RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10599
(112 letters)
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 74.3 bits (183), Expect = 6e-17
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
P+C + HGG + ++ VP ++VP F DQ + E G G +D E L
Sbjct: 303 PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERL 362
Query: 97 RRKVHQVLYEP 107
+ ++L P
Sbjct: 363 AAALRRLLDPP 373
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 72.4 bits (178), Expect = 3e-16
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95
HPK R F+TH G + +E+I H VPMV +PLF DQ N + E +G + ++ E+
Sbjct: 339 HPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSED 398
Query: 96 LRRKVHQVLYEPKYVGN 112
L + V+ +P Y N
Sbjct: 399 LLNALKTVINDPSYKEN 415
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 68.6 bits (168), Expect = 6e-15
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
P+ I HGG + E++Y VP+V++P ADQ N ++ EE G G+ + F+ E L
Sbjct: 299 PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERL 358
Query: 97 RRKVHQVLYEPKY 109
R V++VL + Y
Sbjct: 359 RAAVNEVLADDSY 371
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 68.2 bits (167), Expect = 9e-15
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
K FITHGG++S E++++ VPMV VP ADQ ++ E G G + + E+L
Sbjct: 290 KKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKL 349
Query: 97 RRKVHQVLYEPKY 109
R V VL +P+Y
Sbjct: 350 REAVLAVLSDPRY 362
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 59.2 bits (144), Expect = 1e-11
Identities = 28/77 (36%), Positives = 37/77 (48%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95
H + F+T GGV S E+I VPMV +P+ DQ N K E G G +D +
Sbjct: 362 HKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQ 421
Query: 96 LRRKVHQVLYEPKYVGN 112
L + V+ PKY N
Sbjct: 422 LVLAIVDVIENPKYRKN 438
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 47.7 bits (114), Expect = 2e-07
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQN 73
AH F+TH G +S ES++H VPM PL+A+Q N
Sbjct: 354 AHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 44.4 bits (105), Expect = 2e-06
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVD 87
A P F+TH G +S ES++ VPM PL+A+QK N + EE GL V+
Sbjct: 357 AKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEE-LGLAVE 408
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 43.1 bits (102), Expect = 5e-06
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 80
H F TH G +S E+++ VPM+ PLF DQ N + E+
Sbjct: 339 HSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVED 383
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 40.7 bits (95), Expect = 4e-05
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 80
AH F+TH G S ES+ VPM+ PLFA+Q N +E
Sbjct: 353 AHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDE 398
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 37.9 bits (88), Expect = 4e-04
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 70
+HP F+TH G +S E I VPM+ PLFA+Q
Sbjct: 359 SHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQ 394
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 37.3 bits (87), Expect = 5e-04
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 41 LFITHGGVHSAFESIYHAVPMVIVPL----FADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
L I+ G + E + P ++VP Q N + + G L++ E+L
Sbjct: 75 LVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKL 134
Query: 97 RRKVHQVLYEPKY 109
+ ++L +P
Sbjct: 135 VEALLKLLLKPLR 147
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 37.7 bits (87), Expect = 5e-04
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV---- 90
+HP F++H G S +ES+ +V+VP DQ N + +E L V +V
Sbjct: 332 SHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE---LKVSVEVAREE 388
Query: 91 ---FDYEELRRKVHQVLYEPKYVGN 112
F E LR ++ V+ +GN
Sbjct: 389 TGWFSKESLRDAINSVMKRDSEIGN 413
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 37.3 bits (86), Expect = 7e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEE 79
H F+TH G S+ ES+ VP+V P+++DQ N + EE
Sbjct: 343 HRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEE 386
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 37.3 bits (86), Expect = 7e-04
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAE 78
+HP F +H G +S ESI VPM+ P +DQK N + E
Sbjct: 339 SHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLE 382
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 36.9 bits (86), Expect = 7e-04
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 39 CRLFITHGGVHSAFESIYHAVPMVIVPLFA--DQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
C I + G E++Y P+++VPL +Q N E GYG+++D + D L
Sbjct: 250 CSAVICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
Query: 97 RR 98
RR
Sbjct: 310 RR 311
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 36.2 bits (83), Expect = 0.002
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 42 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE 80
F++H G S ES+ VP+V PL+A+Q N EE
Sbjct: 357 FLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE 395
