKCRLFITH-----GG-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~l~~~~~~~~I~h-----gG-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~ 87 (112)
....|+.+.+|+|+.+ ++ ..+|+++.- .| ..++.||+++|+|+|.....+....... ..+.|....
T Consensus 241 ~~~~~V~~~g~v~~~~~~~~~--~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~ 315 (357)
T cd03795 241 GLLDRVRFLGRLDDEEKAALL--AACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVP 315 (357)
T ss_pred CCcceEEEcCCCCHHHHHHHH--HhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeC
Confidence 3456899999999643 45 678888832 22 4579999999999999765444332222 256677765
Q ss_pred CCCCCHHHHHHHHHHHhcCcccc
Q psy10599 88 FDVFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~l~~~~~~ 110 (112)
. -+.+++.+++.+++++++.+
T Consensus 316 ~--~d~~~~~~~i~~l~~~~~~~ 336 (357)
T cd03795 316 P--GDPAALAEAIRRLLEDPELR 336 (357)
T ss_pred C--CCHHHHHHHHHHHHHCHHHH
Confidence 3 26889999999999887643
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.92 E-value=4.5e-05 Score=54.93 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=63.6
Q ss_pred cCCCcEEEecCCChhh---hcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 17 TTAAVYSIFDSFVHFS---SSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
....++.+.+|+|+.+ ++ ..+|+++...- ..++.||+++|+|+|.-+..+ ..+.+++.+.|..++..
T Consensus 280 ~~~~~v~~~g~~~~~~~~~~~--~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~ 353 (398)
T cd03800 280 GVIDRVDFPGRVSREDLPALY--RAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR 353 (398)
T ss_pred CCCceEEEeccCCHHHHHHHH--HhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC
Confidence 3456899999999654 46 67999986532 468999999999999876433 44456666788887643
Q ss_pred CCCHHHHHHHHHHHhcCccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~ 109 (112)
+.+++.++|.+++++++.
T Consensus 354 --~~~~l~~~i~~l~~~~~~ 371 (398)
T cd03800 354 --DPEALAAALRRLLTDPAL 371 (398)
T ss_pred --CHHHHHHHHHHHHhCHHH
Confidence 589999999999987654
No 55
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.90 E-value=8.8e-05 Score=52.09 Aligned_cols=84 Identities=11% Similarity=0.144 Sum_probs=62.0
Q ss_pred CCCcEEEecCCChhh---hcCCCCccEEEeC-----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 18 TAAVYSIFDSFVHFS---SSAHPKCRLFITH-----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~---~l~~~~~~~~I~h-----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
...++.+.++++..+ ++ .++|++|.. |...++.||+++|+|+|..+.. ...+.+.+.+.|..+...
T Consensus 241 ~~~~v~~~g~~~~~~~~~~~--~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~ 314 (359)
T cd03823 241 GDPRVEFLGAYPQEEIDDFY--AEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPPG 314 (359)
T ss_pred CCCeEEEeCCCCHHHHHHHH--HhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECCC
Confidence 346899999997543 46 678998843 3346899999999999987643 244555665678887653
Q ss_pred CCCHHHHHHHHHHHhcCccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~ 109 (112)
+.+++.+++.++++++..
T Consensus 315 --d~~~l~~~i~~l~~~~~~ 332 (359)
T cd03823 315 --DAEDLAAALERLIDDPDL 332 (359)
T ss_pred --CHHHHHHHHHHHHhChHH
Confidence 588999999999987653
No 56
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.88 E-value=2.7e-05 Score=50.37 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=63.6
Q ss_pred cCCCcEEEecCCC--h-hhhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 17 TTAAVYSIFDSFV--H-FSSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 17 ~~~~~~~~~~~~~--~-~~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
....++.+.++.+ . ..++ ..+|++++. |...++.||+++|+|+|+-. ...+.+.+.....|..++..
T Consensus 70 ~~~~~i~~~~~~~~~~l~~~~--~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~ 143 (172)
T PF00534_consen 70 NLKENIIFLGYVPDDELDELY--KSSDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPN 143 (172)
T ss_dssp TCGTTEEEEESHSHHHHHHHH--HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTT
T ss_pred ccccccccccccccccccccc--ccceeccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCC
Confidence 3557899999988 3 2355 578999987 66789999999999999864 24445666666678888753
Q ss_pred CCCHHHHHHHHHHHhcCcccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+++.++|.+++.+++++
T Consensus 144 --~~~~l~~~i~~~l~~~~~~ 162 (172)
T PF00534_consen 144 --DIEELADAIEKLLNDPELR 162 (172)
T ss_dssp --SHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHCCHHHH
Confidence 8899999999999887554
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.83 E-value=8.7e-05 Score=51.54 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=60.4
Q ss_pred CCCcEEEecCCChh-hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcC-ceeeecCCCC
Q psy10599 18 TAAVYSIFDSFVHF-SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEG-YGLMVDFDVF 91 (112)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g-~g~~l~~~~~ 91 (112)
...++.+.++.... .++ ..+|++|.... .+++.||+++|+|+|..+..+.+. .+...+ .|...+. .
T Consensus 233 ~~~~v~~~g~~~~~~~~~--~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~--~ 304 (348)
T cd03820 233 LEDRVILLGFTKNIEEYY--AKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN--G 304 (348)
T ss_pred CCCeEEEcCCcchHHHHH--HhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC--C
Confidence 45678888874443 455 67899887753 578999999999999876544332 233333 7777754 3
Q ss_pred CHHHHHHHHHHHhcCcccc
Q psy10599 92 DYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+++.+++.++++|++.+
T Consensus 305 ~~~~~~~~i~~ll~~~~~~ 323 (348)
T cd03820 305 DVEALAEALLRLMEDEELR 323 (348)
T ss_pred CHHHHHHHHHHHHcCHHHH
Confidence 5789999999999888654
No 58
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.83 E-value=0.00012 Score=53.62 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=60.6
Q ss_pred cCCCcEEEecCCChh---hhcCCCCccEEEeCC----C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecC
Q psy10599 17 TTAAVYSIFDSFVHF---SSSAHPKCRLFITHG----G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~---~~l~~~~~~~~I~hg----G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~ 88 (112)
....++.+.+++|.. .++ ..+|++|... | ..+++||+++|+|+|.....+ +.+.+.+...|..+..
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~--~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~ 327 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYY--PLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLAE 327 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHH--HhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEeC
Confidence 445678899999854 346 6889988643 2 367889999999999976532 3344555556764421
Q ss_pred CCCCHHHHHHHHHHHhcCccc
Q psy10599 89 DVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 89 ~~~~~~~l~~~l~~~l~~~~~ 109 (112)
..+.+++.++|.++++|++.
T Consensus 328 -~~d~~~la~~I~~ll~d~~~ 347 (380)
T PRK15484 328 -PMTSDSIISDINRTLADPEL 347 (380)
T ss_pred -CCCHHHHHHHHHHHHcCHHH
Confidence 23689999999999988753
No 59
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.77 E-value=8.3e-05 Score=51.86 Aligned_cols=84 Identities=11% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCCcEEEecCCChh-hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 18 TAAVYSIFDSFVHF-SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
...++.+.++.... .++ ..+|++|.... .+++.||+++|+|+|.-+..+ ..+.+.+.+.|..+..+ +
T Consensus 244 ~~~~v~~~g~~~~~~~~~--~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~~--~ 315 (359)
T cd03808 244 LEGRVEFLGFRDDVPELL--AAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPPG--D 315 (359)
T ss_pred CcceEEEeeccccHHHHH--HhccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECCC--C
Confidence 34678888875544 455 67899987653 578999999999999976543 23445555677777643 6
Q ss_pred HHHHHHHHHHHhcCccc
Q psy10599 93 YEELRRKVHQVLYEPKY 109 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~~~ 109 (112)
.+++.+++.+++.+++.
T Consensus 316 ~~~~~~~i~~l~~~~~~ 332 (359)
T cd03808 316 AEALADAIERLIEDPEL 332 (359)
T ss_pred HHHHHHHHHHHHhCHHH
Confidence 88899999998887654
No 60
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.76 E-value=0.00014 Score=51.08 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=59.8
Q ss_pred cCCCcEEEecCCChhh---hcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 17 TTAAVYSIFDSFVHFS---SSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
...+++.+.+|++..+ ++ ..+|++|...- ..++.||+++|+|+|..+..+ ....+.. +.|.....
T Consensus 259 ~~~~~v~~~g~~~~~~~~~~~--~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~- 330 (375)
T cd03821 259 GLEDRVTFTGMLYGEDKAAAL--ADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD- 330 (375)
T ss_pred CccceEEEcCCCChHHHHHHH--hhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC-
Confidence 3467899999999543 45 57898886543 578999999999999976433 2333344 67777653
Q ss_pred CCCHHHHHHHHHHHhcCccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~ 109 (112)
+.+++.+++.+++++++.
T Consensus 331 --~~~~~~~~i~~l~~~~~~ 348 (375)
T cd03821 331 --DVDALAAALRRALELPQR 348 (375)
T ss_pred --ChHHHHHHHHHHHhCHHH
Confidence 458899999999987643
No 61
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.76 E-value=0.0001 Score=51.96 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=60.7
Q ss_pred CCCcEEEecCCChhh---hcCCCCccEEEeCCC---------hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceee
Q psy10599 18 TAAVYSIFDSFVHFS---SSAHPKCRLFITHGG---------VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLM 85 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~---~l~~~~~~~~I~hgG---------~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~ 85 (112)
...++.+.++++..+ ++ ..+|++|.... .+++.||+++|+|+|..+..+.+.. +...+.|..
T Consensus 273 ~~~~v~~~g~~~~~~~~~~~--~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~~~g~~ 346 (394)
T cd03794 273 GLDNVTFLGRVPKEELPELL--AAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEAGAGLV 346 (394)
T ss_pred CCCcEEEeCCCChHHHHHHH--HhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccCCcceE
Confidence 346899999988544 45 67899885433 3447999999999999987554332 233366777
Q ss_pred ecCCCCCHHHHHHHHHHHhcCcccc
Q psy10599 86 VDFDVFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 86 l~~~~~~~~~l~~~l~~~l~~~~~~ 110 (112)
+..+ +.+++.+++.+++.+++.+
T Consensus 347 ~~~~--~~~~l~~~i~~~~~~~~~~ 369 (394)
T cd03794 347 VPPG--DPEALAAAILELLDDPEER 369 (394)
T ss_pred eCCC--CHHHHHHHHHHHHhChHHH
Confidence 6543 6889999999999776543
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.73 E-value=0.00029 Score=49.22 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=61.8
Q ss_pred CCCcEEEecCCChh---hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCC
Q psy10599 18 TAAVYSIFDSFVHF---SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 18 ~~~~~~~~~~~~~~---~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
...++.+.++++.. .++ .++|++|.. |..+++.||+++|+|+|+-+..+ ..+.+.+.+.|.....
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~--~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~-- 328 (377)
T cd03798 257 LEDRVTFLGAVPHEEVPAYY--AAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPP-- 328 (377)
T ss_pred CcceEEEeCCCCHHHHHHHH--HhcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECC--
Confidence 45789999999864 345 678888843 45688999999999999876532 3345566666777654
Q ss_pred CCHHHHHHHHHHHhcCcc
Q psy10599 91 FDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~~ 108 (112)
.+.+++.+++.++++++.
T Consensus 329 ~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 329 GDPEALAEAILRLLADPW 346 (377)
T ss_pred CCHHHHHHHHHHHhcCcH
Confidence 368899999999998765
No 63
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.72 E-value=0.0002 Score=52.98 Aligned_cols=87 Identities=10% Similarity=0.128 Sum_probs=61.3
Q ss_pred CCcEEEecCCChhh---hcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 19 AAVYSIFDSFVHFS---SSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 19 ~~~~~~~~~~~~~~---~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
..++.+.+|++..+ ++....++++|...- ..+++||+++|+|+|.-...+ ..+.+.+...|..+.. ..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-~~ 362 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-DP 362 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC-CC
Confidence 45788999999654 343345788876543 467999999999999865432 3345555447877754 23
Q ss_pred CHHHHHHHHHHHhcCcccc
Q psy10599 92 DYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+++.++|.++++|++.+
T Consensus 363 ~~~~la~~I~~ll~~~~~~ 381 (407)
T cd04946 363 TPNELVSSLSKFIDNEEEY 381 (407)
T ss_pred CHHHHHHHHHHHHhCHHHH
Confidence 6889999999999876543
No 64
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.71 E-value=9.7e-05 Score=51.97 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=61.6
Q ss_pred cCCCcEEEecCCChhh---hcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 17 TTAAVYSIFDSFVHFS---SSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
...+++.+.+++|+.+ ++ ..+|+++... ...++.||+++|+|+|..+.. ..+..+.+.+.|..+...
T Consensus 256 ~~~~~v~~~g~~~~~~~~~~~--~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~~~g~~~~~~ 329 (374)
T cd03817 256 GLADRVIFTGFVPREELPDYY--KAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADGENGFLFPPG 329 (374)
T ss_pred CCCCcEEEeccCChHHHHHHH--HHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecCceeEEeCCC
Confidence 3467899999998654 45 5789988554 347899999999999987542 234555666778777643
Q ss_pred CCCHHHHHHHHHHHhcCccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~ 109 (112)
+ . ++.+++.+++++++.
T Consensus 330 ~--~-~~~~~i~~l~~~~~~ 346 (374)
T cd03817 330 D--E-ALAEALLRLLQDPEL 346 (374)
T ss_pred C--H-HHHHHHHHHHhChHH
Confidence 2 2 899999999988764
No 65
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.68 E-value=0.0002 Score=52.98 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=61.8
Q ss_pred CCCcEEEecCCChhh---hcCCCCccEEEeC---------CCh-hHHHHHHHhCCCeEeecCccchHHHHHHHHHcCcee
Q psy10599 18 TAAVYSIFDSFVHFS---SSAHPKCRLFITH---------GGV-HSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 84 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~---~l~~~~~~~~I~h---------gG~-~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~ 84 (112)
+.+++.+.+|+|+.+ ++ ..+|++|.. -|. .+++||+++|+|+|.-...+ ..+.+++...|.
T Consensus 277 l~~~V~~~G~~~~~el~~~l--~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~ 350 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAML--DDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGW 350 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHH--HhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceE
Confidence 457899999998654 45 688998864 233 67899999999999875432 234445555687
Q ss_pred eecCCCCCHHHHHHHHHHHhc-Cccc
Q psy10599 85 MVDFDVFDYEELRRKVHQVLY-EPKY 109 (112)
Q Consensus 85 ~l~~~~~~~~~l~~~l~~~l~-~~~~ 109 (112)
.++.+ +.+++.++|.++++ |++.
T Consensus 351 lv~~~--d~~~la~ai~~l~~~d~~~ 374 (406)
T PRK15427 351 LVPEN--DAQALAQRLAAFSQLDTDE 374 (406)
T ss_pred EeCCC--CHHHHHHHHHHHHhCCHHH
Confidence 77643 68899999999998 7653
No 66
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.68 E-value=3.4e-05 Score=56.29 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=54.8
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEee-cCccchHHHHHHHH---HcCceeee-------------cCCCCCH
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV-PLFADQKQNGQKAE---EEGYGLMV-------------DFDVFDY 93 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v-P~~~dq~~na~~~~---~~g~g~~l-------------~~~~~~~ 93 (112)
.+++ ..||++|+.+|..|+ |++..|+|+|+. .....|..|++++. ..|+.-.+ -.+++++
T Consensus 230 ~~~m--~~aDlal~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~ 306 (347)
T PRK14089 230 HKAL--LEAEFAFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTV 306 (347)
T ss_pred HHHH--HhhhHHHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCH
Confidence 4566 689999999999999 999999999995 34578999999998 45655544 2356788
Q ss_pred HHHHHHHHH
Q psy10599 94 EELRRKVHQ 102 (112)
Q Consensus 94 ~~l~~~l~~ 102 (112)
+.|.+.+.+
T Consensus 307 ~~la~~i~~ 315 (347)
T PRK14089 307 ENLLKAYKE 315 (347)
T ss_pred HHHHHHHHH
Confidence 888888765
No 67
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.67 E-value=0.00031 Score=49.92 Aligned_cols=86 Identities=7% Similarity=-0.057 Sum_probs=60.8
Q ss_pred cCCCcEEEecCCCh-hhhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 17 TTAAVYSIFDSFVH-FSSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
...+++.+.++..+ ..++ ..+|++|.. |-..+++||++.|+|+|.-...+. ...+.+ +.+..... -
T Consensus 246 ~~~~~v~~~g~~~~~~~~~--~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~-~~~~~~~~--~ 316 (358)
T cd03812 246 GLEDKVIFLGVRNDVPELL--QAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD-LVKFLSLD--E 316 (358)
T ss_pred CCCCcEEEecccCCHHHHH--HhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc-CccEEeCC--C
Confidence 34578888888555 3456 689998875 346889999999999998754332 223344 45555432 2
Q ss_pred CHHHHHHHHHHHhcCccccc
Q psy10599 92 DYEELRRKVHQVLYEPKYVG 111 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~~~~~ 111 (112)
+++++.++|.++++++..++
T Consensus 317 ~~~~~a~~i~~l~~~~~~~~ 336 (358)
T cd03812 317 SPEIWAEEILKLKSEDRRER 336 (358)
T ss_pred CHHHHHHHHHHHHhCcchhh
Confidence 57999999999999987654
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.66 E-value=0.0002 Score=50.63 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=60.4
Q ss_pred CCCcEEEecCCChh---hhcCCCCccEEEe----------CCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCcee
Q psy10599 18 TAAVYSIFDSFVHF---SSSAHPKCRLFIT----------HGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGL 84 (112)
Q Consensus 18 ~~~~~~~~~~~~~~---~~l~~~~~~~~I~----------hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~ 84 (112)
.++++.+.+++|.. .++ ..+|+++. -|..+++.|++++|+|+|..+..+ ..+.+.+...|.
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~--~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~ 307 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELL--RAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGL 307 (355)
T ss_pred CCCeEEECCcCChHHHHHHH--HhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceE
Confidence 46789999999754 355 57888887 344578999999999999875432 123444444777
Q ss_pred eecCCCCCHHHHHHHHHHHhcCcc
Q psy10599 85 MVDFDVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 85 ~l~~~~~~~~~l~~~l~~~l~~~~ 108 (112)
.+..+ +.+++.++|.++++++.
T Consensus 308 ~~~~~--~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 308 LVPPG--DPEALADAIERLLDDPE 329 (355)
T ss_pred EeCCC--CHHHHHHHHHHHHhCHH
Confidence 77543 68899999999988765
No 69
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00012 Score=54.34 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=64.5
Q ss_pred cEEEecCCChhhhcCCCCccE------EEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHH
Q psy10599 21 VYSIFDSFVHFSSSAHPKCRL------FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYE 94 (112)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~------~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~ 94 (112)
++.+.+-+-.+.++. .-+|+ ++.+||+| .+|++++|+|+|.-|+...|..-++.+.+.|+++.++ +.+
T Consensus 301 dV~l~DtmGEL~l~y-~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~----~~~ 374 (419)
T COG1519 301 DVLLGDTMGELGLLY-GIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----DAD 374 (419)
T ss_pred cEEEEecHhHHHHHH-hhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC----CHH
Confidence 455555444444333 45665 45689988 5599999999999999999999999999999999997 367
Q ss_pred HHHHHHHHHhcCcccc
Q psy10599 95 ELRRKVHQVLYEPKYV 110 (112)
Q Consensus 95 ~l~~~l~~~l~~~~~~ 110 (112)
.+.+++..++.|++.+
T Consensus 375 ~l~~~v~~l~~~~~~r 390 (419)
T COG1519 375 LLAKAVELLLADEDKR 390 (419)
T ss_pred HHHHHHHHhcCCHHHH
Confidence 7888888777765544
No 70
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.59 E-value=0.00024 Score=50.85 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=60.8
Q ss_pred cCCCcEEEecCCChh---hhcCCCCccEEEeC--CC-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCC
Q psy10599 17 TTAAVYSIFDSFVHF---SSSAHPKCRLFITH--GG-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~---~~l~~~~~~~~I~h--gG-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
...+|+.+.+++|.. .++ ..+|+++.. -| ..++.||+++|+|+|.....+ ..+.+.+...|..+..+
T Consensus 239 ~~~~~V~~~g~~~~~~~~~~~--~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~- 311 (351)
T cd03804 239 KAGPNVTFLGRVSDEELRDLY--ARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ- 311 (351)
T ss_pred hcCCCEEEecCCCHHHHHHHH--HhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC-
Confidence 456799999999974 356 678888853 22 356789999999999986433 22334455678877643
Q ss_pred CCHHHHHHHHHHHhcCc
Q psy10599 91 FDYEELRRKVHQVLYEP 107 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~ 107 (112)
+.+++.++|.++++++
T Consensus 312 -~~~~la~~i~~l~~~~ 327 (351)
T cd03804 312 -TVESLAAAVERFEKNE 327 (351)
T ss_pred -CHHHHHHHHHHHHhCc
Confidence 6888999999999887
No 71
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.57 E-value=0.00031 Score=49.15 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCCcEEEecCCChh-hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 18 TAAVYSIFDSFVHF-SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
...++.+.+..+.. .++ ..+|+++.... .+++.||+++|+|+|.....+ +.+.+.+ .|..+..+ +
T Consensus 249 ~~~~v~~~g~~~~~~~~~--~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~----~~e~~~~--~g~~~~~~--~ 318 (365)
T cd03807 249 LEDKVILLGERSDVPALL--NALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD----NAELVGD--TGFLVPPG--D 318 (365)
T ss_pred CCceEEEccccccHHHHH--HhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC----hHHHhhc--CCEEeCCC--C
Confidence 45577777765543 455 68999997654 479999999999999865432 3334444 55555533 5
Q ss_pred HHHHHHHHHHHhcCccc
Q psy10599 93 YEELRRKVHQVLYEPKY 109 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~~~ 109 (112)
.+++.+++.+++++++.
T Consensus 319 ~~~l~~~i~~l~~~~~~ 335 (365)
T cd03807 319 PEALAEAIEALLADPAL 335 (365)
T ss_pred HHHHHHHHHHHHhChHH
Confidence 88999999999987643
No 72
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.55 E-value=0.00093 Score=48.34 Aligned_cols=85 Identities=7% Similarity=-0.033 Sum_probs=60.4
Q ss_pred cCCCcEEEecCCCh--h---hhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeec-CccchHHHHHHHHHcCceeee
Q psy10599 17 TTAAVYSIFDSFVH--F---SSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVP-LFADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 17 ~~~~~~~~~~~~~~--~---~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP-~~~dq~~na~~~~~~g~g~~l 86 (112)
..++++.+.+|++. . +.+ ..+|++|... -..++.||+++|+|+|..- ..+ ..+.+++...|..+
T Consensus 233 ~l~~~v~f~G~~~~~~~~~~~~~--~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv 306 (359)
T PRK09922 233 GIEQRIIWHGWQSQPWEVVQQKI--KNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELY 306 (359)
T ss_pred CCCCeEEEecccCCcHHHHHHHH--hcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEE
Confidence 34678999999753 2 223 4678888643 2589999999999999874 322 11344555567777
Q ss_pred cCCCCCHHHHHHHHHHHhcCccc
Q psy10599 87 DFDVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 87 ~~~~~~~~~l~~~l~~~l~~~~~ 109 (112)
.. .+.+++.++|.+++++++.
T Consensus 307 ~~--~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 307 TP--GNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred CC--CCHHHHHHHHHHHHhCccc
Confidence 54 3789999999999998864
No 73
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.54 E-value=0.00026 Score=50.65 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=60.3
Q ss_pred CCCcEEEecCCChh-hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 18 TAAVYSIFDSFVHF-SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
..+++.+.++.+.. +++ ..+|++|.. |...++.||+++|+|+|.....+ ..+.+.+...|..++.+ +
T Consensus 251 ~~~~v~~~g~~~~~~~~~--~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~----~~e~i~~~~~G~~~~~~--~ 322 (371)
T cd04962 251 LQDDVLFLGKQDHVEELL--SIADLFLLPSEKESFGLAALEAMACGVPVVASNAGG----IPEVVKHGETGFLVDVG--D 322 (371)
T ss_pred CCceEEEecCcccHHHHH--HhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCC----chhhhcCCCceEEcCCC--C
Confidence 35678888988754 455 688998854 33568999999999999975432 34455554567666542 6
Q ss_pred HHHHHHHHHHHhcCccc
Q psy10599 93 YEELRRKVHQVLYEPKY 109 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~~~ 109 (112)
.+++.+++.++++++..
T Consensus 323 ~~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 323 VEAMAEYALSLLEDDEL 339 (371)
T ss_pred HHHHHHHHHHHHhCHHH
Confidence 78899999999877653
No 74
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.54 E-value=0.00046 Score=50.39 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=60.6
Q ss_pred CCCcEEEecCCChh---hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCC
Q psy10599 18 TAAVYSIFDSFVHF---SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 18 ~~~~~~~~~~~~~~---~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
..+++.+.++++.. +++ ..+|++|.. |...++.||+++|+|+|.....+ ..+.+.+...|..++.
T Consensus 281 l~~~v~~~g~~~~~~~~~~l--~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~-- 352 (405)
T TIGR03449 281 IADRVRFLPPRPPEELVHVY--RAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDG-- 352 (405)
T ss_pred CCceEEECCCCCHHHHHHHH--HhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCC--
Confidence 34689999999854 356 688998853 33468999999999999975432 2234455566777654
Q ss_pred CCHHHHHHHHHHHhcCccc
Q psy10599 91 FDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~~~ 109 (112)
-+.+++.+++.++++++..
T Consensus 353 ~d~~~la~~i~~~l~~~~~ 371 (405)
T TIGR03449 353 HDPADWADALARLLDDPRT 371 (405)
T ss_pred CCHHHHHHHHHHHHhCHHH
Confidence 3688899999999987654
No 75
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.52 E-value=0.00034 Score=52.49 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=60.8
Q ss_pred CcEEEecCCChhh---hcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHH---cCceeeecCC
Q psy10599 20 AVYSIFDSFVHFS---SSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEE---EGYGLMVDFD 89 (112)
Q Consensus 20 ~~~~~~~~~~~~~---~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~---~g~g~~l~~~ 89 (112)
.++.+.++++..+ ++ ..+|++|.... ..++.||+++|+|+|.....+ ..+.+.+ .+.|..+..+
T Consensus 312 ~~V~f~G~v~~~ev~~~~--~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~ 385 (465)
T PLN02871 312 TPTVFTGMLQGDELSQAY--ASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG 385 (465)
T ss_pred CCeEEeccCCHHHHHHHH--HHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC
Confidence 4788999997543 55 68999997643 456889999999999875432 2233444 5678887643
Q ss_pred CCCHHHHHHHHHHHhcCcccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+++.+++.+++++++.+
T Consensus 386 --d~~~la~~i~~ll~~~~~~ 404 (465)
T PLN02871 386 --DVDDCVEKLETLLADPELR 404 (465)
T ss_pred --CHHHHHHHHHHHHhCHHHH
Confidence 6889999999999887644
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.47 E-value=0.00047 Score=48.68 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCCcEEEecC-CChh---hhcCCCCccEEEeC------CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeec
Q psy10599 18 TAAVYSIFDS-FVHF---SSSAHPKCRLFITH------GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 18 ~~~~~~~~~~-~~~~---~~l~~~~~~~~I~h------gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~ 87 (112)
...++.+.+. +|.. .++ ..+|+++.. |..+++.||+++|+|+|..+..+ ...+...+.|..+.
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~--~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~ 317 (366)
T cd03822 245 LADRVIFINRYLPDEELPELF--SAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVP 317 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHH--hhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEc
Confidence 4567877754 7753 455 678998843 33568999999999999877543 23344556777776
Q ss_pred CCCCCHHHHHHHHHHHhcCccc
Q psy10599 88 FDVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~l~~~~~ 109 (112)
.. +.+++.+++.+++++++.
T Consensus 318 ~~--d~~~~~~~l~~l~~~~~~ 337 (366)
T cd03822 318 PG--DPAALAEAIRRLLADPEL 337 (366)
T ss_pred CC--CHHHHHHHHHHHHcChHH
Confidence 43 588999999999987543
No 77
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.44 E-value=0.00034 Score=51.21 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=60.0
Q ss_pred CCcEEEecCCChhh---hcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 19 AAVYSIFDSFVHFS---SSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 19 ~~~~~~~~~~~~~~---~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
.+++.+.+++|+.+ ++ ..+|++|.-. | ..++.||+++|+|+|..... ...+.+.....|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l--~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~----g~~e~i~~~~~G~lv~~~-- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALL--QVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA----PVREVITDGENGLLVDFF-- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHH--HhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCC----CchhhcccCCceEEcCCC--
Confidence 46899999998654 45 5788877422 2 24789999999999987442 233445544567777543
Q ss_pred CHHHHHHHHHHHhcCcccc
Q psy10599 92 DYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~~~~ 110 (112)
+++++.+++.+++++++.+
T Consensus 352 d~~~la~~i~~ll~~~~~~ 370 (396)
T cd03818 352 DPDALAAAVIELLDDPARR 370 (396)
T ss_pred CHHHHHHHHHHHHhCHHHH
Confidence 6899999999999887543
No 78
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.40 E-value=0.0009 Score=48.42 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCCcEEEecCCChh---hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCC
Q psy10599 18 TAAVYSIFDSFVHF---SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 18 ~~~~~~~~~~~~~~---~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
..+++.+.+++|.. .++ ..+|+++.... ..+++||+++|+|+|..-..+ ..+.+.+.+.|.....
T Consensus 278 l~~~V~f~g~~~~~~~~~~l--~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~~-- 349 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLL--SSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCEP-- 349 (392)
T ss_pred CCceEEEeCCCChHHHHHHH--hhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeCC--
Confidence 45789999999865 345 67898885322 367899999999999974432 2233444456777642
Q ss_pred CCHHHHHHHHHHHhcCccc
Q psy10599 91 FDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~~~ 109 (112)
+.+++.+++.+++++++.
T Consensus 350 -~~~~~a~~i~~l~~~~~~ 367 (392)
T cd03805 350 -TPEEFAEAMLKLANDPDL 367 (392)
T ss_pred -CHHHHHHHHHHHHhChHH
Confidence 688999999999988754
No 79
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.39 E-value=0.00034 Score=51.26 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCcEEEecCCChh-hhcCCCCccEEEeC----CCh-hHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 19 AAVYSIFDSFVHF-SSSAHPKCRLFITH----GGV-HSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 19 ~~~~~~~~~~~~~-~~l~~~~~~~~I~h----gG~-~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
..++.+.++++.. .++ ..+|++|.. .|. +.+.||+++|+|+|..+...+.. ....+.|..+. .+
T Consensus 279 ~~~V~~~G~v~~~~~~~--~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYL--AHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHH--HhCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CC
Confidence 4578899999864 445 678998732 343 46999999999999987532211 12235666664 27
Q ss_pred HHHHHHHHHHHhcCccc
Q psy10599 93 YEELRRKVHQVLYEPKY 109 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~~~ 109 (112)
++++.+++.++++|++.
T Consensus 349 ~~~la~ai~~ll~~~~~ 365 (397)
T TIGR03087 349 PADFAAAILALLANPAE 365 (397)
T ss_pred HHHHHHHHHHHHcCHHH
Confidence 89999999999988754
No 80
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.38 E-value=0.00074 Score=48.73 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=58.1
Q ss_pred CCcEEEecCCCh-hhhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCH
Q psy10599 19 AAVYSIFDSFVH-FSSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDY 93 (112)
Q Consensus 19 ~~~~~~~~~~~~-~~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~ 93 (112)
..++.+.++... ..++ ..+|++|.- |-..++.||+++|+|+|.-...+ +.+.+.+...|..++. -+.
T Consensus 254 ~~~v~~~g~~~~~~~~~--~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~--~d~ 325 (374)
T TIGR03088 254 AHLVWLPGERDDVPALM--QALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPP--GDA 325 (374)
T ss_pred cceEEEcCCcCCHHHHH--HhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCC--CCH
Confidence 456777676554 3456 678998853 34678999999999999976533 3344445456777754 368
Q ss_pred HHHHHHHHHHhcCccc
Q psy10599 94 EELRRKVHQVLYEPKY 109 (112)
Q Consensus 94 ~~l~~~l~~~l~~~~~ 109 (112)
+++.+++.++++++..
T Consensus 326 ~~la~~i~~l~~~~~~ 341 (374)
T TIGR03088 326 VALARALQPYVSDPAA 341 (374)
T ss_pred HHHHHHHHHHHhCHHH
Confidence 8999999999877643
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.38 E-value=0.00027 Score=50.07 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCCcEEEecCCChh-hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 18 TAAVYSIFDSFVHF-SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
..+++.+.++.... +++ ..+|++|.... .+++.||+++|+|+|.... ....+.+++. |..+.. .+
T Consensus 243 ~~~~v~~~g~~~~~~~~~--~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~--g~~~~~--~~ 312 (360)
T cd04951 243 LSNRVKLLGLRDDIAAYY--NAADLFVLSSAWEGFGLVVAEAMACELPVVATDA----GGVREVVGDS--GLIVPI--SD 312 (360)
T ss_pred CCCcEEEecccccHHHHH--HhhceEEecccccCCChHHHHHHHcCCCEEEecC----CChhhEecCC--ceEeCC--CC
Confidence 45688888887654 455 67899887653 5789999999999998543 2233444443 344433 36
Q ss_pred HHHHHHHHHHHhc
Q psy10599 93 YEELRRKVHQVLY 105 (112)
Q Consensus 93 ~~~l~~~l~~~l~ 105 (112)
.+++.+++.++++
T Consensus 313 ~~~~~~~i~~ll~ 325 (360)
T cd04951 313 PEALANKIDEILK 325 (360)
T ss_pred HHHHHHHHHHHHh
Confidence 8889999999984
No 82
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.37 E-value=0.00047 Score=48.94 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCCcEEEecCCC-hh---hhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 18 TAAVYSIFDSFV-HF---SSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 18 ~~~~~~~~~~~~-~~---~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
...++.+.+|++ .. .++ ..+|+++... ...++.||+++|+|+|.....+ ..+.+.+.+.|..+..
