BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy106
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 14/202 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLL-------SCITGQNVLNGGNI------HLSI 71
+L + ++V+K S++GASG GK+TLL + G+ L G + LS+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 72 TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKC 130
++LGF+ Q L PE T E + L G ++ KE+ EYL + L L + RK
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGG+Q+RV++A L ++P LL DEPT +D + + + L + E G +I++ TH
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
Query: 191 YIDEAKKSHMIGLMRKGILLEE 212
+ A+ +H M+ G ++ E
Sbjct: 199 ERELAELTHRTLEMKDGKVVGE 220
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 33/234 (14%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I V+N K LD + + ++ + +LG SG GKTT + I G +V + G ++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 69 LS---ITSK---------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+ S +++G + Q +LYP T E I + MS ++I+++ E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 117 LQALLH----LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP------- 165
+ +L LNHF R+ LSGGQQ+RV+LA L+ DP LL+LDEP S +D
Sbjct: 124 VAKILDIHHVLNHFPRE---LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 166 VIAEEIWNHLLYLAESGRTILITTHY-IDEAKKSHMIGLMRKGILLEESPPKVL 218
+ +E+ + L G T+L+ +H D + +G++ KG L++ P+ L
Sbjct: 181 ALVKEVQSRL------GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITS----KKQ 76
+ LD L + V+ + +LG +G GKT L I G +V + G I L +T K
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD 73
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL--LHLNHF-KRKCGSL 133
+ F+ Q SL+P + + L +GM +++IK+ L L + H R +L
Sbjct: 74 IAFVYQNYSLFPHMNVKK-----NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TILITTHYI 192
SGG+Q+RV+LA L+ +P++L+LDEP S +DP E L L + + T+L TH
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 193 DEAK-KSHMIGLMRKGILLEESPPKVLLEK 221
EA+ + I ++ G L++ P+ + EK
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 33/234 (14%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I V+N K LD + + ++ + +LG SG GKTT + I G +V + G ++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 69 LS---ITSK---------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+ S +++G + Q +LYP T E I + MS ++I+++ E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 117 LQALLH----LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP------- 165
+ +L LNHF R+ LSG QQ+RV+LA L+ DP LL+LDEP S +D
Sbjct: 124 VAKILDIHHVLNHFPRE---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 166 VIAEEIWNHLLYLAESGRTILITTHY-IDEAKKSHMIGLMRKGILLEESPPKVL 218
+ +E+ + L G T+L+ +H D + +G++ KG L++ P+ L
Sbjct: 181 ALVKEVQSRL------GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 12/219 (5%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I++EN K+ + L+ + + ++ +LLG SG GK+TLL I G G
Sbjct: 2 VEIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 67 IHLS---ITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
I+ +T + +G + Q +LYP T+ + I + + ++I +K +
Sbjct: 60 IYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAK 119
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+LH++ R LSGGQQ+RV++A L+ +PE+L+LDEP S +D ++ E+ L L
Sbjct: 120 MLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRL 179
Query: 179 -AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPP 215
E G T + TH EA + I ++R+G +L+ P
Sbjct: 180 QKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTP 218
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 116/215 (53%), Gaps = 22/215 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIHLSITS---- 73
VL + + +++ + ++G SG GK+T L C+ G+ +++G N+ T+
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ-IKEKAEY-LQALLHLNHFKRKC- 130
++++G + Q+ +L+P T+ I + M +++ +EKAE LL K K
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNIT----LAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 133
Query: 131 ---GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SLSGGQ +RV++A L +P++++ DEPTS +DP + E+ + + LA G T+++
Sbjct: 134 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 193
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
TH + A++ + M G ++EE P+ L ++
Sbjct: 194 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 116/215 (53%), Gaps = 22/215 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIHLSITS---- 73
VL + + +++ + ++G SG GK+T L C+ G+ +++G N+ T+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ-IKEKAEY-LQALLHLNHFKRKC- 130
++++G + Q+ +L+P T+ I + M +++ +EKAE LL K K
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNIT----LAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 154
Query: 131 ---GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SLSGGQ +RV++A L +P++++ DEPTS +DP + E+ + + LA G T+++
Sbjct: 155 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
TH + A++ + M G ++EE P+ L ++
Sbjct: 215 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 22/239 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---------- 57
A+ V++ KR K +L + +++ I+ L+G +G GKTT L I+
Sbjct: 15 AVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 58 ---GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
G+NV+ + +K + ++P++ Y E + + Y S +I+E
Sbjct: 73 TVFGKNVVEEPH-----EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV 127
Query: 115 EYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
E + L K + + S G R++ +A L+ +P L ILDEPTSG+D + A E+
Sbjct: 128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187
Query: 174 HLLYLAESGRTILITTHYIDEAK-KSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
L ++ G TIL+++H + E + I L+ G ++E + L E+Y +++E+VF
Sbjct: 188 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVF 246
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITSK------- 74
VL+ + +++ I ++GASGCGKTTLL C+ G + G I LS I SK
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-- 131
++LG++ Q+ L+P T+ I Y GL G + ++ + ++A+L L G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAY-GLGNGKG--RTAQERQRIEAMLELTGISELAGRY 135
Query: 132 --SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILIT 188
LSGGQQ+R +LA L DPEL++LDEP S +D + +I ++ L +G++ +
Sbjct: 136 PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV 195
Query: 189 THYIDEA-KKSHMIGLMRKGILLEESPPKVL 218
+H +EA + + I +M++G +L+ + P L
Sbjct: 196 SHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 30/196 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGF-- 79
LD + ++V K + ++G +G GK+TL++ ITG + G ++ IT+K+
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 80 --------MPQQISLYPEFTIDEMICYYGLIYGMSL-------------QQIKEKAEYLQ 118
PQ + E T+ E + + G S +++ EKA +
Sbjct: 82 YGIVRTFQTPQPLK---EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 119 ALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
L L+H + RK G LSGGQ + V + L+ +P+++++DEP +G+ P +A +I+NH+L
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 178 LAESGRTILITTHYID 193
L G T LI H +D
Sbjct: 199 LKAKGITFLIIEHRLD 214
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 36/199 (18%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMP 81
LD + ++V K + ++G +G GK+TL++ ITG + G ++ IT+K+ P
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE-----P 76
Query: 82 QQISLY--------PEFTIDEMICYYGLIYG---------MSL---------QQIKEKAE 115
++ Y P+ + EM L+ G SL +++ EKA
Sbjct: 77 AELYHYGIVRTFQTPQ-PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF 135
Query: 116 YLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ L L+H + RK G LSGGQ + V + L+ +P+++++D+P +G+ P +A +I+NH
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNH 195
Query: 175 LLYLAESGRTILITTHYID 193
+L L G T LI H +D
Sbjct: 196 VLELKAKGITFLIIEHRLD 214
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 30/196 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGF-- 79
LD + ++V K + ++G +G GK+TL++ ITG + G ++ IT+K+
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 80 --------MPQQISLYPEFTIDEMICYYGLIYGMSL-------------QQIKEKAEYLQ 118
PQ + E T+ E + + G S +++ EKA +
Sbjct: 82 YGIVRTFQTPQPLK---EMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 119 ALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
L L+H + RK G LSGGQ + V + L+ +P+++++DEP +G+ P +A +I+NH+L
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 178 LAESGRTILITTHYID 193
L G T LI H +D
Sbjct: 199 LKAKGITFLIIEHRLD 214
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+IRV N K++ K+ V D + V+ +LLG SGCGKTT L + G G I
Sbjct: 3 SIRVVN-LKKYFGKVKAV-DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 68 HLS------ITSK-KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-EYLQA 119
+ I K +++G + Q +LYP T+ E I + +S +++++ E +
Sbjct: 61 YFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK 120
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
LL N RK LSGGQQ+RV+LA L+ P++L+ DEP S +D + + + +L
Sbjct: 121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180
Query: 179 AESGRTILITTHYIDEAKKSHM---IGLMRKGILLEESPP 215
E G T + TH D+A+ M I + +G L++ P
Sbjct: 181 QELGITSVYVTH--DQAEAMTMASRIAVFNQGKLVQYGTP 218
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-------SITSKKQL 77
V + + + + +G SGCGK+TLL I G + G++ + + +++ +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGG 136
G + Q +LYP ++ E + + + G + I ++ + +L L H RK +LSGG
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGG 137
