RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10599
(112 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 111 bits (280), Expect = 8e-33
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYE 94
HPK R FITHGG + +E+IYH +PMV +PLFADQ N + G + VDF+
Sbjct: 83 GHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSST 142
Query: 95 ELRRKVHQVLYEPKY 109
+L + +V+ +P Y
Sbjct: 143 DLLNALKRVINDPSY 157
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 95.6 bits (238), Expect = 8e-25
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
+ LF+TH G + E + A PM+ VP DQ N + G + + + L
Sbjct: 298 RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLL 357
Query: 97 RRKVHQVLYEPKY 109
R ++ +P+
Sbjct: 358 RETALALVDDPEV 370
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 91.7 bits (228), Expect = 2e-23
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
K FITH G+ S E++ +AVPMV VP A+Q N ++ E G G + D E+L
Sbjct: 320 TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKL 379
Query: 97 RRKVHQVLYEPKY 109
R V V +P
Sbjct: 380 REAVLAVASDPGV 392
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 85.9 bits (213), Expect = 2e-21
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
+ + +THGG+ + E++Y P+V+VP D + ++ ++ G G ++ + D + L
Sbjct: 312 EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTL 371
Query: 97 RRKVHQVLYEPKY 109
V V +P
Sbjct: 372 LAAVGAVAADPAL 384
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 85.5 bits (212), Expect = 3e-21
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFA-DQKQNGQKAEEEGYGLMVDFDVFDYEE 95
R +THG + E+ VP+V+VP FA + + ++ E G G ++ D +
Sbjct: 296 AHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPAS 355
Query: 96 LRRKVHQVLYEPKY 109
+R V ++ +
Sbjct: 356 IREAVERLAADSAV 369
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 82.0 bits (203), Expect = 6e-20
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
P L + HGG + ++ VP + P D N Q + G G + D + +
Sbjct: 307 PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSV 366
Query: 97 RRKVHQVLYEPKY 109
++L E Y
Sbjct: 367 SGAAKRLLAEESY 379
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 80.2 bits (198), Expect = 3e-19
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
P C + HGG S + H VP VI+P D Q+ +E G G+ + ++L
Sbjct: 334 PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQL 393
Query: 97 RRKVHQVLYEPKY 109
R V +VL +P +
Sbjct: 394 RESVKRVLDDPAH 406
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 78.6 bits (194), Expect = 9e-19
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
P C + + HGG + + VP V VP+ A+ + + G G+ V ++ E +
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 358
Query: 97 RRKVHQVLYEPKY 109
++ + Y
Sbjct: 359 LAACARIRDDSSY 371
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 77.2 bits (190), Expect = 3e-18
Identities = 12/73 (16%), Positives = 28/73 (38%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
P C L + H G S + VP +++P + + ++ + G + + E +
Sbjct: 278 PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAI 337
Query: 97 RRKVHQVLYEPKY 109
++ + Y
Sbjct: 338 ADSCQELQAKDTY 350
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 74.4 bits (183), Expect = 3e-17
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVF--DYE 94
C L I GG +AF + +P +++P + DQ + G G+ + + D+E
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHE 344
Query: 95 ELRRKVHQVLYEPKY 109
+ + VL + +
Sbjct: 345 QFTDSIATVLGDTGF 359
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 66.8 bits (163), Expect = 2e-14
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95
+ + HGG + P V+VP ADQ + + G G+ D E
Sbjct: 282 FGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVES 341
Query: 96 LRRKVHQVLYEPKY 109
L + L P
Sbjct: 342 LSAALATAL-TPGI 354
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 66.4 bits (162), Expect = 2e-14
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
C + HGG + +I +P ++ P DQ Q+ + G+ + +
Sbjct: 298 RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVST--SDKVD 355
Query: 97 RRKVHQVLYEPKY 109
+ +++ +
Sbjct: 356 ADLLRRLIGDESL 368
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 66.4 bits (162), Expect = 2e-14
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 36 HPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEE 95
+ I HGG + + P +++P ADQ + E G G+ D + ++
Sbjct: 299 FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDS 358
Query: 96 LRRKVHQVLYEPKY 109
L + L P+
Sbjct: 359 LSAALATAL-TPET 371
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 64.5 bits (157), Expect = 1e-13
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 37 PKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEEL 96
+ I HG + + VP +++P DQ + G G+ D +E L
Sbjct: 301 RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESL 360
Query: 97 RRKVHQVLYEPKY 109
+ VL P+
Sbjct: 361 SAALTTVL-APET 372
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 55.3 bits (134), Expect = 2e-10