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~~~~~- 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGYLAKP- 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceEEeCC-
Confidence 455788889988 32 345 6899999864 3588999999999999875432 1122333346666653
Q ss_pred CCCHHHHHHHHHHHhcCcc
Q psy10599 90 VFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~ 108 (112)
.+.+++.+++.+++++++
T Consensus 315 -~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 315 -GDPEDLAEGIEWLLADPD 332 (365)
T ss_pred -CCHHHHHHHHHHHHhCHH
Confidence 368889999999998765
No 83
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.32 E-value=0.00089 Score=48.24 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=60.5
Q ss_pred cCCCcEEEecCCChh-hhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 17 TTAAVYSIFDSFVHF-SSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~-~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
..+.++.+.++.+.. .++ ..+|++|.-. ...+++||+++|+|+|....... ....+.....|..++. .
T Consensus 258 ~~~~~v~~~g~~~~~~~~~--~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~--~ 330 (372)
T cd04949 258 GLEDYVFLKGYTRDLDEVY--QKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIEDGENGYLVPK--G 330 (372)
T ss_pred CCcceEEEcCCCCCHHHHH--hhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcccCCCceEeCC--C
Confidence 345678888877654 455 5788877543 35689999999999998743211 2344555567877764 3
Q ss_pred CHHHHHHHHHHHhcCccc
Q psy10599 92 DYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~~~ 109 (112)
+.+++.++|.+++.+++.
T Consensus 331 d~~~la~~i~~ll~~~~~ 348 (372)
T cd04949 331 DIEALAEAIIELLNDPKL 348 (372)
T ss_pred cHHHHHHHHHHHHcCHHH
Confidence 688999999999988743
No 84
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.28 E-value=0.0012 Score=45.84 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=57.0
Q ss_pred CCCcEEEecCCChh-hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 18 TAAVYSIFDSFVHF-SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
..+++.+.++.+.. .++ ..+|++|.. |..+++.||+++|+|+|..... ...+.+.+...|...+.+ +
T Consensus 244 ~~~~v~~~g~~~~~~~~~--~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~ 315 (353)
T cd03811 244 LADRVHFLGFQSNPYPYL--KAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--D 315 (353)
T ss_pred CCccEEEecccCCHHHHH--HhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--C
Confidence 45688888987754 455 678998854 3357899999999999986543 344566777788887643 5
Q ss_pred HHHH---HHHHHHHhcCcc
Q psy10599 93 YEEL---RRKVHQVLYEPK 108 (112)
Q Consensus 93 ~~~l---~~~l~~~l~~~~ 108 (112)
.+.+ .+.+.++..++.
T Consensus 316 ~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 316 EAALAAAALALLDLLLDPE 334 (353)
T ss_pred HHHHHHHHHHHHhccCChH
Confidence 6666 455555555543
No 85
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.26 E-value=0.001 Score=50.10 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=60.2
Q ss_pred CCCcEEEecCCChhhhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHc------Cceeeec
Q psy10599 18 TAAVYSIFDSFVHFSSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE------GYGLMVD 87 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~------g~g~~l~ 87 (112)
+.+++.+.+...-.+++ .++|++|... -..+++||+++|+|+|.-... ...+.+.+. ..|..+.
T Consensus 352 l~~~V~f~G~~~v~~~l--~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 352 LEDNVKFTGFQNVKEYL--PKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEGADDEALGPAGEVVP 425 (475)
T ss_pred CCCeEEEcCCccHHHHH--HhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcCCcccccCCceEEEC
Confidence 45788888855556677 6899988653 347899999999999985432 222334432 2677776
Q ss_pred CCCCCHHHHHHHHHHHhcCcccc
Q psy10599 88 FDVFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~l~~~~~~ 110 (112)
. .+.+++.+++.++++|++.+
T Consensus 426 ~--~d~~~la~ai~~ll~~~~~~ 446 (475)
T cd03813 426 P--ADPEALARAILRLLKDPELR 446 (475)
T ss_pred C--CCHHHHHHHHHHHhcCHHHH
Confidence 4 36899999999999887543
No 86
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.19 E-value=0.00066 Score=42.10 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=47.0
Q ss_pred CCcEEEecCCChh-hhcCCCCccEEEeCC-----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 19 AAVYSIFDSFVHF-SSSAHPKCRLFITHG-----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 19 ~~~~~~~~~~~~~-~~l~~~~~~~~I~hg-----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
.+++.+.+|++.. +++ ..+|++|... -.+++.|++++|+|+|..+. ......+..+.+..+. -+
T Consensus 52 ~~~v~~~g~~~e~~~~l--~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~~---~~ 121 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEIL--AAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLVA---ND 121 (135)
T ss_dssp HCTEEEE-S-HHHHHHH--HC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE-T---T-
T ss_pred CCCEEEcCCHHHHHHHH--HhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEEC---CC
Confidence 4589999998643 455 5678877632 24899999999999999865 1222333456676662 27
Q ss_pred HHHHHHHHHHHhcC
Q psy10599 93 YEELRRKVHQVLYE 106 (112)
Q Consensus 93 ~~~l~~~l~~~l~~ 106 (112)
++++.+++.++++|
T Consensus 122 ~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 122 PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999865
No 87
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.18 E-value=0.0018 Score=45.92 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=57.8
Q ss_pred cCCCcEEEecCCChh-hhcCCCCccEEEeCC-----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCC
Q psy10599 17 TTAAVYSIFDSFVHF-SSSAHPKCRLFITHG-----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~-~~l~~~~~~~~I~hg-----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
...+++.+.++.+.. .++ .++|++|.-. ..++++||+++|+|+|+....+ ..+.+.+...|..+..+
T Consensus 243 ~~~~~v~~~g~~~~~~~~l--~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~~~~- 315 (355)
T cd03819 243 GLQDRVTFVGHCSDMPAAY--ALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLVPPG- 315 (355)
T ss_pred CCcceEEEcCCcccHHHHH--HhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEeCCC-
Confidence 345689999986544 455 6789988754 2468999999999999864422 23445555578777643
Q ss_pred CCHHHHHHHHHHHhc-Ccc
Q psy10599 91 FDYEELRRKVHQVLY-EPK 108 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~-~~~ 108 (112)
+.+++.++|..++. +++
T Consensus 316 -~~~~l~~~i~~~~~~~~~ 333 (355)
T cd03819 316 -DAEALAQALDQILSLLPE 333 (355)
T ss_pred -CHHHHHHHHHHHHhhCHH
Confidence 68889999965553 443
No 88
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.18 E-value=0.0013 Score=49.07 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=59.3
Q ss_pred CCCcEEEecCCChhhh---cCCC--CccEEEeCC---C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecC
Q psy10599 18 TAAVYSIFDSFVHFSS---SAHP--KCRLFITHG---G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~---l~~~--~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~ 88 (112)
+.+++.+.++++..++ +... .+|++|... | ..+++||+++|+|+|.....+ ..+.+.+...|..+..
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~ 390 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDV 390 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCC
Confidence 4567888888775543 4111 238888653 3 468999999999999875432 3344444456777764
Q ss_pred CCCCHHHHHHHHHHHhcCccc
Q psy10599 89 DVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 89 ~~~~~~~l~~~l~~~l~~~~~ 109 (112)
. +++++.+++.+++++++.
T Consensus 391 ~--d~~~la~~i~~ll~~~~~ 409 (439)
T TIGR02472 391 L--DLEAIASALEDALSDSSQ 409 (439)
T ss_pred C--CHHHHHHHHHHHHhCHHH
Confidence 3 688999999999987653
No 89
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.12 E-value=0.0023 Score=47.41 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=54.9
Q ss_pred cEEEe-cCCChhh---hcCCCCccEEEe----CCC---hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 21 VYSIF-DSFVHFS---SSAHPKCRLFIT----HGG---VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 21 ~~~~~-~~~~~~~---~l~~~~~~~~I~----hgG---~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
++.+. +|+|..+ ++ ..+|++++ .-| .+.+.||+++|+|+|..... ...+.+++...|..+.
T Consensus 295 ~~~~~~g~~~~~~~~~~l--~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~-- 366 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLL--ASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG-- 366 (415)
T ss_pred cEEEEcCcCCHHHHHHHH--HhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC--
Confidence 45444 6887543 45 68899884 112 45799999999999986432 3445666667788873
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy10599 90 VFDYEELRRKVHQVLYE 106 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~ 106 (112)
+.+++.+++.+++++
T Consensus 367 --d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 --DSEELAEQLIDLLSN 381 (415)
T ss_pred --CHHHHHHHHHHHHhc
Confidence 689999999999988
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=97.09 E-value=0.0041 Score=45.41 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=52.9
Q ss_pred CcEEEec-CCChhh---hcCCCCccEEEeC------CC-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecC
Q psy10599 20 AVYSIFD-SFVHFS---SSAHPKCRLFITH------GG-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 20 ~~~~~~~-~~~~~~---~l~~~~~~~~I~h------gG-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~ 88 (112)
.|+.+.. |+|..+ ++ ..+|++|.. -| .+.+.||+++|+|+|.....+ ..+.+++-+.|..+.
T Consensus 286 ~~v~~~~~~~~~~~~~~~l--~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg----~~eiv~~g~~G~lv~- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLL--GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IGELVKDGKNGLLFS- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHH--HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC----hHHHccCCCCeEEEC-
Confidence 3566555 787644 36 789999841 11 357999999999999975322 455666667888875
Q ss_pred CCCCHHHHHHHHHHHh
Q psy10599 89 DVFDYEELRRKVHQVL 104 (112)
Q Consensus 89 ~~~~~~~l~~~l~~~l 104 (112)
+.+++.+++.+++
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 4788999988764
No 91
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.09 E-value=0.0027 Score=45.88 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=56.1
Q ss_pred cEEE-ecCCChh---hhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 21 VYSI-FDSFVHF---SSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 21 ~~~~-~~~~~~~---~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
++.+ .++++.. .++ ..+|++|.-. ...+++||+++|+|+|.....+ ..+.++....|..++.++.+
T Consensus 261 ~v~~~~~~~~~~~~~~~~--~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~ 334 (388)
T TIGR02149 261 GIIWINKMLPKEELVELL--SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG----IPEVVVDGETGFLVPPDNSD 334 (388)
T ss_pred ceEEecCCCCHHHHHHHH--HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC----HHHHhhCCCceEEcCCCCCc
Confidence 3544 3567743 345 6899998753 2467799999999999875432 34455556678887654321
Q ss_pred ----HHHHHHHHHHHhcCccc
Q psy10599 93 ----YEELRRKVHQVLYEPKY 109 (112)
Q Consensus 93 ----~~~l~~~l~~~l~~~~~ 109 (112)
.+.+.++|.+++++++.
T Consensus 335 ~~~~~~~l~~~i~~l~~~~~~ 355 (388)
T TIGR02149 335 ADGFQAELAKAINILLADPEL 355 (388)
T ss_pred ccchHHHHHHHHHHHHhCHHH
Confidence 27899999999887653
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.02 E-value=0.00033 Score=49.46 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=57.1
Q ss_pred cCCCcEEEecCCChh---hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 17 TTAAVYSIFDSFVHF---SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~---~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
..+.++.+.+++|.. .++ ..+|+++.. |...++.||+++|+|+|.....+- .+.+. ..|..+...
T Consensus 250 ~~~~~v~~~g~~~~~~~~~~~--~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~----~e~~~--~~~~~~~~~ 321 (365)
T cd03809 250 GLGDRVRFLGYVSDEELAALY--RGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSL----PEVAG--DAALYFDPL 321 (365)
T ss_pred CCCCeEEECCCCChhHHHHHH--hhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCc----cceec--CceeeeCCC
Confidence 456789999999865 355 578887754 234678999999999998644211 11111 234444432
Q ss_pred CCCHHHHHHHHHHHhcCcccc
Q psy10599 90 VFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+++.+++.+++.|++.+
T Consensus 322 --~~~~~~~~i~~l~~~~~~~ 340 (365)
T cd03809 322 --DPEALAAAIERLLEDPALR 340 (365)
T ss_pred --CHHHHHHHHHHHhcCHHHH
Confidence 6889999999998887654
No 93
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.84 E-value=0.0055 Score=45.04 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=55.6
Q ss_pred CcEEEecCCChhh---hcCCCCccEEEe--CCC------hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecC
Q psy10599 20 AVYSIFDSFVHFS---SSAHPKCRLFIT--HGG------VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 20 ~~~~~~~~~~~~~---~l~~~~~~~~I~--hgG------~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~ 88 (112)
.|+.+.+|+|..+ ++ ..+|+++. ..+ -+.+.|++++|+|+|.....+... .+.+. +.|+.+..
T Consensus 284 ~~v~f~G~~~~~~~~~~~--~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~--~~~i~--~~G~~~~~ 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALL--KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTEL--GQLVE--GIGVCVEP 357 (412)
T ss_pred CceEEeCCCCHHHHHHHH--HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchH--HHHHh--CCcEEeCC
Confidence 4799999998643 45 56777553 222 134689999999999986543211 12222 67887764
Q ss_pred CCCCHHHHHHHHHHHhcCccc
Q psy10599 89 DVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 89 ~~~~~~~l~~~l~~~l~~~~~ 109 (112)
+ +.+++.++|.++++++..
T Consensus 358 ~--d~~~la~~i~~l~~~~~~ 376 (412)
T PRK10307 358 E--SVEALVAAIAALARQALL 376 (412)
T ss_pred C--CHHHHHHHHHHHHhCHHH
Confidence 3 688999999999887654
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.74 E-value=0.009 Score=47.47 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=58.2
Q ss_pred CCCcEEEecCCChhh-hcCCCCccEEEe---CCC-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 18 TAAVYSIFDSFVHFS-SSAHPKCRLFIT---HGG-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~-~l~~~~~~~~I~---hgG-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
+.+++.+.+|.+... ++ ..+|++|. +.| .++++||+++|+|+|.....+ ..+.+.+-..|..+..++.+
T Consensus 572 L~~~V~flG~~~dv~~ll--~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 572 MGERILFTGLSRRVGYWL--TQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVT 645 (694)
T ss_pred CCCcEEEcCCcchHHHHH--HhcCEEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCC
Confidence 457899999987644 45 67899886 344 588999999999999975432 33445555578888766666
Q ss_pred HHHHHHHHHHHhc
Q psy10599 93 YEELRRKVHQVLY 105 (112)
Q Consensus 93 ~~~l~~~l~~~l~ 105 (112)
.+++.+++.+++.
T Consensus 646 ~~~La~aL~~ll~ 658 (694)
T PRK15179 646 APDVAEALARIHD 658 (694)
T ss_pred hHHHHHHHHHHHh
Confidence 6677777766654
No 95
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.73 E-value=0.016 Score=42.22 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=46.9
Q ss_pred ChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHh
Q psy10599 29 VHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVL 104 (112)
Q Consensus 29 ~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l 104 (112)
+..+++ ..||++|+-|| +...||...|+|.|-+ +.++-...-+++.+.|.-.... +.+++.+.+++.+
T Consensus 241 d~~~Ll--~~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 241 DGLDLL--YYADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVRKNL 308 (335)
T ss_pred CHHHHH--HhcCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHHHhh
Confidence 344677 57999999777 6677999999999986 2233333446678888744433 5777777666554
No 96
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.62 E-value=0.015 Score=42.63 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCCcEEEecCCChhh---hcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCC
Q psy10599 18 TAAVYSIFDSFVHFS---SSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~---~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
..+++.+.+|+|..+ ++ +.+|+++... | ..++.||+++|+|+|.-+..+- .+.+.+ |.+....
T Consensus 248 l~~~v~~~G~~~~~~~~~~l--~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~-~~~~~~~--- 317 (398)
T cd03796 248 LQDRVELLGAVPHERVRDVL--VQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP-DMILLAE--- 317 (398)
T ss_pred CCCeEEEeCCCCHHHHHHHH--HhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC-CceeecC---
Confidence 456799999998543 55 6789988643 2 2589999999999998765321 122322 3333332
Q ss_pred CCHHHHHHHHHHHhcCc
Q psy10599 91 FDYEELRRKVHQVLYEP 107 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~ 107 (112)
.+.+++.+++.+++.++
T Consensus 318 ~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 PDVESIVRKLEEAISIL 334 (398)
T ss_pred CCHHHHHHHHHHHHhCh
Confidence 26788999999888653
No 97
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.49 E-value=0.014 Score=42.22 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=55.4
Q ss_pred CCCcEEEecCC--Chh---hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecC
Q psy10599 18 TAAVYSIFDSF--VHF---SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 18 ~~~~~~~~~~~--~~~---~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~ 88 (112)
..+++.+.++. +.. .++ ..+|+++...- ..++.||+++|+|+|.....+ ....+.+...|...+
T Consensus 250 ~~~~v~~~~~~~~~~~~~~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~- 322 (372)
T cd03792 250 GDPDIHVLTLPPVSDLEVNALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD- 322 (372)
T ss_pred CCCCeEEEecCCCCHHHHHHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC-
Confidence 45578788876 432 345 68999986542 458999999999999875432 123344445666654
Q ss_pred CCCCHHHHHHHHHHHhcCcccc
Q psy10599 89 DVFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 89 ~~~~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+.+..++.+++.+++.+
T Consensus 323 ---~~~~~a~~i~~ll~~~~~~ 341 (372)
T cd03792 323 ---TVEEAAVRILYLLRDPELR 341 (372)
T ss_pred ---CcHHHHHHHHHHHcCHHHH
Confidence 3566777888888776543
No 98
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.41 E-value=0.0052 Score=43.63 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=51.3
Q ss_pred cCCCcEEEecCCChhh---hcCCCCccEEEeCCCh-----hHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecC
Q psy10599 17 TTAAVYSIFDSFVHFS---SSAHPKCRLFITHGGV-----HSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~l~~~~~~~~I~hgG~-----~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~ 88 (112)
...+++.+.+++++.+ ++ ..+|+++.+.-. +++.||+++|+|+|.....+. .+.+.. .|.....
T Consensus 245 ~~~~~V~~~g~~~~~~~~~~~--~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~ 316 (363)
T cd04955 245 AADPRIIFVGPIYDQELLELL--RYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKV 316 (363)
T ss_pred CCCCcEEEccccChHHHHHHH--HhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecC
Confidence 4567899999998754 45 567777765433 578999999999998754321 111122 2333432
Q ss_pred CCCCHHHHHHHHHHHhcCcc
Q psy10599 89 DVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 89 ~~~~~~~l~~~l~~~l~~~~ 108 (112)
. .. +.+++.+++++++
T Consensus 317 ~---~~-l~~~i~~l~~~~~ 332 (363)
T cd04955 317 G---DD-LASLLEELEADPE 332 (363)
T ss_pred c---hH-HHHHHHHHHhCHH
Confidence 1 12 8888888887754
No 99
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=96.30 E-value=0.019 Score=40.32 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=53.5
Q ss_pred CCcEEEecCCChhh---hcCCCCccEEEeC----CC-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCC
Q psy10599 19 AAVYSIFDSFVHFS---SSAHPKCRLFITH----GG-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 19 ~~~~~~~~~~~~~~---~l~~~~~~~~I~h----gG-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
.+++.+.++++..+ ++ ..+|+++.. -| ..++.||+++|+|+|.....+ ..+.+.+...|...+.
T Consensus 223 ~~~v~~~G~~~~~~~~~~~--~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~~-- 294 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELL--GNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVDS-- 294 (335)
T ss_pred CCcEEEeCCCCHHHHHHHH--HhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeCC--
Confidence 57899999998753 45 678887753 23 467999999999999876532 2233333336766652
Q ss_pred CCHHHHHHHHHHHhc
Q psy10599 91 FDYEELRRKVHQVLY 105 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~ 105 (112)
.+++.+++.+++.
T Consensus 295 --~~~l~~~l~~l~~ 307 (335)
T cd03802 295 --VEELAAAVARADR 307 (335)
T ss_pred --HHHHHHHHHHHhc
Confidence 7888888888754
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.16 E-value=0.0019 Score=47.06 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=51.4
Q ss_pred hhhccCCCcEEEecCCChh---hhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 13 ADCKTTAAVYSIFDSFVHF---SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
+..++. +|+.+.+-++.. .++ ..++++|+-.| |-.-||.++|+|+|.+=..++.+. ....|..+.+.
T Consensus 233 ~~l~~~-~~v~~~~~l~~~~~l~ll--~~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe----~r~~~~nvlv~-- 302 (346)
T PF02350_consen 233 EKLKKY-DNVRLIEPLGYEEYLSLL--KNADLVVGDSS-GIQEEAPSLGKPVVNIRDSGERQE----GRERGSNVLVG-- 302 (346)
T ss_dssp HHHTT--TTEEEE----HHHHHHHH--HHESEEEESSH-HHHHHGGGGT--EEECSSS-S-HH----HHHTTSEEEET--
T ss_pred HHhccc-CCEEEECCCCHHHHHHHH--hcceEEEEcCc-cHHHHHHHhCCeEEEecCCCCCHH----HHhhcceEEeC--
Confidence 334455 488888877654 466 67999999999 544499999999999922222222 23345555543
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy10599 90 VFDYEELRRKVHQVLYE 106 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~ 106 (112)
.+.+++.+++++++++
T Consensus 303 -~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 303 -TDPEAIIQAIEKALSD 318 (346)
T ss_dssp -SSHHHHHHHHHHHHH-
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 4799999999999876
No 101
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.11 E-value=0.019 Score=43.19 Aligned_cols=82 Identities=6% Similarity=0.036 Sum_probs=53.9
Q ss_pred ccCCCcEEEecCCChh---hhcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHc------Cc
Q psy10599 16 KTTAAVYSIFDSFVHF---SSSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE------GY 82 (112)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~------g~ 82 (112)
.+.+.++.+...++.. .++ +.+|+++... | ..+.+||+++|+|+|+-...+ ..+.+.+. +.
T Consensus 342 ~~~~~~v~~~~~~~~~~~~~~~--~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~ 415 (473)
T TIGR02095 342 ERYPGNVRVIIGYDEALAHLIY--AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGT 415 (473)
T ss_pred HHCCCcEEEEEcCCHHHHHHHH--HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCc
Confidence 3456677666555543 345 7899999753 2 357889999999999864422 11122222 67
Q ss_pred eeeecCCCCCHHHHHHHHHHHhc
Q psy10599 83 GLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 83 g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
|..+.. .+++++.++|.+++.
T Consensus 416 G~l~~~--~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 416 GFLFEE--YDPGALLAALSRALR 436 (473)
T ss_pred eEEeCC--CCHHHHHHHHHHHHH
Confidence 877764 368889999988876
No 102
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.10 E-value=0.043 Score=40.02 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=51.2
Q ss_pred CCcEEEecCCChhh---hcCCCCccEEEeC--------CC-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeee
Q psy10599 19 AAVYSIFDSFVHFS---SSAHPKCRLFITH--------GG-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 19 ~~~~~~~~~~~~~~---~l~~~~~~~~I~h--------gG-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l 86 (112)
.+|+.+.+++|..+ .+ ..+|++|.. ++ -+.+.|++++|+|+|..+.. ...+..+.+...
T Consensus 253 ~~nV~~~G~~~~~~l~~~l--~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYL--AGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYEDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHH--HhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcCcEEEe
Confidence 46899999998554 45 568887753 22 24589999999999987531 122222333333
Q ss_pred cCCCCCHHHHHHHHHHHhcCc
Q psy10599 87 DFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 87 ~~~~~~~~~l~~~l~~~l~~~ 107 (112)
. -+.+++.++|.+++.++
T Consensus 324 ~---~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---DDPEEFVAAIEKALLED 341 (373)
T ss_pred C---CCHHHHHHHHHHHHhcC
Confidence 2 26899999999976543
No 103
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.96 E-value=0.042 Score=42.10 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=57.5
Q ss_pred CCCcEEEecCCChhhhcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC--CC
Q psy10599 18 TAAVYSIFDSFVHFSSSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD--VF 91 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~--~~ 91 (112)
+.+++.+.++.+..+++ ..+|++|.-. | ..+++||+++|+|+|.....+. +.+.++.-..|..+... .-
T Consensus 374 l~~~V~f~G~~~~~~~~--~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 374 AQDYIHLKGHRNLSEVY--KDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFIEDNKNGYLIPIDEEED 448 (500)
T ss_pred CCCeEEEcCCCCHHHHH--HhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHccCCCCEEEEeCCcccc
Confidence 35678888988777777 6788888643 2 5789999999999999754211 23344444467776521 11
Q ss_pred C----HHHHHHHHHHHhcC
Q psy10599 92 D----YEELRRKVHQVLYE 106 (112)
Q Consensus 92 ~----~~~l~~~l~~~l~~ 106 (112)
+ .++++++|.+++++
T Consensus 449 d~~~~~~~la~~I~~ll~~ 467 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNS 467 (500)
T ss_pred chhHHHHHHHHHHHHHhCh
Confidence 2 67789999888843
No 104
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=95.89 E-value=0.028 Score=46.52 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=59.7
Q ss_pred cCCCcEEEecCCChhh---hcCCCCc----cEEEeCC---C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceee
Q psy10599 17 TTAAVYSIFDSFVHFS---SSAHPKC----RLFITHG---G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLM 85 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~l~~~~~----~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~ 85 (112)
.+.+++.+.+++++.+ ++ ..+ |+||... | ..+++||+++|+|+|.-...+ ..+.+..-..|+.
T Consensus 545 gL~g~V~FlG~v~~edvp~lY--r~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlL 618 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIY--RLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLL 618 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHH--HHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEE
Confidence 3457888889887654 33 233 6888753 2 478899999999999986432 1123333346777
Q ss_pred ecCCCCCHHHHHHHHHHHhcCcccc
Q psy10599 86 VDFDVFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 86 l~~~~~~~~~l~~~l~~~l~~~~~~ 110 (112)
++. .+++.|.++|.+++.++..+
T Consensus 619 VdP--~D~eaLA~AL~~LL~Dpelr 641 (1050)
T TIGR02468 619 VDP--HDQQAIADALLKLVADKQLW 641 (1050)
T ss_pred ECC--CCHHHHHHHHHHHhhCHHHH
Confidence 764 36889999999999887654
No 105
>PLN02846 digalactosyldiacylglycerol synthase
Probab=95.83 E-value=0.057 Score=41.09 Aligned_cols=74 Identities=11% Similarity=-0.046 Sum_probs=49.4
Q ss_pred EEecCCChhhhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHH
Q psy10599 23 SIFDSFVHFSSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRR 98 (112)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~ 98 (112)
.+.++.+..+++ ..+|+||.-+ -..+++||+++|+|+|..-.... ..+.+.+.|.... +.+++.+
T Consensus 287 vf~G~~~~~~~~--~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~~ng~~~~----~~~~~a~ 355 (462)
T PLN02846 287 VYPGRDHADPLF--HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQFPNCRTYD----DGKGFVR 355 (462)
T ss_pred EECCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecCCceEecC----CHHHHHH
Confidence 355665666667 6789999874 35788999999999999854321 3333334443332 5677888
Q ss_pred HHHHHhcCc
Q psy10599 99 KVHQVLYEP 107 (112)
Q Consensus 99 ~l~~~l~~~ 107 (112)
++.++|.++
T Consensus 356 ai~~~l~~~ 364 (462)
T PLN02846 356 ATLKALAEE 364 (462)
T ss_pred HHHHHHccC
Confidence 888877643
No 106
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=95.80 E-value=0.014 Score=44.31 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=37.1
Q ss_pred CCcEEEecCCChhhhc-CCCCccEEEe---CCChhHHHHHHHhCCCeEeecCc-cchHHHHHHHHHcCceeeec
Q psy10599 19 AAVYSIFDSFVHFSSS-AHPKCRLFIT---HGGVHSAFESIYHAVPMVIVPLF-ADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 19 ~~~~~~~~~~~~~~~l-~~~~~~~~I~---hgG~~t~~ea~~~g~P~i~vP~~-~dq~~na~~~~~~g~g~~l~ 87 (112)
++++.+.+..+..+.+ .+..+|+++- .+|.+|.+||+++|+|+|..|-. .-...-+..+...|+.-.+-
T Consensus 341 ~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA 414 (468)
T PF13844_consen 341 PDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA 414 (468)
T ss_dssp GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-
T ss_pred hhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC
Confidence 4678888877755432 2256888764 46788999999999999999843 22344455667777765554
No 107
>PLN02501 digalactosyldiacylglycerol synthase
Probab=95.80 E-value=0.049 Score=43.61 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=52.5
Q ss_pred cEEEecCCChh-hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHH
Q psy10599 21 VYSIFDSFVHF-SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95 (112)
Q Consensus 21 ~~~~~~~~~~~-~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~ 95 (112)
++.+.++.+.. +++ ..+|+||.-.- ..+++||+++|+|+|.....+... +..-+.|. +. -+.++
T Consensus 602 ~V~FLG~~dd~~~ly--asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGl-l~---~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSL--HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCL-TY---KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeE-ec---CCHHH
Confidence 46677777654 466 78999987532 578889999999999986544321 22222332 22 26888
Q ss_pred HHHHHHHHhcCcc
Q psy10599 96 LRRKVHQVLYEPK 108 (112)
Q Consensus 96 l~~~l~~~l~~~~ 108 (112)
+.+++.+++.++.
T Consensus 671 fAeAI~~LLsd~~ 683 (794)
T PLN02501 671 FVAKVKEALANEP 683 (794)
T ss_pred HHHHHHHHHhCch
Confidence 9999999998764
No 108
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.79 E-value=0.041 Score=41.00 Aligned_cols=82 Identities=6% Similarity=-0.104 Sum_probs=55.9
Q ss_pred CCCcEEEecCCChhh---hcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHH---HcCceeeec
Q psy10599 18 TAAVYSIFDSFVHFS---SSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAE---EEGYGLMVD 87 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~---~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~---~~g~g~~l~ 87 (112)
+.+++.+.+++|..+ ++ ..+|++|+.. =..++.||+++|+|+|..-..+.- .+.+. .-..|....
T Consensus 303 l~~~V~f~g~v~~~~l~~~l--~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~ 377 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEEL--STASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS 377 (419)
T ss_pred CCCeEEEecCCCHHHHHHHH--HhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCceEEeC
Confidence 457899999998654 56 5788877532 135788999999999986432211 11122 234666642
Q ss_pred CCCCCHHHHHHHHHHHhcCcc
Q psy10599 88 FDVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~l~~~~ 108 (112)
+++++.+++.+++++++
T Consensus 378 ----d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 378 ----TAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----CHHHHHHHHHHHHhCCH
Confidence 78999999999998653
No 109
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.58 E-value=0.037 Score=39.85 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred cCCCcEEEecCCChhhhc--CCCCccEEEeCC-------C------hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcC
Q psy10599 17 TTAAVYSIFDSFVHFSSS--AHPKCRLFITHG-------G------VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEG 81 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l--~~~~~~~~I~hg-------G------~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g 81 (112)
...+|+.+.+|+|..++. ......++.... . -+-+.+.+++|+|+|+.+. ...++.+++.+
T Consensus 204 ~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~----~~~~~~V~~~~ 279 (333)
T PRK09814 204 ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSK----AAIADFIVENG 279 (333)
T ss_pred ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCC----ccHHHHHHhCC
Confidence 345689999999976642 112222222211 1 1226678999999998643 56778888999
Q ss_pred ceeeecCCCCCHHHHHHHHHHH
Q psy10599 82 YGLMVDFDVFDYEELRRKVHQV 103 (112)
Q Consensus 82 ~g~~l~~~~~~~~~l~~~l~~~ 103 (112)
+|+.++ +.+++.+++.++
T Consensus 280 ~G~~v~----~~~el~~~l~~~ 297 (333)
T PRK09814 280 LGFVVD----SLEELPEIIDNI 297 (333)
T ss_pred ceEEeC----CHHHHHHHHHhc
Confidence 999986 466788777765
No 110
>PRK14098 glycogen synthase; Provisional
Probab=95.57 E-value=0.044 Score=41.78 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=55.2
Q ss_pred hccCCCcEEEecCCChh---hhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCcc--chHHHHHHHHHcCceee
Q psy10599 15 CKTTAAVYSIFDSFVHF---SSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFA--DQKQNGQKAEEEGYGLM 85 (112)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~--dq~~na~~~~~~g~g~~ 85 (112)
.++.++++.+..+++.. .++ +.+|+++...= ..+.+||+++|+|.|+....+ |...+ .....+.|..