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEA 195
Q++RV++ TL+ +P + +LDEP S +D + ++ + L + GRT++ TH EA
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-------SITSKKQL 77
V + + + + +G SGCGK+TLL I G + G++ + + +++ +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGG 136
G + Q +LYP ++ E + + + G + I ++ + +L L H RK +LSGG
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGG 137
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEA 195
Q++RV++ TL+ +P + +LDEP S +D + ++ + L + GRT++ TH EA
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q L ID + GMS++++ A+ A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMSVEKVIYAAKLAGA 118
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
++ + + LSGGQ++R+++A L+++P++LI DE TS +D +E +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHV 177
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 178 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q L ID + GMS++++ A+ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMSVEKVIYAAKLAGA 124
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
++ + + LSGGQ++R+++A L+++P++LI DE TS +D +E +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHV 183
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q L ID + GMS++++ A+ A
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMSVEKVIYAAKLAGA 120
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
++ + + LSGGQ++R+++A L+++P++LI DE TS +D +E +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHV 179
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-------SITSKKQL 77
V + + + + +G SGCGK+TLL I G + G++ + + +++ +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGG 136
G + Q +LYP ++ E + + + G + I ++ + +L L H RK +LSGG
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGG 137
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEA 195
Q++RV++ TL+ +P + +LD+P S +D + ++ + L + GRT++ TH EA
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N R+ P +LD + +++++ + ++G +G GK+TL I GQ +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q L ID + GMS++++ A+ A
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMSVEKVIYAAKLAGA 120
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
++ + + LSGGQ++R+++A L+++P++LI DE TS +D +E +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHV 179
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q L ID + GMS++++ A+ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMSVEKVIYAAKLAGA 124
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
++ + + LSGGQ++R+++A L+++P++LI D+ TS +D +E +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD-YESEHV 183
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
+++EN KR + ++KL +T++ LLG SGCGKTT L I G G
Sbjct: 10 VEVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 67 IHLSITSKKQLGFMP----------QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I+ + + ++P Q +++P T+ E I + I +I ++ +
Sbjct: 68 IYFG---DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW 124
Query: 117 LQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
LL + R LSGGQ++RV++A ++ +P++L++DEP S +D + + +
Sbjct: 125 AAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 184
Query: 176 LYLAESGR--TILITTHYIDEAKKSHMIGLMRKGILLE-ESPPKVLL 219
L + + TI +T ++ I +M +G LL+ SP +V L
Sbjct: 185 KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
+++EN KR + ++KL +T++ LLG SGCGKTT L I G G
Sbjct: 11 VEVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 68
Query: 67 IHLSITSKKQLGFMP----------QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I+ + + ++P Q +++P T+ E I + I +I ++ +
Sbjct: 69 IYFG---DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW 125
Query: 117 LQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
LL + R LSGGQ++RV++A ++ +P++L++DEP S +D + + +
Sbjct: 126 AAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 185
Query: 176 LYLAESGR--TILITTHYIDEAKKSHMIGLMRKGILLE-ESPPKVLL 219
L + + TI +T ++ I +M +G LL+ SP +V L
Sbjct: 186 KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 32/197 (16%)
Query: 49 KTTLLSCIT-------GQNVLNGGNIHL--------SITSKKQLGFMP-------QQISL 86
K+T L CI G ++NG NI+L + K QL + Q +L
Sbjct: 45 KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104
Query: 87 YPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHFKRKCGS----LSGGQQRRV 141
+ T+ E + + + G+S +E+A L+ L + +R G LSGGQQ+RV
Sbjct: 105 WSHMTVLENVMEAPIQVLGLSKHDARERA--LKYLAKVGIDERAQGKYPVHLSGGQQQRV 162
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK--KSH 199
S+A L +P++L+ DEPTS +DP + E+ + LAE G+T+++ TH + A+ SH
Sbjct: 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSH 222
Query: 200 MIGLMRKGILLEESPPK 216
+I + +G + EE P+
Sbjct: 223 VI-FLHQGKIEEEGDPE 238
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITSKKQLGFMP--- 81
++ + V+ LLG SGCGKTT L I G + G I++ + ++ F+P
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80
Query: 82 -------QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSL 133
Q +LYP T+ + I + + + Q+I ++ + LL L RK L
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH-Y 191
SGGQ++RV+L ++ P++ ++DEP S +D + + L L G T + TH
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200
Query: 192 IDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ I +M +G+L + P + +K
Sbjct: 201 VEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 114/221 (51%), Gaps = 23/221 (10%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I+++N K + ++ Y L + + +++ S++G SG GK+T+L+ I + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 67 IH-------------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQ 109
++ L+ + ++GF+ QQ +L P T E + LI+ MS ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV-ELPLIFKYRGAMSGEE 120
Query: 110 IKEKA-EYLQ-ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+++A E L+ A L K LSGGQQ+RV++A L ++P +++ D+PT +D
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 168 AEEIWNHLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKG 207
E+I L L E G+T+++ TH I+ A+ I ++ G
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 116/230 (50%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q L ID + GMS++++ A+ A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMSVEKVIYAAKLAGA 118
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
++ + + LSGGQ++R+++A L+++P++LI DE TS +D +E +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHV 177
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ GRT++I + K + I +M KG ++E+ K LL +
Sbjct: 178 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 116/230 (50%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q L ID + GMS++++ A+ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMSVEKVIYAAKLAGA 124
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
++ + + LSGGQ++R+++A L+++P++LI DE TS +D +E +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHV 183
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ GRT++I + K + I +M KG ++E+ K LL +
Sbjct: 184 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 115/220 (52%), Gaps = 26/220 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHL--SITSKK 75
+ +++ ++ +L+G SG GK+T+LS + +G L+G +I + +
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHFKRKCGS-- 132
++G + Q+ L+ +I E I Y ++ ++I+ AE A+ + +F + +
Sbjct: 450 KIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 133 ------LSGGQQRRVSLAITLLHDPELLILDEPTSGIDP---VIAEEIWNHLLYLAESGR 183
LSGGQ++R+++A LL +P++L+LDE TS +D + +E + L+ GR
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM----DGR 564
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
T+L+ H++ K ++M+ ++ +G + E + LL K N
Sbjct: 565 TVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPN 604
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 23/221 (10%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
++++N K + ++ Y L + + +++ S++G SG GK+T+L+ I + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 67 IH-------------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQ 109
++ L+ + ++GF+ QQ +L P T E + LI+ MS ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV-ELPLIFKYRGAMSGEE 120
Query: 110 IKEKA-EYLQ-ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+++A E L+ A L K LSGGQQ+RV++A L ++P +++ D+PT +D
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
Query: 168 AEEIWNHLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKG 207
E+I L L E G+T+++ TH I+ A+ I ++ G
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 25/222 (11%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I+++N K + ++ Y L + + +++ S+ G SG GK+T L+ I + G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 67 IH-------------LSITSKKQLGFMPQQISLYPEFTIDEMI------CYYGLIYGMSL 107
++ L+ + ++GF+ QQ +L P T E + Y G G
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE-- 119
Query: 108 QQIKEKAEYLQ-ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
++ K E L+ A L K LSGGQQ+RV++A L ++P +++ DEPT +D
Sbjct: 120 ERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSK 179
Query: 167 IAEEIWNHLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKG 207
E+I L L E G+T+++ TH I+ A+ I ++ G
Sbjct: 180 TGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 95/176 (53%), Gaps = 18/176 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIHLSITS-KKQ 76
VL+++ MT++K + + G +G GKTTLL I+ G+ + NG + IT K +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG----VPITKVKGK 79