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDY 93
AH F+TH G +S +ES+ VP++ P F DQ+ NG+ E+ G+ ++ VF
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTK 399
Query: 94 EELRRKVHQVL 104
L Q+L
Sbjct: 400 SGLMSCFDQIL 410
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 52.2 bits (126), Expect = 2e-09
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDY 93
H +F+TH G +S E I VPM+ P F DQ N E G+ VD V
Sbjct: 342 KHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTK 401
Query: 94 EELRRKVHQVL 104
E +++ + +
Sbjct: 402 ESIKKALELTM 412
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 51.5 bits (124), Expect = 4e-09
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDY 93
HP F+TH G +S ESI VPM+ P FADQ + + E G+ +D +V
Sbjct: 368 NHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNV-KR 426
Query: 94 EELRRKVHQVLYEPK 108
EEL + +++V+ K
Sbjct: 427 EELAKLINEVIAGDK 441
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 44.5 bits (106), Expect = 9e-07
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 35 AHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEE-GYGLMVDFDVFDY 93
AH F++H G +S ES++ VP++ P++A+Q+ N + +E G GL + D
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406
Query: 94 ------EELRRKVHQV 103
EE+ + + +
Sbjct: 407 SDVVAAEEIEKGLKDL 422
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 42 FITHGGVHSAFESIYHAVPMVIVPLFADQKQN 73
F+TH G +S ES+ +P++ PL+A+QK N
Sbjct: 361 FLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 36.7 bits (84), Expect = 5e-04
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 23 SIFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFA----DQKQNGQKAE 78
FD S L I+H G S +S+ P+++ + Q+Q K
Sbjct: 117 IGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFV 176
Query: 79 EEGYGLMVDFDVFDYEELRRKVHQVLYEP 107
E GY R +P
Sbjct: 177 ELGYVWSCAPTETGLIAGLRASQTEKLKP 205
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 32.8 bits (73), Expect = 0.013
Identities = 5/61 (8%), Positives = 15/61 (24%), Gaps = 1/61 (1%)
Query: 24 IFDSFVHFSSSAHPKCRLFITHGGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYG 83
+ + I E++ + +Q+ ++GY
Sbjct: 211 RLFIDHENIAKLMNESNKLIISASS-LVNEALLLKANFKAICYVKNQESTATWLAKKGYE 269
Query: 84 L 84
+
Sbjct: 270 V 270
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus
stearothermophilus} SCOP: d.142.2.2
Length = 318
Score = 26.7 bits (60), Expect = 1.5
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 26/68 (38%)
Query: 46 GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR---RKVHQ 102
G AF + H VPM + + + F +LR R+V Q
Sbjct: 66 GPPLEAFRKVAHRVPM----------------------MSLA-NAFGEGDLRDFDRRVRQ 102
Query: 103 VLYEPKYV 110
+ E YV
Sbjct: 103 EVGEAAYV 110
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA
replication, magnesium, manganese, metal-binding, NAD,
zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB:
3jsn_A*
Length = 318
Score = 26.7 bits (60), Expect = 1.8
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 26/68 (38%)
Query: 46 GGVHSAFESIYHAVPMVIVPLFADQKQNGQKAEEEGYGLMVDFDVFDYEELR---RKVHQ 102
G ++F + H PM L + + F+ ++LR +++ +
Sbjct: 64 GEAQASFNKVNHDTPM----------------------LSLG-NAFNEDDLRKFDQRIRE 100
Query: 103 VLYEPKYV 110
+ +Y+
Sbjct: 101 QIGNVEYM 108
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase;
HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP:
b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A*
Length = 535
Score = 25.6 bits (56), Expect = 3.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 80 EGYGLMVDFDVFDYEEL 96
G DFD F Y+EL
Sbjct: 519 SGQNNYADFDYFLYKEL 535
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A
{Humicola insolens} PDB: 3zxj_A* 3zxl_A*
Length = 542
Score = 25.7 bits (56), Expect = 3.9
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 80 EGYGLMVDFDVFDYEELRRKVH 101
+ G V F + H
Sbjct: 518 KSLGGEVKVKGFKMNMILEHHH 539
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 25.2 bits (56), Expect = 5.6
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 46 GGVHSAFESIYHAVPM 61
+AF I H VPM
Sbjct: 64 AAPLAAFSQIRHEVPM 79
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold,
adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus
influenzae} PDB: 3pn1_A* 3bac_A*
Length = 322
Score = 25.1 bits (56), Expect = 6.5
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 46 GGVHSAFESIYHAVPM 61
S F I H +PM
Sbjct: 62 AKPLSGFSQIRHEIPM 77
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA
NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB:
3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Length = 332
Score = 24.8 bits (55), Expect = 8.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 46 GGVHSAFESIYHAVPM 61
G V S FE H +PM
Sbjct: 71 GKVLSGFEKAPHDIPM 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.434
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,824,939
Number of extensions: 96457
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 36
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)