T Consensus 357 ~~~~~~~V~~~g~~~~~~~~~~~--a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l 432 (489)
T PRK14098 357 AEEHPEQVSVQTEFTDAFFHLAI--AGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFI 432 (489)
T ss_pred HHHCCCCEEEEEecCHHHHHHHH--HhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeE
Confidence 34567789888888764 456 78999987542 357789999999988765422 21110 0112356777
Q ss_pred ecCCCCCHHHHHHHHHHHh
Q psy10599 86 VDFDVFDYEELRRKVHQVL 104 (112)
Q Consensus 86 l~~~~~~~~~l~~~l~~~l 104 (112)
+.. .+++++.++|.+++
T Consensus 433 ~~~--~d~~~la~ai~~~l 449 (489)
T PRK14098 433 FHD--YTPEALVAKLGEAL 449 (489)
T ss_pred eCC--CCHHHHHHHHHHHH
Confidence 754 36888998888764
No 111
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.53 E-value=0.035 Score=43.48 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=50.3
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC-ccchHHHHHHHHHc-----C-----ceee-----ec-CCCCCH
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL-FADQKQNGQKAEEE-----G-----YGLM-----VD-FDVFDY 93 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~-~~dq~~na~~~~~~-----g-----~g~~-----l~-~~~~~~ 93 (112)
.+++ ..||+.+.-.|.-| +|++..|+|++++=. ..=...-++++.+. + ++.. +. .+++++
T Consensus 483 ~~~m--~aaD~aLaaSGTaT-LEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELM--RECDCALAKCGTIV-LETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHH--HhcCeeeecCCHHH-HHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 4666 68999999999655 599999999999732 22223344555541 0 1111 21 346789
Q ss_pred HHHHHHHHHHhcCccccc
Q psy10599 94 EELRRKVHQVLYEPKYVG 111 (112)
Q Consensus 94 ~~l~~~l~~~l~~~~~~~ 111 (112)
+++.+++ ++|.|+++++
T Consensus 560 e~La~~l-~lL~d~~~r~ 576 (608)
T PRK01021 560 EEVAAAL-DILKTSQSKE 576 (608)
T ss_pred HHHHHHH-HHhcCHHHHH
Confidence 9999986 7777776543
No 112
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.42 E-value=0.037 Score=36.22 Aligned_cols=51 Identities=6% Similarity=0.039 Sum_probs=39.1
Q ss_pred cCCCcEEEecCCCh---hhhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCcc
Q psy10599 17 TTAAVYSIFDSFVH---FSSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFA 68 (112)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~ 68 (112)
....|+.+.++++. ...+. ..+|++++... .+++.||+++|+|+|..+...
T Consensus 158 ~~~~~v~~~~~~~~~~~~~~~~-~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 158 LLLDRVIFLGGLDPEELLALLL-AAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CCcccEEEeCCCCcHHHHHHHh-hcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 44678999998732 23343 45999999886 789999999999999986643
No 113
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.38 E-value=0.033 Score=42.92 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=55.0
Q ss_pred CcEEEecCCCh---hhhcCCCCccEEEeCC---ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCH
Q psy10599 20 AVYSIFDSFVH---FSSSAHPKCRLFITHG---GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDY 93 (112)
Q Consensus 20 ~~~~~~~~~~~---~~~l~~~~~~~~I~hg---G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~ 93 (112)
..+.+.++.+. ...+ ..+.++|.-+ |.++..||+++|+|+|- ......++...=|..+. +.
T Consensus 409 ~~v~f~gy~~e~dl~~~~--~~arl~id~s~~eg~~~~ieAiS~GiPqIn-------yg~~~~V~d~~NG~li~----d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISAL--DKLRLIIDLSKEPDLYTQISGISAGIPQIN-------KVETDYVEHNKNGYIID----DI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHH--hhheEEEECCCCCChHHHHHHHHcCCCeee-------cCCceeeEcCCCcEEeC----CH
Confidence 57888888773 3456 6788888765 66799999999999991 11234455555566663 68
Q ss_pred HHHHHHHHHHhcCc
Q psy10599 94 EELRRKVHQVLYEP 107 (112)
Q Consensus 94 ~~l~~~l~~~l~~~ 107 (112)
.+|.+++..+|.++
T Consensus 476 ~~l~~al~~~L~~~ 489 (519)
T TIGR03713 476 SELLKALDYYLDNL 489 (519)
T ss_pred HHHHHHHHHHHhCH
Confidence 88999999998776
No 114
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.26 E-value=0.052 Score=31.55 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCccccc
Q psy10599 45 HGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKYVG 111 (112)
Q Consensus 45 hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~~~~ 111 (112)
.|-..-+.|++++|+|+|.-+. ......+.+---++..+ +.+++.+++..+++|+..++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~~~~~~~~----~~~el~~~i~~ll~~~~~~~ 67 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDGEHIITYN----DPEELAEKIEYLLENPEERR 67 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCCCeEEEEC----CHHHHHHHHHHHHCCHHHHH
Confidence 4445688999999999999754 22223222222344443 79999999999999887553
No 115
>PHA01633 putative glycosyl transferase group 1
Probab=95.11 E-value=0.13 Score=37.49 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=55.2
Q ss_pred cCCCcEEEec---CCChh---hhcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecC------ccch------HHHH
Q psy10599 17 TTAAVYSIFD---SFVHF---SSSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPL------FADQ------KQNG 74 (112)
Q Consensus 17 ~~~~~~~~~~---~~~~~---~~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~------~~dq------~~na 74 (112)
..++++.+.+ +++.. +++ ..+|+++... | ..+++||+++|+|+|.--. .+++ ..+.
T Consensus 198 ~l~~~V~f~g~~G~~~~~dl~~~y--~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v 275 (335)
T PHA01633 198 EVPANVHFVAEFGHNSREYIFAFY--GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKV 275 (335)
T ss_pred CCCCcEEEEecCCCCCHHHHHHHH--HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCH
Confidence 4567888874 44533 445 6889999753 2 5778999999999988522 1221 2222
Q ss_pred HHHH--HcCceeeecCCCCCHHHHHHHHHHHhc
Q psy10599 75 QKAE--EEGYGLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 75 ~~~~--~~g~g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
..+. ..|.|..++ ..+++++.+++.+++.
T Consensus 276 ~~~~~~~~g~g~~~~--~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 276 EEYYDKEHGQKWKIH--KFQIEDMANAIILAFE 306 (335)
T ss_pred HHhcCcccCceeeec--CCCHHHHHHHHHHHHh
Confidence 2222 246666654 4589999999998853
No 116
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=94.66 E-value=0.064 Score=39.73 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=53.1
Q ss_pred ChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEee-cCccchHHHHHHHHHcCc-ee-------e----ecCCCCCHHH
Q psy10599 29 VHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV-PLFADQKQNGQKAEEEGY-GL-------M----VDFDVFDYEE 95 (112)
Q Consensus 29 ~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v-P~~~dq~~na~~~~~~g~-g~-------~----l~~~~~~~~~ 95 (112)
...+.+ ..+|+.+.-.|.- ++|+...|+|++++ -...=...-++++.+... +. . +-.++++++.
T Consensus 253 ~~~~~m--~~ad~al~~SGTa-TLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~ 329 (373)
T PF02684_consen 253 ESYDAM--AAADAALAASGTA-TLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPEN 329 (373)
T ss_pred chHHHH--HhCcchhhcCCHH-HHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHH
Confidence 345566 6789999988855 55999999999998 223333445566554321 11 1 1135678999
Q ss_pred HHHHHHHHhcCccc
Q psy10599 96 LRRKVHQVLYEPKY 109 (112)
Q Consensus 96 l~~~l~~~l~~~~~ 109 (112)
+..++.+++.|++.
T Consensus 330 i~~~~~~ll~~~~~ 343 (373)
T PF02684_consen 330 IAAELLELLENPEK 343 (373)
T ss_pred HHHHHHHHhcCHHH
Confidence 99999999988754
No 117
>PLN02949 transferase, transferring glycosyl groups
Probab=94.60 E-value=0.055 Score=41.06 Aligned_cols=80 Identities=10% Similarity=-0.034 Sum_probs=51.7
Q ss_pred CCCcEEEecCCChhh---hcCCCCccEEEeC---CC-hhHHHHHHHhCCCeEeecCcc---chHHHHHHHHHcCceeeec
Q psy10599 18 TAAVYSIFDSFVHFS---SSAHPKCRLFITH---GG-VHSAFESIYHAVPMVIVPLFA---DQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~---~l~~~~~~~~I~h---gG-~~t~~ea~~~g~P~i~vP~~~---dq~~na~~~~~~g~g~~l~ 87 (112)
+.+++.+.+++|..+ ++ .++++++.- -| ..++.||+++|+|+|.....+ |-.... ..-..|....
T Consensus 333 L~~~V~f~g~v~~~el~~ll--~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g~tG~l~~ 407 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLL--GGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQQTGFLAT 407 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHH--HhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCCcccccCC
Confidence 467899999998544 45 578888842 22 347899999999999985432 111100 0001243332
Q ss_pred CCCCCHHHHHHHHHHHhcC
Q psy10599 88 FDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~l~~ 106 (112)
+.+++.+++.+++++
T Consensus 408 ----~~~~la~ai~~ll~~ 422 (463)
T PLN02949 408 ----TVEEYADAILEVLRM 422 (463)
T ss_pred ----CHHHHHHHHHHHHhC
Confidence 688899999999874
No 118
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.48 E-value=0.23 Score=37.44 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=54.2
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceee-ecCCCCCHHHHHHHHHHHhcCc
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLM-VDFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~-l~~~~~~~~~l~~~l~~~l~~~ 107 (112)
.++ .+||++|..==++.+. |+..|+|++.+++. +.....+...|..-. .+.++++.++|.+.+.+++++.
T Consensus 323 ~iI--s~~dl~ig~RlHa~I~-a~~~gvP~i~i~Y~---~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 323 KIL--GACELTVGTRLHSAII-SMNFGTPAIAINYE---HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred HHH--hhCCEEEEecchHHHH-HHHcCCCEEEeeeh---HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCH
Confidence 567 7899999877666665 88899999999872 455566677887644 5667788889999999998764
No 119
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.42 E-value=0.077 Score=39.74 Aligned_cols=85 Identities=8% Similarity=0.045 Sum_probs=52.2
Q ss_pred cCCCcEEEecCCChh---hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCcc--chHHHHHHHHHcCceeeec
Q psy10599 17 TTAAVYSIFDSFVHF---SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFA--DQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~---~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~--dq~~na~~~~~~g~g~~l~ 87 (112)
+.++++.+....+.. .++ ..+|+++.. |-..+.+||+++|+|+|+....+ |...+.....+.|.|..+.
T Consensus 348 ~~~~~v~~~~~~~~~~~~~~~--~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~ 425 (476)
T cd03791 348 RYPGRVAVLIGYDEALAHLIY--AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFE 425 (476)
T ss_pred hCCCcEEEEEeCCHHHHHHHH--HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeC
Confidence 346677655444432 244 679999865 22357889999999999764421 2111111111345788876
Q ss_pred CCCCCHHHHHHHHHHHhc
Q psy10599 88 FDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~l~ 105 (112)
.. +.+++.+++.+++.
T Consensus 426 ~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 426 GY--NADALLAALRRALA 441 (476)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 43 58889999988764
No 120
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=94.29 E-value=0.14 Score=37.62 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=50.1
Q ss_pred CCcEEEecCCChh---hhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceee-ecCCCCCHH
Q psy10599 19 AAVYSIFDSFVHF---SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLM-VDFDVFDYE 94 (112)
Q Consensus 19 ~~~~~~~~~~~~~---~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~-l~~~~~~~~ 94 (112)
.+++.+.+-++.. .++ ..|+++|+-++.+. .||.+.|+|+|.+- +.+ ...+.|..+. + ..+++
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll--~~a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~v---g~~~~ 327 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLL--KNADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLRADSVIDV---DPDKE 327 (365)
T ss_pred CCCEEEECCCChHHHHHHH--HhCCEEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhhcCeEEEe---CCCHH
Confidence 3578888766644 456 67999999886555 89999999999773 211 1113343333 3 34688
Q ss_pred HHHHHHHHHhc
Q psy10599 95 ELRRKVHQVLY 105 (112)
Q Consensus 95 ~l~~~l~~~l~ 105 (112)
++.+++.++++
T Consensus 328 ~I~~a~~~~~~ 338 (365)
T TIGR03568 328 EIVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHHhC
Confidence 89999998553
No 121
>PRK00654 glgA glycogen synthase; Provisional
Probab=94.13 E-value=0.12 Score=39.01 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=52.0
Q ss_pred ccCCCcEEE-ecCCChh--hhcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCc--cchHHHHHHHHHcCceeee
Q psy10599 16 KTTAAVYSI-FDSFVHF--SSSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLF--ADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 16 ~~~~~~~~~-~~~~~~~--~~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~--~dq~~na~~~~~~g~g~~l 86 (112)
++.+.++.+ .+|-... .++ ..+|+++... | ..+.+||+++|+|.|+.... .|...+...-.+.+.|..+
T Consensus 333 ~~~~~~v~~~~g~~~~~~~~~~--~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv 410 (466)
T PRK00654 333 ARYPGKVGVQIGYDEALAHRIY--AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVF 410 (466)
T ss_pred HHCCCcEEEEEeCCHHHHHHHH--hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEe
Confidence 455666543 4553221 345 7899999752 2 35788999999999986432 1211111000223668777
Q ss_pred cCCCCCHHHHHHHHHHHhc
Q psy10599 87 DFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 87 ~~~~~~~~~l~~~l~~~l~ 105 (112)
... +++++.+++.+++.
T Consensus 411 ~~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 411 DDF--NAEDLLRALRRALE 427 (466)
T ss_pred CCC--CHHHHHHHHHHHHH
Confidence 643 67889998888764
No 122
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.13 E-value=0.12 Score=36.09 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=35.8
Q ss_pred CCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeec
Q psy10599 18 TAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP 65 (112)
.+..+.+.+-.+-.+++ ..||.+||-.+. +-+||+..|+|++++-
T Consensus 181 ~~~~~~~~~~~~~~~Ll--~~s~~VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 181 LPNVVIIDDDVNLYELL--EQSDAVVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred CCCeEEECCCCCHHHHH--HhCCEEEEECCH-HHHHHHHcCCceEEec
Confidence 34455566667888888 789999998875 5669999999999984
No 123
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.02 E-value=0.079 Score=39.29 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCcEEEec---CCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHH
Q psy10599 19 AAVYSIFD---SFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95 (112)
Q Consensus 19 ~~~~~~~~---~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~ 95 (112)
.+++++++ |.+...++ ..|.+++|-.|. ..-||...|+|++.+=...+++. ..+.|.-+.+. .+.+.
T Consensus 261 ~~~v~li~pl~~~~f~~L~--~~a~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg---~~~~~ 330 (383)
T COG0381 261 VERVKLIDPLGYLDFHNLM--KNAFLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG---TDEEN 330 (383)
T ss_pred CCcEEEeCCcchHHHHHHH--HhceEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC---ccHHH
Confidence 34566665 44556666 568899998884 46699999999999976667766 23344554543 46788
Q ss_pred HHHHHHHHhcCccccc
Q psy10599 96 LRRKVHQVLYEPKYVG 111 (112)
Q Consensus 96 l~~~l~~~l~~~~~~~ 111 (112)
+.+++.++++++++.+
T Consensus 331 i~~~~~~ll~~~~~~~ 346 (383)
T COG0381 331 ILDAATELLEDEEFYE 346 (383)
T ss_pred HHHHHHHHhhChHHHH
Confidence 9999999998866543
No 124
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.96 E-value=0.26 Score=38.52 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=45.6
Q ss_pred CCCcEEEecCCChh-hhcCCCCccEEEeC---CC-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 18 TAAVYSIFDSFVHF-SSSAHPKCRLFITH---GG-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~~I~h---gG-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
..+++.+.+|.+.. .++ ..+|++|.. -| .+++.||+++|+|+|..... -+.+.+.+-..|..++..
T Consensus 453 L~d~V~FlG~~~Dv~~~L--aaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~~ 523 (578)
T PRK15490 453 ILERILFVGASRDVGYWL--QKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDDA 523 (578)
T ss_pred CCCcEEECCChhhHHHHH--HhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECCC
Confidence 45789999987654 455 689999864 33 57899999999999987542 233444455567666543
No 125
>PRK14099 glycogen synthase; Provisional
Probab=93.91 E-value=0.16 Score=38.79 Aligned_cols=90 Identities=7% Similarity=0.033 Sum_probs=51.6
Q ss_pred cCCCcE-EEecCCChhhhcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCcc--chHHHHHH-HHH--cCceeee
Q psy10599 17 TTAAVY-SIFDSFVHFSSSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLFA--DQKQNGQK-AEE--EGYGLMV 86 (112)
Q Consensus 17 ~~~~~~-~~~~~~~~~~~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~--dq~~na~~-~~~--~g~g~~l 86 (112)
+.+.++ .+.+|-....-+..+.+|+++... | ..+.+||+++|+|.|+....+ |....... .+. .+.|..+
T Consensus 347 ~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 347 AYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred HCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 445555 567774433322224689998642 2 467889999998777653321 22111110 011 1467777
Q ss_pred cCCCCCHHHHHHHHHH---HhcCcc
Q psy10599 87 DFDVFDYEELRRKVHQ---VLYEPK 108 (112)
Q Consensus 87 ~~~~~~~~~l~~~l~~---~l~~~~ 108 (112)
+.. ++++|.+++.+ ++++++
T Consensus 427 ~~~--d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 427 SPV--TADALAAALRKTAALFADPV 449 (485)
T ss_pred CCC--CHHHHHHHHHHHHHHhcCHH
Confidence 643 68889999986 555543
No 126
>PLN00142 sucrose synthase
Probab=93.42 E-value=0.48 Score=38.58 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=52.8
Q ss_pred CCCcEEEecCC----ChhhhcC--CCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeec
Q psy10599 18 TAAVYSIFDSF----VHFSSSA--HPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 18 ~~~~~~~~~~~----~~~~~l~--~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~ 87 (112)
+.+++.+.+.. +..++.. ..++|+||.-. | ..++.||+++|+|+|.-...+ ..+.+++-..|..++
T Consensus 640 L~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~ 715 (815)
T PLN00142 640 LKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHID 715 (815)
T ss_pred CCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeC
Confidence 34677766542 2233321 12468888652 3 368999999999998865433 234444545688887
Q ss_pred CCCCCHHHHHHHHHHH----hcCcccc
Q psy10599 88 FDVFDYEELRRKVHQV----LYEPKYV 110 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~----l~~~~~~ 110 (112)
.. +++++.++|.++ +.|++.+
T Consensus 716 P~--D~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 716 PY--HGDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred CC--CHHHHHHHHHHHHHHhcCCHHHH
Confidence 53 577788877654 4565443
No 127
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.90 E-value=0.69 Score=32.74 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCccEEEeCCChhHHHHHHH------hCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIY------HAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~------~g~P~i~vP~ 66 (112)
..+|++|+-||=||++.++. .++|++.+..
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 35899999999999999975 4788888753
No 128
>PHA01630 putative group 1 glycosyl transferase
Probab=91.77 E-value=0.51 Score=34.26 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=44.0
Q ss_pred CChhh---hcCCCCccEEEeC---CC-hhHHHHHHHhCCCeEeecCcc--chHHH---HHHHH-----------HcCcee
Q psy10599 28 FVHFS---SSAHPKCRLFITH---GG-VHSAFESIYHAVPMVIVPLFA--DQKQN---GQKAE-----------EEGYGL 84 (112)
Q Consensus 28 ~~~~~---~l~~~~~~~~I~h---gG-~~t~~ea~~~g~P~i~vP~~~--dq~~n---a~~~~-----------~~g~g~ 84 (112)
+|..+ ++ ..+|+++.. .| ..++.||+++|+|+|.....+ |...+ ...+. ..++|.
T Consensus 198 v~~~~l~~~y--~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 198 LPDDDIYSLF--AGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred CCHHHHHHHH--HhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccc
Confidence 66433 45 688998842 22 568999999999999975432 22111 11110 023455
Q ss_pred eecCCCCCHHHHHHHHHHHhcC
Q psy10599 85 MVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 85 ~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
.+.. +.+++.+.+.+++.+
T Consensus 276 ~v~~---~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 276 FLDP---DIEDAYQKLLEALAN 294 (331)
T ss_pred ccCC---CHHHHHHHHHHHHhC
Confidence 5543 567777777777765
No 129
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.94 E-value=0.65 Score=33.59 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=38.7
Q ss_pred ChhhhcCCCCccEE-EeCCChhHHHHHHHhCCCeEeecCccchHH---HHHHHHHcCceeeec
Q psy10599 29 VHFSSSAHPKCRLF-ITHGGVHSAFESIYHAVPMVIVPLFADQKQ---NGQKAEEEGYGLMVD 87 (112)
Q Consensus 29 ~~~~~l~~~~~~~~-I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~---na~~~~~~g~g~~l~ 87 (112)
|...+| ..+|.+ ||--..+.++||+..|+|+.++|...-... -.+.+++.|+.....
T Consensus 221 Py~~~L--a~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFL--AAADAIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred cHHHHH--HhCCEEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECC
Confidence 356677 556665 555557999999999999999987651111 234456677776654
No 130
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.90 E-value=0.99 Score=32.63 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=36.5
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+=||=||++.++.. ++|++.+-.. .+|... +.+++++.+++.+++++
T Consensus 67 ~~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G-------------~lGFLt---~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG-------------HLGFLT---EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC-------------CCcccc---cCCHHHHHHHHHHHHcC
Confidence 368999999999999999764 7898888431 122222 23456666666666644
No 131
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=90.54 E-value=1.3 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeec
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP 65 (112)
..+|++|+-||=||+++++.. ++|++.+.
T Consensus 62 ~~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 62 ARADLAVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 468999999999999999764 67888774
No 132
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.43 E-value=2.3 Score=28.86 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=50.6
Q ss_pred CCcEEEecCCCh---hhhcCCCCccEEEeC---CCh-hHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 19 AAVYSIFDSFVH---FSSSAHPKCRLFITH---GGV-HSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 19 ~~~~~~~~~~~~---~~~l~~~~~~~~I~h---gG~-~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
..++.+.++++. ..++ ..+++++.. .|. .++.|+++.|+|+|.-... .....+...+.|......
T Consensus 256 ~~~v~~~g~~~~~~~~~~~--~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~~~-- 327 (381)
T COG0438 256 EDNVKFLGYVPDEELAELL--ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVPPG-- 327 (381)
T ss_pred CCcEEEecccCHHHHHHHH--HhCCEEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecCCC--
Confidence 367888888882 2344 457887777 243 4469999999999887543 111222222235433321
Q ss_pred CHHHHHHHHHHHhcCc
Q psy10599 92 DYEELRRKVHQVLYEP 107 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~ 107 (112)
+.+.+..++..+++++
T Consensus 328 ~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 328 DVEELADALEQLLEDP 343 (381)
T ss_pred CHHHHHHHHHHHhcCH
Confidence 5788888888887665
No 133
>PLN02939 transferase, transferring glycosyl groups
Probab=90.19 E-value=0.93 Score=37.65 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=53.2
Q ss_pred CCcEEEecCCChh---hhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCcc--chHHH--HHHH-HHcCceeee
Q psy10599 19 AAVYSIFDSFVHF---SSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFA--DQKQN--GQKA-EEEGYGLMV 86 (112)
Q Consensus 19 ~~~~~~~~~~~~~---~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~--dq~~n--a~~~-~~~g~g~~l 86 (112)
.+++.+..+++.. .++ +.+|+|+... -..+++||+++|+|.|+....+ |...+ ...+ ..-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IY--AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIY--AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHH--HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4578888888754 356 7899999753 2467899999999998765432 22211 0111 112457666
Q ss_pred cCCCCCHHHHHHHHHHHhc
Q psy10599 87 DFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 87 ~~~~~~~~~l~~~l~~~l~ 105 (112)
.. .+++.+..++.+++.
T Consensus 914 ~~--~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT--PDEQGLNSALERAFN 930 (977)
T ss_pred cC--CCHHHHHHHHHHHHH
Confidence 54 367888888877653
No 134
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.03 E-value=1.4 Score=31.64 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=24.0
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeec
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP 65 (112)
..+|++|+-||=||++.++.. ++|++.+-
T Consensus 63 ~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN 95 (287)
T PRK14077 63 KISDFLISLGGDGTLISLCRKAAEYDKFVLGIH 95 (287)
T ss_pred cCCCEEEEECCCHHHHHHHHHhcCCCCcEEEEe
Confidence 368999999999999988653 77888874
No 135
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.78 E-value=1.7 Score=31.77 Aligned_cols=54 Identities=19% Similarity=0.059 Sum_probs=34.8
Q ss_pred CChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceee
Q psy10599 28 FVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLM 85 (112)
Q Consensus 28 ~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~ 85 (112)
++..+++ -.++++|+-||. .-.||+..|+|.|.+= .+.-..--+++.+.|.-..
T Consensus 244 vD~l~Ll--yya~lvig~ggT-MarEaAlLGtpaIs~~-pGkll~vdk~lie~G~~~~ 297 (346)
T COG1817 244 VDTLSLL--YYATLVIGAGGT-MAREAALLGTPAISCY-PGKLLAVDKYLIEKGLLYH 297 (346)
T ss_pred ccHHHHH--hhhheeecCCch-HHHHHHHhCCceEEec-CCccccccHHHHhcCceee
Confidence 4455677 468999987764 4569999999999982 2222223345566665544
No 136
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.72 E-value=2 Score=30.96 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCeEeec
Q psy10599 37 PKCRLFITHGGVHSAFESIY----HAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~----~g~P~i~vP 65 (112)
..+|++|+=||=||++.++. .++|++.+-
T Consensus 67 ~~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN 99 (296)
T PRK04539 67 QYCDLVAVLGGDGTFLSVAREIAPRAVPIIGIN 99 (296)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCEEEEe
Confidence 36899999999999999875 378988884
No 137
>PRK10125 putative glycosyl transferase; Provisional
Probab=89.70 E-value=1.6 Score=32.58 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=44.3
Q ss_pred CcEEEecCCCh----hhhcCCCCccEEEeCCC----hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 20 AVYSIFDSFVH----FSSSAHPKCRLFITHGG----VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 20 ~~~~~~~~~~~----~~~l~~~~~~~~I~hgG----~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
.++...++... .+++ ..+|++|...- ..+++||+++|+|+|.....+- + +.+.. +.|..++..
T Consensus 286 ~~v~~~g~~~~~~~l~~~y--~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~-~---Eiv~~-~~G~lv~~~-- 356 (405)
T PRK10125 286 GNVVNHGFETDKRKLMSAL--NQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAA-R---EVLQK-SGGKTVSEE-- 356 (405)
T ss_pred cceEEecCcCCHHHHHHHH--HhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCCh-H---HhEeC-CcEEEECCC--
Confidence 35666666532 2344 57899887543 4789999999999999876441 1 22222 357777653
Q ss_pred CHHHHHHH
Q psy10599 92 DYEELRRK 99 (112)
Q Consensus 92 ~~~~l~~~ 99 (112)
+.++|++.
T Consensus 357 d~~~La~~ 364 (405)
T PRK10125 357 EVLQLAQL 364 (405)
T ss_pred CHHHHHhc
Confidence 45555554
No 138
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.70 E-value=1.3 Score=32.02 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=37.2
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+=||=||++.++.. ++|++.+... .+|... +..++++.+++.+++++
T Consensus 71 ~~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 71 DGCELVLVLGGDGTILRAAELARAADVPVLGVNLG-------------HVGFLA---EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC-------------CCceec---cCCHHHHHHHHHHHHcC
Confidence 468999999999999998764 7898888541 123332 23456666666666644
No 139
>PLN02929 NADH kinase
Probab=89.64 E-value=1.2 Score=32.24 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=44.7
Q ss_pred CCccEEEeCCChhHHHHHHHh---CCCeEeecCcc------chHHHHHHHH-HcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH---AVPMVIVPLFA------DQKQNGQKAE-EEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~---g~P~i~vP~~~------dq~~na~~~~-~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+-||=||++.++.. ++|++.+-... .++.|. +. .+..|.... .+.+++.++|.+++++
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~--~~~~r~lGfL~~---~~~~~~~~~L~~il~g 137 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE--FDARRSTGHLCA---ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc--cccccCcccccc---CCHHHHHHHHHHHHcC
Confidence 578999999999999988653 68998885421 122222 22 223565543 4678899999999865
Q ss_pred c
Q psy10599 107 P 107 (112)
Q Consensus 107 ~ 107 (112)
.
T Consensus 138 ~ 138 (301)
T PLN02929 138 R 138 (301)
T ss_pred C
Confidence 3
No 140
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.32 E-value=1.6 Score=31.41 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=37.0
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+=||=||++.++.. ++|++.+-... +|... +.+++++.+++.+++++
T Consensus 63 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFLt---~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 63 GSADMVISIGGDGTFLRTATYVGNSNIPILGINTGR-------------LGFLA---TVSKEEIEETIDELLNG 120 (292)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEecCC-------------CCccc---ccCHHHHHHHHHHHHcC
Confidence 368999999999999998763 78988884310 23222 23566677777776654
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.28 E-value=3.5 Score=31.38 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=49.4
Q ss_pred EEecCCChhh---hcCCCCccEEEeCC---C-hhHHHHHHHhCCC----eEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 23 SIFDSFVHFS---SSAHPKCRLFITHG---G-VHSAFESIYHAVP----MVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 23 ~~~~~~~~~~---~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P----~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
.+.+.++..+ ++ ..+|+++.-. | ..++.|++++|+| +|+--..+-.. .+ +.|+.+++ .
T Consensus 339 ~l~~~~~~~el~aly--~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~----~l---~~gllVnP--~ 407 (456)
T TIGR02400 339 YLNRSYDREELMALY--RAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ----EL---NGALLVNP--Y 407 (456)
T ss_pred EEcCCCCHHHHHHHH--HhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH----Hh---CCcEEECC--C
Confidence 3345566544 34 6899999743 5 4677899999999 66554433221 12 24667764 3
Q ss_pred CHHHHHHHHHHHhcCc
Q psy10599 92 DYEELRRKVHQVLYEP 107 (112)
Q Consensus 92 ~~~~l~~~l~~~l~~~ 107 (112)
+.++++++|.++++.+
T Consensus 408 d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 408 DIDGMADAIARALTMP 423 (456)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6889999999998754
No 142
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.13 E-value=0.92 Score=34.38 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=47.9
Q ss_pred EEecCCChhh---hcCCCCccEEEeC---CC-hhHHHHHHHhCCC---eEeecCccchHHHHHHHHHcCceeeecCCCCC
Q psy10599 23 SIFDSFVHFS---SSAHPKCRLFITH---GG-VHSAFESIYHAVP---MVIVPLFADQKQNGQKAEEEGYGLMVDFDVFD 92 (112)
Q Consensus 23 ~~~~~~~~~~---~l~~~~~~~~I~h---gG-~~t~~ea~~~g~P---~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~ 92 (112)
.+.++++..+ ++ ..+|++|.- -| ..++.||+++|+| ++++.....-... ...|+.+++ .+
T Consensus 344 ~~~g~v~~~el~~~y--~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~g~lv~p--~d 413 (460)
T cd03788 344 YLYRSLPREELAALY--RAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSGALLVNP--YD 413 (460)
T ss_pred EEeCCCCHHHHHHHH--HhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh------cCCCEEECC--CC
Confidence 3446777544 45 688998863 34 3567899999999 4444322111111 234666664 36
Q ss_pred HHHHHHHHHHHhcCc
Q psy10599 93 YEELRRKVHQVLYEP 107 (112)
Q Consensus 93 ~~~l~~~l~~~l~~~ 107 (112)
.+++.++|.++++++
T Consensus 414 ~~~la~ai~~~l~~~ 428 (460)
T cd03788 414 IDEVADAIHRALTMP 428 (460)
T ss_pred HHHHHHHHHHHHcCC
Confidence 889999999999865
No 143
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.98 E-value=2 Score=30.52 Aligned_cols=29 Identities=17% Similarity=0.317 Sum_probs=24.0
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeec
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP 65 (112)
..+|++|+=||=||++.++.. ++|++.+-
T Consensus 41 ~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 41 QRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 468999999999999987653 67888874
No 144
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=88.96 E-value=0.94 Score=36.84 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=53.4
Q ss_pred CCCcEEEecCC-Chh---hhcC--CCCccEEEeCC----ChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeec
Q psy10599 18 TAAVYSIFDSF-VHF---SSSA--HPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 18 ~~~~~~~~~~~-~~~---~~l~--~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~ 87 (112)
+.+++.+.++. +.. +++. ...+|+||.-. -..+++||+++|+|+|.-...+ ..+.+.+-..|..++
T Consensus 617 L~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVd 692 (784)
T TIGR02470 617 LHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHID 692 (784)
T ss_pred CCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeC
Confidence 45788888874 321 2221 12457888653 2478999999999999865432 334455555688886
Q ss_pred CCCCCHHHHHHHHHHHh
Q psy10599 88 FDVFDYEELRRKVHQVL 104 (112)
Q Consensus 88 ~~~~~~~~l~~~l~~~l 104 (112)
.. +++++.++|.+++
T Consensus 693 p~--D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 PY--HGEEAAEKIVDFF 707 (784)
T ss_pred CC--CHHHHHHHHHHHH
Confidence 53 6788888888765
No 145
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.94 E-value=1.5 Score=32.19 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=49.9
Q ss_pred EecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHH--H-HcCceeeecCCCCCHHHHHHHH
Q psy10599 24 IFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKA--E-EEGYGLMVDFDVFDYEELRRKV 100 (112)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~--~-~~g~g~~l~~~~~~~~~l~~~l 100 (112)
+..|-.+.++| ..+|+.+..+|.- .-.++-.|+|+|.+|-.+-|+.-.... . -.|+.+.+-.. .+..-..+.