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL--LHLNHFKRKCGSLS 134
+ F+P++I + + ++++ + +YG+ + K E + AL + + K+K G LS
Sbjct: 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVN----KNEIMDALESVEVLDLKKKLGELS 135
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
G RRV LA TLL + E+ +LD+P ID ++ +L + + ++I++
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 114/220 (51%), Gaps = 26/220 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHL--SITSKK 75
+ +++ ++ +L+G SG GK+T+LS + +G L+G +I + +
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHFKRKCGS-- 132
++G + Q+ L+ +I E I Y ++ ++I+ AE A+ + +F + +
Sbjct: 419 KIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 133 ------LSGGQQRRVSLAITLLHDPELLILDEPTSGIDP---VIAEEIWNHLLYLAESGR 183
LSGGQ++R+++A LL +P++L+LDE TS +D + +E + L+ GR
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM----DGR 533
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
T+L+ H + K ++M+ ++ +G + E + LL K N
Sbjct: 534 TVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPN 573
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 17/230 (7%)
Query: 1 MDLKDKCAIRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-- 56
+D DK I++ N K ++ L+ + + V IY ++GASG GK+TL+ C+
Sbjct: 17 IDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 57 ----TGQNVLNGGNIHLSIT------SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106
T +VL G +++ +++Q+G + Q +L T+ + +
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 107 LQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165
++K + L +L+ L + +LSGGQ++RV++A L +P++L+ D+ TS +DP
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196
Query: 166 VIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213
I L + G TIL+ TH +D K+ + ++ G L+E+
Sbjct: 197 ATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 108/207 (52%), Gaps = 23/207 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLS-------CITGQNVLNGGNIHL--SITSKK 75
+L L +V+ +L+G SGCGK+T+++ + G+ ++G I ++
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH------LNHFKRK 129
Q+ + Q+ +L+ + +I E I Y +++ Q++E A A +H F+ +
Sbjct: 1154 QIAIVSQEPTLF-DCSIAENIIYGLDPSSVTMAQVEEAARL--ANIHNFIAELPEGFETR 1210
Query: 130 CGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A L+ +P++L+LDE TS +D +E++ L A GRT
Sbjct: 1211 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEKVVQEALDRAREGRTC 1269
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEE 212
++ H ++ + I ++ G ++E+
Sbjct: 1270 IVIAHRLNTVMNADCIAVVSNGTIIEK 1296
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 123/243 (50%), Gaps = 26/243 (10%)
Query: 2 DLKDKCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLS----- 54
D+K K I VEN + + S+ +P +L + + V +L+G+SGCGK+T++S
Sbjct: 409 DMKIKGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467
Query: 55 --CITGQNVLNG---GNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109
+ G+ ++G +I+L +K + + Q+ +L+ TI+E I G++ ++
Sbjct: 468 YDVLKGKITIDGVDVRDINLEFL-RKNVAVVSQEPALF-NCTIEENISLGK--EGITREE 523
Query: 110 IKEKAEYLQALLHL----NHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTS 161
+ + A + N + G LSGGQ++R+++A L+ +P++L+LDE TS
Sbjct: 524 MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 583
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+D +E I L A GRT +I H + + + +I + G ++E + L+ +
Sbjct: 584 ALDAE-SEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ 642
Query: 222 YNM 224
+
Sbjct: 643 QGL 645
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 112/230 (48%), Gaps = 17/230 (7%)
Query: 1 MDLKDKCAIRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-- 56
+D DK I++ N K ++ L+ + + V IY ++GASG GK+TL+ C+
Sbjct: 17 IDDDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 57 ----TGQNVLNGGNIHLSIT------SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106
T +VL G +++ +++Q+G + Q +L T+ + +
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 107 LQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165
++K + L +L+ L + +LSGGQ++RV++A L +P++L+ D+ TS +DP
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196
Query: 166 VIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213
I L + G TIL+ TH D K+ + ++ G L+E+
Sbjct: 197 ATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQD 246
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 16/214 (7%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT----SKKQLGF 79
+ L + M +++ + ++LG +G GK+TL G + G I S+K +
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81
Query: 80 MPQQISLY---PEFTIDEMICYYGLIYG-----MSLQQIKEKAEYLQALLHLNHFKRK-C 130
+ + I + P+ + Y + +G + +I+++ + + H K K
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT 141
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITT 189
LS GQ++RV++A L+ +P++LILDEPT+G+DP+ EI L+ + E G TI+I T
Sbjct: 142 HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIAT 201
Query: 190 HYIDEAK-KSHMIGLMRKG-ILLEESPPKVLLEK 221
H ID + +M++G ++L+ +P +V EK
Sbjct: 202 HDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 112/216 (51%), Gaps = 23/216 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSIT-SKK 75
VL L + V+K +L+G+SGCGK+T++ + G L+G I L++ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL------NHFKRK 129
QLG + Q+ L+ + +I E I Y +S ++I A+ +A +H + + +
Sbjct: 1108 QLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAK--EANIHQFIDSLPDKYNTR 1164
Query: 130 CGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A L+ P +L+LDE TS +D +E++ L A GRT
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDKAREGRTC 1223
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I +++ G + E + LL +
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 19 SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTT-------LLSCITGQNVLNGGNIHLSI 71
S K +L L + V+ +L+G SGCGK+T L + G ++G +I
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 72 TS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH--- 125
++ +G + Q+ L+ TI E I Y M +++ ++A ++ L H
Sbjct: 459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD 517
Query: 126 --FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ LSGGQ++R+++A L+ +P++L+LDE TS +D +E + L A GR
Sbjct: 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGR 576
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLEE 212
T ++ H + + + +I G+++E+
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 112/216 (51%), Gaps = 23/216 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSIT-SKK 75
VL L + V+K +L+G+SGCGK+T++ + G L+G I L++ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL------NHFKRK 129
QLG + Q+ L+ + +I E I Y +S ++I A+ +A +H + + +
Sbjct: 1108 QLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAK--EANIHQFIDSLPDKYNTR 1164
Query: 130 CGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A L+ P +L+LDE TS +D +E++ L A GRT
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDKAREGRTC 1223
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I +++ G + E + LL +
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 19 SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTT-------LLSCITGQNVLNGGNIHLSI 71
S K +L L + V+ +L+G SGCGK+T L + G ++G +I
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 72 TS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH--- 125
++ +G + Q+ L+ TI E I Y M +++ ++A ++ L H
Sbjct: 459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD 517
Query: 126 --FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ LSGGQ++R+++A L+ +P++L+LDE TS +D +E + L A GR
Sbjct: 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGR 576
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLEE 212
T ++ H + + + +I G+++E+
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-------QNVLNGGNIH---LSITS 73
+ + + + V + I +L+GA+G GKTT LS I G + + NG +I + +
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL--NHFKRKCG 131
+ + +P+ ++PE T+ E + G + IK E++ +L K+ G
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXX-GAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI-LITTH 190
+LSGG+Q+ +++ L P+LL DEP+ G+ P++ E++ + + + G TI L+ +
Sbjct: 139 TLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198
Query: 191 YIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMK 225
+ K +H ++ G ++ E LL+ ++
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLDNEXVR 233
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%)
Query: 41 LLGASGCGKTTLLSCITG-------QNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTID 93
LLG +G GK+ L I G + LNG +I ++ +GF+PQ +L+P ++
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 94 EMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPEL 153
I Y GL +++ + E + L + RK LSGG+++RV+LA L+ P L
Sbjct: 89 RNIAY-GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147
Query: 154 LILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTH-YIDEAKKSHMIGLMRKGILLE 211
L+LDEP S +D + L ++ E IL TH I+ A + + +M G ++E
Sbjct: 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207
Query: 212 ESPPKVLLEKYNMKSLE 228
+ K L N + E
Sbjct: 208 KGKLKELFSAKNGEVAE 224
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 12/182 (6%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS------KKQL 77
YVL + + IY ++G +G GKTTLL + G + G I L + +K +
Sbjct: 25 YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFLDGSPADPFLLRKNV 83