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 42 FITHGGVHSAFESIYHAVPMVIVPLFADQKQN 73
F+TH G +S E++ VPMV PL+A+Q+ N
Sbjct: 356 FVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 35.4 bits (82), Expect = 0.003
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 41 LFITHGGVHSAFESIYHAVPMVIVPL----FADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
L I+ G + E + VP ++VP Q+ N + E+ G L++ E+L
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 97 RRKVHQVLYEP 107
+ ++L P
Sbjct: 315 AELILRLLSNP 325
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNG 74
AH F++H G +S ES++ VP+V P++A+Q+ N
Sbjct: 347 AHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNA 386
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 34.8 bits (80), Expect = 0.005
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 70
+H F+TH G +S E + VPM+ P+ ADQ
Sbjct: 358 SHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQ 393
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 34.4 bits (79), Expect = 0.006
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 70
AHP F+TH G +S E++ VP+V P + DQ
Sbjct: 352 AHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQ 387
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 33.6 bits (77), Expect = 0.010
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNG-QKAEEEGYGLMVDFD-VFD 92
AH F++H G +S ES++ VP+ P++A+Q+ N +E G + + D V
Sbjct: 355 AHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSA 414
Query: 93 YEEL 96
Y E+
Sbjct: 415 YGEI 418
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 33.9 bits (77), Expect = 0.010
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 42 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ 75
F+TH G +S E + VPMV +P + DQ N +
Sbjct: 339 FMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK 372
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 33.5 bits (76), Expect = 0.012
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDV---- 90
+HP F+ H G S +ES+ +V +P ADQ + EE L V V
Sbjct: 327 SHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE---LEVSVKVQRED 383
Query: 91 ---FDYEELRRKVHQVLYEPKYVGN 112
F E LR V V+ + +GN
Sbjct: 384 SGWFSKESLRDTVKSVMDKDSEIGN 408
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 32.7 bits (74), Expect = 0.025
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQ-KAEEEGYGLMVDFDVFD- 92
+H F+TH G +S E++ VP+V P + DQ + + + G G+ + D D
Sbjct: 339 SHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDG 398
Query: 93 ---YEELRRKVHQVLYEPKYVG 111
EE+ R + V P
Sbjct: 399 ELKVEEVERCIEAVTEGPAAAD 420
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 32.2 bits (73), Expect = 0.035
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 39 CRLFITHGGVHSAFESIYHAVPMVIVPLFA--DQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
L ITHGG E++ P++++P +Q N K E+ G G+ +++ E
Sbjct: 248 AELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELRLLEA 307
Query: 97 ---RRKVHQVLYE 106
R + +
Sbjct: 308 ILDIRNMKRYKRN 320
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 31.7 bits (73), Expect = 0.052
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 52 FESIYHAVPMVIVPL-FA---DQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEP 107
E +P +++PL +A Q N + + G +++ + E L + ++L +P
Sbjct: 266 AELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325
Query: 108 KY 109
+
Sbjct: 326 ER 327
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 31.0 bits (70), Expect = 0.11
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 42 FITHGGVHSAFESIYHAVPMVIVPLFADQKQN 73
F+TH G +S E + +PMV P+ A+Q N
Sbjct: 367 FVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYN 398
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 30.4 bits (69), Expect = 0.14
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 32 SSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVP 65
S + P+C++ I G + M++VP
Sbjct: 165 SGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVP 198
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 30.1 bits (69), Expect = 0.16
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 58 AVPMVIVPL-FA---DQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLYEPK 108
+P ++VPL A Q N + + G L++ E+L K+ ++L +P+
Sbjct: 272 GLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPE 326
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 30.0 bits (67), Expect = 0.19
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQ 70
HP F+ H G + +ES+ MV++P +DQ
Sbjct: 326 DHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQ 361
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 29.9 bits (68), Expect = 0.21
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 41 LFITHGGVHSAFESIYHAVPMVIVPL-FA--DQKQNGQKAEEEGYGLMVDFDVFDYEELR 97
L I+ G + E VP +++P +A DQ N + E+ G GL++ E+L
Sbjct: 253 LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLL 312
Query: 98 RKVHQVLYEPK 108
+ ++L +P
Sbjct: 313 EALLKLLLDPA 323
>gnl|CDD|171505 PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase; Reviewed.