T Consensus 299 ~lsqqsfadiL--H~adaalgmAGTA-tEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~--~aq~a~~~~ 373 (412)
T COG4370 299 WLSQQSFADIL--HAADAALGMAGTA-TEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP--EAQAAAQAV 373 (412)
T ss_pred EEeHHHHHHHH--HHHHHHHHhccch-HHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC--chhhHHHHH
Confidence 44455556666 4567766666632 234677899999999988886543322 2 25888776532 233333344
Q ss_pred HHHhcCcccc
Q psy10599 101 HQVLYEPKYV 110 (112)
Q Consensus 101 ~~~l~~~~~~ 110 (112)
++++.|+.+.
T Consensus 374 q~ll~dp~r~ 383 (412)
T COG4370 374 QELLGDPQRL 383 (412)
T ss_pred HHHhcChHHH
Confidence 4588887654
No 146
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.74 E-value=2.1 Score=30.14 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCccEEEeCCChhHHHHHHH-hCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIY-HAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~-~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+=||=||++.++. .++|++.+-... .|... +.+.+++.+++.++++.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGfl~---~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGFLS---SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Ccccc---ccCHHHHHHHHHHHHcC
Confidence 57899999999999998875 578888774210 23332 23566677777776654
No 147
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.20 E-value=2.3 Score=30.13 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=36.5
Q ss_pred CCccEEEeCCChhHHHHHHHh-----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH-----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~-----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+=||=||++.++.. .+|++.+...+ ..|.. .+.+.+++.+++.+++++
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---ccCCHHHHHHHHHHHHcC
Confidence 358999999999999999864 55666664311 23333 234566777777777644
No 148
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.83 E-value=1.8 Score=30.83 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=24.4
Q ss_pred CccEEEeCCChhHHHHHHHh---CCCeEeecC
Q psy10599 38 KCRLFITHGGVHSAFESIYH---AVPMVIVPL 66 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~---g~P~i~vP~ 66 (112)
.+|++|+-||-||+++++.. ++|++.+|.
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 68999999999999998843 568888875
No 149
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.75 E-value=2.3 Score=30.28 Aligned_cols=53 Identities=15% Similarity=0.367 Sum_probs=37.0
Q ss_pred CccEEEeCCChhHHHHHHH-hCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 38 KCRLFITHGGVHSAFESIY-HAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~-~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
.+|++|+=||-||++.++. ...|++.+-.. ..|... +.+.+++.+++.+++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFLT---EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccCc---ccCHHHHHHHHHHHHcC
Confidence 5899999999999999887 35687776330 123222 34667777778777754
No 150
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.25 E-value=2.7 Score=33.14 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=41.6
Q ss_pred hhhcCCCCccEEEeCC---C-hhHHHHHHHhCCCeEeecCcc-chHHHHHHHHHc-Cceeeec-CCC----CCHHHHHHH
Q psy10599 31 FSSSAHPKCRLFITHG---G-VHSAFESIYHAVPMVIVPLFA-DQKQNGQKAEEE-GYGLMVD-FDV----FDYEELRRK 99 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P~i~vP~~~-dq~~na~~~~~~-g~g~~l~-~~~----~~~~~l~~~ 99 (112)
.+++ ..||++|... | ..+++||+++|+|+|.....+ ..... +.+... ..|+.+. ... .+.++|.++
T Consensus 469 ~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 469 EEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred HHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHHH
Confidence 3445 6899998843 3 468999999999999986532 11111 112111 2355543 211 135567777
Q ss_pred HHHHhc
Q psy10599 100 VHQVLY 105 (112)
Q Consensus 100 l~~~l~ 105 (112)
+.++++
T Consensus 546 m~~~~~ 551 (590)
T cd03793 546 MYEFCQ 551 (590)
T ss_pred HHHHhC
Confidence 777763
No 151
>PLN02316 synthase/transferase
Probab=87.15 E-value=6.2 Score=33.30 Aligned_cols=84 Identities=8% Similarity=-0.016 Sum_probs=52.9
Q ss_pred CCcEEEecCCChh---hhcCCCCccEEEeCC----ChhHHHHHHHhCCCeEeecCcc--chHHHHH----HHH---HcCc
Q psy10599 19 AAVYSIFDSFVHF---SSSAHPKCRLFITHG----GVHSAFESIYHAVPMVIVPLFA--DQKQNGQ----KAE---EEGY 82 (112)
Q Consensus 19 ~~~~~~~~~~~~~---~~l~~~~~~~~I~hg----G~~t~~ea~~~g~P~i~vP~~~--dq~~na~----~~~---~~g~ 82 (112)
++++.+....+.. .++ +.+|+|+... =..+.+||+++|+|.|+-...+ |...... ..+ .-+.
T Consensus 899 ~~rV~f~g~~de~lah~iy--aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIY--AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHH--HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 5677766555543 355 7899999653 2467889999999998864321 2211110 001 1246
Q ss_pred eeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 83 GLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 83 g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
|..... .+++.|..+|.+++..
T Consensus 977 Gflf~~--~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 977 GFSFDG--ADAAGVDYALNRAISA 998 (1036)
T ss_pred eEEeCC--CCHHHHHHHHHHHHhh
Confidence 777763 4688888998888764
No 152
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.99 E-value=2.4 Score=30.40 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+=||=||++.++.. ++|++.+-.-. +|... +++++++.+++++++++
T Consensus 62 ~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl~---~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 62 QQADLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFLT---DLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCccc---ccCHHHHHHHHHHHHcC
Confidence 368999999999999999752 67877774310 23222 23566777777777654
No 153
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.48 E-value=0.94 Score=32.45 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=38.3
Q ss_pred cCCChhhhcCCCCccEEEeCCC-hhHHHHHHHhCCCeEee-c-Cc-cc-hHHHHHHHHHcCceeee
Q psy10599 26 DSFVHFSSSAHPKCRLFITHGG-VHSAFESIYHAVPMVIV-P-LF-AD-QKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 26 ~~~~~~~~l~~~~~~~~I~hgG-~~t~~ea~~~g~P~i~v-P-~~-~d-q~~na~~~~~~g~g~~l 86 (112)
++=|..++| +++|.+|+-.- .+.++||++.|+|+.+. | .+ .+ ...--+.+++++++...
T Consensus 234 g~NPY~~~L--a~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f 297 (329)
T COG3660 234 GYNPYIDML--AAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPF 297 (329)
T ss_pred CCCchHHHH--hhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhcccc
Confidence 445788888 77888776554 68889999999999887 3 22 11 12223445555655543
No 154
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.47 E-value=5.5 Score=29.55 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=59.1
Q ss_pred CcEEE-ecCCChh---hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 20 AVYSI-FDSFVHF---SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 20 ~~~~~-~~~~~~~---~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
+++.+ .+++|.. .+| .+||+.|-. =|.|+++-++..|+|+.+-- +..--..+.+.|+-+....+++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL--~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l~~~~ipVlf~~d~L 318 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALL--SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDLKEQGIPVLFYGDEL 318 (360)
T ss_pred cceeEhhhhCCHHHHHHHH--HhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHHHhCCCeEEeccccC
Confidence 46654 5788855 467 688987654 47899999999999999862 2233355677788877777788
Q ss_pred CHHHHHHHHHHHhc
Q psy10599 92 DYEELRRKVHQVLY 105 (112)
Q Consensus 92 ~~~~l~~~l~~~l~ 105 (112)
+...+.++=+++..
T Consensus 319 ~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 319 DEALVREAQRQLAN 332 (360)
T ss_pred CHHHHHHHHHHHhh
Confidence 98888888777753
No 155
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.25 E-value=3.3 Score=29.77 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=38.1
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
..+|++|+=||=||+++++.. ++|++.+... ..|.. .+.+++++.++|.+++++
T Consensus 61 ~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl---~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDLVIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGFL---TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------ccccc---ccCCHHHHHHHHHHHHcC
Confidence 358999999999999998753 6788887541 12322 234677788888887754
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.53 E-value=3.6 Score=31.25 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=50.8
Q ss_pred ccCCCcEEEecCCC-h-hhhcCCCCccE--EEeCCC--hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCC
Q psy10599 16 KTTAAVYSIFDSFV-H-FSSSAHPKCRL--FITHGG--VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD 89 (112)
Q Consensus 16 ~~~~~~~~~~~~~~-~-~~~l~~~~~~~--~I~hgG--~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~ 89 (112)
.+.++.+..-++.+ . .+++ ..||+ -|+||. ..++.||+.+|+|++..=...+.. ..... |.....+
T Consensus 325 ~~y~nvvly~~~~~~~l~~ly--~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~---g~l~~~~ 396 (438)
T TIGR02919 325 DKYDNVKLYPNITTQKIQELY--QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS---ENIFEHN 396 (438)
T ss_pred HhcCCcEEECCcChHHHHHHH--HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC---CceecCC
Confidence 34443344445566 3 3566 45555 566766 588999999999999874332211 11111 3344432
Q ss_pred CCCHHHHHHHHHHHhcCcc
Q psy10599 90 VFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 90 ~~~~~~l~~~l~~~l~~~~ 108 (112)
+.+++.++|.++|.+++
T Consensus 397 --~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 397 --EVDQLISKLKDLLNDPN 413 (438)
T ss_pred --CHHHHHHHHHHHhcCHH
Confidence 57889999999888763
No 157
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=85.02 E-value=0.39 Score=31.65 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCCCccEEEeCCChhHHHHHHHhCCCeEeecCcc
Q psy10599 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFA 68 (112)
Q Consensus 35 ~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~ 68 (112)
.+..+|++|++||......... ++|++-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4578999999999877777666 99999998743
No 158
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=84.19 E-value=4.1 Score=31.61 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeec
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP 65 (112)
..+|++|+=||=||++.++.. ++|++.+.
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN 293 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFS 293 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 468999999999999999764 56777663
No 159
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.75 E-value=4.1 Score=31.94 Aligned_cols=53 Identities=15% Similarity=0.353 Sum_probs=36.8
Q ss_pred CccEEEeCCChhHHHHHHHh----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcC
Q psy10599 38 KCRLFITHGGVHSAFESIYH----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
.+|++|+-||=||++.++.. ++|++.+-.-. +|... +.+++++.++|.+++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL~---~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGFLT---EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcCc---ccCHHHHHHHHHHHHcC
Confidence 57999999999999999764 77888874311 22222 34566777777777654
No 160
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=83.06 E-value=4 Score=26.00 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCccEEEeCCC-----hhHHHHH---HHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHh
Q psy10599 37 PKCRLFITHGG-----VHSAFES---IYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVL 104 (112)
Q Consensus 37 ~~~~~~I~hgG-----~~t~~ea---~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l 104 (112)
.+||++|-+=| ||+.++| +..|+|.|++--...+..- +.+. ..+...- -++++..+.|+-++
T Consensus 71 ~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpL-KEvd--a~A~a~~---et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 71 EKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPL-KEVD--AAALAVA---ETPEQVVEILRYVL 140 (141)
T ss_pred hhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH-HHHh--HhhHhhh---CCHHHHHHHHHHHh
Confidence 68999999988 7777765 6789999998322111110 1111 1111111 16777777777665
No 161
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=83.06 E-value=11 Score=28.90 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=54.7
Q ss_pred CCCCccEEEeCCCh--------------hHHHHHHHhCCCeEee-----cCccchHHHHHHHH-HcCceee-ecCCCCCH
Q psy10599 35 AHPKCRLFITHGGV--------------HSAFESIYHAVPMVIV-----PLFADQKQNGQKAE-EEGYGLM-VDFDVFDY 93 (112)
Q Consensus 35 ~~~~~~~~I~hgG~--------------~t~~ea~~~g~P~i~v-----P~~~dq~~na~~~~-~~g~g~~-l~~~~~~~ 93 (112)
-|+...++||--|. -++.|.-..|+|++++ |...+-..-+..++ ++++.+. ++-.+++.
T Consensus 143 dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~ 222 (492)
T PF09547_consen 143 DHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLRE 222 (492)
T ss_pred cCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCH
Confidence 47888999999884 3567778899999997 44556566666665 5777655 45567889
Q ss_pred HHHHHHHHHHhcCc
Q psy10599 94 EELRRKVHQVLYEP 107 (112)
Q Consensus 94 ~~l~~~l~~~l~~~ 107 (112)
+++...++++|..-
T Consensus 223 ~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 223 EDITRILEEVLYEF 236 (492)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998653
No 162
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=82.82 E-value=11 Score=27.59 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=51.7
Q ss_pred CcEE-EecCCChh---hhcCCCCccEEEeC----CChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 20 AVYS-IFDSFVHF---SSSAHPKCRLFITH----GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 20 ~~~~-~~~~~~~~---~~l~~~~~~~~I~h----gG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
+++. +.+++|.. .+| +.||+.|-. =|.||++-.+..|+|+.+-... +.+ ..+.+.|+-+..+.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL--~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n---~fw-qdl~e~gv~Vlf~~d~L 279 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALL--RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDN---PFW-QDLTEQGLPVLFTGDDL 279 (322)
T ss_pred ccEEehhhhCCHHHHHHHH--HhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCC---chH-HHHHhCCCeEEecCCcc
Confidence 4553 44677754 577 678886653 3789999999999999986321 111 22566777776666777
Q ss_pred CHHHHHHHHHHH
Q psy10599 92 DYEELRRKVHQV 103 (112)
Q Consensus 92 ~~~~l~~~l~~~ 103 (112)
+...+.++=+++
T Consensus 280 ~~~~v~e~~rql 291 (322)
T PRK02797 280 DEDIVREAQRQL 291 (322)
T ss_pred cHHHHHHHHHHH
Confidence 777777664444
No 163
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=81.76 E-value=0.75 Score=33.47 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=47.2
Q ss_pred CCcEEEec-CCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHH----HHHcCceeeecCCCCCH
Q psy10599 19 AAVYSIFD-SFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQK----AEEEGYGLMVDFDVFDY 93 (112)
Q Consensus 19 ~~~~~~~~-~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~----~~~~g~g~~l~~~~~~~ 93 (112)
..++.... ..+-.++| ..+|++||=-. +.+.|.+..++|+|......|+....+- .+....|..+. +.
T Consensus 251 ~~~i~~~~~~~~~~~ll--~~aDiLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~ 323 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLL--AAADILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY----NF 323 (369)
T ss_dssp TTTEEE-TT-S-HHHHH--HT-SEEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES----SH
T ss_pred CCcEEECCCCCCHHHHH--HhcCEEEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC----CH
Confidence 44555543 34567788 68999999885 5788999999999988655544321100 11223343433 67
Q ss_pred HHHHHHHHHHhcCc
Q psy10599 94 EELRRKVHQVLYEP 107 (112)
Q Consensus 94 ~~l~~~l~~~l~~~ 107 (112)
++|.++|.++++++
T Consensus 324 ~eL~~~i~~~~~~~ 337 (369)
T PF04464_consen 324 EELIEAIENIIENP 337 (369)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred HHHHHHHHhhhhCC
Confidence 88888888877544
No 164
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=80.57 E-value=2.5 Score=29.64 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~ 66 (112)
..+|++|+-||=||++.++.. ++|++.+-.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 457999999999999988754 689888753
No 165
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=80.11 E-value=2 Score=32.10 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCeEeecCc-cchHHHHHHHHHcCc--------eeee----cCCCCCHHHHHHHHHHH
Q psy10599 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLF-ADQKQNGQKAEEEGY--------GLMV----DFDVFDYEELRRKVHQV 103 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~-~dq~~na~~~~~~g~--------g~~l----~~~~~~~~~l~~~l~~~ 103 (112)
..||+.+..+|.. ++|++..|+|+++.=.. .=-..-+.++.+... +..+ -.++++++.|.+++..+
T Consensus 263 ~~aD~al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~l 341 (381)
T COG0763 263 AAADAALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEEL 341 (381)
T ss_pred HHhhHHHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHH
Confidence 5789999988865 45999999999997321 112233444443321 1111 12467899999999999
Q ss_pred hcCc
Q psy10599 104 LYEP 107 (112)
Q Consensus 104 l~~~ 107 (112)
+.|+
T Consensus 342 l~~~ 345 (381)
T COG0763 342 LLNG 345 (381)
T ss_pred hcCh
Confidence 9876
No 166
>KOG4180|consensus
Probab=79.36 E-value=1.2 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=24.5
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCeEee
Q psy10599 37 PKCRLFITHGGVHSAFESIY----HAVPMVIV 64 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~----~g~P~i~v 64 (112)
+++|++|+-||-||++-|.. -.+|+|.+
T Consensus 104 ~waD~VisvGGDGTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 104 RWADMVISVGGDGTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred chhhEEEEecCccceeehhhhhhccCCceeee
Confidence 79999999999999987655 47999988
No 167
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=79.05 E-value=15 Score=27.60 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=48.0
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCce-eeecCCCCCHHHHHHHHHHHhcC
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYG-LMVDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g-~~l~~~~~~~~~l~~~l~~~l~~ 106 (112)
+.++ ..++++|.-==++.+ -|+..|+|.|.+-+ |+.....+++.|.- ..+....++.+.+...+.+.+.+
T Consensus 280 ~~~l--~~~dl~Vg~R~HsaI-~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 280 GGIL--AACDLIVGMRLHSAI-MALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTK 350 (385)
T ss_pred HHHh--ccCceEEeehhHHHH-HHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhc
Confidence 4466 678988864434444 58999999999954 45555777777764 34455567788888887776643
No 168
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=78.42 E-value=5.8 Score=32.47 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=47.0
Q ss_pred cCCChh---hhcCCCCccEEEeCC---Ch-hHHHHHHHhCCC---eEeecCccchHHHHHHHHHcCceeeecCCCCCHHH
Q psy10599 26 DSFVHF---SSSAHPKCRLFITHG---GV-HSAFESIYHAVP---MVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95 (112)
Q Consensus 26 ~~~~~~---~~l~~~~~~~~I~hg---G~-~t~~ea~~~g~P---~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~ 95 (112)
.+++.. .++ ..+|+++.-. |. .++.|++++|+| +++++-+.-- +..+ ...|+.+++ .+.++
T Consensus 362 ~~v~~~el~aly--~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~---~~~l--~~~allVnP--~D~~~ 432 (797)
T PLN03063 362 CSVDFNYLCALY--AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA---GQSL--GAGALLVNP--WNITE 432 (797)
T ss_pred CCCCHHHHHHHH--HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc---hhhh--cCCeEEECC--CCHHH
Confidence 345543 345 6899999764 65 566799999999 5555533211 1111 125777775 37889
Q ss_pred HHHHHHHHhcC
Q psy10599 96 LRRKVHQVLYE 106 (112)
Q Consensus 96 l~~~l~~~l~~ 106 (112)
++++|.++|+.
T Consensus 433 lA~AI~~aL~m 443 (797)
T PLN03063 433 VSSAIKEALNM 443 (797)
T ss_pred HHHHHHHHHhC
Confidence 99999999873
No 169
>PLN02727 NAD kinase
Probab=77.80 E-value=9.4 Score=31.95 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~ 66 (112)
..+|++|+=||=||++.++.. ++|++.+-.
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINl 775 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNL 775 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 468999999999999999764 678887743
No 170
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=77.59 E-value=4.8 Score=31.58 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=53.8
Q ss_pred CCCcEEEecCCChh---hhcCCCCccEEEeCCC---hhHHHHHHHhCCCeEee----cCc----------------cchH
Q psy10599 18 TAAVYSIFDSFVHF---SSSAHPKCRLFITHGG---VHSAFESIYHAVPMVIV----PLF----------------ADQK 71 (112)
Q Consensus 18 ~~~~~~~~~~~~~~---~~l~~~~~~~~I~hgG---~~t~~ea~~~g~P~i~v----P~~----------------~dq~ 71 (112)
+|.-|.-.+.+++. .+| .++.++|--|. .-+-+||+++|+|+|-- |.. ..|.
T Consensus 320 ~P~~V~NHG~l~~~ef~~lL--~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQh 397 (559)
T PF15024_consen 320 VPSFVKNHGILSGDEFQQLL--RKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQH 397 (559)
T ss_pred cchhhhhcCcCCHHHHHHHH--HhhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCC
Confidence 44444445556654 467 67899998887 46788999999988753 211 0133
Q ss_pred HHHHHHH-HcCceeeecCCCCCHHHHHHHHHHHhcCc
Q psy10599 72 QNGQKAE-EEGYGLMVDFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 72 ~na~~~~-~~g~g~~l~~~~~~~~~l~~~l~~~l~~~ 107 (112)
. +++ ..|---+...+--+.+++.+||+++|.++
T Consensus 398 P---Y~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 398 P---YAEEFIGEPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred h---HHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 2 233 23433333333347889999999999765
No 171
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.90 E-value=4.2 Score=29.32 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~ 66 (112)
..+|++|+-||=||+++++.. ++|++.+..
T Consensus 56 ~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 358999999999999999854 789888864
No 172
>KOG0853|consensus
Probab=74.91 E-value=1.1 Score=34.50 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=41.3
Q ss_pred CCccE-EEeCCC---hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCcccc
Q psy10599 37 PKCRL-FITHGG---VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKYV 110 (112)
Q Consensus 37 ~~~~~-~I~hgG---~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~~~ 110 (112)
+.+.. +++..+ .-+..||+++|+|++..-..+- ++-++..-.|..++++.-....+.+++.++..|++++
T Consensus 364 adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP----~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~ 437 (495)
T KOG0853|consen 364 ADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGP----AEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELW 437 (495)
T ss_pred HhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCc----eEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHH
Confidence 34444 444444 3567799999999999843210 0112222346666553223336888888888877664
No 173
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=72.75 E-value=8.6 Score=24.59 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCccEEEeCCC-----hhHHHHH---HHhCCCeEee
Q psy10599 37 PKCRLFITHGG-----VHSAFES---IYHAVPMVIV 64 (112)
Q Consensus 37 ~~~~~~I~hgG-----~~t~~ea---~~~g~P~i~v 64 (112)
..||++|-+=| +|+..+| +..|+|.|++
T Consensus 74 ~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 74 EKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred hhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 68999999988 6777765 6789999998
No 174
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=71.82 E-value=9.2 Score=24.87 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=25.7
Q ss_pred CChhhhcCCCCccEEEe-CCChhHHHH---HHHhCCCeEeecCc
Q psy10599 28 FVHFSSSAHPKCRLFIT-HGGVHSAFE---SIYHAVPMVIVPLF 67 (112)
Q Consensus 28 ~~~~~~l~~~~~~~~I~-hgG~~t~~e---a~~~g~P~i~vP~~ 67 (112)
.+...++. ..+|++|. .||.||+-| ++.+++|+++++..
T Consensus 82 ~~Rk~~m~-~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 82 FARNFILV-RSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred chHHHHHH-HHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 44555554 45666554 566777765 57889999999753
No 175
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=71.79 E-value=15 Score=23.05 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=30.4
Q ss_pred EecCCC-hhhhcCCCCccE-EEeCCChhHHHHHHHh---------CC-CeEeec---CccchHHHHHHHHHcC
Q psy10599 24 IFDSFV-HFSSSAHPKCRL-FITHGGVHSAFESIYH---------AV-PMVIVP---LFADQKQNGQKAEEEG 81 (112)
Q Consensus 24 ~~~~~~-~~~~l~~~~~~~-~I~hgG~~t~~ea~~~---------g~-P~i~vP---~~~dq~~na~~~~~~g 81 (112)
....+. ....|. ..+|+ ++..||.||+-|.... .+ |++++- ++.+-....+.+.+.|
T Consensus 39 ~~~~~~~Rk~~m~-~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g 110 (133)
T PF03641_consen 39 IVDDMFERKEIMI-ESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEG 110 (133)
T ss_dssp EESSHHHHHHHHH-HHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTT
T ss_pred EeCChHHHHHHHH-HhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCC
Confidence 334443 344443 45565 5567778999987532 34 999884 2333333333445544
No 176
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=71.31 E-value=9.7 Score=25.30 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=33.7
Q ss_pred EEEecCCC-hhhhcCCCCccEEEe-CCChhHHHHHHH---------hCCCeEeec---CccchHHHHHHHHHcC
Q psy10599 22 YSIFDSFV-HFSSSAHPKCRLFIT-HGGVHSAFESIY---------HAVPMVIVP---LFADQKQNGQKAEEEG 81 (112)
Q Consensus 22 ~~~~~~~~-~~~~l~~~~~~~~I~-hgG~~t~~ea~~---------~g~P~i~vP---~~~dq~~na~~~~~~g 81 (112)
..+.+.+. ...++. ..+|+||. .||.||+-|.+. +.+|++++- ++.+-....+.+.+.|
T Consensus 80 ~i~~~~~~~Rk~~m~-~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~g 152 (178)
T TIGR00730 80 LIEVNGMHERKAMMA-ELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEG 152 (178)
T ss_pred eEEECCHHHHHHHHH-HhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCC
Confidence 33444444 334444 56777665 466899988743 489999973 2333333334555555
No 177
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=71.17 E-value=5.8 Score=31.03 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=26.1
Q ss_pred CCCccEEEeCCChhHHHHHHHhCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~ 67 (112)
+..+|++|++||....... ...+|+|-++..
T Consensus 62 ~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 92 (538)
T PRK15424 62 TERCDAIIAAGSNGAYLKS-RLSVPVILIKPS 92 (538)
T ss_pred hCCCcEEEECchHHHHHHh-hCCCCEEEecCC
Confidence 4579999999998888876 568999999875
No 178
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=69.99 E-value=6.3 Score=28.80 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=27.3
Q ss_pred hcCCCCccEEEeCCChhH---HHHHHHhCCCeEeec
Q psy10599 33 SSAHPKCRLFITHGGVHS---AFESIYHAVPMVIVP 65 (112)
Q Consensus 33 ~l~~~~~~~~I~hgG~~t---~~ea~~~g~P~i~vP 65 (112)
++...+-|++|++||+-+ +..+...|+|+++.-
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 345567899999999986 788899999998863
No 179
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=69.72 E-value=13 Score=26.44 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=41.0
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEee--cCccchHHHHHHHHHcCceeee-cCCCCCHHHHHHHHHHHh
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV--PLFADQKQNGQKAEEEGYGLMV-DFDVFDYEELRRKVHQVL 104 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v--P~~~dq~~na~~~~~~g~g~~l-~~~~~~~~~l~~~l~~~l 104 (112)
..++ ..|+++|+.-. |..+=|.+.|+|+|.+ |....+ .+-+ ......+.- ..+..+++++.++++++|
T Consensus 249 ~ali--~~a~l~I~~DS-gp~HlAaa~g~P~i~lfg~t~p~~--~~P~-~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 249 AALL--AGADAVVGVDT-GLTHLAAALDKPTVTLYGATDPGR--TGGY-GKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHH--HcCCEEEeCCC-hHHHHHHHcCCCEEEEECCCCHhh--cccC-CCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 3456 68999999875 5566688899999987 332111 1000 000000110 245689999999998764
No 180
>KOG4626|consensus
Probab=69.67 E-value=3 Score=33.52 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=31.4
Q ss_pred cEEEeCCChhHHHHHHHhCCCeEeecCccchH-HHHHHHHHcCceeeec
Q psy10599 40 RLFITHGGVHSAFESIYHAVPMVIVPLFADQK-QNGQKAEEEGYGLMVD 87 (112)
Q Consensus 40 ~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~-~na~~~~~~g~g~~l~ 87 (112)
|-..+. |..|-++.++.|+|++..|.-..-. .-+..+...|+|-.+-
T Consensus 841 DTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 841 DTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred cCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 445554 5678889999999999999743322 2334456677776553
No 181
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=68.24 E-value=30 Score=27.07 Aligned_cols=31 Identities=13% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCCccEEEeCCChhHHHHHHHhCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~ 67 (112)
+..+|++|++||....... ...+|+|-++..
T Consensus 52 ~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 82 (526)
T TIGR02329 52 AERCDVVVAGGSNGAYLKS-RLSLPVIVIKPT 82 (526)
T ss_pred hCCCcEEEECchHHHHHHH-hCCCCEEEecCC
Confidence 4578999999998887776 457999999875
No 182
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.79 E-value=8.7 Score=27.21 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=24.9
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIY----HAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~----~g~P~i~vP~ 66 (112)
..+|++|+=||=||++.++. .++|++.+-.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 56899999999999998875 4679888753
No 183
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=67.61 E-value=9.7 Score=25.55 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=27.3
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~ 66 (112)
..++ .+++++|+.==++.+. |+.+|+|.|.+..
T Consensus 252 ~~~~--~~~~~~Is~RlH~~I~-a~~~g~P~i~i~y 284 (286)
T PF04230_consen 252 LELI--SQADLVISMRLHGAIL-ALSLGVPVIAISY 284 (286)
T ss_pred HHHH--hcCCEEEecCCHHHHH-HHHcCCCEEEEec
Confidence 3456 6899999988888776 8899999999864
No 184
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=66.72 E-value=8.3 Score=27.36 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~ 66 (112)
..+|++|+-||=||++.+... ++|++.++.
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred cCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 789999999999999998753 678988874
No 185
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=65.40 E-value=9.1 Score=27.33 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=27.8
Q ss_pred hcCCCCccEEEeCCChhHHHHHHHhCCCeEeec
Q psy10599 33 SSAHPKCRLFITHGGVHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 33 ~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP 65 (112)
++...+.|++|+.++..+..-|-..|+|.+.+-
T Consensus 88 ~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 88 IIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 344457799999999999999999999999763
No 186
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=64.90 E-value=19 Score=23.94 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=34.7
Q ss_pred CccE-EEeCCChhHHH----------------HHHHhCCCeEeecCc----cchHHHHHHHHHcCceeee
Q psy10599 38 KCRL-FITHGGVHSAF----------------ESIYHAVPMVIVPLF----ADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 38 ~~~~-~I~hgG~~t~~----------------ea~~~g~P~i~vP~~----~dq~~na~~~~~~g~g~~l 86 (112)
++|+ +|..+-+||+. .++..++|++++|.. .-+..|...+.+.|+-+.-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~ 144 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILP 144 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEEC
Confidence 4554 56666666654 356789999999963 3457788899999887653
No 187
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=64.67 E-value=8 Score=23.85 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=23.2
Q ss_pred CccEEEeCCChhHHHHHHHh----C-----CCeEeecCc
Q psy10599 38 KCRLFITHGGVHSAFESIYH----A-----VPMVIVPLF 67 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~----g-----~P~i~vP~~ 67 (112)
..|.+|.-||-||+.|.+.. . .|+-++|.-
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 45799999999999998642 3 577788873
No 188
>PRK13057 putative lipid kinase; Reviewed
Probab=63.58 E-value=10 Score=26.74 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCccEEEeCCChhHHHHHH----HhCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESI----YHAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~----~~g~P~i~vP~ 66 (112)
...|.+|.-||=||+.|++ ..+.|+-++|.
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 4678999999999999886 34678888896
No 189
>PRK06270 homoserine dehydrogenase; Provisional
Probab=62.55 E-value=49 Score=24.20 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=36.1
Q ss_pred ChhhhcCCCCccEEEe------CCC---hhHHHHHHHhCCCeEee---cCccchHHHHHHHHHcCceeee
Q psy10599 29 VHFSSSAHPKCRLFIT------HGG---VHSAFESIYHAVPMVIV---PLFADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 29 ~~~~~l~~~~~~~~I~------hgG---~~t~~ea~~~g~P~i~v---P~~~dq~~na~~~~~~g~g~~l 86 (112)
+..+++..+..|++|- |++ ..-+.+++..|++++.. |...+-..-.+..++.|..+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 4456665567888776 333 44567899999999994 6543333334444556665543
No 190
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=62.29 E-value=5.2 Score=31.59 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCcEEEecCCChhh-hcCCCCccEEEe---CCChhHHHHHHHhCCCeEeecCccchHH
Q psy10599 19 AAVYSIFDSFVHFS-SSAHPKCRLFIT---HGGVHSAFESIYHAVPMVIVPLFADQKQ 72 (112)
Q Consensus 19 ~~~~~~~~~~~~~~-~l~~~~~~~~I~---hgG~~t~~ea~~~g~P~i~vP~~~dq~~ 72 (112)
+.++++.+-.|..+ .-.+.-+|+|.- -||++|..|++.+|+|++..+ ++|+.
T Consensus 488 ~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 488 SERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred hhheeecCCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 45676666655432 123367899875 699999999999999999875 56654
No 191
>PRK11914 diacylglycerol kinase; Reviewed
Probab=62.22 E-value=11 Score=26.95 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=24.9
Q ss_pred CCccEEEeCCChhHHHHHH----HhCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESI----YHAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~----~~g~P~i~vP~ 66 (112)
...|++|.-||=||+.|++ ..++|+-++|.
T Consensus 63 ~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 63 KGTDALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred cCCCEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 4579999999999999887 34688888896
No 192
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=62.11 E-value=49 Score=25.73 Aligned_cols=89 Identities=8% Similarity=0.069 Sum_probs=57.8
Q ss_pred hhhhhccCCCcEEEecCCCh-hhhcCCCCccEEEe-----CCChhHHHHHHHhCCCeEeecCcc--c----hHHHHHHHH
Q psy10599 11 FWADCKTTAAVYSIFDSFVH-FSSSAHPKCRLFIT-----HGGVHSAFESIYHAVPMVIVPLFA--D----QKQNGQKAE 78 (112)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~I~-----hgG~~t~~ea~~~g~P~i~vP~~~--d----q~~na~~~~ 78 (112)
+....+..+.++.+.-+++. ...+.++.+|+++. .||. |-++++++|++-|+-|.-+ | -..+. ..