Query: 78 GFMPQQ-ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-SLSG 135
G++ Q S T++E + + I G+ +++++ + + L+ L+ +LSG
Sbjct: 84 GYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSG 143
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH---YI 192
GQ++R+++A L D L LDEP S +DP EI+ L L G+ I++ TH Y+
Sbjct: 144 GQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYL 203
Query: 193 DE 194
D+
Sbjct: 204 DD 205
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQNVLNGGNIHLSIT------ 72
L+ + + V IY ++GASG GK+TL+ C+ T +VL G +++
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 73 SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKCG 131
+++Q+G + Q +L T+ + + ++K + L +L+ L +
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 139
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH 190
+LSGGQ++RV++A L +P++L+ DE TS +DP I L + G TIL+ TH
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 191 YIDEAKK-SHMIGLMRKGILLEE 212
+D K+ + ++ G L+E+
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQ 222
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI-HLSITS-KKQ 76
L + + + +L+G SG GK+T+ S IT G+ +++G ++ ++ S + Q
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGS---- 132
+ + Q + L+ + T+ I Y S +QI+E A A+ +N +
Sbjct: 419 VALVSQNVHLFND-TVANNIAY-ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476
Query: 133 ----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGGQ++R+++A LL D +LILDE TS +D I L L + RT L+
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVI 535
Query: 189 THYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
H + +K+ I ++ G+++E LLE
Sbjct: 536 AHRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 115/216 (53%), Gaps = 26/216 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ VEN + ++ ++ +L + K I ++LG +GCGK+TLL + G I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG--------I 54
Query: 68 HLSITSK----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY---LQAL 120
H I K + +GF+PQ S +++ +++ + + + K +Y +QAL
Sbjct: 55 HRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH-DYQVAMQAL 113
Query: 121 --LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
L+L H KR+ SLSGGQ++ + +A + + +L++LDEPTS +D + + + L+
Sbjct: 114 DYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173
Query: 178 LAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
LA+S T++ TTH + + ++ + K +LL +
Sbjct: 174 LAQSQNMTVVFTTH-----QPNQVVAIANKTLLLNK 204
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 16/203 (7%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITSKKQLGFMP---- 81
L + ++ LLG SGCGKTT L I G G I++ + ++ F+P
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 82 ------QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
Q +LYP T+ + I + + + Q+I ++ + L L RK LS
Sbjct: 85 DVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELS 144
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH-YI 192
GGQ++RV+L ++ P++ + DEP S +D + + L L G T + TH +
Sbjct: 145 GGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQV 204
Query: 193 DEAKKSHMIGLMRKGILLEESPP 215
+ I + KG L + P
Sbjct: 205 EAXTXGDRIAVXNKGELQQVGTP 227
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 22/225 (9%)
Query: 14 AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGN 66
+++ + ++ P +L + ++++K + +G SG GK+TL++ I +GQ +++G N
Sbjct: 346 SFQYNDNEAP-ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404
Query: 67 IHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA---LL 121
I +T + Q+G + Q L+ + T+ E I G +++ E A+ A ++
Sbjct: 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILL-GRPTATD-EEVVEAAKMANAHDFIM 461
Query: 122 HLNH-FKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
+L + + G LSGGQ++R+S+A L++P +LILDE TS +D + +E I L
Sbjct: 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD-LESESIIQEAL 520
Query: 177 YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ RT LI H + + I ++ G ++E + L+ K
Sbjct: 521 DVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI-HLSITS-KK 75
L + + + +L+G SG GK+T+ S IT G +++G ++ ++ S +
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGS--- 132
Q+ + Q + L+ + T+ I Y S +QI+E A A+ +N +
Sbjct: 418 QVALVSQNVHLFND-TVANNIAY-ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475
Query: 133 -----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
LSGGQ++R+++A LL D +LILDE TS +D I L L + RT L+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLV 534
Query: 188 TTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
H + +++ I ++ GI++E LL ++ +
Sbjct: 535 IAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 571
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 10/203 (4%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-------ITSKKQLGFMP 81
+ +++ + LLG SG GKTT+L I G G++ + K+ +G +
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRR 140
Q +L+ T+ + + + + ++ + L + L + R LSGGQQ+R
Sbjct: 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQR 153
Query: 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEA-KKS 198
V+LA L P++L+ DEP + ID I E+ + + E G T + TH +EA + +
Sbjct: 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 213
Query: 199 HMIGLMRKGILLEESPPKVLLEK 221
+ ++ +G + + P+ + EK
Sbjct: 214 DRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNV 61
+ V + + R + L+ + + + + + G +G GK+TLL + G +V
Sbjct: 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64
Query: 62 LNGGNIHLSITSKKQLG--FMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYL 117
L G ++ +G F + + E DE+ Y + +K+ E++
Sbjct: 65 LYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV 124
Query: 118 QALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L + FK + LSGG++RRV++A ++H+P++LILDEP G+D E LL
Sbjct: 125 G--LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD----REGKTDLL 178
Query: 177 YLAES----GRTILITTHYIDEAKKSHM--IGLMRKGILLEESPPKVLLEKYN 223
+ E G+T+++ +H I E +H+ + ++ KG + + LEKY+
Sbjct: 179 RIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNV 61
+ V + + R + L+ + + + + + G +G GK+TLL + G +V
Sbjct: 7 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 66
Query: 62 LNGGNIHLSITSKKQLG--FMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYL 117
L G ++ +G F + + E DE+ Y + +K+ E++
Sbjct: 67 LYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV 126
Query: 118 QALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L + FK + LSGG++RRV++A ++H+P++LILDEP G+D E LL
Sbjct: 127 G--LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD----REGKTDLL 180
Query: 177 YLAES----GRTILITTHYIDEAKKSHM--IGLMRKGILLEESPPKVLLEKYN 223
+ E G+T+++ +H I E +H+ + ++ KG + + LEKY+
Sbjct: 181 RIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------G 58
+ I +N + + K P VL + ++ +L+G +G GKTT+++ + G
Sbjct: 352 RGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410
Query: 59 QNVLNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
Q +++G +I S + +G + Q L+ T+ E + Y G + ++IKE A+
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN--PGATDEEIKEAAK- 466
Query: 117 LQALLHLNHFKR------------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
L H +HF + LS GQ++ +++ L +P++LILDE TS +D
Sbjct: 467 ---LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ I + L E G+T +I H ++ K + +I ++R G ++E L++K
Sbjct: 524 TKTEKSIQAAMWKLME-GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
++K + ++G +G GKTT + + G G I +T + + PQ I E T+
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLT----VAYKPQYIKADYEGTV 364
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
E++ I L K E L+ L ++ + R+ LSGG+ +RV++A TLL D +
Sbjct: 365 YELLSK---IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDAD 421
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTHYI 192
+ +LDEP++ +D + + +L E +T L+ H +
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 32/190 (16%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---------------GGNIH 68
+VL +L + V++ + ++G +G GK+T + + GQ + N GN
Sbjct: 36 FVLYRLPV-VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 69 LSITSKKQLGFM-----PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---EYLQAL 120
+ K + G + PQ + L P+ ++I L++ E E ++AL
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL--------LKKADETGKLEEVVKAL 146
Query: 121 LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
N +R+ LSGG+ +RV++A LL + DEP+S +D + L+E
Sbjct: 147 ELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 181 SGRTILITTH 190
G+++L+ H
Sbjct: 207 EGKSVLVVEH 216
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
++K + ++G +G GKTT + + G G + +T + + PQ I E T+
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT----VAYKPQYIKAEYEGTV 434
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
E++ I L K E L+ L ++ + R LSGG+ +RV++A TLL D +
Sbjct: 435 YELLSK---IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 491
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTHYI 192
+ +LDEP++ +D + + +L E +T L+ H +
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 45/206 (21%)
Query: 22 LPYVLDKLCM--------------TVQKSTIYSLLGASGCGKTTLLSCITGQ-------- 59
LP LD+ C+ V+ + ++G +G GKTT + + GQ
Sbjct: 89 LPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148
Query: 60 -----NVLNG--GNIHLSITSKKQLG-----FMPQQISLYPEFTIDEMICYYGLIYGMSL 107
NV+ GN + + + G PQ + L P+ G + + L
Sbjct: 149 NDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK-------AVKGKVREL-L 200