Length = 352
Score = 26.7 bits (59), Expect = 2.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 43 ITHGGVHSAFESIYHAVPMVIVPL--FA---DQKQNGQKAEEEGY 82
I+ G ++ FE + PM+++PL FA DQ N + E +GY
Sbjct: 257 ISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGY 301
>gnl|CDD|239165 cd02764, MopB_PHLH, The MopB_PHLH CD includes a group of related
uncharacterized putative hydrogenase-like homologs
(PHLH) of molybdopterin binding (MopB) proteins. This CD
is of the PHLH region homologous to the catalytic
molybdopterin-binding subunit of MopB homologs.
Length = 524
Score = 26.7 bits (59), Expect = 3.0
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 1 MSTWITMERHF---WADCKTTAAVYSI 24
+ W+ H W D +T YSI
Sbjct: 427 LCDWVAPMSHGLESWGDAETPDGTYSI 453
>gnl|CDD|118105 pfam09569, RE_ScaI, ScaI restriction endonuclease. This family
includes the ScaI (recognises and cleaves AGT^ACT)
restriction endonuclease.
Length = 191
Score = 25.9 bits (57), Expect = 4.3
Identities = 9/39 (23%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 67 FADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVHQVLY 105
+ + +G+K+++ GY L ++F+ F ++L K+ ++ +
Sbjct: 120 YGYRPDDGKKSKD-GYYLAINFEKFKEDDLEPKIWKIRF 157
>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated.
Length = 390
Score = 26.2 bits (58), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 85 MVDFDVFDYEELRRKVHQVLYEPKYVG 111
+VDFDV D L+R QV++ +VG
Sbjct: 67 IVDFDVVDSSNLQR---QVIHGTSWVG 90
>gnl|CDD|224436 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell
envelope biogenesis, outer membrane].
Length = 419
Score = 25.7 bits (57), Expect = 5.4
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 42 FITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELRRKVH 101
+ GG H+ E P++ P + ++ + G GL V+ D + L + V
Sbjct: 327 LVPIGG-HNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----DADLLAKAVE 381
Query: 102 QVL 104
+L
Sbjct: 382 LLL 384
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational
modification, protein turnover, chaperones].
Length = 578
Score = 25.6 bits (56), Expect = 6.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 32 SSSAHPKCRLFITHGGVHS 50
S HPK L+I ++S
Sbjct: 126 SDHNHPKFSLYIQQEVIYS 144
>gnl|CDD|225549 COG3004, NhaA, Na+/H+ antiporter [Inorganic ion transport and
metabolism].
Length = 390
Score = 25.4 bits (56), Expect = 7.2
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 41 LFI--THGGVHSAFESIYHA----VPMVIVPLFA 68
FI S E + HA V I+PLFA
Sbjct: 238 FFIPLKTKEGESPLERLEHALHPWVAFFILPLFA 271
>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional.
Length = 237
Score = 25.4 bits (56), Expect = 8.2
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 64 VPLFADQKQNGQKAEEE----GYGLMVDFDVFDYEELRRKVHQVLYE 106
V + A ++ ++A E G L + DV D +++R V ++
Sbjct: 33 VAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA 79
>gnl|CDD|234270 TIGR03590, PseG, pseudaminic acid biosynthesis-associated protein
PseG. This protein is found in association with enzymes
involved in the biosynthesis of pseudaminic acid , a
component of polysaccharide in certain Pseudomonas
strains as well as a modification of flagellin in
Campylobacter and Hellicobacter. The role of this
protein is unclear, although it may participate in
N-acetylation in conjunction with, or in the absence of
PseH (TIGR03585) as it often scores above the trusted
cutoff to pfam00583 representing a family of
acetyltransferases.
Length = 279
Score = 25.0 bits (55), Expect = 8.9
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 38 KCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKA 77
+ L I G +++E +P + + L +Q+ N Q+
Sbjct: 241 EADLAIGAAGS-TSWERCCLGLPSLAICLAENQQSNSQQL 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.434
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,826,280
Number of extensions: 486847
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 48
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)