T Consensus 340 ~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~ 416 (487)
T COG0297 340 LRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQ 416 (487)
T ss_pred HHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--cc
Confidence 33334466777777777653 33334478999876 3665 4558999999777777632 2 22222 35
Q ss_pred HcCceeeecCCCCCHHHHHHHHHHHh
Q psy10599 79 EEGYGLMVDFDVFDYEELRRKVHQVL 104 (112)
Q Consensus 79 ~~g~g~~l~~~~~~~~~l~~~l~~~l 104 (112)
..|.|..... .+++++..++++.+
T Consensus 417 ~~gtGf~f~~--~~~~~l~~al~rA~ 440 (487)
T COG0297 417 GVGTGFLFLQ--TNPDHLANALRRAL 440 (487)
T ss_pred CceeEEEEec--CCHHHHHHHHHHHH
Confidence 5677877764 38999999988765
No 193
>PRK13059 putative lipid kinase; Reviewed
Probab=61.62 E-value=10 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCccEEEeCCChhHHHHHH---H---hCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESI---Y---HAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~---~---~g~P~i~vP~ 66 (112)
...|++|.-||=||+.|.+ . .++|+-++|.
T Consensus 55 ~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 55 ESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 4679999999999998875 2 2478888896
No 194
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=61.54 E-value=34 Score=25.09 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=41.4
Q ss_pred hhhhhhhccCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC
Q psy10599 9 RHFWADCKTTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~ 66 (112)
+++....+..| +..++-|++...-.. +.+|+++|.+-+--+.|.+.-+.++|.+|.
T Consensus 112 ~~~~~~~~~~P-~~~vV~YvNtsA~vK-A~~Di~cTSsNAvkvVe~~~~~~~Iif~PD 167 (324)
T COG0379 112 EEVRAFKEKHP-DAPVVTYVNTSAEVK-AEADICCTSSNAVKVVESALDGDKILFLPD 167 (324)
T ss_pred HHHHHHHHHCC-CCceEEEeeChHHHH-hhcCeEEecchHHHHHHhccCCCcEEEcCc
Confidence 33444444556 667888998766555 678999999999888888866788888884
No 195
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=59.49 E-value=74 Score=23.99 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCccE-EEeCCChhHHHHH-------------HHhCCCeEeecCc-------cchHHHHHHHHHcCceeeecC-------
Q psy10599 37 PKCRL-FITHGGVHSAFES-------------IYHAVPMVIVPLF-------ADQKQNGQKAEEEGYGLMVDF------- 88 (112)
Q Consensus 37 ~~~~~-~I~hgG~~t~~ea-------------~~~g~P~i~vP~~-------~dq~~na~~~~~~g~g~~l~~------- 88 (112)
.++|+ +|..+-+||+.-. +..++|++++|-. .-...|...+.+.|+-++-..
T Consensus 81 ~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~ 160 (399)
T PRK05579 81 KWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACG 160 (399)
T ss_pred cccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCC
Confidence 45676 5666777776532 3458999999942 224678888888887655221
Q ss_pred -----CCCCHHHHHHHHHHHhc
Q psy10599 89 -----DVFDYEELRRKVHQVLY 105 (112)
Q Consensus 89 -----~~~~~~~l~~~l~~~l~ 105 (112)
.-.+++++...+.+.+.
T Consensus 161 ~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 161 DVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CcCCCCCCCHHHHHHHHHHHhh
Confidence 12457888888877764
No 196
>PRK05920 aromatic acid decarboxylase; Validated
Probab=58.25 E-value=25 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHHHhCCCeEeecCc-cc---hHHHHHHHHHcCceee
Q psy10599 53 ESIYHAVPMVIVPLF-AD---QKQNGQKAEEEGYGLM 85 (112)
Q Consensus 53 ea~~~g~P~i~vP~~-~d---q~~na~~~~~~g~g~~ 85 (112)
.++..++|++++|.. .. ...|...+.+.|+-+.
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii 161 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIIL 161 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEe
Confidence 456789999999973 22 3578888888888764
No 197
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=58.10 E-value=8.3 Score=26.40 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=17.9
Q ss_pred CccEEEeCCChhHHHHHHHhCCC
Q psy10599 38 KCRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~g~P 60 (112)
..-++|+|||...++-+...|.|
T Consensus 175 ~~vlvVsHg~vir~ll~~~~~~~ 197 (228)
T PRK14116 175 KNVIIAAHGNSLRALTKYIENIS 197 (228)
T ss_pred CeEEEEcChHHHHHHHHHHhCCC
Confidence 34579999998888777777766
No 198
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=57.41 E-value=19 Score=26.11 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=27.0
Q ss_pred cCCCCccEEEeCCChhHHHHHHH----hCCCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY----HAVPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~----~g~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-+.. .++|+|.+|..
T Consensus 87 l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkT 124 (301)
T TIGR02482 87 LKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGT 124 (301)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccc
Confidence 43458999999999998866642 69999999974
No 199
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=56.91 E-value=12 Score=30.17 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=47.0
Q ss_pred EEEecCCChhh---hcCCCCccEEEeCC---C-hhHHHHHHHhCCC---eEeecCc-cchHHHHHHHHHcCceeeecCCC
Q psy10599 22 YSIFDSFVHFS---SSAHPKCRLFITHG---G-VHSAFESIYHAVP---MVIVPLF-ADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 22 ~~~~~~~~~~~---~l~~~~~~~~I~hg---G-~~t~~ea~~~g~P---~i~vP~~-~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
+.+.+++++.+ ++ ..+|+++... | ..++.|++++|+| .+++..+ +.-. +...|+.+++.
T Consensus 344 ~~~~~~~~~~~l~~ly--~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~-------~l~~~llv~P~- 413 (726)
T PRK14501 344 HYFYRSLPFEELVALY--RAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA-------ELAEALLVNPN- 413 (726)
T ss_pred EEEeCCCCHHHHHHHH--HhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH-------HhCcCeEECCC-
Confidence 34557788654 44 6899988753 4 3567799999775 3333222 2111 11236677653
Q ss_pred CCHHHHHHHHHHHhcCc
Q psy10599 91 FDYEELRRKVHQVLYEP 107 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~ 107 (112)
+.+++.++|.+++..+
T Consensus 414 -d~~~la~ai~~~l~~~ 429 (726)
T PRK14501 414 -DIEGIAAAIKRALEMP 429 (726)
T ss_pred -CHHHHHHHHHHHHcCC
Confidence 6888999999988754
No 200
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=56.82 E-value=22 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCccEEEeCCCh------hHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGGV------HSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~------~t~~ea~~~g~P~i~vP 65 (112)
.+..++++++|- +.+.+|...+.|+|++.
T Consensus 59 g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 59 GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 356778888873 45669999999999994
No 201
>PRK13054 lipid kinase; Reviewed
Probab=55.92 E-value=17 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCccEEEeCCChhHHHHHHHh------C--CCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH------A--VPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~------g--~P~i~vP~ 66 (112)
...|++|.-||=||+.|++.. + .|+-++|.
T Consensus 55 ~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 55 LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 467999999999999998744 2 47788896
No 202
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=55.65 E-value=54 Score=23.34 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=35.0
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhc
Q psy10599 37 PKCRLFITHGGVHSAFESIYH----AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~----g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
..+|+++.=||-||++.+... ++|++.+-.. .+|...+ +..+++.+.+.++++
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~G-------------~lGFLt~---~~~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINLG-------------HLGFLTD---FEPDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeCC-------------Ccccccc---cCHHHHHHHHHHHhc
Confidence 578999999999999988754 4577777320 1333332 345666666666665
No 203
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=55.45 E-value=11 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.2
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy10599 39 CRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P 60 (112)
.-++|+|||...++=+...|.|
T Consensus 176 ~vlvVsHg~vir~l~~~~~~~~ 197 (228)
T PRK14119 176 TVLVSAHGNSIRALIKYLEDVS 197 (228)
T ss_pred eEEEEeChHHHHHHHHHHhCCC
Confidence 4579999998887777777766
No 204
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=55.19 E-value=25 Score=22.83 Aligned_cols=29 Identities=10% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..+++++.| .+.+.+|...++|+|++.
T Consensus 62 g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 62 GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 35677888877 356779999999999995
No 205
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=55.00 E-value=15 Score=24.47 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=16.8
Q ss_pred cEEEeCCChhHHHHHHHhCCCe
Q psy10599 40 RLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 40 ~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
-++|+|||....+=+...|.|.
T Consensus 147 vliVsHg~~ir~ll~~~lg~~~ 168 (204)
T TIGR03848 147 WVACSHGDVIKSVLADALGMHL 168 (204)
T ss_pred EEEEeCChHHHHHHHHHhCCCH
Confidence 4799999987776666677665
No 206
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=54.78 E-value=18 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=22.2
Q ss_pred CccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 38 KCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
++|++|.=||. ++.++ ...|+|+|.+|..
T Consensus 80 ~~d~IIaiGGG-sv~D~aK~iA~~~gip~I~VPTT 113 (332)
T cd08549 80 DTEFLLGIGSG-TIIDLVKFVSFKVGKPFISVPTA 113 (332)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCCEEEeCCC
Confidence 78999999983 44443 3459999999975
No 207
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=54.56 E-value=46 Score=22.83 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.4
Q ss_pred hhHHHHHHHhCCCeEeecCccc--hHHHHHHHHHcCceeee
Q psy10599 48 VHSAFESIYHAVPMVIVPLFAD--QKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 48 ~~t~~ea~~~g~P~i~vP~~~d--q~~na~~~~~~g~g~~l 86 (112)
..|...|+..|+|+.++|-..+ +..-...+-+.|+....
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~ 211 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT 211 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC
Confidence 5677788899999999986433 33334455667865443
No 208
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=54.33 E-value=19 Score=25.94 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=21.9
Q ss_pred CCccEEEeCCChhHHHHHH-----Hh--CCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFESI-----YH--AVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~-----~~--g~P~i~vP~~ 67 (112)
.++|++|.=||. ++.++. .. |+|+|.+|..
T Consensus 77 ~~~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 77 AEVDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred cCcCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 578999999984 444332 23 9999999974
No 209
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=54.10 E-value=38 Score=25.41 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=37.4
Q ss_pred cEEEecCCChhh---hcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccch
Q psy10599 21 VYSIFDSFVHFS---SSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 70 (112)
Q Consensus 21 ~~~~~~~~~~~~---~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq 70 (112)
.+.+..|+||.+ +| -.||+-+-+|= -|+.-|...|+|+|--.+.-|.
T Consensus 245 ~l~~lPF~~Q~~yD~LL--w~cD~NfVRGE-DSfVRAqwAgkPFvWhIYpQ~d 294 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLL--WACDFNFVRGE-DSFVRAQWAGKPFVWHIYPQED 294 (374)
T ss_pred EEEECCCCCHHHHHHHH--HhCccceEecc-hHHHHHHHhCCCceEecCcCch
Confidence 567789999753 67 68999888874 6888999999999998665433
No 210
>PRK13463 phosphatase PhoE; Provisional
Probab=53.97 E-value=12 Score=24.98 Aligned_cols=23 Identities=9% Similarity=0.301 Sum_probs=17.9
Q ss_pred ccEEEeCCChhHHHHHHHhCCCe
Q psy10599 39 CRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
.-++|+|||...++-+...|.|.
T Consensus 145 ~vlvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 145 SILIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred EEEEEeChHHHHHHHHHHhCCCH
Confidence 45899999988877777777664
No 211
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=53.35 E-value=1.1e+02 Score=23.91 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=49.0
Q ss_pred hcC-CCCccEEEeCCCh--------------hHHHHHHHhCCCeEeecCc-----cchHHHHHHH-HHcCce-eeecCCC
Q psy10599 33 SSA-HPKCRLFITHGGV--------------HSAFESIYHAVPMVIVPLF-----ADQKQNGQKA-EEEGYG-LMVDFDV 90 (112)
Q Consensus 33 ~l~-~~~~~~~I~hgG~--------------~t~~ea~~~g~P~i~vP~~-----~dq~~na~~~-~~~g~g-~~l~~~~ 90 (112)
++. |....++|+-.|. ..+.|.-..|+|+|++=.. .+....+..+ +++++. +.++-.+
T Consensus 140 VI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 140 VIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH
Confidence 445 7777888885552 3555667889999998432 2323233344 345654 4455567
Q ss_pred CCHHHHHHHHHHHhcCc
Q psy10599 91 FDYEELRRKVHQVLYEP 107 (112)
Q Consensus 91 ~~~~~l~~~l~~~l~~~ 107 (112)
+..+++...++++|..-
T Consensus 220 l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 220 MRESDILSVLEEVLYEF 236 (492)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 88999999999998653
No 212
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=52.94 E-value=21 Score=26.03 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCCccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
..++|++|.=||. ++.++ ...|+|+|.||..
T Consensus 76 ~~~~d~iiavGGG-s~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 76 VQEADMIFAVGGG-KAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred hcCCCEEEEeCCc-HHHHHHHHHHHHcCCCEEEecCc
Confidence 3578999999984 45444 3448999999963
No 213
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=52.87 E-value=17 Score=26.96 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCccEEEeCCChhHHHHHHHh---CCCeEeecC--------ccchHHHHHHHH
Q psy10599 37 PKCRLFITHGGVHSAFESIYH---AVPMVIVPL--------FADQKQNGQKAE 78 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~---g~P~i~vP~--------~~dq~~na~~~~ 78 (112)
..+|+++.-||-||....+.. .+|++.+|. +.-++.-|.++.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~ 151 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAGVKNYSGVFALSPEDAARLL 151 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeeccccceeccccccChHHHHHHH
Confidence 479999999999887766655 899999995 234555555543
No 214
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=51.91 E-value=21 Score=25.19 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCccEEEeCCChhHHHHHHHh-----CCCeEe-ecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH-----AVPMVI-VPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~-----g~P~i~-vP~ 66 (112)
...|++|.-||=||+.|++.. ..|.+. +|.
T Consensus 56 ~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 56 FGVDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred cCCCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 357899999999999997642 344454 786
No 215
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=51.90 E-value=13 Score=25.47 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=16.8
Q ss_pred ccEEEeCCChhHHHHHHHhCCCe
Q psy10599 39 CRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
.-++|+|||...++=+...|.|.
T Consensus 175 ~vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 175 RVLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred eEEEEeCHHHHHHHHHHHhCCCH
Confidence 34799999987776666667654
No 216
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=51.72 E-value=6.6 Score=24.81 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=7.3
Q ss_pred cEEEeCCCh
Q psy10599 40 RLFITHGGV 48 (112)
Q Consensus 40 ~~~I~hgG~ 48 (112)
.=||+|||+
T Consensus 115 krViSHGGY 123 (127)
T PF12496_consen 115 KRVISHGGY 123 (127)
T ss_pred eeeeccCCc
Confidence 448999997
No 217
>PRK13695 putative NTPase; Provisional
Probab=51.54 E-value=63 Score=20.76 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHh
Q psy10599 50 SAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVL 104 (112)
Q Consensus 50 t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l 104 (112)
.+.+++..|.|+|++-....-...+..+..+.=+........+++.+...|.+.+
T Consensus 118 ~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 118 AVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred HHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 3445667788888875543222345555554334444433446677777666543
No 218
>PRK13055 putative lipid kinase; Reviewed
Probab=51.24 E-value=22 Score=25.82 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCccEEEeCCChhHHHHHHHh------CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH------AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~------g~P~i~vP~ 66 (112)
...|++|.-||=||+.|++.. ..|+-++|.
T Consensus 58 ~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 58 AGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred cCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 356899999999999998743 356777896
No 219
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=50.80 E-value=14 Score=23.80 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=17.1
Q ss_pred CccEEEeCCChhHHHHHHHhCCC
Q psy10599 38 KCRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~g~P 60 (112)
..-++|+|||...++-+...|.|
T Consensus 138 ~~vlvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 138 DNVLIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred CeEEEEECHHHHHHHHHHHhCCC
Confidence 34579999998877766666765
No 220
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=50.79 E-value=14 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=16.8
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy10599 39 CRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P 60 (112)
.-++|+|||...++=+...|.|
T Consensus 176 ~vlvVsHg~~ir~ll~~~lg~~ 197 (230)
T PRK14117 176 NVFVGAHGNSIRALVKHIKGLS 197 (230)
T ss_pred EEEEEeChHHHHHHHHHHhCcC
Confidence 3479999998777766677765
No 221
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=50.09 E-value=46 Score=22.87 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=31.1
Q ss_pred EeecC----ccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCc
Q psy10599 62 VIVPL----FADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 62 i~vP~----~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~ 107 (112)
|.+|. +.+.+.+...++++|..++++.. .+.+-+...++...++.
T Consensus 2 IGIPraL~~y~~~p~W~~FF~~LG~~Vv~S~~-T~k~i~~~G~~~~~~e~ 50 (221)
T PF09989_consen 2 IGIPRALNYYEYYPFWQTFFTELGFEVVLSPP-TNKEILDKGVKSAPSEF 50 (221)
T ss_pred eecchhHhhhhhhHHHHHHHHHcCCEEEECCC-CcHHHHHHHhhhCCCCc
Confidence 45564 46788999999999999999853 34555555565554443
No 222
>PRK03202 6-phosphofructokinase; Provisional
Probab=49.86 E-value=30 Score=25.27 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred cCCCCccEEEeCCChhHHHHHHH---hCCCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY---HAVPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~---~g~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-+.. .++|+|.+|..
T Consensus 89 l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkT 125 (320)
T PRK03202 89 LKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGT 125 (320)
T ss_pred HHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccc
Confidence 33357899999999988876644 59999999974
No 223
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=49.49 E-value=28 Score=22.97 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=30.9
Q ss_pred HhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHH
Q psy10599 56 YHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQV 103 (112)
Q Consensus 56 ~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~ 103 (112)
..|+|.-=+=++.|+..|...+.++|+--+.-++.++.+.+.+.|++-
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~~ 166 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEKF 166 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHHH
Confidence 345554444457899999999888999888877789999998888753
No 224
>PF14350 Beta_protein: Beta protein
Probab=48.14 E-value=27 Score=25.42 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=33.1
Q ss_pred EeCCChhH-HHHHH-HhCC---CeEeecCccchHHHHHHHH---HcCceeeecCCCCCHHHHHHHHHHHhc
Q psy10599 43 ITHGGVHS-AFESI-YHAV---PMVIVPLFADQKQNGQKAE---EEGYGLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 43 I~hgG~~t-~~ea~-~~g~---P~i~vP~~~dq~~na~~~~---~~g~g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
....|.-. +.+.+ ..|. |++..-...+.......+. ..|+++++...++..+.+...|.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~iPVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~ 147 (347)
T PF14350_consen 77 DSGNHPLNYWIDFLSRLGNQIIPVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILA 147 (347)
T ss_pred cccchHHHHHHHHHHHcCCeEEEEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHH
Confidence 33344433 43433 3454 5555544444333333333 456777777766665566666666654
No 225
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=48.04 E-value=20 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=18.1
Q ss_pred ccEEEeCCChhHHHHHHHhCCCe
Q psy10599 39 CRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
..++|+|||...++=+...|.|.
T Consensus 234 ~vLVVsHGgvIR~ll~~lLglp~ 256 (299)
T PTZ00122 234 VEIIVCHGNVIRYLVCRALQLPP 256 (299)
T ss_pred eEEEEeCChHHHHHHHHHhCcCH
Confidence 35899999988887777777663
No 226
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=47.97 E-value=16 Score=24.28 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.0
Q ss_pred CccEEEeCCChhHHHHHHHhCCCe
Q psy10599 38 KCRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
..-++|+|||...++-+...|.|.
T Consensus 142 ~~iliVsHg~~i~~l~~~~~~~~~ 165 (199)
T PRK15004 142 QNLLIVSHQGVLSLLIARLLGMPA 165 (199)
T ss_pred CeEEEEcChHHHHHHHHHHhCCCH
Confidence 345799999987777777777664
No 227
>PRK13337 putative lipid kinase; Reviewed
Probab=47.81 E-value=27 Score=24.90 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCccEEEeCCChhHHHHHHH--h----CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIY--H----AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~--~----g~P~i~vP~ 66 (112)
...|++|.-||=||+.|++. . ..|+-++|.
T Consensus 56 ~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 56 RKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 45689999999999999875 2 246777896
No 228
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=47.73 E-value=80 Score=20.88 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCccE-EEeCCChhHHH---------------HHHHhCCCeEeecCc-------cchHHHHHHHHHcCceee
Q psy10599 37 PKCRL-FITHGGVHSAF---------------ESIYHAVPMVIVPLF-------ADQKQNGQKAEEEGYGLM 85 (112)
Q Consensus 37 ~~~~~-~I~hgG~~t~~---------------ea~~~g~P~i~vP~~-------~dq~~na~~~~~~g~g~~ 85 (112)
.++|+ +|..+.++|+. .++..++|++++|.. .--..|...+++.|+-+.
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi 146 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEI 146 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEE
Confidence 34554 56666666554 222237999999942 223568888888887654
No 229
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=47.10 E-value=41 Score=22.92 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=21.4
Q ss_pred hhHHHHHHHhCCCeEeecCc--cchHHHHHHHHHcCceeee
Q psy10599 48 VHSAFESIYHAVPMVIVPLF--ADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 48 ~~t~~ea~~~g~P~i~vP~~--~dq~~na~~~~~~g~g~~l 86 (112)
+.|+..|+..|+|+.++|-. .++..-...+-+.| +..+
T Consensus 171 ~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 171 LHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp HHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE-
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEee
Confidence 57778899999999999864 34455556677777 4433
No 230
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=47.07 E-value=2.8 Score=18.65 Aligned_cols=17 Identities=18% Similarity=0.514 Sum_probs=12.1
Q ss_pred ChhHHHHHHHhCCCeEe
Q psy10599 47 GVHSAFESIYHAVPMVI 63 (112)
Q Consensus 47 G~~t~~ea~~~g~P~i~ 63 (112)
|.|+++-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56788888888877654
No 231
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=46.98 E-value=33 Score=24.42 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=41.7
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEee--cCccch----HHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhc
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV--PLFADQ----KQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v--P~~~dq----~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
.++ ..||++|+.-. |..+=|.+.|+|++.+ |..... ..|...+. ...-+ ..+++++++.++++++|+
T Consensus 249 ali--~~a~l~I~nDS-Gp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~--~~~~c--m~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 249 RVL--AGAKAVVSVDT-GLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR--SPGKS--MADLSAETVFQKLETLIS 321 (322)
T ss_pred HHH--HhCCEEEecCC-cHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec--CCCcc--cccCCHHHHHHHHHHHhh
Confidence 456 68999999876 5666788999999997 432110 01111010 00112 346789999999988874
No 232
>PRK00861 putative lipid kinase; Reviewed
Probab=46.66 E-value=30 Score=24.53 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIY----HAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~----~g~P~i~vP~ 66 (112)
...|++|.-||=||+.|++. .+.|+-++|.
T Consensus 56 ~~~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~ 89 (300)
T PRK00861 56 RGAELIIASGGDGTLSAVAGALIGTDIPLGIIPR 89 (300)
T ss_pred cCCCEEEEECChHHHHHHHHHHhcCCCcEEEEcC
Confidence 45689999999999998863 3567778896
No 233
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=46.52 E-value=34 Score=25.04 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=27.0
Q ss_pred cCCCCccEEEeCCChhHHHHHHH---hCCCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY---HAVPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~---~g~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-|.. .|+|+|.+|..
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkT 126 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKT 126 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccc
Confidence 33458899999999988876643 59999999974
No 234
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=46.20 E-value=91 Score=21.04 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=34.2
Q ss_pred HhCCCeEeecCccchHHHHHHHHHcCc-eeeecCCCCCHHHHHHHHHHHhcCccc
Q psy10599 56 YHAVPMVIVPLFADQKQNGQKAEEEGY-GLMVDFDVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 56 ~~g~P~i~vP~~~dq~~na~~~~~~g~-g~~l~~~~~~~~~l~~~l~~~l~~~~~ 109 (112)
....|+|++....+.......+.+.|+ |...+ +.+.++|.++|+.++....|
T Consensus 66 ~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K--~~~~~eL~~aI~~v~~G~~~ 118 (207)
T PRK11475 66 FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSK--ASTLEILQQELFLSLNGVRQ 118 (207)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEec--CCCHHHHHHHHHHHHCCCcc
Confidence 347788888654444434444546676 44443 45789999999999876554
No 235
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=46.14 E-value=31 Score=25.04 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCccEEEeCCChhHHHHHH-----HhCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFESI-----YHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~-----~~g~P~i~vP~~ 67 (112)
..+|++|.=|| |++.+.. ..++|+|.||..
T Consensus 76 ~~~d~IIaiGG-Gs~iD~aK~ia~~~~~p~i~IPTt 110 (337)
T cd08177 76 AGADGIVAIGG-GSTIDLAKAIALRTGLPIIAIPTT 110 (337)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHhcCCEEEEcCC
Confidence 57899999988 4454442 348999999975
No 236
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=45.76 E-value=31 Score=25.16 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCCccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
..++|++|.=||. ++.++ ...++|+|.||..
T Consensus 75 ~~~~d~IIavGGG-s~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 75 EQEADVIIGVGGG-KTLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred hcCCCEEEEecCc-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 3578999999984 44443 2349999999973
No 237
>PRK03482 phosphoglycerate mutase; Provisional
Probab=45.31 E-value=21 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=17.6
Q ss_pred ccEEEeCCChhHHHHHHHhCCCe
Q psy10599 39 CRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
.-++|+|||...++=+...|.|.
T Consensus 144 ~vliVsHg~~i~~l~~~l~~~~~ 166 (215)
T PRK03482 144 RPLLVSHGIALGCLVSTILGLPA 166 (215)
T ss_pred eEEEEeCcHHHHHHHHHHhCCCh
Confidence 35799999987777777777664
No 238
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=45.31 E-value=31 Score=25.28 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCCccEEEeCCChhHHHHHHH----------------------hCCCeEeecCc
Q psy10599 35 AHPKCRLFITHGGVHSAFESIY----------------------HAVPMVIVPLF 67 (112)
Q Consensus 35 ~~~~~~~~I~hgG~~t~~ea~~----------------------~g~P~i~vP~~ 67 (112)
...++|++|.=||. +++++.. .++|+|.||..
T Consensus 80 ~~~~~D~IIavGGG-SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 80 KKFNADFVIGIGGG-SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HhcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 34588999999994 4555442 26899999974
No 239
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=44.72 E-value=68 Score=21.31 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=18.8
Q ss_pred ccE-EEeCCChhHHH----------------HHHHhCCCeEeecC
Q psy10599 39 CRL-FITHGGVHSAF----------------ESIYHAVPMVIVPL 66 (112)
Q Consensus 39 ~~~-~I~hgG~~t~~----------------ea~~~g~P~i~vP~ 66 (112)
+|+ +|..+-+||+. +++..++|++++|.
T Consensus 79 ~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~ 123 (174)
T TIGR02699 79 YDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPS 123 (174)
T ss_pred cCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEEC
Confidence 444 56666666654 33456899999997
No 240
>PRK01112 phosphoglyceromutase; Provisional
Probab=44.37 E-value=19 Score=24.68 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=17.9
Q ss_pred CccEEEeCCChhHHHHHHHhCCCe
Q psy10599 38 KCRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
..-++|+|||...+.-+...|.|.
T Consensus 174 ~~ilVVsHg~vir~l~~~ll~~~~ 197 (228)
T PRK01112 174 KNVFVSAHGNSLRSLIMDLEKLSE 197 (228)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCH
Confidence 456789999987777777776554
No 241
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=44.21 E-value=38 Score=24.69 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.8
Q ss_pred cCCCCccEEEeCCChhHHHHHHH---hCCCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY---HAVPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~---~g~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-|.. .|+|+|.+|-.
T Consensus 88 l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkT 124 (317)
T cd00763 88 LKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGT 124 (317)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccc
Confidence 34458899999999888876643 49999999963
No 242
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=44.21 E-value=31 Score=23.99 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=24.0
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEee
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
..++ ..+|++|+.-. |+++=|.+.|+|++.+
T Consensus 193 ~~li--~~~~l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 193 AALL--ARADLVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHH--HhCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 3455 67999999865 5566678999999987
No 243
>PRK01295 phosphoglyceromutase; Provisional
Probab=43.40 E-value=20 Score=24.11 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=18.2
Q ss_pred CccEEEeCCChhHHHHHHHhCCCe
Q psy10599 38 KCRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
..-++|+|||..-++-+...|.|.
T Consensus 151 ~~vliVtHg~~ir~l~~~~l~~~~ 174 (206)
T PRK01295 151 ERVLVAAHGNSLRALVMVLDGLTP 174 (206)
T ss_pred CeEEEEcChHHHHHHHHHHhCCCH
Confidence 346899999987777777777664
No 244
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=42.76 E-value=84 Score=19.66 Aligned_cols=28 Identities=14% Similarity=0.416 Sum_probs=21.3
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..++++++| .+.+.++...++|+|++.
T Consensus 59 ~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 59 KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 4567888855 356678888999999995
No 245
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=42.75 E-value=21 Score=24.54 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.6
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy10599 39 CRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P 60 (112)
.-++|+|||...+.=+...|.|
T Consensus 163 ~vliVsHG~vir~ll~~l~~~~ 184 (236)
T PTZ00123 163 KVLVAAHGNSLRALVKYLDKMS 184 (236)
T ss_pred eEEEEeCHHHHHHHHHHHhCCC
Confidence 3479999998777666666666
No 246
>PRK14071 6-phosphofructokinase; Provisional
Probab=41.45 E-value=46 Score=24.73 Aligned_cols=34 Identities=18% Similarity=0.016 Sum_probs=26.0
Q ss_pred cCCCCccEEEeCCChhHHHHHHH----hCCCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY----HAVPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~----~g~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-+.. .|+|+|.+|-.
T Consensus 103 l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkT 140 (360)
T PRK14071 103 YHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKT 140 (360)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccc
Confidence 33358899999999988754432 39999999963
No 247
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.32 E-value=69 Score=21.76 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=30.2
Q ss_pred ChhhhcCCCCccEEEeCCChhH--HHHHH-H-hCCCeEeecCccchHHHHHHHHHc
Q psy10599 29 VHFSSSAHPKCRLFITHGGVHS--AFESI-Y-HAVPMVIVPLFADQKQNGQKAEEE 80 (112)
Q Consensus 29 ~~~~~l~~~~~~~~I~hgG~~t--~~ea~-~-~g~P~i~vP~~~dq~~na~~~~~~ 80 (112)
+...++. .+-|++|...+... ..+.+ . .|+|++.++.........+.+...
T Consensus 66 n~E~i~~-l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~l 120 (262)
T cd01147 66 NYEKIAA-LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLL 120 (262)
T ss_pred CHHHHHh-cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHH
Confidence 3445554 68999998766543 44544 3 789999987542223333444433
No 248
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=41.26 E-value=1.6e+02 Score=24.28 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHhCCCeEeecCc-cc---hHHHHHHHHHc-----CceeeecCCCC--------CHHHHHHHHHHHh
Q psy10599 45 HGGVHSAFESIYHAVPMVIVPLF-AD---QKQNGQKAEEE-----GYGLMVDFDVF--------DYEELRRKVHQVL 104 (112)
Q Consensus 45 hgG~~t~~ea~~~g~P~i~vP~~-~d---q~~na~~~~~~-----g~g~~l~~~~~--------~~~~l~~~l~~~l 104 (112)
|+|+-++.-+++.|.-.+++|-. .+ ...-++.+++. +.++++-.+.. ..+.+.+.|++-+
T Consensus 196 ~~G~LAl~aalA~gad~iliPE~~~~~~~~~~i~~~l~~~~~~gk~~~iIvvaEG~~d~~g~~i~~~~l~~~l~~~~ 272 (745)
T TIGR02478 196 HCGYLALMAAIATGADYVFIPERPPEEGWEDQLCHKLKRNRKAGKRKNIVIVAEGAIDRDLNPITSEDVKDVLVERL 272 (745)
T ss_pred cccHHHHHHHhccCCCEEEecCCCCCchHHHHHHHHHHHHHHcCCCcEEEEEeCCcccccCCcccHHHHHHHHHHhc
Confidence 78999999999999999999853 33 33344444432 45555432222 3455666665543
No 249
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=40.90 E-value=37 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCccEEEeCCChhHHHHHH-------------------------HhCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESI-------------------------YHAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~-------------------------~~g~P~i~vP~~ 67 (112)
..++|++|.=||. +++++. ..++|+|.||..
T Consensus 84 ~~~~D~IiaiGGG-SviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 84 ASGADYLIAIGGG-SPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred hcCCCEEEEeCCh-HHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 3578999999984 455444 135799999974
No 250
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=40.65 E-value=29 Score=24.65 Aligned_cols=33 Identities=6% Similarity=0.128 Sum_probs=24.3
Q ss_pred hhcCCCCccEEEeCCChhH------HHHHHHhCCCeEee
Q psy10599 32 SSSAHPKCRLFITHGGVHS------AFESIYHAVPMVIV 64 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t------~~ea~~~g~P~i~v 64 (112)
.++..-++|++||+-..++ +.-|...|+|+|++
T Consensus 190 all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 190 ALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 3454458999999854433 55677889999999
No 251
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=40.64 E-value=52 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=20.8
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..+++++.| .+.+.+|...++|+|++.