Query: 108 QQIKEKAEYLQALLHL---NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+++ E ++ + + L N R+ LSGG+ +RV++A LL DEP+S +D
Sbjct: 201 KKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 165 PVIAEEIWNHLLYLAESGRTILITTH 190
++ + LA G+ +L+ H
Sbjct: 261 IRQRLKVARVIRRLANEGKAVLVVEH 286
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
++K + ++G +G GKTT + + G G + +T + + PQ I E T+
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT----VAYKPQYIKAEYEGTV 420
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
E++ I L K E L+ L ++ + R LSGG+ +RV++A TLL D +
Sbjct: 421 YELLSK---IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 477
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTHYI 192
+ +LDEP++ +D + + +L E +T L+ H +
Sbjct: 478 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 45/206 (21%)
Query: 22 LPYVLDKLCM--------------TVQKSTIYSLLGASGCGKTTLLSCITGQ-------- 59
LP LD+ C+ V+ + ++G +G GKTT + + GQ
Sbjct: 75 LPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 134
Query: 60 -----NVLNG--GNIHLSITSKKQLGFM-----PQQISLYPEFTIDEMICYYGLIYGMSL 107
NV+ GN + + + G + PQ + L P+ G + + L
Sbjct: 135 NDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK-------AVKGKVREL-L 186
Query: 108 QQIKEKAEYLQALLHL---NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+++ E ++ + + L N R+ LSGG+ +RV++A LL DEP+S +D
Sbjct: 187 KKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
Query: 165 PVIAEEIWNHLLYLAESGRTILITTH 190
++ + LA G+ +L+ H
Sbjct: 247 IRQRLKVARVIRRLANEGKAVLVVEH 272
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TG 58
K I EN + ++ + D + TV +L+G SG GK+T+L + +G
Sbjct: 51 KGRIEFENVHFSYADGRETLQD-VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 59 QNVLNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAE 115
++G +I + + +G +PQ L+ + TI + I Y + G ++ + A
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 116 YLQALLHL-NHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
A++ ++ + G LSGG+++RV++A T+L P +++LDE TS +D
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I L + + RT ++ H + + I +++ G ++E + LL +
Sbjct: 229 IQASLAKVC-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 20/230 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ V++ + K L + ++ + +L+G SG GK+T+ + T ++ G+I
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 69 LS---------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L ++ + Q + L+ + TI I Y + +QI++ A A
Sbjct: 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQAARQAHA 459
Query: 120 LLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ + + + SLSGGQ++RV++A LL D +LILDE TS +D I
Sbjct: 460 MEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L L + +T+L+ H + +++ I ++ +G ++E LL +
Sbjct: 520 QAALDEL-QKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 24/230 (10%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70
V AY H + VL L T+ + +L+G +G GK+T+ + + GG + L
Sbjct: 22 VSFAYPNHPNV--QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79
Query: 71 ITS---------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
Q+ + Q+ L+ + E I YGL ++++I A A
Sbjct: 80 GEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMESGAHD 137
Query: 122 HLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
++ F + LSGGQ++ V+LA L+ P LLILD+ TS +D +
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRV-Q 196
Query: 174 HLLYLAE--SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
LLY + + RT+L+ TH + A+++H I +++G + E+ L+E+
Sbjct: 197 RLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 33/228 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLSIT 72
L + + T +L+G +G GK+T+ I G+NV N + +
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNV----NKYNRNS 90
Query: 73 SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-----EYLQALLHL--NH 125
+ +G +PQ L+ E TI I Y G + + IK ++++AL
Sbjct: 91 IRSIIGIVPQDTILFNE-TIKYNILY-GKLDATDEEVIKATKSAQLYDFIEALPKKWDTI 148
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
K LSGG+++R+++A LL DP+++I DE TS +D E ++ + RT+
Sbjct: 149 VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK-TEYLFQKAVEDLRKNRTL 207
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL-------EKYNMKS 226
+I H + + I L+ KG ++E+ K LL E +NM+S
Sbjct: 208 IIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQS 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 24/230 (10%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70
V AY H + VL L T+ + +L+G +G GK+T+ + + GG + L
Sbjct: 22 VSFAYPNHPNV--QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79
Query: 71 ITS---------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
Q+ + Q+ L+ + E I YGL ++++I A A
Sbjct: 80 GEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMESGAHD 137
Query: 122 HLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
++ F + LSGGQ++ V+LA L+ P LLILD TS +D +
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV-Q 196
Query: 174 HLLYLAE--SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
LLY + + RT+L+ T + A+++H I +++G + E+ L+E+
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 23/231 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
++ EN R+ VL + +V+ ++ ++LG +G GK+TL++ I G +
Sbjct: 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 68 HLSITSKK--QLGFMPQQISLYPEFTIDEMICYYGLIY--------GMSLQQIKEKAEYL 117
+ + +L + IS P+ E + + G I + +I E A+
Sbjct: 401 EVDELDVRTVKLKDLRGHISAVPQ----ETVLFSGTIKENLKWGREDATDDEIVEAAKIA 456
Query: 118 QA---LLHL-----NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
Q ++ L + +R + SGGQ++R+S+A L+ P++LILD+ TS +DP+ +
Sbjct: 457 QIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEK 516
Query: 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
I + L + G T I T I A + I ++ +G + K LLE
Sbjct: 517 RILDGLKRYTK-GCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+I V NA + P L+ + ++ + + +++G GCGK++LLS + + ++
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEG 60
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
H++I K + ++PQQ + + ++ E I + + + + + L L L
Sbjct: 61 HVAI--KGSVAYVPQQAWIQND-SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGD 117
Query: 128 R-----KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-- 180
R K +LSGGQ++RVSLA + + ++ + D+P S +D + + I+ +++
Sbjct: 118 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177
Query: 181 SGRTILITTHYIDEAKKSHMIGLMRKGILLE 211
+T ++ TH + + +I +M G + E
Sbjct: 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 20/200 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-KK 75
+L + Q ++I + G SG GK+T+ S + G+ ++G I ++S+ + +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 76 QLGFMPQQISLYPEFTIDEMICY--YGLIYGMSLQQIKEKA------EYLQALLHLNHFK 127
Q+GF+ Q ++ TI E + Y G L Q+ + A E + L+ +
Sbjct: 77 QIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
R +SGGQ++R+++A L +P++L+LDE T+ +D +E + L GRT L+
Sbjct: 136 RGV-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSE-SESMVQKALDSLMKGRTTLV 193
Query: 188 TTHYIDEAKKSHMIGLMRKG 207
H + + I + KG
Sbjct: 194 IAHRLSTIVDADKIYFIEKG 213
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQFS 90
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCG--------SLS 134
+ P TI E I I+G+S + + ++ + Q ++ F K +LS
Sbjct: 91 WIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 144
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 145 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 204
Query: 195 AKKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 205 LKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQFS 78
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCG--------SLS 134
+ P TI E I I+G+S + + ++ + Q ++ F K +LS
Sbjct: 79 WIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 132
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192
Query: 195 AKKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 193 LKKADKILILHEG 205
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 24/162 (14%)
Query: 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-----------------GQNVLNGGNIHL 69
D + + + ++++ +++G S GK+T++ +T G+++L L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 70 SITSKKQLGFMPQ--QISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLNH 125
K++ +PQ Q SL P + E +G+ S ++ EKA ++ LN
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 126 ---FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGG ++RV +A+ LL DP +LILDEPTS +D
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQNS 108
Query: 85 SLYPEFTIDEMIC--------YYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKCGSLSG 135
+ P TI E I Y +I L++ I + AE +L +LSG
Sbjct: 109 WIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-----TLSG 162
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQ+ R+SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222
Query: 196 KKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 223 KKADKILILHEG 234
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS----GRVSFCSQFS 108
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCGS--------LS 134
+ P TI E I I+G+S + + K+ + Q + F + + LS
Sbjct: 109 WIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D E+++ + + +T ++ T ++
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 195 AKKSHMIGLMRKG 207
+K+ I ++ +G
Sbjct: 223 LRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS----GRVSFCSQFS 108