T Consensus 59 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 59 GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 4566667655 355678889999999995
No 252
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=40.27 E-value=24 Score=24.55 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=16.8
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy10599 39 CRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P 60 (112)
.-++|+|||...+.=+...|.|
T Consensus 175 ~vlvVsHg~vir~l~~~l~~l~ 196 (245)
T TIGR01258 175 RVLIVAHGNSLRALVKHLEGIS 196 (245)
T ss_pred EEEEEcChHHHHHHHHHHHCcC
Confidence 4689999998777766666655
No 253
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=39.98 E-value=34 Score=20.95 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred ccEEEeCCChhHHHHHHHh----CC----CeEeecC
Q psy10599 39 CRLFITHGGVHSAFESIYH----AV----PMVIVPL 66 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~----g~----P~i~vP~ 66 (112)
.|.+|.-||=||+.+++.. +. |+-++|.
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecC
Confidence 3899999999999998742 33 7777886
No 254
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.85 E-value=89 Score=20.84 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=31.1
Q ss_pred hHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCcc
Q psy10599 70 QKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 70 q~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~ 108 (112)
+..|+.+.++.|.-.++..+..+.++|.++..+-|+|+.
T Consensus 110 ~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~ 148 (176)
T COG3195 110 TELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDR 148 (176)
T ss_pred HHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccH
Confidence 467899999999888877667788888888888777753
No 255
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.52 E-value=78 Score=20.40 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=24.1
Q ss_pred hhhhcCCCCccEEEeCCChhH--HHHHH-HhCCCeEeecC
Q psy10599 30 HFSSSAHPKCRLFITHGGVHS--AFESI-YHAVPMVIVPL 66 (112)
Q Consensus 30 ~~~~l~~~~~~~~I~hgG~~t--~~ea~-~~g~P~i~vP~ 66 (112)
...++. .+-|++|..++.+. ..+.+ ..|+|++.++.
T Consensus 62 ~E~ll~-l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 62 VELIVA-LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred HHHHhc-cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 344554 68899988665433 44433 68999999975
No 256
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=39.36 E-value=1.6e+02 Score=21.86 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=43.8
Q ss_pred CccEEEeCCChhHHHHHHHh-----------------CCCeEeecCccchHHHHHHHHHcCceeee---cC-CCCCHHHH
Q psy10599 38 KCRLFITHGGVHSAFESIYH-----------------AVPMVIVPLFADQKQNGQKAEEEGYGLMV---DF-DVFDYEEL 96 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~-----------------g~P~i~vP~~~dq~~na~~~~~~g~g~~l---~~-~~~~~~~l 96 (112)
.++.+++.||..+.+-++.. +.|+++++-..+ .-..+.+.-.|++++. +. ...+.++|
T Consensus 103 ~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH-~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 103 DAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH-YSIEKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc-cHHHHhcceeeeEEEEecCCcchhhhHHHh
Confidence 36789999997777655422 356777776554 4455556667887552 22 24678889
Q ss_pred HHHHHHHhcC
Q psy10599 97 RRKVHQVLYE 106 (112)
Q Consensus 97 ~~~l~~~l~~ 106 (112)
.++|.+..++
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9888877654
No 257
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.64 E-value=47 Score=24.58 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCCccEEEeCCChhHHHHHH---H--------------------hCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESI---Y--------------------HAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~---~--------------------~g~P~i~vP~~ 67 (112)
..++|++|.=||. +++++. + .++|+|.||..
T Consensus 84 ~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 84 EEKVDFILAVGGG-SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HcCCCEEEEeCCh-HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 3578999999984 444432 1 26899999973
No 258
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=38.43 E-value=45 Score=23.48 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=31.3
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCc
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGY 82 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~ 82 (112)
.++ .+++++|+.==++++. |+.+|+|.+.+++. ......+++.|.
T Consensus 246 ~~i--~~~~~vI~~RlH~~I~-A~~~gvP~i~i~y~---~K~~~~~~~~g~ 290 (298)
T TIGR03609 246 GLF--ASARLVIGMRLHALIL-AAAAGVPFVALSYD---PKVRAFAADAGV 290 (298)
T ss_pred HHH--hhCCEEEEechHHHHH-HHHcCCCEEEeecc---HHHHHHHHHhCC
Confidence 345 6799999977777675 78889999998542 344455555554
No 259
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=38.37 E-value=1.6e+02 Score=23.00 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=49.7
Q ss_pred EEEecCCChhhhc-CCCCccEEEeC---CChhHHH-HHHHhCC--C-eEeecCccchHHHHHHHHHcCceeeecCCCCCH
Q psy10599 22 YSIFDSFVHFSSS-AHPKCRLFITH---GGVHSAF-ESIYHAV--P-MVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDY 93 (112)
Q Consensus 22 ~~~~~~~~~~~~l-~~~~~~~~I~h---gG~~t~~-ea~~~g~--P-~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~ 93 (112)
+.+.+.+|..++. ....+|+++.- -|+|.+. |.++++. | ++++..+.-. .+...-++.+++ .+.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa------a~~l~~AllVNP--~d~ 435 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA------AVELKGALLTNP--YDP 435 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccc------hhhcCCCEEECC--CCH
Confidence 5666788865532 11678988764 4777655 8888876 2 2333322211 133445777775 478
Q ss_pred HHHHHHHHHHhcCcc
Q psy10599 94 EELRRKVHQVLYEPK 108 (112)
Q Consensus 94 ~~l~~~l~~~l~~~~ 108 (112)
++++++|.+.|+.+.
T Consensus 436 ~~~A~ai~~AL~m~~ 450 (487)
T TIGR02398 436 VRMDETIYVALAMPK 450 (487)
T ss_pred HHHHHHHHHHHcCCH
Confidence 999999999987653
No 260
>PRK13840 sucrose phosphorylase; Provisional
Probab=38.28 E-value=49 Score=25.78 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=30.9
Q ss_pred HhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHH
Q psy10599 56 YHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKV 100 (112)
Q Consensus 56 ~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l 100 (112)
..|+|+|...-.--....-+.+++.|-++.+++..++.+++.+.+
T Consensus 370 ~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l 414 (495)
T PRK13840 370 APGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEAL 414 (495)
T ss_pred CCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHH
Confidence 459999997543333333456667888999988777877766654
No 261
>PRK11761 cysM cysteine synthase B; Provisional
Probab=38.14 E-value=1.5e+02 Score=21.18 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHhCCCeEee-cCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHH
Q psy10599 53 ESIYHAVPMVIV-PLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQV 103 (112)
Q Consensus 53 ea~~~g~P~i~v-P~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~ 103 (112)
-|...|.|.+++ |.... ..+...++..|+-+++-....+.+...+..+++
T Consensus 81 ~a~~~G~~~~i~~p~~~~-~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l 131 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMS-QERRAAMRAYGAELILVPKEQGMEGARDLALQM 131 (296)
T ss_pred HHHHcCCCEEEEECCCCC-HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Confidence 344679999886 77655 357788889999888765322333333333343
No 262
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=38.11 E-value=39 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=26.3
Q ss_pred cCCCCccEEEeCCChhHHHHHHH-------h--CCCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY-------H--AVPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~-------~--g~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-|.. . ++|+|.+|-.
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkT 150 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKT 150 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeee
Confidence 44458999999999888765533 2 8999999963
No 263
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=38.06 E-value=30 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.2
Q ss_pred cCCCCccEEEeCCChhHHHHHHH----hCCCeEeecC
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY----HAVPMVIVPL 66 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~----~g~P~i~vP~ 66 (112)
|.....|.+|.=||-+|...+.. .++|+|.+|.
T Consensus 88 l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPk 124 (282)
T PF00365_consen 88 LKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPK 124 (282)
T ss_dssp HHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEE
T ss_pred HHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEec
Confidence 33358899999999998876643 4699999996
No 264
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=37.72 E-value=48 Score=23.93 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=21.6
Q ss_pred CccEEEeCCChhHHHHHH-----HhCCCeEeecCc
Q psy10599 38 KCRLFITHGGVHSAFESI-----YHAVPMVIVPLF 67 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~-----~~g~P~i~vP~~ 67 (112)
++|++|.=|| |++.+.. ..|+|+|.+|..
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTTN 108 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecCc
Confidence 5899999888 4444443 459999999974
No 265
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=37.56 E-value=51 Score=24.45 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=21.9
Q ss_pred CCCccEEEeCCChhHHHHHH---H--h------------------CCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESI---Y--H------------------AVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~---~--~------------------g~P~i~vP~~ 67 (112)
..++|++|.=||. +++++. + . ++|+|.||..
T Consensus 77 ~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 77 RAGPDVIIGLGGG-SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 3588999999984 444432 1 1 7899999974
No 266
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=37.45 E-value=30 Score=24.09 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=16.0
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy10599 39 CRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P 60 (112)
.-++|||||...+.=+...+.|
T Consensus 175 ~vlvVtHggvir~l~~~ll~~~ 196 (247)
T PRK14115 175 RVLIAAHGNSLRALVKYLDNIS 196 (247)
T ss_pred eEEEEeChHHHHHHHHHHhCCC
Confidence 4579999998766666666655
No 267
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=37.13 E-value=1.8e+02 Score=21.86 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=51.1
Q ss_pred EEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHH----HHcCceeeecCCCCCHHHHHH
Q psy10599 23 SIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKA----EEEGYGLMVDFDVFDYEELRR 98 (112)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~----~~~g~g~~l~~~~~~~~~l~~ 98 (112)
.+.++.+-.+++ +.+|++||-=. +.+.|.+...+|+|..-...+|....+-+ +...-|-++. +..++.+
T Consensus 273 ~vs~~~di~dll--~~sDiLITDyS-Sv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~----~~~~li~ 345 (388)
T COG1887 273 DVSDNADINDLL--LVSDILITDYS-SVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE----TQEELID 345 (388)
T ss_pred ecccchhHHHHH--hhhCEEEeech-HHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc----cHHHHHH
Confidence 444456667788 78999999664 56779999999999986666665222211 1223344443 5667777
Q ss_pred HHHHHhcCc
Q psy10599 99 KVHQVLYEP 107 (112)
Q Consensus 99 ~l~~~l~~~ 107 (112)
+|...+.++
T Consensus 346 ai~~~~~~~ 354 (388)
T COG1887 346 AIKPYDEDG 354 (388)
T ss_pred HHHhhhccc
Confidence 887776643
No 268
>PLN00011 cysteine synthase
Probab=37.05 E-value=1.6e+02 Score=21.27 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=33.6
Q ss_pred ccEEEeCCChhHH----HHHHHhCCCeEee-cCccchHHHHHHHHHcCceeeecCCC
Q psy10599 39 CRLFITHGGVHSA----FESIYHAVPMVIV-PLFADQKQNGQKAEEEGYGLMVDFDV 90 (112)
Q Consensus 39 ~~~~I~hgG~~t~----~ea~~~g~P~i~v-P~~~dq~~na~~~~~~g~g~~l~~~~ 90 (112)
++-+|+..+.|+- +-|...|.|..++ |.... ..+.+.++..|+-+.+....
T Consensus 69 ~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~i~~~GA~V~~~~~~ 124 (323)
T PLN00011 69 KSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMS-LERRIILRALGAEVHLTDQS 124 (323)
T ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC
Confidence 4555554443333 2345679998876 77655 47888899999988875433
No 269
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=36.97 E-value=49 Score=23.94 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCCccEEEeCCChhHHHHHHH------h------CCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESIY------H------AVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~~------~------g~P~i~vP~~ 67 (112)
..++|++|.=||. +++++.- . ++|+|.+|..
T Consensus 76 ~~~~d~IiaiGGG-s~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 76 DFKPDIVIALGGG-SAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred hcCCCEEEEECCc-hHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 3578999998884 4444432 1 4799999974
No 270
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=36.77 E-value=34 Score=22.65 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=16.4
Q ss_pred cEEEeCCChhHHHHHHHhCCCe
Q psy10599 40 RLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 40 ~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
-++|+|||...++=+...|.+.
T Consensus 148 vlvVsHg~~ir~l~~~~~~~~~ 169 (208)
T COG0406 148 VLVVSHGGVIRALLAYLLGLDL 169 (208)
T ss_pred EEEEEChHHHHHHHHHhcCCCh
Confidence 5899999988766666666554
No 271
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=36.48 E-value=21 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=21.3
Q ss_pred ccEEEeCCChhHHH--HHHHhCCCeEeecC
Q psy10599 39 CRLFITHGGVHSAF--ESIYHAVPMVIVPL 66 (112)
Q Consensus 39 ~~~~I~hgG~~t~~--ea~~~g~P~i~vP~ 66 (112)
=|++|.|+|+|-.+ --+...+|+|...-
T Consensus 67 PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 67 PDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 39999999997543 44567999998753
No 272
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=36.47 E-value=52 Score=24.29 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=21.6
Q ss_pred CCccEEEeCCChhHHHHHH---H--------------------hCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFESI---Y--------------------HAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~---~--------------------~g~P~i~vP~~ 67 (112)
.++|++|.=||. +++++. + .++|+|.||..
T Consensus 84 ~~~D~IIavGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 84 EGCDFIISIGGG-SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 478999999984 444432 1 36899999974
No 273
>PRK13462 acid phosphatase; Provisional
Probab=36.20 E-value=39 Score=22.68 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=15.4
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy10599 39 CRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P 60 (112)
.-++|+|||.....=+...|.|
T Consensus 141 ~vliVsHg~vir~ll~~~l~~~ 162 (203)
T PRK13462 141 DVVFVSHGHFSRAVITRWVELP 162 (203)
T ss_pred CEEEEeCCHHHHHHHHHHhCCC
Confidence 4579999987666555556655
No 274
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=36.17 E-value=1.4e+02 Score=23.45 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 62 g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 62 GKVGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 35677888876 456789999999999984
No 275
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=36.08 E-value=30 Score=24.16 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=15.6
Q ss_pred ccEEEeCCChhHHHHHHHhCCCe
Q psy10599 39 CRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
.-++|+|||..-+.=+...|.|.
T Consensus 177 ~iliVsHggvir~l~~~~~~~~~ 199 (249)
T PRK14120 177 TVLIAAHGNSLRALVKHLDGISD 199 (249)
T ss_pred EEEEEeCHHHHHHHHHHHhCCCH
Confidence 34689999976665555556553
No 276
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=35.95 E-value=70 Score=19.54 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=18.5
Q ss_pred CCccEEE--eCCC----hhHHHHHH--HhCCCeEeecCc
Q psy10599 37 PKCRLFI--THGG----VHSAFESI--YHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I--~hgG----~~t~~ea~--~~g~P~i~vP~~ 67 (112)
..+|++| +||+ .||+.+-+ ...+|++++|..
T Consensus 102 ~~~DLIV~Gs~~~~~~~lgSva~~v~~~a~~pVLvv~~~ 140 (144)
T PRK15118 102 YDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLR 140 (144)
T ss_pred hCCCEEEEeCcccHHHHHHHHHHHHHhhCCCCEEEecCC
Confidence 3678766 4554 24455544 346788888754
No 277
>PRK12361 hypothetical protein; Provisional
Probab=35.86 E-value=46 Score=25.92 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIY----HAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~----~g~P~i~vP~ 66 (112)
...|++|.-||=||+.|.+. .++|+-++|.
T Consensus 296 ~~~d~Viv~GGDGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 296 AGADIVIACGGDGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred cCCCEEEEECCCcHHHHHHHHHhcCCCCEEEecC
Confidence 45689999999999998873 3677788896
No 278
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=35.84 E-value=1e+02 Score=24.96 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=44.5
Q ss_pred EEeCCChhHHHHHHHhCCCeEeecC-------ccchHHH----------------HHHHHHcCceeeecCCCCCHHHHHH
Q psy10599 42 FITHGGVHSAFESIYHAVPMVIVPL-------FADQKQN----------------GQKAEEEGYGLMVDFDVFDYEELRR 98 (112)
Q Consensus 42 ~I~hgG~~t~~ea~~~g~P~i~vP~-------~~dq~~n----------------a~~~~~~g~g~~l~~~~~~~~~l~~ 98 (112)
-.-|.|...+..|++++.+++++=+ +++|+.= .+.....|+..+-..+..+.+++.+
T Consensus 456 TF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~ 535 (640)
T COG4231 456 TFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSE 535 (640)
T ss_pred cccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHH
Confidence 4568899999999999999998864 3566543 1222234555444444567888999
Q ss_pred HHHHHhcC
Q psy10599 99 KVHQVLYE 106 (112)
Q Consensus 99 ~l~~~l~~ 106 (112)
++++.++-
T Consensus 536 ~~keale~ 543 (640)
T COG4231 536 AIKEALEV 543 (640)
T ss_pred HHHHHhcC
Confidence 99988753
No 279
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=35.81 E-value=24 Score=25.44 Aligned_cols=44 Identities=20% Similarity=0.098 Sum_probs=33.0
Q ss_pred cEEEeCCChhHHH--HHHHhCCCeEeecCccchHHHHHH-HHHcCce
Q psy10599 40 RLFITHGGVHSAF--ESIYHAVPMVIVPLFADQKQNGQK-AEEEGYG 83 (112)
Q Consensus 40 ~~~I~hgG~~t~~--ea~~~g~P~i~vP~~~dq~~na~~-~~~~g~g 83 (112)
.+.=--||+|+++ -|-.+|+-++.+.+..+|..+++. +.+.|..
T Consensus 75 ~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 3333456666554 445669999999999999999987 6778887
No 280
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=35.62 E-value=94 Score=25.09 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=38.0
Q ss_pred ChhhhcCCCCccEEEeCC-----ChhHHHHHHHhCCCeEeecCcc-chHHHHH--HHHHcCceeeecCCCCCHHHHHHHH
Q psy10599 29 VHFSSSAHPKCRLFITHG-----GVHSAFESIYHAVPMVIVPLFA-DQKQNGQ--KAEEEGYGLMVDFDVFDYEELRRKV 100 (112)
Q Consensus 29 ~~~~~l~~~~~~~~I~hg-----G~~t~~ea~~~g~P~i~vP~~~-dq~~na~--~~~~~g~g~~l~~~~~~~~~l~~~l 100 (112)
+..+++ ..|++-|-.. |+ |-+|+.++|+|.|.--+.+ -+..+-. .-...|+-++- +...+.++..+.|
T Consensus 462 ~Y~dfv--~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~Vvd-R~~~n~~e~v~~l 537 (633)
T PF05693_consen 462 DYYDFV--RGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVD-RRDKNYDESVNQL 537 (633)
T ss_dssp -HHHHH--HHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE--SSSS-HHHHHHHH
T ss_pred CHHHHh--ccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEe-CCCCCHHHHHHHH
Confidence 455566 5778877766 55 6789999999999976531 1111110 11345666554 4455777666666
Q ss_pred HHHh
Q psy10599 101 HQVL 104 (112)
Q Consensus 101 ~~~l 104 (112)
.+.|
T Consensus 538 a~~l 541 (633)
T PF05693_consen 538 ADFL 541 (633)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 281
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=35.55 E-value=1.3e+02 Score=19.61 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCc
Q psy10599 70 QKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 70 q~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~ 107 (112)
+..|..+-++.|.-.++..+..+.++|...+++-|.|+
T Consensus 97 ~~lN~~Y~~kFGfpFvi~v~g~~~~~Il~~l~~Rl~n~ 134 (157)
T TIGR03164 97 TRLNNAYRARFGFPFIMAVKGKTKQSILAAFEARLNND 134 (157)
T ss_pred HHHHHHHHHHCCCeeEEeeCCCCHHHHHHHHHHHHCCC
Confidence 35688889999988888766668888888888877765
No 282
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.47 E-value=1.1e+02 Score=22.63 Aligned_cols=45 Identities=9% Similarity=-0.046 Sum_probs=34.5
Q ss_pred CcEEEecCCChhh---hcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCc
Q psy10599 20 AVYSIFDSFVHFS---SSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLF 67 (112)
Q Consensus 20 ~~~~~~~~~~~~~---~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~ 67 (112)
-++....|+||.+ +| -.||+-+-+|- -|+.-|...|+|++--=+.
T Consensus 238 lrvvklPFvpqddyd~LL--~lcD~n~VRGE-DSFVRAq~agkPflWHIYp 285 (370)
T COG4394 238 LRVVKLPFVPQDDYDELL--WLCDFNLVRGE-DSFVRAQLAGKPFLWHIYP 285 (370)
T ss_pred eEEEEecCCcHhHHHHHH--Hhcccceeecc-hHHHHHHHcCCCcEEEecC
Confidence 3567778999754 56 57899888775 6788999999999976443
No 283
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=35.45 E-value=52 Score=24.71 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=29.3
Q ss_pred EecCCChhhhcCCCCccEEEeCCC------------hhHHHHHHHhCCCeEeec
Q psy10599 24 IFDSFVHFSSSAHPKCRLFITHGG------------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~I~hgG------------~~t~~ea~~~g~P~i~vP 65 (112)
+.+++...+.+ ..+|++||-=| .+-..-|-.+++|++++.
T Consensus 271 v~~~~~l~~~l--~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~ 322 (375)
T TIGR00045 271 VLELLDLEQKI--KDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIA 322 (375)
T ss_pred HHHhhCHHHHh--cCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEe
Confidence 44567777778 78999999877 333344567899999984
No 284
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=35.45 E-value=55 Score=24.15 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCCccEEEeCCChhHHHHHH---H--------------------hCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESI---Y--------------------HAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~---~--------------------~g~P~i~vP~~ 67 (112)
..++|++|.=||. +++++. + .++|+|.||..
T Consensus 81 ~~~~D~IIaiGGG-s~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 81 AAGADGVIGFGGG-SSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 3588999999984 444432 1 27899999974
No 285
>PRK10116 universal stress protein UspC; Provisional
Probab=35.41 E-value=86 Score=19.01 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=10.1
Q ss_pred HhCCCeEeecCccc
Q psy10599 56 YHAVPMVIVPLFAD 69 (112)
Q Consensus 56 ~~g~P~i~vP~~~d 69 (112)
..++|++++|..+|
T Consensus 129 ~~~~pVLvv~~~~~ 142 (142)
T PRK10116 129 SSEVDVLLVPLTGD 142 (142)
T ss_pred cCCCCEEEEeCCCC
Confidence 35888888887554
No 286
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=35.17 E-value=22 Score=25.77 Aligned_cols=49 Identities=6% Similarity=0.043 Sum_probs=34.1
Q ss_pred ccCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC
Q psy10599 16 KTTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~ 66 (112)
++. ++..++.|++...-.. +.+|+++|.+-+-.+.+.+-.+.+++.+|.
T Consensus 96 ~~~-p~~~vV~YVNssAevK-A~sdi~cTSsNA~kIv~~l~~~~~IlF~PD 144 (296)
T PF02445_consen 96 EEY-PDAAVVTYVNSSAEVK-AESDICCTSSNAVKIVRSLPQDKKILFLPD 144 (296)
T ss_dssp HHS-TTS-EEEESSS-HHHH-TT-SEEE-TTTHHHHHHCSS-SE-EEEES-
T ss_pred HHC-CCCeEEEEecChHHHH-ccCCeEEECccHHHHHHHhcCCCeEEEcCc
Confidence 344 4566888998766555 589999999999999999888888999985
No 287
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.15 E-value=1.8e+02 Score=21.23 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=23.1
Q ss_pred EeCCChhHHHHHHHhCCCeEee-cCccchHHHHHHHHHcCce
Q psy10599 43 ITHGGVHSAFESIYHAVPMVIV-PLFADQKQNGQKAEEEGYG 83 (112)
Q Consensus 43 I~hgG~~t~~ea~~~g~P~i~v-P~~~dq~~na~~~~~~g~g 83 (112)
+.--|.-.+.|++..|.|+|++ |+++.=..-+..+.+++..
T Consensus 107 ~~v~g~e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~ 148 (308)
T COG1560 107 VEVEGLEHLEEALANGRGVILVTPHFGNWELGGRALAQQGPK 148 (308)
T ss_pred eeecCHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCC
Confidence 4444566666777777777665 5554444444455544433
No 288
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=35.08 E-value=1.3e+02 Score=19.74 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=30.6
Q ss_pred hHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCc
Q psy10599 70 QKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 70 q~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~ 107 (112)
+..|..+-++.|.-.++.....+.++|...+++-+.|+
T Consensus 102 ~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~ 139 (166)
T PRK13798 102 AAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHND 139 (166)
T ss_pred HHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHHhcCC
Confidence 46788999999988888766668888888888877764
No 289
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=34.77 E-value=68 Score=23.55 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=26.2
Q ss_pred cCCCCccEEEeCCChhHHHHHHH---h------CCCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY---H------AVPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~---~------g~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-+.. . ++|+|.+|..
T Consensus 88 l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkT 130 (338)
T cd00363 88 LKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338)
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeec
Confidence 44458899999999888865532 2 9999999974
No 290
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=34.66 E-value=57 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=21.2
Q ss_pred CCccEEEeCCChhHHHHHH-----Hh------------------CCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFESI-----YH------------------AVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~-----~~------------------g~P~i~vP~~ 67 (112)
.++|++|.=||. ++.+.. .. ++|+|.||..
T Consensus 79 ~~~d~IiaiGGG-s~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 79 EGCDGVIAVGGG-SVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 578999999984 333321 22 7899999974
No 291
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=34.48 E-value=60 Score=25.15 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=31.7
Q ss_pred HhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHH
Q psy10599 56 YHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVH 101 (112)
Q Consensus 56 ~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~ 101 (112)
..|+|+|...-.---..+.+.+++.|.+..+++...+.++|..++.
T Consensus 360 lpGiP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~ 405 (470)
T TIGR03852 360 APGIPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVK 405 (470)
T ss_pred CCCCceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHh
Confidence 4599999975432233445667777888888887788877776653
No 292
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=33.73 E-value=41 Score=19.02 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=30.0
Q ss_pred cEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeee
Q psy10599 21 VYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l 86 (112)
++....|.|... +++-++|.||-.--. + . ...-|..+.+.|..+..
T Consensus 3 ~L~~~~w~p~~~----~k~~v~i~HG~~eh~-~--r-------------y~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 3 KLFYRRWKPENP----PKAVVVIVHGFGEHS-G--R-------------YAHLAEFLAEQGYAVFA 48 (79)
T ss_pred EEEEEEecCCCC----CCEEEEEeCCcHHHH-H--H-------------HHHHHHHHHhCCCEEEE
Confidence 467788888776 478899999963211 1 1 13456777777777664
No 293
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=33.68 E-value=91 Score=22.12 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=21.1
Q ss_pred cEEEeCCChhHHHHHHHhCCCeEeecCc
Q psy10599 40 RLFITHGGVHSAFESIYHAVPMVIVPLF 67 (112)
Q Consensus 40 ~~~I~hgG~~t~~ea~~~g~P~i~vP~~ 67 (112)
|++.+ |--+..+|+...|+|.|.+...
T Consensus 100 dv~yS-GTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 100 DVIYS-GTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ceeee-ehHHHHHHHHHcCccceeeeeh
Confidence 44444 6567888999999999999764
No 294
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=33.57 E-value=68 Score=19.13 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=21.1
Q ss_pred CCccEEEe---C--CChhHHHHH---HHhCCCeEeecCc
Q psy10599 37 PKCRLFIT---H--GGVHSAFES---IYHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~---h--gG~~t~~ea---~~~g~P~i~vP~~ 67 (112)
..||++|. . .+.||..|. ...|+|++++-..
T Consensus 60 ~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 60 RECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 45676543 2 478999996 5679999998553
No 295
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=33.48 E-value=66 Score=21.56 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=33.6
Q ss_pred CccE-EEeCCChhHHH----------------HHHHhCCCeEeecCc--c--chHHHHHHHHHcCceeeec
Q psy10599 38 KCRL-FITHGGVHSAF----------------ESIYHAVPMVIVPLF--A--DQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 38 ~~~~-~I~hgG~~t~~----------------ea~~~g~P~i~vP~~--~--dq~~na~~~~~~g~g~~l~ 87 (112)
++|+ +|..+-+||+. -++..++|++++|.. . -...|...+.+.|+-+.-.
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P 148 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPP 148 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECC
Confidence 4444 56666666654 245679999999963 1 2357888889888876643
No 296
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=33.18 E-value=1.6e+02 Score=20.21 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=44.1
Q ss_pred hhhhcCCCCccEE-EeCCChhHHHH---------------HHHhCCCeEeecCcc-------chHHHHHHHHHcCceeee
Q psy10599 30 HFSSSAHPKCRLF-ITHGGVHSAFE---------------SIYHAVPMVIVPLFA-------DQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 30 ~~~~l~~~~~~~~-I~hgG~~t~~e---------------a~~~g~P~i~vP~~~-------dq~~na~~~~~~g~g~~l 86 (112)
+.++. .++|++ |..+.+||+.. +...++|++++|... --..|...+.+.|+-+.-
T Consensus 90 HI~La--~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~ 167 (209)
T PLN02496 90 HIELR--RWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIP 167 (209)
T ss_pred hhHhh--hhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEEC
Confidence 44544 467764 55555665542 222479999999632 224566777777765442
Q ss_pred cC------------CCCCHHHHHHHHHHHhcC
Q psy10599 87 DF------------DVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 87 ~~------------~~~~~~~l~~~l~~~l~~ 106 (112)
.. .-.+++++...+.+.+..
T Consensus 168 P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 168 PVTKRLACGDYGNGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred CCcCcccCCCcCCCCCCCHHHHHHHHHHHHhh
Confidence 21 113577887777777643
No 297
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=32.35 E-value=22 Score=20.75 Aligned_cols=17 Identities=29% Similarity=0.725 Sum_probs=13.5
Q ss_pred HHHHHhCCCeEeecCcc
Q psy10599 52 FESIYHAVPMVIVPLFA 68 (112)
Q Consensus 52 ~ea~~~g~P~i~vP~~~ 68 (112)
.+..+.|+|+++.|...
T Consensus 52 ~~G~Y~G~PViV~PI~~ 68 (84)
T PF09884_consen 52 IEGPYKGVPVIVAPIKD 68 (84)
T ss_pred CCcccCCeeEEEEEEEc
Confidence 35578899999999753
No 298
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=32.25 E-value=73 Score=20.52 Aligned_cols=29 Identities=10% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..+++++.| .+.+.+|...+.|+|++.
T Consensus 63 g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~ 97 (172)
T PF02776_consen 63 GRPGVVIVTSGPGATNALTGLANAYADRIPVLVIT 97 (172)
T ss_dssp SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEE
T ss_pred ccceEEEeecccchHHHHHHHhhcccceeeEEEEe
Confidence 45677888877 456778889999999985
No 299
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=32.24 E-value=2.7e+02 Score=23.18 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHhCCCeEeecC
Q psy10599 45 HGGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 45 hgG~~t~~ea~~~g~P~i~vP~ 66 (112)
|+|+-++.-+++.|.-.+++|-
T Consensus 199 ~~G~LAl~aglA~gAd~ilIPE 220 (762)
T cd00764 199 HCGYLALVSGLATGADWIFIPE 220 (762)
T ss_pred CchHHHHHHHhccCCCEEEecC
Confidence 8999999999999999999985
No 300
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=32.10 E-value=58 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=22.5
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEee
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
.++ ..+|++|+.-+ |.++=|.+.|+|+|.+
T Consensus 179 ali--~~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALI--SRADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHH--HTSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred HHH--hcCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 456 68999999876 5566688999999998
No 301
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.04 E-value=67 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.539 Sum_probs=22.2
Q ss_pred CCCccEEEeCCChhHHHHHH---H--------------------hCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESI---Y--------------------HAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~---~--------------------~g~P~i~vP~~ 67 (112)
...+|++|.=||. +++++. + .++|+|.||..
T Consensus 78 ~~~~D~IIaiGGG-S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 78 EGGCDVIIALGGG-SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 3578999999984 455532 2 36899999974
No 302
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=31.82 E-value=1.6e+02 Score=19.58 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCccE-EEeCCChhHHHHH-------------HHh--CCCeEeecCcc-------chHHHHHHHHHcCceeeecC-----
Q psy10599 37 PKCRL-FITHGGVHSAFES-------------IYH--AVPMVIVPLFA-------DQKQNGQKAEEEGYGLMVDF----- 88 (112)
Q Consensus 37 ~~~~~-~I~hgG~~t~~ea-------------~~~--g~P~i~vP~~~-------dq~~na~~~~~~g~g~~l~~----- 88 (112)
.++|+ +|..+-+||+.-. +.. ++|++++|... -...|...+.+.|+-+.-..
T Consensus 76 ~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la 155 (182)
T PRK07313 76 KRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLA 155 (182)
T ss_pred cccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccc
Confidence 45565 5666666665422 344 89999999621 23678888888887655332
Q ss_pred -------CCCCHHHHHHHHHHHhc
Q psy10599 89 -------DVFDYEELRRKVHQVLY 105 (112)
Q Consensus 89 -------~~~~~~~l~~~l~~~l~ 105 (112)
.-.+.+++.+.+.+.+.
T Consensus 156 ~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 156 CGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cCCccCCCCCCHHHHHHHHHHHhc
Confidence 12356777777776653
No 303
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=31.15 E-value=1.5e+02 Score=19.47 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=34.9
Q ss_pred cCCCcEEEecC--CChhhhcCCCCccEEEeCCChhHH---------HHHHHhCCCeEeecCccchHHHHH
Q psy10599 17 TTAAVYSIFDS--FVHFSSSAHPKCRLFITHGGVHSA---------FESIYHAVPMVIVPLFADQKQNGQ 75 (112)
Q Consensus 17 ~~~~~~~~~~~--~~~~~~l~~~~~~~~I~hgG~~t~---------~ea~~~g~P~i~vP~~~dq~~na~ 75 (112)
+....+.+..+ .+..++.. ..-|.+|--||-++. .+.+..++|++.+.+ +.|..+..