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCGS--------LS 134
+ P TI E I I+G+S + + K+ + Q + F + + LS
Sbjct: 109 WIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D E+++ + + +T ++ T ++
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 195 AKKSHMIGLMRKG 207
+K+ I ++ +G
Sbjct: 223 LRKADKILILHQG 235
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS----GRVSFCSQFS 108
Query: 85 SLYPEFTIDEMIC--------YYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKCGSLSG 135
+ P TI E I Y ++ LQQ I + AE +L +LSG
Sbjct: 109 WIMPG-TIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV-----TLSG 162
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQ+ R+SLA + D +L +LD P +D E+++ + + +T ++ T ++
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 222
Query: 196 KKSHMIGLMRKG 207
+K+ I ++ +G
Sbjct: 223 RKADKILILHQG 234
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQNS 108
Query: 85 SLYPEFTIDEMIC--------YYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKCGSLSG 135
+ P TI E I Y +I L++ I + AE +L +LSG
Sbjct: 109 WIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-----TLSG 162
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQ+ R+SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222
Query: 196 KKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 223 KKADKILILHEG 234
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS----GRVSFCSQFS 108
Query: 85 SLYPEFTIDEMIC---------YYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKCGSLS 134
+ P TI E I Y ++ LQQ I + AE +L +LS
Sbjct: 109 WIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV-----TLS 162
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D E+++ + + +T ++ T ++
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 195 AKKSHMIGLMRKG 207
+K+ I ++ +G
Sbjct: 223 LRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS----GRVSFCSQFS 108
Query: 85 SLYPEFTIDEMIC---------YYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKCGSLS 134
+ P TI E I Y ++ LQQ I + AE +L +LS
Sbjct: 109 WIMPG-TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV-----TLS 162
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D E+++ + + +T ++ T ++
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 195 AKKSHMIGLMRKG 207
+K+ I ++ +G
Sbjct: 223 LRKADKILILHQG 235
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQFS 108
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCG--------SLS 134
+ P TI E I I G+S + + ++ + Q ++ F K +LS
Sbjct: 109 WIMPG-TIKENI-----IAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 162
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 222
Query: 195 AKKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 223 LKKADKILILHEG 235
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 22/165 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----------SITS 73
+L K+ + K + L G +G GKTTLL+ + G ++L + T
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 74 KKQLGFMPQQISLYPEFTIDEMI---CYYGLIYGMSLQQ-----IKEKAEYLQALLHLNH 125
++ +GF+ SL +F E + G + + Q I+ +A L L+ +
Sbjct: 96 RQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSA 153
Query: 126 FKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
++ G LS G+++RV +A L P++LILDEP +G+D + E
Sbjct: 154 KAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQFS 78
Query: 85 SLYPEFTIDEMIC--------YYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKCGSLSG 135
+ P TI E I Y +I L++ I + AE +L +LSG
Sbjct: 79 WIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-----TLSG 132
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQ+ R+SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 133 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 192
Query: 196 KKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 193 KKADKILILHEG 204
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQFS 108
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCG--------SLS 134
+ P TI E I I+G+S + + ++ + Q ++ F K +LS
Sbjct: 109 WIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 162
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GQQ ++SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 163 EGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 222
Query: 195 AKKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 223 LKKADKILILHEG 235
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 24/230 (10%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70
V AY H + VL L T+ + +L+G +G GK+T+ + + GG + L
Sbjct: 22 VSFAYPNHPNV--QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79
Query: 71 ITS---------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
Q+ + Q+ L+ + E I Y GL ++++I A A
Sbjct: 80 GEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHD 137
Query: 122 HLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
++ F + L+ GQ++ V+LA L+ P LLILD TS +D +
Sbjct: 138 FISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV-Q 196
Query: 174 HLLYLAE--SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
LLY + + RT+L+ T + A+++H I +++G + E+ L+E+
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 22/216 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---------KK 75
VL L T++ + +L+G +G GK+T+ + + GG + L +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKR------- 128
Q+ + Q+ ++ ++ E I Y GL ++++I A A ++ +
Sbjct: 92 QVAAVGQEPQVFGR-SLQENIAY-GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 149
Query: 129 KCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES--GRTI 185
+ GS LSGGQ++ V+LA L+ P +LILD+ TS +D ++ LLY + R++
Sbjct: 150 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV-EQLLYESPERYSRSV 208
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L+ T ++ +++ I + G + E + L+EK
Sbjct: 209 LLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 244
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 26/160 (16%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS------KK 75
+++ + + + + +++G +G GK+TLL +TG + G HL ++ S +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMS-----LQQIKEKAEYLQALLHLNHFKRKC 130
M Q L F++ E+I YG S LQQ+ + + L AL +R
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-AL-----AQRDY 139
Query: 131 GSLSGGQQRRVSLAITLLH------DPELLILDEPTSGID 164
LSGG+Q+RV LA L P L LDEPTS +D
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 18/178 (10%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ 83
+ L+ + + V + +LG +G GKTTLL I+G + GNI ++ +++ +
Sbjct: 19 FSLENINLEVNGEKVI-ILGPNGSGKTTLLRAISGL-LPYSGNIFINGMEVRKIRNYIRY 76
Query: 84 ISLYPE-----FTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQ 137
+ PE T+++++ Y + G+ E L+AL L +RK LS GQ
Sbjct: 77 STNLPEAYEIGVTVNDIVYLYEELKGLDRDLF---LEMLKALKLGEEILRRKLYKLSAGQ 133
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL--YLAESGRTILITTHYID 193
V ++ L PE++ LDEP +D H++ Y+ E G+ ++ TH +D
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVDAA-----RRHVISRYIKEYGKEGILVTHELD 186
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + +++ + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----GRISFCSQFS 108
Query: 85 SLYPEFTIDEMIC--------YYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKCGSLSG 135
+ P TI E I Y +I L++ I + AE +L +LS
Sbjct: 109 WIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-----TLSE 162
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQQ ++SLA + D +L +LD P +D + +EI+ + + +T ++ T ++
Sbjct: 163 GQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222
Query: 196 KKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 223 KKADKILILHEG 234
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 17/150 (11%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG-FMPQQI-SLYPE 89
T + +TI +LG +G GKTT+L + G+ + N G+ + + + L F ++I + + E
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 90 FTIDEMICYYGLIY------------GMSLQQIKE--KAEYLQALLHL-NHFKRKCGSLS 134
+E+ + + Y L +I E K + ++ LL++ N + + LS
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILS 140
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGID 164
GG +R+ +A +LL + ++ I D+P+S +D
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 33/146 (22%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ-LGFMPQQISLYPEFT 91
++ I +LG +G GKTT + G+ + G S+T +KQ L + PQ+I +P
Sbjct: 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEG----SVTPEKQILSYKPQRI--FPN-- 342
Query: 92 IDEMICYYGLIYGMSLQQIKEKA------------EYLQALLHLNHF-KRKCGSLSGGQQ 138
Y ++QQ E A E + L+L+ + LSGG+
Sbjct: 343 -----------YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGEL 391
Query: 139 RRVSLAITLLHDPELLILDEPTSGID 164
+++ +A TL + +L +LD+P+S +D
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLD 417
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 36/227 (15%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG----GNIHLSITSKKQL---- 77
L L V+ I L+G +G GK+TLL+ + G G L S +L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ----ALLHLNHFKRKCGSL 133
++ QQ + P F + +Y ++ Q K + E L AL + R L
Sbjct: 76 AYLSQQQT--PPFATP--VWHYLTLH----QHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 134 SGGQQRRVSLAITLLH-----DP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
SGG+ +RV LA +L +P +LL+LD+P + +D + L L++ G I+
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIV 187
Query: 187 ITTHYIDEA-KKSHMIGLMRKGILL-----EE--SPPKVLLEKYNMK 225
+++H ++ + +H L++ G +L EE +PP L + Y M