T Consensus 21 ~~~~~~~v~~~~~~~~~~~~~-~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~-G~Qlla~~ 88 (191)
T PRK06774 21 ELGTEVMVKRNDELQLTDIEQ-LAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL-GHQALGQA 88 (191)
T ss_pred HCCCcEEEEeCCCCCHHHHHh-cCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH-HHHHHHHH
Confidence 33445666664 34444332 245788888887664 333456899999975 67766554
No 304
>PRK14072 6-phosphofructokinase; Provisional
Probab=31.15 E-value=76 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=25.9
Q ss_pred cCCCCccEEEeCCChhHHHHHHH-------hC--CCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY-------HA--VPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~-------~g--~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-|.. .| +|+|.+|-.
T Consensus 99 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkT 141 (416)
T PRK14072 99 FKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKT 141 (416)
T ss_pred HHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeec
Confidence 44458899999999888865532 46 999999963
No 305
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=31.11 E-value=1.4e+02 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=17.7
Q ss_pred eEeecCccchHHHHHHHHHcCceeeec
Q psy10599 61 MVIVPLFADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 61 ~i~vP~~~dq~~na~~~~~~g~g~~l~ 87 (112)
+.++|+..|-+.-|+++++.|+..++.
T Consensus 124 F~VlPY~~~D~v~akrL~d~GcaavMP 150 (247)
T PF05690_consen 124 FVVLPYCTDDPVLAKRLEDAGCAAVMP 150 (247)
T ss_dssp -EEEEEE-S-HHHHHHHHHTT-SEBEE
T ss_pred CEEeecCCCCHHHHHHHHHCCCCEEEe
Confidence 455566667788888889988888775
No 306
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=31.08 E-value=1.4e+02 Score=22.53 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=36.1
Q ss_pred cEEEecCCChh---hhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecCccc
Q psy10599 21 VYSIFDSFVHF---SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFAD 69 (112)
Q Consensus 21 ~~~~~~~~~~~---~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~d 69 (112)
.+.+..|++|. .+| -.||+=+-+| --|+.-|...|+|+|--.+.-|
T Consensus 243 ~~~~LPf~~Q~~yD~LL--W~cD~NfVRG-EDSFVRAqWAgkPfvWhIYPQe 291 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLL--WACDLNFVRG-EDSFVRAQWAGKPFVWHIYPQE 291 (371)
T ss_pred EEEEcCCCChhhHHHHH--HhChhcEeec-hhHHHHHHHcCCCceeecccCc
Confidence 46677899874 467 6899988887 4788899999999998766543
No 307
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=30.66 E-value=64 Score=22.83 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCccEEEeCCChhHHHHHHHh--------CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH--------AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~--------g~P~i~vP~ 66 (112)
...|.+|.-||=||+.|.+.. ..|+-++|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 456899999999999888622 236788896
No 308
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=30.44 E-value=1.1e+02 Score=22.00 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=28.0
Q ss_pred cEEEeCCChhHHHHHHHhCCCe--EeecCccchHHHHHHHHHcCc
Q psy10599 40 RLFITHGGVHSAFESIYHAVPM--VIVPLFADQKQNGQKAEEEGY 82 (112)
Q Consensus 40 ~~~I~hgG~~t~~ea~~~g~P~--i~vP~~~dq~~na~~~~~~g~ 82 (112)
.++++-||+..+.+++..--|- |.++ ..-|+.||+-+...|-
T Consensus 276 ~Iil~GGGa~ll~~~l~~~f~~~~i~~~-~dp~~ANarG~~~~g~ 319 (320)
T TIGR03739 276 NIVLVGGGAFLFKKAVKAAFPKHRIVEV-DEPMFANVRGFQIAGL 319 (320)
T ss_pred EEEEeCCcHHHHHHHHHHHCCCCeeEec-CCcHHHHHHHHHHhhc
Confidence 3678888887777887654443 2222 2349999998887663
No 309
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=30.39 E-value=2.1e+02 Score=20.71 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEee-cCccc-------hHHHHHHHHHcCceeeecCCCCC---HHHHHHH
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIV-PLFAD-------QKQNGQKAEEEGYGLMVDFDVFD---YEELRRK 99 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~v-P~~~d-------q~~na~~~~~~g~g~~l~~~~~~---~~~l~~~ 99 (112)
..+..+++.|| ..+.+-|...|.+.+++ |...+ +..|-..++.+|+-+++...... .+.+..+
T Consensus 64 ~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a 143 (337)
T TIGR01274 64 QGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERA 143 (337)
T ss_pred cCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHH
Confidence 35677888765 23334456779998876 54322 35677888999998887654322 2344444
Q ss_pred HHHHh
Q psy10599 100 VHQVL 104 (112)
Q Consensus 100 l~~~l 104 (112)
.+.+.
T Consensus 144 ~~~~~ 148 (337)
T TIGR01274 144 LEEVR 148 (337)
T ss_pred HHHHH
Confidence 44443
No 310
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=30.35 E-value=66 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=22.0
Q ss_pred CCCccEEEeCCChhHHHHHHH-------------------------hCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESIY-------------------------HAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~~-------------------------~g~P~i~vP~~ 67 (112)
..++|++|.=||. +++++.- .++|+|.||..
T Consensus 85 ~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 85 ASGADYLIAIGGG-SPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred hcCCCEEEEeCCh-HHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 3589999999984 4444431 25799999974
No 311
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.31 E-value=90 Score=22.98 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.1
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~ 66 (112)
.+-|++|++|+.-...-|...|+|.|.+-.
T Consensus 82 ~~pDv~is~~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 82 FKPDVAISFGSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred hCCCEEEecCcHHHHHHHHHhCCCeEEEec
Confidence 367999999998777778899999998843
No 312
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=30.22 E-value=2.1e+02 Score=21.49 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=21.7
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEee
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIV 64 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~v 64 (112)
+..+++++.| .+.+.+|...++|+|++
T Consensus 63 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 5677888877 34667889999999999
No 313
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=30.14 E-value=62 Score=22.90 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCCeEeecCccchHHHHHHHHHcCceeeecCC--------CCCHHHHHHHHHH
Q psy10599 58 AVPMVIVPLFADQKQNGQKAEEEGYGLMVDFD--------VFDYEELRRKVHQ 102 (112)
Q Consensus 58 g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~--------~~~~~~l~~~l~~ 102 (112)
.--++++|+..|-+.-|+++++.|+..++... -.++..|.-.+.+
T Consensus 128 ~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~ 180 (262)
T COG2022 128 KEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEE 180 (262)
T ss_pred hCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHh
Confidence 44577889999999999999999998887532 2456666555444
No 314
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=30.04 E-value=74 Score=23.46 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=10.6
Q ss_pred CCCccEEEeCCCh
Q psy10599 36 HPKCRLFITHGGV 48 (112)
Q Consensus 36 ~~~~~~~I~hgG~ 48 (112)
..++|++|.=||.
T Consensus 73 ~~~~D~IIaiGGG 85 (374)
T cd08183 73 NAGCDVVIAIGGG 85 (374)
T ss_pred hcCCCEEEEecCc
Confidence 3579999999984
No 315
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=29.99 E-value=1.6e+02 Score=19.26 Aligned_cols=51 Identities=6% Similarity=0.004 Sum_probs=31.5
Q ss_pred hCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCccc
Q psy10599 57 HAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 57 ~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~~ 109 (112)
..+|+|++....+. .....+.+.|+.-.+.. ..+.++|..+++.++....|
T Consensus 79 ~~~~iIvls~~~~~-~~~~~a~~~Ga~~yl~K-~~~~~~l~~ai~~v~~g~~~ 129 (216)
T PRK10840 79 PSLSIIVLTMNNNP-AILSAVLDLDIEGIVLK-QGAPTDLPKALAALQKGKKF 129 (216)
T ss_pred CCCcEEEEEecCCH-HHHHHHHHCCCeEEEEC-CCCHHHHHHHHHHHHCCCee
Confidence 45788887654433 33344455566433332 45789999999998876544
No 316
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=29.96 E-value=68 Score=21.09 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHH-HcCceeeecCCCCCHHHHHHHHHHHhc
Q psy10599 72 QNGQKAE-EEGYGLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 72 ~na~~~~-~~g~g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
.+-..++ .-|+|+++ +++++.++|.+.+.
T Consensus 102 ~d~~~Fe~~cGVGV~V-----T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 102 IDVAEFEKACGVGVVV-----TPEQIEAAVEKYIE 131 (164)
T ss_dssp --HHHHHHTTTTT---------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCeEE-----CHHHHHHHHHHHHH
Confidence 3344444 45899887 68999999998885
No 317
>PLN02884 6-phosphofructokinase
Probab=29.90 E-value=80 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=25.8
Q ss_pred cCCCCccEEEeCCChhHHHHHHH-------hC--CCeEeecCc
Q psy10599 34 SAHPKCRLFITHGGVHSAFESIY-------HA--VPMVIVPLF 67 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~~-------~g--~P~i~vP~~ 67 (112)
|.....|.+|.=||-+|..-|.. .| +|+|.+|-.
T Consensus 139 L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkT 181 (411)
T PLN02884 139 IEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKT 181 (411)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEecccc
Confidence 43457899999999988865432 45 999999963
No 318
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=29.62 E-value=1.6e+02 Score=19.21 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCc
Q psy10599 70 QKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 70 q~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~ 107 (112)
+..|..+-++.|.-.++..+..+.++|...+++-|.|+
T Consensus 97 ~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~ 134 (158)
T TIGR03180 97 LEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLPND 134 (158)
T ss_pred HHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHhCCC
Confidence 35688888999988887766678888888888877764
No 319
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.45 E-value=83 Score=24.55 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 65 g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 65 GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 35778888877 456789999999999983
No 320
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=29.23 E-value=72 Score=24.95 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCccEEEeCCChhH------HHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGGVHS------AFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~t------~~ea~~~g~P~i~vP 65 (112)
.+..+++++.|-|. +.+|...++|+|++.
T Consensus 73 g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 73 GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 35677888888665 889999999999984
No 321
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=28.98 E-value=90 Score=22.96 Aligned_cols=30 Identities=37% Similarity=0.688 Sum_probs=22.5
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
.++|++|.=||. ++.++ ...++|+|.||..
T Consensus 83 ~~~d~IIavGGG-sv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 83 NGCDVVIGIGGG-KTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred cCCCEEEEecCh-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 478999999994 44443 3348999999973
No 322
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.92 E-value=82 Score=24.60 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 66 g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 66 GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 35677888877 345779999999999984
No 323
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=28.92 E-value=78 Score=17.80 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=23.3
Q ss_pred CCCc-EEEecCC-Ch-hhhcCCCCccEEEe-CCCh--hHHHHHHHhCCCeEeec
Q psy10599 18 TAAV-YSIFDSF-VH-FSSSAHPKCRLFIT-HGGV--HSAFESIYHAVPMVIVP 65 (112)
Q Consensus 18 ~~~~-~~~~~~~-~~-~~~l~~~~~~~~I~-hgG~--~t~~ea~~~g~P~i~vP 65 (112)
.+++ +.+.+.+ |. ..+.. .++..+|+ +||. -+..-|-.+|+|.++-.
T Consensus 8 ~~~~~IlV~~~~~p~~~~~~~-~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 8 LPEGVILVAEELTPSDLALDL-QRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TTSTEEEEESS--TTCHHSHH-TTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred CCCCEEEEECCCCHHHHhcch-hheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 3344 5566553 32 22122 44555555 4553 22334568899999864
No 324
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=28.76 E-value=85 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCccEEEeCCChhHHHHHH---Hh--------------------CCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFESI---YH--------------------AVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea~---~~--------------------g~P~i~vP~~ 67 (112)
...+|++|.=||. +++++. .. ++|+|.||..
T Consensus 83 ~~~~d~IIaiGGG-sviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 83 ENGCDVIIAVGGG-SPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 3578999999984 444443 11 3699999974
No 325
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=28.48 E-value=89 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.6
Q ss_pred cCCCCccEEEeCCChhHHHHHH--H--------hCCCeEeecC
Q psy10599 34 SAHPKCRLFITHGGVHSAFESI--Y--------HAVPMVIVPL 66 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~--~--------~g~P~i~vP~ 66 (112)
|.....|.+|.=||-+|..-+. . +|+|+|.+|-
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPk 516 (762)
T cd00764 474 FQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPA 516 (762)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecc
Confidence 3335789999999988876442 2 6899999996
No 326
>PRK10586 putative oxidoreductase; Provisional
Probab=28.45 E-value=93 Score=23.01 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCccEEEeCCChhHHHHHH-----HhCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFESI-----YHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~-----~~g~P~i~vP~~ 67 (112)
..+|++|.=||.. +.++. ..++|+|.+|..
T Consensus 85 ~~~d~iiavGGGs-~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 85 DDRQVVIGVGGGA-LLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred cCCCEEEEecCcH-HHHHHHHHHhhcCCCEEEEeCC
Confidence 3579999999854 43432 348999999963
No 327
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.41 E-value=1.2e+02 Score=17.16 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=27.7
Q ss_pred hCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHH
Q psy10599 57 HAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVH 101 (112)
Q Consensus 57 ~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~ 101 (112)
..+|+|++-...+.......+ +.|+.-.+. +.++.++|.++|+
T Consensus 70 ~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~-kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 PSIPIIVVTDEDDSDEVQEAL-RAGADDYLS-KPFSPEELRAAIN 112 (112)
T ss_dssp TTSEEEEEESSTSHHHHHHHH-HTTESEEEE-SSSSHHHHHHHHH
T ss_pred ccccEEEecCCCCHHHHHHHH-HCCCCEEEE-CCCCHHHHHHhhC
Confidence 478888887555544444444 666654444 2568888888774
No 328
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=28.18 E-value=2e+02 Score=19.54 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=32.0
Q ss_pred hCCCeEeecCccchHHHHHHHHHcCc-eeeecCCCCCHHHHHHHHHHHhcCccc
Q psy10599 57 HAVPMVIVPLFADQKQNGQKAEEEGY-GLMVDFDVFDYEELRRKVHQVLYEPKY 109 (112)
Q Consensus 57 ~g~P~i~vP~~~dq~~na~~~~~~g~-g~~l~~~~~~~~~l~~~l~~~l~~~~~ 109 (112)
.+.|+|++-...+... .......|+ |...+ +.+.++|.++|+.++.+..|
T Consensus 80 p~~~vvvlt~~~~~~~-~~~~~~~Ga~G~l~K--~~~~~~L~~aI~~v~~G~~~ 130 (216)
T PRK10100 80 NNIKILLLNTPEDYPY-REIENWPHINGVFYA--MEDQERVVNGLQGVLRGECY 130 (216)
T ss_pred CCCcEEEEECCchhHH-HHHHHhcCCeEEEEC--CCCHHHHHHHHHHHHcCCcc
Confidence 4678888876655322 222222466 44443 45899999999999877655
No 329
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=28.13 E-value=1.1e+02 Score=21.81 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=12.3
Q ss_pred HHHhCCCeEeecCccchHH
Q psy10599 54 SIYHAVPMVIVPLFADQKQ 72 (112)
Q Consensus 54 a~~~g~P~i~vP~~~dq~~ 72 (112)
|-++|+|++++ .+|+..
T Consensus 143 Ag~~gVPV~lV--sGDd~~ 159 (270)
T cd08769 143 AGEFGVPVVLV--AGDSEL 159 (270)
T ss_pred HhhcCCCEEEE--ecCHHH
Confidence 45779999999 466544
No 330
>PRK09932 glycerate kinase II; Provisional
Probab=27.94 E-value=86 Score=23.63 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=35.8
Q ss_pred EecCCChhhhcCCCCccEEEeCCC------------hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeee
Q psy10599 24 IFDSFVHFSSSAHPKCRLFITHGG------------VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~I~hgG------------~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l 86 (112)
+.+++...+.+ ..+|++||-=| .+-..-|-.+++|+|++.=.-+ .+...+.+.|+..+.
T Consensus 272 v~~~~~l~~~l--~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~--~~~~~~~~~g~~~~~ 342 (381)
T PRK09932 272 VLNAVNLEQAV--QGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLG--DGVEVVHQYGIDAVF 342 (381)
T ss_pred HHHhcChHHHh--ccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecccC--CChHHHHhcCceEEE
Confidence 44566677777 78999999877 2223345567999999853211 122335555654443
No 331
>PRK10736 hypothetical protein; Provisional
Probab=27.73 E-value=2.5e+02 Score=21.19 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=35.7
Q ss_pred CccEEEe---CCC-hhHHHHHHHhCCCeEeecCccc--hHHHHHHHHHcCceeeecCCCCCHHHHHHHH
Q psy10599 38 KCRLFIT---HGG-VHSAFESIYHAVPMVIVPLFAD--QKQNGQKAEEEGYGLMVDFDVFDYEELRRKV 100 (112)
Q Consensus 38 ~~~~~I~---hgG-~~t~~ea~~~g~P~i~vP~~~d--q~~na~~~~~~g~g~~l~~~~~~~~~l~~~l 100 (112)
.+-+||- ++| ..|.-.|+..|+++.++|-..+ ...-+..+-+.|+..+. +.+++.+.+
T Consensus 220 ~~viVvEA~~kSGsliTA~~Al~~gR~VfavPG~i~~~~s~G~n~LI~~GA~lv~-----~~~Di~~~l 283 (374)
T PRK10736 220 KGVLVVEAALRSGSLVTARCALEQGRDVFALPGPIGNPGSEGPHWLIKQGAYLVT-----SPEDILENL 283 (374)
T ss_pred CeEEEEEeCCCCchHHHHHHHHHhCCeEEEEcCCCCCccchhHHHHHHCCCEEeC-----CHHHHHHHh
Confidence 4445555 555 5777889999999999985432 23334455566744443 345555444
No 332
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=27.60 E-value=81 Score=22.19 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=19.0
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFES-----IYHAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~ 66 (112)
..+|++|.=|| |++.+. ...|+|.+.+|.
T Consensus 74 ~~~d~ii~vGg-G~i~D~~K~~A~~~~~p~isVPT 107 (250)
T PF13685_consen 74 KDADLIIGVGG-GTIIDIAKYAAFELGIPFISVPT 107 (250)
T ss_dssp TT--EEEEEES-HHHHHHHHHHHHHHT--EEEEES
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecc
Confidence 47789999887 566544 467999999997
No 333
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=27.47 E-value=91 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=24.5
Q ss_pred hhhcCCCCccEEEeCCChhHHHHHHHhCCCeEee
Q psy10599 31 FSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 31 ~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
..++ ..|+++|+.-. |..+=|.+.|+|+|.+
T Consensus 257 ~ali--~~a~l~v~nDS-Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 257 GALI--DHAQLFIGVDS-APAHIAAAVNTPLICL 287 (352)
T ss_pred HHHH--HhCCEEEecCC-HHHHHHHHcCCCEEEE
Confidence 3456 68999999876 5566688999999887
No 334
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=27.37 E-value=2.5e+02 Score=20.84 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=8.2
Q ss_pred cEEEeCCChhHHH
Q psy10599 40 RLFITHGGVHSAF 52 (112)
Q Consensus 40 ~~~I~hgG~~t~~ 52 (112)
+++|+.|+...+.
T Consensus 143 ~Iiit~G~~~al~ 155 (431)
T PRK15481 143 EIDLTSGAIDAIE 155 (431)
T ss_pred eEEEecCcHHHHH
Confidence 5777777765443
No 335
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=27.30 E-value=2.3e+02 Score=20.04 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=26.2
Q ss_pred HHHhCCCeEee-cCccchHHHHHHHHHcCceeeecCCCC
Q psy10599 54 SIYHAVPMVIV-PLFADQKQNGQKAEEEGYGLMVDFDVF 91 (112)
Q Consensus 54 a~~~g~P~i~v-P~~~dq~~na~~~~~~g~g~~l~~~~~ 91 (112)
|-.+|.|..++ |....+. ....++..|+-+.+.....
T Consensus 76 a~~~Gl~~~i~vp~~~~~~-k~~~~~~~GA~v~~~~~~~ 113 (298)
T TIGR01139 76 AAARGYKLILTMPETMSIE-RRKLLKAYGAELVLTPGAE 113 (298)
T ss_pred HHHcCCeEEEEeCCccCHH-HHHHHHHcCCEEEEECCCC
Confidence 44679998776 7765544 4677889999888765443
No 336
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.88 E-value=90 Score=22.72 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=22.9
Q ss_pred CCCccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 36 HPKCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 36 ~~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
..++|++|.=||. +++++ +..++|+|.||..
T Consensus 75 ~~~~D~IIavGGG-S~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 75 DNGADVVIGIGGG-KTLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred hcCCCEEEEecCc-hhhHHHHHHHHHcCCCEEEeCCc
Confidence 3588999999995 44443 3348999999973
No 337
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=26.60 E-value=95 Score=22.94 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=20.5
Q ss_pred CCcc---EEEeCCChhHHHHHH-------HhCCCeEeecCc
Q psy10599 37 PKCR---LFITHGGVHSAFESI-------YHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~---~~I~hgG~~t~~ea~-------~~g~P~i~vP~~ 67 (112)
..+| ++|.=||. ++..+. .-|+|.|.+|..
T Consensus 80 ~~~dr~~~IIAvGGG-sv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 80 LGATRRSVIVALGGG-VVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred cCCCCCcEEEEECCc-HHHHHHHHHHHHhccCCCEEEecCc
Confidence 3566 89988883 333332 248999999974
No 338
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=26.59 E-value=1.7e+02 Score=18.38 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=39.1
Q ss_pred CCccEEEeCC---C--hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCc
Q psy10599 37 PKCRLFITHG---G--VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 107 (112)
Q Consensus 37 ~~~~~~I~hg---G--~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~ 107 (112)
...|++|.-- + .-.+.+.+....|++++-...+... ...+.+.|+--.+. +..+.+++..+++.++...
T Consensus 46 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~-~~~~~~~ga~~~i~-kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 46 RGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPAL-VEQALNAGARGFLS-KRCSPDELIAAVHTVATGG 119 (196)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHH-HHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHcCC
Confidence 3467777631 2 1234455566788888754433333 33333445433333 2467888999999887654
No 339
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=26.55 E-value=80 Score=22.58 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=22.7
Q ss_pred CeEeecCccchHHHHHHHHHcCceeeecC
Q psy10599 60 PMVIVPLFADQKQNGQKAEEEGYGLMVDF 88 (112)
Q Consensus 60 P~i~vP~~~dq~~na~~~~~~g~g~~l~~ 88 (112)
-+.++|+..|-+.-|+++++.|+..++..
T Consensus 137 GF~VlPY~~~D~v~a~rLed~Gc~aVMPl 165 (267)
T CHL00162 137 GFTVLPYINADPMLAKHLEDIGCATVMPL 165 (267)
T ss_pred CCEEeecCCCCHHHHHHHHHcCCeEEeec
Confidence 34666777788888999999998888753
No 340
>PRK07064 hypothetical protein; Provisional
Probab=26.12 E-value=1.1e+02 Score=23.69 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 65 g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 65 GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 45778888877 456778999999999984
No 341
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=26.05 E-value=2e+02 Score=19.22 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=24.0
Q ss_pred ChhhhcCCCCccEEEeCCCh--hHHHHHH-HhCCCeEeecC
Q psy10599 29 VHFSSSAHPKCRLFITHGGV--HSAFESI-YHAVPMVIVPL 66 (112)
Q Consensus 29 ~~~~~l~~~~~~~~I~hgG~--~t~~ea~-~~g~P~i~vP~ 66 (112)
+..+.+...+-|+++..+.. ....+.+ ..|.|++.++.
T Consensus 49 ~n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~ 89 (235)
T cd01149 49 LSAEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPS 89 (235)
T ss_pred cCHHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecC
Confidence 33333333688999986643 2344555 67899998864
No 342
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=25.97 E-value=91 Score=22.24 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=24.1
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEee
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
.++ ..++++|+.-. |..+=|.+.|+|+|.+
T Consensus 247 ali--~~a~l~I~~DS-Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 247 DLI--ALAKAVVTNDS-GLMHVAAALNRPLVAL 276 (334)
T ss_pred HHH--HhCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 456 68999999876 5566688999999987
No 343
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=25.95 E-value=2e+02 Score=20.54 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=12.5
Q ss_pred HHHhCCCeEeecCccchHHHH
Q psy10599 54 SIYHAVPMVIVPLFADQKQNG 74 (112)
Q Consensus 54 a~~~g~P~i~vP~~~dq~~na 74 (112)
|-++|+|++++ .+|+..-.
T Consensus 143 Ag~~gVPV~lv--sGD~~~~~ 161 (263)
T cd08770 143 AAYLGVPVVFV--SGDAGLCA 161 (263)
T ss_pred HhhcCCCEEEE--ecCHHHHH
Confidence 44678999888 45555443
No 344
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=25.90 E-value=1e+02 Score=23.02 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=13.5
Q ss_pred CCCCccEEEeCCChhHHHHH
Q psy10599 35 AHPKCRLFITHGGVHSAFES 54 (112)
Q Consensus 35 ~~~~~~~~I~hgG~~t~~ea 54 (112)
...++|++|.=||.. ++++
T Consensus 103 r~~~~D~IiavGGGS-~iD~ 121 (395)
T PRK15454 103 RESGCDGVIAFGGGS-VLDA 121 (395)
T ss_pred HhcCcCEEEEeCChH-HHHH
Confidence 345899999999954 4443
No 345
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=25.75 E-value=1.1e+02 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=21.7
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
..+|++|.=||. ++.+. ...|+|.|.+|..
T Consensus 86 ~~~d~IIaiGGG-sv~D~ak~vA~~rgip~I~IPTT 120 (350)
T PRK00843 86 VNAGFLIGVGGG-KVIDVAKLAAYRLGIPFISVPTA 120 (350)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHhcCCCEEEeCCC
Confidence 468999998884 33332 3459999999974
No 346
>PLN02470 acetolactate synthase
Probab=25.64 E-value=1.1e+02 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|.+.++|+|++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 46778888877 456779999999999994
No 347
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=25.56 E-value=1.1e+02 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=20.8
Q ss_pred CccEEEeCCChhHHHH-------HHHhCCCeEeecC
Q psy10599 38 KCRLFITHGGVHSAFE-------SIYHAVPMVIVPL 66 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~e-------a~~~g~P~i~vP~ 66 (112)
.+|++|.=||. ++.+ ...-|+|.|.+|.
T Consensus 269 r~D~IIAIGGG-sv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGGG-AATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcCh-HHHHHHHHHHHHHHcCCCEEEeCC
Confidence 58999999983 2222 2346999999997
No 348
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=25.54 E-value=88 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCccEEEeCCChhHHHHHHHh-----------CCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIYH-----------AVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~-----------g~P~i~vP~ 66 (112)
...|.+|.-||=||+.|.+.. .+|+-++|.
T Consensus 167 ~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 167 SKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecC
Confidence 457899999999999998731 367788886
No 349
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.39 E-value=1.1e+02 Score=22.21 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=22.3
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
.++|++|.=||. ++.+. ...++|+|.+|..
T Consensus 75 ~~~D~iIavGGG-s~~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 75 NGADVIIGIGGG-KVLDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHhCCCEEEecCc
Confidence 578999999984 44443 3458999999974
No 350
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=25.31 E-value=1.3e+02 Score=19.91 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=24.6
Q ss_pred hhcCCCCccEEEeCCChhHHH--------------HHHHhCCCeEeecC
Q psy10599 32 SSSAHPKCRLFITHGGVHSAF--------------ESIYHAVPMVIVPL 66 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~--------------ea~~~g~P~i~vP~ 66 (112)
+.+ ..+|.+|--||..+.. ++...|+|++.+..
T Consensus 34 ~~l--~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~ 80 (189)
T PRK13525 34 EDL--DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCA 80 (189)
T ss_pred hHh--ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECH
Confidence 345 5789999999987653 34566899999875
No 351
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.30 E-value=61 Score=17.57 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.8
Q ss_pred hhHHHHHHHhCCCeEee
Q psy10599 48 VHSAFESIYHAVPMVIV 64 (112)
Q Consensus 48 ~~t~~ea~~~g~P~i~v 64 (112)
-.-+.|+...|.|++.+
T Consensus 14 K~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 14 KDKIAESAVMGTPVVAL 30 (58)
T ss_pred hhHHHHHHhcCceeEee
Confidence 34577999999999876
No 352
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.26 E-value=1.1e+02 Score=22.55 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=10.1
Q ss_pred CCccEEEeCCCh
Q psy10599 37 PKCRLFITHGGV 48 (112)
Q Consensus 37 ~~~~~~I~hgG~ 48 (112)
.++|++|.=||.
T Consensus 76 ~~~D~IIavGGG 87 (367)
T cd08182 76 FGPDAVLAVGGG 87 (367)
T ss_pred cCcCEEEEeCCc
Confidence 478999999984
No 353
>PRK08266 hypothetical protein; Provisional
Probab=25.21 E-value=1.2e+02 Score=23.55 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=22.6
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..++++|.| .+.+.+|...++|+|++.
T Consensus 68 ~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 68 RPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 4567888877 457789999999999984
No 354
>PRK10342 glycerate kinase I; Provisional
Probab=25.13 E-value=1.1e+02 Score=23.13 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=36.1
Q ss_pred EecCCChhhhcCCCCccEEEeCCC------------hhHHHHHHHhCCCeEeecCccchHHHHHHHHHcCceee
Q psy10599 24 IFDSFVHFSSSAHPKCRLFITHGG------------VHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLM 85 (112)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~I~hgG------------~~t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~ 85 (112)
+.+++...+.+ ..+|++||-=| .+-..-+-.+++|+|.+.=.-+ .+...+.+.|+..+
T Consensus 272 v~~~~~l~~~l--~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~--~~~~~~~~~g~~av 341 (381)
T PRK10342 272 VTTALNLEEHI--HDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLT--DDVGVVHQHGIDAV 341 (381)
T ss_pred HHHhcCHHHHh--ccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecccC--CChHHHHhcCceEE
Confidence 44566777777 78999999777 3333456678999999843211 11233555565443
No 355
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=24.98 E-value=92 Score=20.14 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred cEEEeCCChhHHHH--------HHHhCCCeEeecCccc
Q psy10599 40 RLFITHGGVHSAFE--------SIYHAVPMVIVPLFAD 69 (112)
Q Consensus 40 ~~~I~hgG~~t~~e--------a~~~g~P~i~vP~~~d 69 (112)
.+++|..+.+...+ |.-.|+|++++|-..|
T Consensus 30 ~lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~dL~D 67 (147)
T COG4080 30 RLVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFPDLDD 67 (147)
T ss_pred EEEEEecccHhhhhccHHHHHHHHHhCCcEEEehhHHH
Confidence 45677766544443 4678999999986433
No 356
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.95 E-value=2.8e+02 Score=20.22 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=43.3
Q ss_pred eCCChhHHHHHHHhCCCeEeecCcc-------c---------------------hHHH-HHHHHHcCceeeecCCCCCHH
Q psy10599 44 THGGVHSAFESIYHAVPMVIVPLFA-------D---------------------QKQN-GQKAEEEGYGLMVDFDVFDYE 94 (112)
Q Consensus 44 ~hgG~~t~~ea~~~g~P~i~vP~~~-------d---------------------q~~n-a~~~~~~g~g~~l~~~~~~~~ 94 (112)
.++|...+.-|+..+.|++++-... . ...+ ...+...|+..+.........
T Consensus 105 ~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~ 184 (300)
T PRK11864 105 ADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPE 184 (300)
T ss_pred ccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHH
Confidence 5888888999999999999986521 1 1222 334456777666554456788
Q ss_pred HHHHHHHHHhc
Q psy10599 95 ELRRKVHQVLY 105 (112)
Q Consensus 95 ~l~~~l~~~l~ 105 (112)
++.+++++.++
T Consensus 185 ~~~~~i~~A~~ 195 (300)
T PRK11864 185 DFIRKLKKAKE 195 (300)
T ss_pred HHHHHHHHHHh
Confidence 88888888875
No 357
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.91 E-value=1.1e+02 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.5
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEee
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
.++ ..++++|+.-. |.++=|.+.|+|+|.+
T Consensus 256 ali--~~a~l~Vs~DS-Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 256 ALI--DHARLFIGVDS-VPMHMAAALGTPLVAL 285 (344)
T ss_pred HHH--HhCCEEEecCC-HHHHHHHHcCCCEEEE
Confidence 456 68999999865 6677788999999987
No 358
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=24.89 E-value=65 Score=23.66 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=17.6
Q ss_pred CccEEEeCCChhHHHHHHHhCCCe
Q psy10599 38 KCRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
..-++|+|||...++=+...|.|.
T Consensus 313 ~~vlvVtHg~~ir~ll~~~l~~~~ 336 (372)
T PRK07238 313 ATVLVVSHVTPIKTLLRLALDAGP 336 (372)
T ss_pred CeEEEEEChHHHHHHHHHHhCCCH
Confidence 346799999987776666677654
No 359
>PRK08322 acetolactate synthase; Reviewed
Probab=24.86 E-value=1.1e+02 Score=23.60 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 62 g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 35678888877 456789999999999984
No 360
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=24.69 E-value=1.6e+02 Score=21.61 Aligned_cols=22 Identities=5% Similarity=-0.171 Sum_probs=15.0
Q ss_pred ecCCChhhhcCCCCccEEEeCCCh
Q psy10599 25 FDSFVHFSSSAHPKCRLFITHGGV 48 (112)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~I~hgG~ 48 (112)
..|++..+++ +++|+++-|+..