Sbjct: 188 MSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN-LAQAYGMN 233
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIH------LSITSKKQ 76
+L L + V +++++G +G GK+TL + + G+ + GG + L+++ + +
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 77 LG---FM----PQQI-----SLYPEFTIDEMICYYG--LIYGMSLQQI-KEKAEYLQALL 121
G FM P +I + + ++ + Y G + Q + +EK L+
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
L G SGG+++R + + +PEL ILDE SG+D + + + + L +
Sbjct: 136 DLLTRSVNVG-FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 194
Query: 182 GRTILITTHY 191
R+ +I THY
Sbjct: 195 KRSFIIVTHY 204
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIH------LSITSKKQ 76
+L L + V +++++G +G GK+TL + + G+ + GG + L+++ + +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 77 LG---FM----PQQI-----SLYPEFTIDEMICYYG--LIYGMSLQQI-KEKAEYLQALL 121
G FM P +I + + ++ + Y G + Q + +EK L+
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 154
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
L G SGG+++R + + +PEL ILDE SG+D + + + + L +
Sbjct: 155 DLLTRSVNVG-FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 213
Query: 182 GRTILITTHY 191
R+ +I THY
Sbjct: 214 KRSFIIVTHY 223
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 26/222 (11%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85
L L V+ I L+G +G GK+TLL+ + G + G + + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGKGSIQFAGQPLEAWSATKLA 72
Query: 86 LYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQ----ALLHLNHFKRKCGSLSGGQQ 138
L+ + + + Y Q K + E L AL + R LSGG+
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 132
Query: 139 RRVSLAITLLH-----DP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
+RV LA +L +P +LL+LD+P +D + L L++ G I++++H
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
Query: 192 IDEA-KKSHMIGLMRKGILL-----EE--SPPKVLLEKYNMK 225
++ + +H L++ G +L EE +PP L + Y M
Sbjct: 193 LNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN-LAQAYGMN 233
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG----GNIHLSITSKKQLG--- 78
L L V+ I L+G +G GK+TLL+ G G L S +L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 79 -FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ----ALLHLNHFKRKCGSL 133
++ QQ + P F + +Y ++ Q K + E L AL + R L
Sbjct: 76 AYLSQQQT--PPFATP--VWHYLTLH----QHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 134 SGGQQRRVSLAITLLH-----DP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
SGG+ +RV LA +L +P +LL+LDEP + +D + L L++ G I+
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIV 187
Query: 187 ITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEKYNM 224
++H ++ + +H L++ G L + +L N+
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNL 226
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ- 83
+L+K + ++++ Y + G +GCGK+TL+ I V GF Q+
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---------------GFPTQEE 494
Query: 84 -ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKR----KCGSLSGGQQ 138
++Y E ID ++ + + K L+ +LSGG +
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWK 554
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+++LA +L + ++L+LDEPT+ +D V + N YL G T + +H
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN---YLNTCGITSITISH 603
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGGQ+ ++ LA P L++LDEPT+ +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 4 KDKCAIRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL 62
K K ++V N ++ + P + D + S+ +++G +G GK+TL++ +TG+ +
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 63 NGGNIH 68
G ++
Sbjct: 726 TSGEVY 731
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 28/219 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG----GNIHLSITSKKQLG--- 78
L L V+ I L+G +G GK+TLL+ G G L S +L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 79 -FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ----ALLHLNHFKRKCGSL 133
++ QQ + P F + +Y ++ Q K + E L AL + R L
Sbjct: 76 AYLSQQQT--PPFATP--VWHYLTLH----QHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 134 SGGQQRRVSLAITLLH-----DP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
SGG+ +RV LA +L +P +LL+LDEP + +D + L L + G I+
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIV 187
Query: 187 ITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEKYNM 224
++H ++ + +H L++ G L + +L N+
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNL 226
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 106 SLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE---LLILDEPTS 161
S+ +IK K E L + L + +LSGG+ +RV LA L L ILDEPT+
Sbjct: 818 SIPKIKRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTT 877
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201
G+ + + L L ++G T+L+ H +D K + I
Sbjct: 878 GLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 917
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 107 LQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGI 163
L++I+++ +LQ + L R G+LSGG+ +R+ LA + L +LDEP+ G+
Sbjct: 478 LREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGL 537
Query: 164 DPVIAEEIWNHLLYLAESGRTILITTH 190
+ + L + G T+++ H
Sbjct: 538 HQRDNDRLIATLKSXRDLGNTLIVVEH 564
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ- 83
+L+K + ++++ Y + G +GCGK+TL I V GF Q+
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVD---------------GFPTQEE 488
Query: 84 -ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL----NHFKRKCGSLSGGQQ 138
++Y E ID ++ + + K L+ +LSGG +
Sbjct: 489 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWK 548
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+++LA +L + ++L+LDEPT+ +D V + N YL G T + +H
Sbjct: 549 XKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN---YLNTCGITSITISH 597
Score = 34.7 bits (78), Expect = 0.071, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGGQ+ ++ LA P L++LDEPT+ +D
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 4 KDKCAIRVENA-YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL 62
K K ++V N ++ + P + D + S+ +++G +G GK+TL++ +TG+ +
Sbjct: 661 KQKAIVKVTNXEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 719
Query: 63 NGGNIH 68
G ++
Sbjct: 720 TSGEVY 725
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ- 83
+L+K + ++++ Y + G +GCGK+TL I V GF Q+
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVD---------------GFPTQEE 494
Query: 84 -ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL----NHFKRKCGSLSGGQQ 138
++Y E ID ++ + + K L+ +LSGG +
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWK 554
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+++LA +L + ++L+LDEPT+ +D V + N YL G T + +H
Sbjct: 555 XKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN---YLNTCGITSITISH 603
Score = 34.7 bits (78), Expect = 0.071, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGGQ+ ++ LA P L++LDEPT+ +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 4 KDKCAIRVENA-YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL 62
K K ++V N ++ + P + D + S+ +++G +G GK+TL++ +TG+ +
Sbjct: 667 KQKAIVKVTNXEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 63 NGGNIH 68
G ++
Sbjct: 726 TSGEVY 731
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLS 134
++ + + I+ + T+++ + ++ S+ +IK K E L + L + +LS
Sbjct: 491 EVTYKGKNIAEVLDMTVEDALDFF-----ASIPKIKRKLETLYDVGLGYMKLGQPATTLS 545
Query: 135 GGQQRRVSLAITL---LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
GG+ +RV LA L + L ILDEPT+G+ + + L L ++G T+L+ H
Sbjct: 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Query: 192 IDEAKKSHMI------GLMRKGILLEESPPKVLLE 220
+D K + I G R G ++ P+ + E
Sbjct: 606 LDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 107 LQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLH--DPELLILDEPTSGI 163
L++I+++ +LQ + L R G+LSGG+ +R+ LA + L +LDEP+ G+
Sbjct: 176 LREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGL 235
Query: 164 DPVIAEEIWNHLLYLAESGRTILITTHYID 193
+ + L + + G T+++ H D
Sbjct: 236 HQRDNDRLIATLKSMRDLGNTLIVVEHDED 265
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 133 LSGGQQRRVSLAITLLHDPE---LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
LSGG+ +R+ LA L + +LDEPT+G+ P E + L+ L ++G T++
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 190 H 190
H
Sbjct: 791 H 791
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 128 RKCGSLSGGQQRRVSLAITLLHD--PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
R +LS G+ +R+ LA L + + +LDEP++G+ P E + + L L G ++
Sbjct: 375 RSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434
Query: 186 LITTHYIDEAKKS 198
+ H +D +++
Sbjct: 435 FVVEHDLDVIRRA 447
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 94 EMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITL---LH 149
+M L + S+ +IK K E L + L + +LSGG+ +RV LA L +
Sbjct: 806 DMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 865
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201
L ILDEPT+G+ + + L L ++G T+L+ H +D K + I
Sbjct: 866 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 917
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 42/197 (21%)
Query: 11 VENAYKRHSSKL------PYVLDKLCMTVQ-----KSTIYSLLGASGCGKTTLLSCITGQ 59
VE Y+ SS Y+ ++ C T Q K ++ L+G G+ T +S
Sbjct: 399 VERRYRETSSDYIREQMEKYMAEQPCPTCQGYRLKKESLAVLVGGKHIGEVTAMSVTEAL 458
Query: 60 NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+G L +T K E I +I L++I+++ +LQ