T Consensus 189 ~~y~~l~ell--~~sDii~l~~Pl 210 (324)
T COG1052 189 ARYVDLDELL--AESDIISLHCPL 210 (324)
T ss_pred ceeccHHHHH--HhCCEEEEeCCC
Confidence 4456666777 678887777764
No 361
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=24.60 E-value=86 Score=19.23 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=11.7
Q ss_pred HHHHhCCCeEeecCcc
Q psy10599 53 ESIYHAVPMVIVPLFA 68 (112)
Q Consensus 53 ea~~~g~P~i~vP~~~ 68 (112)
.++..++|++++|...
T Consensus 105 ~~l~~~~pvvi~P~mn 120 (129)
T PF02441_consen 105 AALKEGKPVVIAPAMN 120 (129)
T ss_dssp HHHHTTCGEEEEEEES
T ss_pred HHccCCCCeEEEEeCC
Confidence 4445599999999743
No 362
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=24.50 E-value=72 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.3
Q ss_pred EEeCCChhHHHHHHHhCCCeEeec
Q psy10599 42 FITHGGVHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 42 ~I~hgG~~t~~ea~~~g~P~i~vP 65 (112)
.|+=.|+..+.+|...|+++..+|
T Consensus 90 ~ISDPG~~LV~~a~~~gi~V~~lP 113 (275)
T COG0313 90 LISDPGYELVRAAREAGIRVVPLP 113 (275)
T ss_pred cccCccHHHHHHHHHcCCcEEecC
Confidence 566777888889999999999887
No 363
>PRK09375 quinolinate synthetase; Provisional
Probab=24.36 E-value=61 Score=23.81 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=39.2
Q ss_pred hhhhhhhccCCCcEEEecCCChhhhcCCCCccEEEeCCChhHHHHHHHhCCCeEeecC
Q psy10599 9 RHFWADCKTTAAVYSIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~ 66 (112)
+++....++.| +..+..|+.+..-.. +-+|+++|-+-+-.+.+++..+..++.+|.
T Consensus 110 ~~i~~lk~~~p-~a~vVaYvNssaeVK-A~aD~~cTSSnAl~iv~~~~~~~~IlF~PD 165 (319)
T PRK09375 110 EEFRAFKEAHP-DATVVTYVNTSAAVK-ARADIVCTSSNAVKIVEALPQGKKILFLPD 165 (319)
T ss_pred HHHHHHHHHCC-CCEEEEEeCCCHHHH-HhCCeEEeCHHHHHHHhccCCCCeEEEeCc
Confidence 33444444555 567888888765443 678999998888888887766777888875
No 364
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=24.33 E-value=1.4e+02 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=26.8
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEee
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
.++.|+..|+++-.||......+...++|++..
T Consensus 181 ~L~~~~~vd~V~fTGs~~v~~~a~~~~~pv~~e 213 (488)
T TIGR02518 181 ELMKNKDTSLILATGGEAMVKAAYSSGTPAIGV 213 (488)
T ss_pred HHHhCCCcCEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 367788999999999988776666678998764
No 365
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.23 E-value=35 Score=18.87 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=18.5
Q ss_pred ccEEEeCCChhHHHHHHHhCCCe
Q psy10599 39 CRLFITHGGVHSAFESIYHAVPM 61 (112)
Q Consensus 39 ~~~~I~hgG~~t~~ea~~~g~P~ 61 (112)
.|.+++.=|..|..||+..|++.
T Consensus 24 ~dhvL~~LGgrT~~eAL~~G~dp 46 (63)
T PF11248_consen 24 RDHVLSELGGRTAAEALEAGVDP 46 (63)
T ss_pred HhcchhhcCCcCHHHHHHcCCCH
Confidence 36677777878999999999873
No 366
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.15 E-value=1e+02 Score=22.18 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=24.3
Q ss_pred hhcCCCCccEEEeCCChhHHHHHHHhCCCeEee
Q psy10599 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
.++ ..|+++|+.-. |.++=|.+.|+|++.+
T Consensus 257 ali--~~a~l~I~nDT-Gp~HlAaA~g~P~val 286 (348)
T PRK10916 257 ILI--AACKAIVTNDS-GLMHVAAALNRPLVAL 286 (348)
T ss_pred HHH--HhCCEEEecCC-hHHHHHHHhCCCEEEE
Confidence 456 68999999775 5677788999999886
No 367
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=24.15 E-value=75 Score=22.49 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.7
Q ss_pred hhHHHHHHHhCCCeEeecC
Q psy10599 48 VHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 48 ~~t~~ea~~~g~P~i~vP~ 66 (112)
.+...|+...|+|.|.+..
T Consensus 110 VgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 110 VSGALEGAMMGVPSIAISS 128 (253)
T ss_pred HHHHHHHHhcCCCeEEEEc
Confidence 5778899999999999975
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=24.03 E-value=2.3e+02 Score=19.02 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCeEeecCccchHHHHHHHHHcCceee-ecCCCCCHHHHHHHHHHHhcC
Q psy10599 50 SAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLM-VDFDVFDYEELRRKVHQVLYE 106 (112)
Q Consensus 50 t~~ea~~~g~P~i~vP~~~dq~~na~~~~~~g~g~~-l~~~~~~~~~l~~~l~~~l~~ 106 (112)
.+-|.+..++|+|.+-+........+.+.+.|.-++ +++. +...+...+..+|.+
T Consensus 122 ~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~--NR~~i~~~Il~~L~~ 177 (179)
T COG1618 122 AVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPE--NRNRILNEILSVLKG 177 (179)
T ss_pred HHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccc--hhhHHHHHHHHHhcc
Confidence 455677899998887554555666777788777777 6543 455676666666654
No 369
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=23.99 E-value=1.2e+02 Score=23.78 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGGVH------SAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~------t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.|-| .+.+|...++|+|++.
T Consensus 77 g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 77 GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3567888887743 5779999999999984
No 370
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=23.85 E-value=1.2e+02 Score=23.59 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 67 g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 67 GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 35567777776 456689999999999984
No 371
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=23.80 E-value=1.2e+02 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.8
Q ss_pred cCCCCccEEEeCCChhHHHHHH--H--------hCCCeEeecC
Q psy10599 34 SAHPKCRLFITHGGVHSAFESI--Y--------HAVPMVIVPL 66 (112)
Q Consensus 34 l~~~~~~~~I~hgG~~t~~ea~--~--------~g~P~i~vP~ 66 (112)
|.....|.+|.=||-+|..-+. . .++|+|.+|-
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPk 516 (745)
T TIGR02478 474 FQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPA 516 (745)
T ss_pred HHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecc
Confidence 3345789999999998886553 2 5799999996
No 372
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=23.72 E-value=80 Score=19.48 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=15.7
Q ss_pred CccEEEeCCChhHHHHHHHhCCC
Q psy10599 38 KCRLFITHGGVHSAFESIYHAVP 60 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea~~~g~P 60 (112)
..-++|+|||.....=....|.|
T Consensus 100 ~~iliV~H~~~i~~~~~~l~~~~ 122 (153)
T cd07067 100 KNVLIVSHGGVLRALLAYLLGLS 122 (153)
T ss_pred CeEEEEeChHHHHHHHHHHhCCC
Confidence 45689999997666555555554
No 373
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=23.49 E-value=1.1e+02 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGGVH------SAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~~------t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.|-| .+.+|...++|+|++.
T Consensus 72 g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~ 106 (530)
T PRK07092 72 GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITA 106 (530)
T ss_pred CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 3567788887744 7789999999999983
No 374
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=23.44 E-value=1.3e+02 Score=23.41 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..+++++.| .+.+.+|...++|+|++.
T Consensus 62 g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 62 GKVGVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 35677888877 456779999999999994
No 375
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=23.41 E-value=99 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=19.7
Q ss_pred CccEEEeCCChhHHHHH-------HHhCCCeEeecCc
Q psy10599 38 KCRLFITHGGVHSAFES-------IYHAVPMVIVPLF 67 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea-------~~~g~P~i~vP~~ 67 (112)
+.|++|.=||. ++.++ ..-|+|.|.+|..
T Consensus 111 r~d~IIaiGGG-sv~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 111 RHSYVLAIGGG-AVLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred CCceEEEeCCc-HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34599998884 34333 1238999999975
No 376
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=23.17 E-value=1.9e+02 Score=18.73 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCceeeecCCCCCHHHHHHHHHHHhcCcc
Q psy10599 71 KQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPK 108 (112)
Q Consensus 71 ~~na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~~~~ 108 (112)
..|..+-++.|.-.++...+.+.+++...+.+-|.|+.
T Consensus 101 ~lN~~Y~~kFGf~Fvi~~~g~s~~~Il~~l~~Rl~n~~ 138 (159)
T PF09349_consen 101 ALNQAYEEKFGFPFVICARGRSAAEILAALERRLNNDP 138 (159)
T ss_dssp HHHHHHHHHHSS-----GTT--HHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHcCCceEeecCCCCHHHHHHHHHHHhcCCH
Confidence 56888888888888887777788888888887776653
No 377
>KOG3446|consensus
Probab=23.15 E-value=1.2e+02 Score=17.89 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=31.4
Q ss_pred CCCeEeecCccchHH-HHHHHHHcCceeeecCCCCCHHHHHHHHHHHhc
Q psy10599 58 AVPMVIVPLFADQKQ-NGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLY 105 (112)
Q Consensus 58 g~P~i~vP~~~dq~~-na~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l~ 105 (112)
..|+++=-..+-|+. +|++ ..|.-..+..++++.+++..+|..+..
T Consensus 49 ~lPILIREcSgVqPrl~ARY--~~G~E~~v~L~~~s~~~i~kale~l~k 95 (97)
T KOG3446|consen 49 DLPILIRECSGVQPRLWARY--GNGVERSVSLANLSAPQIHKALENLGK 95 (97)
T ss_pred CCcEeehhhcCCchHHHHHh--cCCceEEeehhhcchHHHHHHHHHHhc
Confidence 456666555565654 3332 346666777888999999999998864
No 378
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=23.13 E-value=3.4e+02 Score=20.55 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=39.6
Q ss_pred CccEEE-eCCCh---hHHHHHHHhCCCeEee-cCc--cchHHHHHHHHHcCceeeecCC-CCC-HHHHHHHHHHHhc
Q psy10599 38 KCRLFI-THGGV---HSAFESIYHAVPMVIV-PLF--ADQKQNGQKAEEEGYGLMVDFD-VFD-YEELRRKVHQVLY 105 (112)
Q Consensus 38 ~~~~~I-~hgG~---~t~~ea~~~g~P~i~v-P~~--~dq~~na~~~~~~g~g~~l~~~-~~~-~~~l~~~l~~~l~ 105 (112)
+..+++ +-+|. .+-+-|..+|.+..++ |.. .-|..|..+++.+|+-++.-.. .-+ .+.+.++++....
T Consensus 106 k~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~ 182 (397)
T PRK04346 106 KKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVT 182 (397)
T ss_pred CCeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334556 33343 3333455678888775 753 3367899999999998886432 112 2234555555443
No 379
>PRK05858 hypothetical protein; Provisional
Probab=23.13 E-value=1.3e+02 Score=23.34 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..+++.|.| .+.+.+|...++|+|++.
T Consensus 66 g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 66 RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 35567777776 456789999999999984
No 380
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=23.12 E-value=2.4e+02 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=13.2
Q ss_pred HHHhCCCeEeecCccchHHHH
Q psy10599 54 SIYHAVPMVIVPLFADQKQNG 74 (112)
Q Consensus 54 a~~~g~P~i~vP~~~dq~~na 74 (112)
|-++|+|++++ .+|+..-.
T Consensus 143 Ag~~gVPV~lV--sGDd~~~~ 161 (266)
T cd08663 143 AGEYGVPVVLV--TGDDAACA 161 (266)
T ss_pred HhhcCCCEEEE--ecCHHHHH
Confidence 45779999999 46655543
No 381
>PRK05637 anthranilate synthase component II; Provisional
Probab=23.10 E-value=2.5e+02 Score=19.00 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=34.7
Q ss_pred ccCCCcEEEecC-CChhhhcCCCCccEEEeCCChhHHHHH------H---HhCCCeEeecCccchHHHHH
Q psy10599 16 KTTAAVYSIFDS-FVHFSSSAHPKCRLFITHGGVHSAFES------I---YHAVPMVIVPLFADQKQNGQ 75 (112)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~I~hgG~~t~~ea------~---~~g~P~i~vP~~~dq~~na~ 75 (112)
++..-.+.+..+ .+..++.. .+.|.+|--||-++..++ + ..++|++.+.+ +.|..+..
T Consensus 22 ~~~g~~~~v~~~~~~~~~l~~-~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGICl-G~Qlla~a 89 (208)
T PRK05637 22 AVAGYKCTVFRNTVPVEEILA-ANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICL-GFQALLEH 89 (208)
T ss_pred HHCCCcEEEEeCCCCHHHHHh-cCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcH-HHHHHHHH
Confidence 344445666665 33344332 355788888887777654 1 12699999875 55655443
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=23.09 E-value=53 Score=16.75 Aligned_cols=18 Identities=6% Similarity=-0.132 Sum_probs=15.3
Q ss_pred cCCCcEEEecCCChhhhc
Q psy10599 17 TTAAVYSIFDSFVHFSSS 34 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l 34 (112)
.++..+....|-|.++++
T Consensus 9 ~l~~~v~~~~w~P~mdLi 26 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLI 26 (47)
T ss_pred CCCCcEEEEEECCCCCEE
Confidence 456778999999999987
No 383
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.92 E-value=70 Score=23.01 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCC-eEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESIY----HAVP-MVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~----~g~P-~i~vP~ 66 (112)
...|.+|.-||=||+.|++. .+.| +=++|.
T Consensus 57 ~~~D~via~GGDGTv~evingl~~~~~~~LgilP~ 91 (301)
T COG1597 57 EGYDTVIAAGGDGTVNEVANGLAGTDDPPLGILPG 91 (301)
T ss_pred cCCCEEEEecCcchHHHHHHHHhcCCCCceEEecC
Confidence 47899999999999998863 3555 556786
No 384
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=22.80 E-value=1.3e+02 Score=23.50 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=22.1
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..++++|.| .+.+.+|...++|+|++.
T Consensus 72 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 105 (569)
T PRK09259 72 KPGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 105 (569)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEE
Confidence 5677888766 356779999999999984
No 385
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.64 E-value=1.1e+02 Score=21.44 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=22.0
Q ss_pred hhcCCCCccEEEeCCChhH-----HHHHHHhCCCeEee
Q psy10599 32 SSSAHPKCRLFITHGGVHS-----AFESIYHAVPMVIV 64 (112)
Q Consensus 32 ~~l~~~~~~~~I~hgG~~t-----~~ea~~~g~P~i~v 64 (112)
.++.+-++|++||+-..++ +.-|...|+|+|++
T Consensus 188 al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 188 ALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 4555568888888744332 23456778888888
No 386
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.41 E-value=1.3e+02 Score=23.61 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCccEEEeCCCh------hHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGGV------HSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~------~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.|- +.+.+|...++|+|++.
T Consensus 66 g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 66 GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 456788888773 45779999999999983
No 387
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=22.39 E-value=2.2e+02 Score=20.89 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred CccE--EEeCCChhHHHHHHHhCCCeEee
Q psy10599 38 KCRL--FITHGGVHSAFESIYHAVPMVIV 64 (112)
Q Consensus 38 ~~~~--~I~hgG~~t~~ea~~~g~P~i~v 64 (112)
..++ ..+|||.|.....+..|.|.=++
T Consensus 57 g~~v~i~~s~ggSg~~~~qi~~G~~ADV~ 85 (338)
T PRK10852 57 GDKLTIKQSHAGSSKQALAILQGLKADVV 85 (338)
T ss_pred CCceEEEEcCCCcHHHHHHHhcCCCcCEE
Confidence 4555 67999999999999999998776
No 388
>PRK04155 chaperone protein HchA; Provisional
Probab=22.37 E-value=69 Score=23.01 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=12.8
Q ss_pred CccEEEeCCChhHHHHH------HHhCCCeEeecC
Q psy10599 38 KCRLFITHGGVHSAFES------IYHAVPMVIVPL 66 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea------~~~g~P~i~vP~ 66 (112)
+.-+.||||.+.-+.-. +..|+-+-.+|.
T Consensus 181 K~VaAICHGPa~Ll~a~~~~g~~ll~GkkvT~fp~ 215 (287)
T PRK04155 181 RFIITLCHGPAALLAAGVDHGDNPLNGYSICAFPD 215 (287)
T ss_pred CEEEEEChHHHHHHHcCCcCCCcccCCCEEeeCCC
Confidence 33345555554333222 344455545554
No 389
>PRK05670 anthranilate synthase component II; Provisional
Probab=22.26 E-value=2.2e+02 Score=18.66 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=31.2
Q ss_pred CCCcEEEecCC-ChhhhcCCCCccEEEeCCChhHHH---------HHHHhCCCeEeecCccchHHHHH
Q psy10599 18 TAAVYSIFDSF-VHFSSSAHPKCRLFITHGGVHSAF---------ESIYHAVPMVIVPLFADQKQNGQ 75 (112)
Q Consensus 18 ~~~~~~~~~~~-~~~~~l~~~~~~~~I~hgG~~t~~---------ea~~~g~P~i~vP~~~dq~~na~ 75 (112)
..-.+.+..+. +....+..-..|.+|--||-++.. +.+..++|++.+.+ +.|..+..
T Consensus 22 ~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl-G~Qlla~a 88 (189)
T PRK05670 22 LGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL-GHQAIGEA 88 (189)
T ss_pred CCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH-HHHHHHHH
Confidence 33456666664 222222112356677777765543 33456789999875 66655544
No 390
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.25 E-value=90 Score=17.40 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=17.8
Q ss_pred CccEEEeCCCh----hHHHHH--HHhCCCeEeecC
Q psy10599 38 KCRLFITHGGV----HSAFES--IYHAVPMVIVPL 66 (112)
Q Consensus 38 ~~~~~I~hgG~----~t~~ea--~~~g~P~i~vP~ 66 (112)
.-+.+|-|||. ..+.+. -..|+|++.+|-
T Consensus 31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 35677888887 223332 245888887764
No 391
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.19 E-value=1.9e+02 Score=20.08 Aligned_cols=50 Identities=28% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCccEEEe---CCChhH-HHHHHH-hCCCeEeecCc-cc---hHHHHHHHHHcCceeee
Q psy10599 37 PKCRLFIT---HGGVHS-AFESIY-HAVPMVIVPLF-AD---QKQNGQKAEEEGYGLMV 86 (112)
Q Consensus 37 ~~~~~~I~---hgG~~t-~~ea~~-~g~P~i~vP~~-~d---q~~na~~~~~~g~g~~l 86 (112)
+.+|++|+ |+-.+. +.+-+. .|+..|++|.+ .. ...-...+++.|+-+..
T Consensus 50 ~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~ 108 (217)
T PF02593_consen 50 PEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEF 108 (217)
T ss_pred CCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeec
Confidence 68999998 555432 223333 79999999975 33 22233556777765554
No 392
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=22.09 E-value=1.4e+02 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|.+.++|+|++.
T Consensus 69 g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 69 GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 35677888866 456779999999999983
No 393
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=22.08 E-value=1.4e+02 Score=23.32 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEee
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIV 64 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~v 64 (112)
.+..++++|.| .+.+.+|...++|+|++
T Consensus 70 g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 45778888877 45677999999999998
No 394
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=21.81 E-value=1.4e+02 Score=23.21 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 63 gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 63 GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 35677888877 456779999999999983
No 395
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.72 E-value=1.2e+02 Score=22.35 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=10.2
Q ss_pred CCccEEEeCCCh
Q psy10599 37 PKCRLFITHGGV 48 (112)
Q Consensus 37 ~~~~~~I~hgG~ 48 (112)
.++|++|.=||.
T Consensus 82 ~~~D~IiavGGG 93 (380)
T cd08185 82 EGCDFVVGLGGG 93 (380)
T ss_pred cCCCEEEEeCCc
Confidence 479999999984
No 396
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=21.71 E-value=1.4e+02 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.416 Sum_probs=22.3
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..+++++.| .+.+.+|.+.++|+|++.
T Consensus 73 ~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 73 KLGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 5677888877 345778899999999994
No 397
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=21.62 E-value=1.5e+02 Score=23.19 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..+++++.| .+.+.+|...++|+|++.
T Consensus 75 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 35667777766 356789999999999984
No 398
>PRK14071 6-phosphofructokinase; Provisional
Probab=21.55 E-value=2e+02 Score=21.39 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.6
Q ss_pred CCChhHHHHHHHhCCCeEeecC
Q psy10599 45 HGGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 45 hgG~~t~~ea~~~g~P~i~vP~ 66 (112)
|+|+-++.-+++.|.-.+++|-
T Consensus 187 ~~G~LAl~~~la~ga~~iliPE 208 (360)
T PRK14071 187 DAGHIALAAGIAGGADVILIPE 208 (360)
T ss_pred CccHHHHHhHhhcCCCEEEECC
Confidence 7889999999999999999985
No 399
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.47 E-value=1.4e+02 Score=23.40 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCccEEEeCCCh------hHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGGV------HSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG~------~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.|- +.+.+|...++|+|++.
T Consensus 76 g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 76 GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 356788888773 45678899999999983
No 400
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=21.41 E-value=1.4e+02 Score=21.74 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=22.0
Q ss_pred CccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 38 KCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 38 ~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
++|++|.=||. ++.++ ...|+|+|.+|..
T Consensus 80 ~~d~IIaIGGG-s~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGSG-TINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECCc-HHHHHHHHHHHhcCCCEEEecCc
Confidence 79999999984 44443 3458999999975
No 401
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=21.39 E-value=1.5e+02 Score=23.07 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=22.6
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..++++|.| .+.+.+|...++|+|++.
T Consensus 64 ~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4667888877 456789999999999994
No 402
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.34 E-value=3.5e+02 Score=20.06 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=40.7
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCeEeecCccchHHHH--HHHHHcCceeeecCCCCCHHHHHHHHHHHh
Q psy10599 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNG--QKAEEEGYGLMVDFDVFDYEELRRKVHQVL 104 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~~~g~P~i~vP~~~dq~~na--~~~~~~g~g~~l~~~~~~~~~l~~~l~~~l 104 (112)
.++.+|||-==.|-++ +...|+|-|++|....-..|- .+++.......+. .++.+..++..++
T Consensus 267 ~s~~lViTdRLHghIl-StL~giPhivi~NSygKn~~~y~~Wl~~ipf~~~i~----~~~~v~~~~a~~~ 331 (339)
T COG5039 267 QSAELVITDRLHGHIL-STLTGIPHIVIPNSYGKNENYYQTWLEGIPFCKLIK----DPEKVENAAAVLL 331 (339)
T ss_pred hhceeeeechhHHHHH-HHHhCCCeEEecCcchhhHHHHHHHHhcCCcceeec----CchhhhhHHHHHH
Confidence 5789999988778787 445699999999875544443 2355444444442 3455555555554
No 403
>PRK09982 universal stress protein UspD; Provisional
Probab=21.23 E-value=1.8e+02 Score=17.86 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=14.9
Q ss_pred CCccEEEeCCChhHHHHHH--------HhCCCeEeecC
Q psy10599 37 PKCRLFITHGGVHSAFESI--------YHAVPMVIVPL 66 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea~--------~~g~P~i~vP~ 66 (112)
..+|++|.-.+.+.+...+ ...+|++++|.
T Consensus 102 ~~aDLIVmG~~~~~~~~~~~va~~V~~~s~~pVLvv~~ 139 (142)
T PRK09982 102 EQCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPF 139 (142)
T ss_pred cCCCEEEEeCChhHHHHHHHHHHHHHhcCCCCEEEecC
Confidence 3566655433333333332 33566666664
No 404
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=21.19 E-value=1.5e+02 Score=23.28 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 62 gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~ 96 (575)
T TIGR02720 62 GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALV 96 (575)
T ss_pred CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 45778888877 456779999999999994
No 405
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.10 E-value=2.1e+02 Score=18.90 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=27.9
Q ss_pred CChhhhcCCCCccEEEeCCCh---hHHHHHHHhCCCeEeecCcc
Q psy10599 28 FVHFSSSAHPKCRLFITHGGV---HSAFESIYHAVPMVIVPLFA 68 (112)
Q Consensus 28 ~~~~~~l~~~~~~~~I~hgG~---~t~~ea~~~g~P~i~vP~~~ 68 (112)
.+...++. .+-|++|...+. ....+....|.|++.+....
T Consensus 51 ~~~E~i~~-l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 51 PNLEAILA-LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp B-HHHHHH-T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred ccHHHHHh-CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 34445554 578999987776 77888889999999997643
No 406
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.95 E-value=1.5e+02 Score=23.19 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 66 g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 66 GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 35677888877 456779999999999984
No 407
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=20.89 E-value=2.2e+02 Score=19.35 Aligned_cols=49 Identities=8% Similarity=-0.034 Sum_probs=31.1
Q ss_pred CCccE-EEeCCChhHHHHH----------------HHhCCCeEeecCcc----chHHHHHHHHH-cCceee
Q psy10599 37 PKCRL-FITHGGVHSAFES----------------IYHAVPMVIVPLFA----DQKQNGQKAEE-EGYGLM 85 (112)
Q Consensus 37 ~~~~~-~I~hgG~~t~~ea----------------~~~g~P~i~vP~~~----dq~~na~~~~~-~g~g~~ 85 (112)
.++|+ +|..+-+||+.-. +..++|++++|-.. +...|...+.+ .|.-++
T Consensus 83 ~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~~ni~~L~~~~g~~~i 153 (196)
T PRK08305 83 KLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNAKNLGRLLNTKNIYFV 153 (196)
T ss_pred cccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCHHHHHHHHhcCCEEEE
Confidence 34555 6777777776522 22479999999742 33588888875 555443
No 408
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=20.87 E-value=2.7e+02 Score=19.75 Aligned_cols=50 Identities=18% Similarity=0.044 Sum_probs=32.1
Q ss_pred CccEEEeCCC--hhHH----HHHHHhCCCeEee-cCccchHHHHHHHHHcCceeeec
Q psy10599 38 KCRLFITHGG--VHSA----FESIYHAVPMVIV-PLFADQKQNGQKAEEEGYGLMVD 87 (112)
Q Consensus 38 ~~~~~I~hgG--~~t~----~ea~~~g~P~i~v-P~~~dq~~na~~~~~~g~g~~l~ 87 (112)
.++.+|+.|| .|.. +-+...|.|.+++ |....+..|...+..+|+-+++-
T Consensus 55 g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v 111 (311)
T TIGR01275 55 GADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVY 111 (311)
T ss_pred CCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEE
Confidence 4567899875 3332 2344679998776 76443455666678889887654
No 409
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=20.69 E-value=1.4e+02 Score=26.36 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=27.4
Q ss_pred hcCCCCccEEEeCCChhHHHHHHH--------------hCCCeEeecCc
Q psy10599 33 SSAHPKCRLFITHGGVHSAFESIY--------------HAVPMVIVPLF 67 (112)
Q Consensus 33 ~l~~~~~~~~I~hgG~~t~~ea~~--------------~g~P~i~vP~~ 67 (112)
.+.....|.+|.=||-+|..-|.. .|+|+|.||..
T Consensus 795 ~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkT 843 (1328)
T PTZ00468 795 LLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVC 843 (1328)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCcc
Confidence 344468899999999888776643 38999999974
No 410
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.66 E-value=1.5e+02 Score=23.39 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 73 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~ 107 (595)
T PRK09107 73 GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCIT 107 (595)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEE
Confidence 35677888877 456778999999999984
No 411
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=20.65 E-value=2.8e+02 Score=19.87 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=13.1
Q ss_pred HHHhCCCeEeecCccchHHHH
Q psy10599 54 SIYHAVPMVIVPLFADQKQNG 74 (112)
Q Consensus 54 a~~~g~P~i~vP~~~dq~~na 74 (112)
|-++|+|++++ .+|+..-.
T Consensus 142 Ag~~gVPV~lv--sGDd~~~~ 160 (265)
T cd00281 142 AGYYGVPVVMV--AGDAEVCK 160 (265)
T ss_pred HhhcCCCEEEE--ecCHHHHH
Confidence 44779999998 46655543
No 412
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.65 E-value=3.3e+02 Score=19.46 Aligned_cols=7 Identities=0% Similarity=0.387 Sum_probs=3.5
Q ss_pred CCCeEee
Q psy10599 58 AVPMVIV 64 (112)
Q Consensus 58 g~P~i~v 64 (112)
|.|+.++
T Consensus 156 ~~~~~~v 162 (308)
T PRK06553 156 GLDVTVL 162 (308)
T ss_pred CCceEEE
Confidence 5555444
No 413
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.41 E-value=2.4e+02 Score=19.60 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCccEEEeCCC--hhHHHHHHHhCCCeEeecCc
Q psy10599 37 PKCRLFITHGG--VHSAFESIYHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG--~~t~~ea~~~g~P~i~vP~~ 67 (112)
-+=|++|...+ ...+.+....|.|++.+|..
T Consensus 114 lkPDlIi~~~~~~~~~~~~~~~~~~pvv~~~~~ 146 (319)
T COG0614 114 LKPDLIIASSSSQDDLIYKLLSLGAPVVVVDYG 146 (319)
T ss_pred cCCCEEEEecccchhHHHHHHhcCCCEEEECCc
Confidence 57899999886 55678889999999999876
No 414
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.40 E-value=1.5e+02 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 83 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 83 GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVIS 117 (587)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 35667888877 456778999999999994
No 415
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=20.39 E-value=1.2e+02 Score=21.55 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.6
Q ss_pred CChhHHHHHHHhCCCeEeecC
Q psy10599 46 GGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 46 gG~~t~~ea~~~g~P~i~vP~ 66 (112)
|-.+...|+...|+|.|.+..
T Consensus 113 GTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 113 GTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred hhHHHHHHHHHcCCCeEEEEc
Confidence 335778899999999999976
No 416
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=20.36 E-value=51 Score=18.21 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=15.3
Q ss_pred CChhhhcCCCCccEEEeCCChh
Q psy10599 28 FVHFSSSAHPKCRLFITHGGVH 49 (112)
Q Consensus 28 ~~~~~~l~~~~~~~~I~hgG~~ 49 (112)
.|..-+|....-.++|++.|.|
T Consensus 25 ~P~~n~LsNg~y~~mvt~~G~G 46 (66)
T PF06204_consen 25 APWVNVLSNGSYGVMVTNSGSG 46 (66)
T ss_dssp S--EEEE-SSSEEEEEETTSBE
T ss_pred CCEEEEeeCCcEEEEEcCCCce
Confidence 4556678778889999999875
No 417
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=20.33 E-value=1.4e+02 Score=23.21 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=21.8
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..+++++.| .+.+.+|...++|+|++.
T Consensus 72 ~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 72 RPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred CCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 4556777777 456779999999999994
No 418
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=20.31 E-value=1.7e+02 Score=21.87 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCccEEEeCCChhHHH----HHHHhCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAF----ESIYHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~----ea~~~g~P~i~vP~~ 67 (112)
..+|++|-=||.-++= -|-..|+|+|.+|..
T Consensus 83 ~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT~ 117 (360)
T COG0371 83 DGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPTI 117 (360)
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecCc
Confidence 4589999999954331 234679999999973
No 419
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=20.26 E-value=1.5e+02 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=22.8
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 67 g~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 67 GRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 35677888877 456678889999999995
No 420
>PRK11269 glyoxylate carboligase; Provisional
Probab=20.21 E-value=1.6e+02 Score=23.22 Aligned_cols=28 Identities=11% Similarity=0.386 Sum_probs=22.2
Q ss_pred CccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 38 KCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 38 ~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
+..+++++.| .+.+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 68 NIGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4566666666 678889999999999984
No 421
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=20.21 E-value=1.2e+02 Score=21.30 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=17.6
Q ss_pred CChhHHHHHHHhCCCeEeecC
Q psy10599 46 GGVHSAFESIYHAVPMVIVPL 66 (112)
Q Consensus 46 gG~~t~~ea~~~g~P~i~vP~ 66 (112)
|-.+..+|+...|+|.|.+..
T Consensus 108 GTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 108 GTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred hhHHHHHHHHHcCCCeEEEEe
Confidence 335778899999999999975
No 422
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.07 E-value=1.6e+02 Score=23.14 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=22.8
Q ss_pred CCccEEEeCCC------hhHHHHHHHhCCCeEeec
Q psy10599 37 PKCRLFITHGG------VHSAFESIYHAVPMVIVP 65 (112)
Q Consensus 37 ~~~~~~I~hgG------~~t~~ea~~~g~P~i~vP 65 (112)
.+..++++|.| .+.+.+|...++|+|++.
T Consensus 66 g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 66 GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 35778888877 345779999999999984
No 423
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=20.04 E-value=1.6e+02 Score=21.39 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCeEeecCc
Q psy10599 37 PKCRLFITHGGVHSAFES-----IYHAVPMVIVPLF 67 (112)
Q Consensus 37 ~~~~~~I~hgG~~t~~ea-----~~~g~P~i~vP~~ 67 (112)
..+|++|.=||. ++.+. ...|+|+|.+|..
T Consensus 77 ~~~d~iIaiGGG-s~~D~aK~~a~~~~~p~i~iPTT 111 (339)
T cd08173 77 IGADFVIGVGGG-RVIDVAKVAAYKLGIPFISVPTA 111 (339)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHhcCCCEEEecCc
Confidence 478999999983 33333 3458999999964
Done!