Sbjct: 459 AFFDG----LELTEK--------------EAQIARLI----------LREIRDRLGFLQN 490
Query: 120 L-LHLNHFKRKCGSLSGGQQRRVSLAITLLH--DPELLILDEPTSGIDPVIAEEIWNHLL 176
+ L R G+LSGG+ +R+ LA + L +LDEP+ G+ + + L
Sbjct: 491 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
Query: 177 YLAESGRTILITTHYID 193
+ + G T+++ H D
Sbjct: 551 SMRDLGNTLIVVEHDED 567
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 102 IYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHD--PELLILDE 158
I G L++I+++ E+L + L R +LSGG+ +R+ LA + + +LDE
Sbjct: 433 IVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDE 492
Query: 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
PT G+ P E + L L + G T+++ H
Sbjct: 493 PTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLS 134
++ + + IS + T+DE + ++ ++ IK + L + L + +LS
Sbjct: 753 EITYKGKNISDILDMTVDEALEFF-----KNIPSIKRTLQVLHDVGLGYVKLGQPATTLS 807
Query: 135 GGQQRRVSLAITLLHDPE---LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
GG+ +R+ LA L L ILDEPT G+ ++ L L + G T+++ H
Sbjct: 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867
Query: 192 IDEAKKS-HMIGLMRKG 207
+D K + H+I L +G
Sbjct: 868 LDVIKNADHIIDLGPEG 884
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 41/203 (20%)
Query: 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN------ 66
N++K H +LP T + + L+G +G GK+T L + G+ N G
Sbjct: 90 NSFKLH--RLP--------TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE 139
Query: 67 ----IHLSITSKKQLGFM------------PQQISLYPEFTIDEMICYYGLIYGMSLQQI 110
I S+ Q F PQ + P I + G + + +++
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKS 198
Query: 111 KEKAE-YLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
E + Y++ L N KR LSGG+ +R ++ ++ + + ++ + DEP+S +D
Sbjct: 199 PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD----- 253
Query: 170 EIWNHLLYLAESGRTILITTHYI 192
L A+ R++L T Y+
Sbjct: 254 --VKQRLNAAQIIRSLLAPTKYV 274
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 2 DLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61
DL++ A R + ++ +VL+ S I ++G +G GKTTL+ + G
Sbjct: 344 DLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403
Query: 62 LNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
+ G K + PQ+I+ P+F ++ I G L + + + ++ L
Sbjct: 404 PDEGQD----IPKLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNP-QFQTDVVKPLR 456
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ ++ LSGG+ +RV++ + L ++ ++DEP++ +D
Sbjct: 457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 110 IKEKAEYLQALLHLNHFKRK--------------CGSLSGGQQRRVSLAITLLHDPE--- 152
I+E AE+ + + ++ + R +LSGG+ +RV LA L
Sbjct: 827 IEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRT 886
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201
+ ILDEPT+G+ ++ N + L + G T+++ H +D K S I
Sbjct: 887 VYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 102 IYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHD--PELLILDE 158
I G L++I+ + +L + L R +LSGG+ +R+ LA + L +LDE
Sbjct: 490 IAGQVLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDE 549
Query: 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199
P+ G+ + L L + G T+++ H DE H
Sbjct: 550 PSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH--DEDTIEH 588
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHL 69
V++ +++ +L+ + ++ LLG +G GK+TLLS +LN G I +
Sbjct: 22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL--RLLNTEGEIQI 79
Query: 70 SITS---------KKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
S +K G +PQ++ ++ +D + S Q+I + A+ +
Sbjct: 80 DGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH-------SDQEIWKVADEV 132
Query: 118 QALLHLNHFKRKCG--------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
+ F K LS G ++ + LA ++L ++L+LDEP++ +DPV
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG---------QNVLNGGNI-HLSITSK 74
+L + + V K +++L+G +G GK+TL + G + +L+G NI LS +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 75 KQLG-FMPQQISL-YPEFTIDEMI-----CYYGLIYGMS--LQQIKEKAEYLQ-ALLHLN 124
+ G F+ Q + P TI + G G++ ++K+ E L +L+
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 125 HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
+ + SGG+++R + L+ +P +LDE SG+D + + + +
Sbjct: 138 RYLNE--GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFG 195
Query: 185 ILITTHY 191
L+ THY
Sbjct: 196 ALVITHY 202
>pdb|3RPT|X Chain X, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
pdb|3RPT|A Chain A, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
Length = 282
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
G+Q A L + P +I+D SG DP IAE W Y ++
Sbjct: 86 GKQWIDEFAAGLKNRPAYIIVDPGGSGGDPEIAEAAWRFAAYAGKA 131
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 218 LLEKYNMKSLEDVFLLLSSKQ--QHDRIEQRR----KSFL-WPIQAIQEHTRYLANFLPL 270
+L+ Y KSL+D+ +L + + D++ R + FL P Q + T +L +PL
Sbjct: 427 ILQDY--KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPL 484
Query: 271 TYPIDSFRSIVFRGFDIFHWQVYY 294
I F+ I+ +D Q +Y
Sbjct: 485 KETIKGFQQILAGEYDHLPEQAFY 508
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 218 LLEKYNMKSLEDVFLLLSSKQ--QHDRIEQRR----KSFL-WPIQAIQEHTRYLANFLPL 270
+L+ Y KSL+D+ +L + + D++ R + FL P Q + T +L +PL
Sbjct: 381 ILQDY--KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPL 438
Query: 271 TYPIDSFRSIVFRGFDIFHWQVYY 294
I F+ I+ +D Q +Y
Sbjct: 439 KETIKGFQQILAGEYDHLPEQAFY 462
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 218 LLEKYNMKSLEDVFLLLSSKQ--QHDRIEQRR----KSFL-WPIQAIQEHTRYLANFLPL 270
+L+ Y KSL+D+ +L + + D++ R + FL P Q + T +L +PL
Sbjct: 381 ILQDY--KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPL 438
Query: 271 TYPIDSFRSIVFRGFDIFHWQVYY 294
I F+ I+ +D Q +Y
Sbjct: 439 KETIKGFQQILAGEYDHLPEQAFY 462
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 218 LLEKYNMKSLEDVFLLLSSKQ--QHDRIEQRR----KSFL-WPIQAIQEHTRYLANFLPL 270
+L+ Y KSL+D+ +L + + D++ R + FL P Q + T +L +PL
Sbjct: 369 ILQDY--KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPL 426
Query: 271 TYPIDSFRSIVFRGFDIFHWQVYY 294
I F+ I+ +D Q +Y
Sbjct: 427 KETIKGFQQILAGEYDHLPEQAFY 450
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 218 LLEKYNMKSLEDVFLLLSSKQ--QHDRIEQRR----KSFL-WPIQAIQEHTRYLANFLPL 270
+L+ Y KSL+D+ +L + + D++ R + FL P Q + T +L +PL
Sbjct: 379 ILQDY--KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPL 436
Query: 271 TYPIDSFRSIVFRGFDIFHWQVYY 294
I F+ I+ +D Q +Y
Sbjct: 437 KETIKGFQQILAGEYDHLPEQAFY 460
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 218 LLEKYNMKSLEDVFLLLSSKQ--QHDRIEQRR----KSFL-WPIQAIQEHTRYLANFLPL 270
+L+ Y KSL+D+ +L + + D++ R + FL P Q + T +L +PL
Sbjct: 381 ILQDY--KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPL 438
Query: 271 TYPIDSFRSIVFRGFDIFHWQVYY 294
I F+ I+ +D Q +Y
Sbjct: 439 KETIKGFQQILAGEYDHLPEQAFY 462
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 218 LLEKYNMKSLEDVFLLLSSKQ--QHDRIEQRR----KSFL-WPIQAIQEHTRYLANFLPL 270
+L+ Y KSL+D+ +L + + D++ R + FL P Q + T ++ +PL
Sbjct: 377 ILQDY--KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPL 434
Query: 271 TYPIDSFRSIVFRGFDIFHWQVYY 294
I F+ I+ +D Q +Y
Sbjct: 435 KETIKGFQQILAGDYDHLPEQAFY 458
>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|B Chain B, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|C Chain C, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|D Chain D, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
Length = 293
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 16 KRHSSKLPYVLDKLCMTVQKSTIYSL------LGASGCGKTTLLSCITGQNVLNGGNIHL 69
R + P L ++ K T+Y++ L ASG G+ L S ITG G H
Sbjct: 133 ARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHY 192
Query: 70 SITSKKQLGFM-PQQISLYP 88
+ QLGFM I L P
Sbjct: 193 GASKAAQLGFMRTAAIELAP 212
>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
Length = 528
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
H +L I DEPT G DP + W+H YL
Sbjct: 32 HTLQLAIGDEPTEGFDPXLG---WSHGSYL 58
>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|B Chain B, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|C Chain C, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|D Chain D, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
Length = 262
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 44 ASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFM-PQQISLYP 88
ASG G+ L S ITG G H T QLGFM I L P
Sbjct: 136 ASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAP 181
>pdb|1LO5|D Chain D, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
Length = 233
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71
+ + S Y L GA G TLL +N N+H++I
Sbjct: 189 STEPSVNYDLFGAQGQYSNTLLRIYRDNKTINSENMHIAI 228
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61
KS +L+G GK+T+ + +TG+NV
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALTGENV 32
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61
KS +L+G GK+T+ + +TG+NV
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENV 28
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61
KS +L+G GK+T+ + +TG+NV
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENV 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,437,411
Number of Sequences: 62578
Number of extensions: 376171
Number of successful extensions: 1350
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 165
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)