Query psy106
Match_columns 321
No_of_seqs 364 out of 1826
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:29:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 9.5E-65 2.1E-69 451.9 26.0 219 7-227 1-232 (240)
2 COG1125 OpuBA ABC-type proline 100.0 8.4E-61 1.8E-65 435.1 22.7 220 8-229 1-234 (309)
3 COG1135 AbcC ABC-type metal io 100.0 9.6E-60 2.1E-64 438.4 24.2 217 8-224 1-235 (339)
4 COG4555 NatA ABC-type Na+ tran 100.0 9.7E-60 2.1E-64 415.5 19.1 227 8-235 1-237 (245)
5 COG1131 CcmA ABC-type multidru 100.0 3.1E-58 6.6E-63 435.2 27.7 213 7-221 3-227 (293)
6 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-58 4.5E-63 416.7 25.1 215 5-221 5-236 (263)
7 COG1120 FepC ABC-type cobalami 100.0 2.2E-58 4.8E-63 425.5 23.5 221 7-232 1-237 (258)
8 COG3839 MalK ABC-type sugar tr 100.0 4.8E-58 1E-62 437.7 25.5 215 7-223 2-226 (338)
9 PRK13537 nodulation ABC transp 100.0 3E-57 6.5E-62 430.8 29.1 214 6-221 5-228 (306)
10 COG3842 PotA ABC-type spermidi 100.0 4E-58 8.6E-63 440.4 22.9 217 6-224 3-230 (352)
11 COG1116 TauB ABC-type nitrate/ 100.0 9.9E-58 2.2E-62 415.7 23.6 202 7-210 2-212 (248)
12 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.6E-57 1.2E-61 414.7 25.1 220 6-231 2-235 (254)
13 COG1136 SalX ABC-type antimicr 100.0 1.6E-56 3.5E-61 405.9 26.3 203 8-210 1-221 (226)
14 PRK13536 nodulation factor exp 100.0 5.9E-56 1.3E-60 427.6 29.6 214 6-221 39-262 (340)
15 PRK11432 fbpC ferric transport 100.0 1.5E-55 3.2E-60 426.4 29.9 219 3-223 1-229 (351)
16 COG3638 ABC-type phosphate/pho 100.0 4.2E-56 9E-61 400.8 22.8 222 7-233 2-246 (258)
17 PRK11650 ugpC glycerol-3-phosp 100.0 2.1E-55 4.4E-60 426.2 29.4 215 7-223 2-227 (356)
18 TIGR02314 ABC_MetN D-methionin 100.0 3.4E-55 7.3E-60 422.6 29.8 215 8-222 1-232 (343)
19 TIGR03265 PhnT2 putative 2-ami 100.0 5.1E-55 1.1E-59 423.0 29.9 216 6-223 2-227 (353)
20 COG4152 ABC-type uncharacteriz 100.0 3E-56 6.5E-61 403.1 18.9 215 7-223 1-222 (300)
21 COG1118 CysA ABC-type sulfate/ 100.0 5.6E-56 1.2E-60 412.6 20.8 217 7-225 1-232 (345)
22 TIGR01288 nodI ATP-binding ABC 100.0 9.5E-55 2.1E-59 412.7 28.8 214 6-221 2-225 (303)
23 COG1124 DppF ABC-type dipeptid 100.0 4.1E-55 9E-60 396.2 24.5 212 6-221 1-232 (252)
24 COG2884 FtsE Predicted ATPase 100.0 2.2E-55 4.7E-60 384.7 20.3 206 8-214 1-220 (223)
25 TIGR03258 PhnT 2-aminoethylpho 100.0 2.7E-54 5.9E-59 419.1 29.4 213 8-222 5-230 (362)
26 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-54 2.8E-59 397.9 24.9 214 7-221 2-229 (235)
27 PRK09452 potA putrescine/sperm 100.0 3.8E-54 8.2E-59 419.7 29.7 217 5-223 11-237 (375)
28 COG1117 PstB ABC-type phosphat 100.0 3.6E-55 7.8E-60 389.6 20.2 216 6-225 5-242 (253)
29 cd03261 ABC_Org_Solvent_Resist 100.0 3.4E-54 7.4E-59 393.6 27.2 210 9-220 1-226 (235)
30 TIGR03522 GldA_ABC_ATP gliding 100.0 4.5E-54 9.8E-59 407.8 28.6 211 8-221 2-222 (301)
31 PRK10851 sulfate/thiosulfate t 100.0 5.6E-54 1.2E-58 415.7 29.3 213 8-222 2-228 (353)
32 cd03296 ABC_CysA_sulfate_impor 100.0 8.5E-54 1.8E-58 392.2 28.3 212 8-221 2-227 (239)
33 PRK11000 maltose/maltodextrin 100.0 9E-54 2E-58 416.6 29.5 213 8-222 3-225 (369)
34 TIGR00960 3a0501s02 Type II (G 100.0 5.2E-54 1.1E-58 387.4 25.8 202 8-209 1-216 (216)
35 cd03265 ABC_DrrA DrrA is the A 100.0 8.1E-54 1.8E-58 387.4 26.9 208 9-218 1-219 (220)
36 COG1137 YhbG ABC-type (unclass 100.0 2.2E-55 4.8E-60 387.5 15.2 222 6-232 2-237 (243)
37 PRK11153 metN DL-methionine tr 100.0 1.6E-53 3.5E-58 411.1 29.4 214 8-221 1-231 (343)
38 PRK11607 potG putrescine trans 100.0 1.9E-53 4.2E-58 415.1 30.1 216 6-223 17-242 (377)
39 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.9E-53 6.2E-58 388.0 29.3 222 8-231 1-232 (236)
40 TIGR01188 drrA daunorubicin re 100.0 8.5E-54 1.8E-58 406.0 26.4 204 16-221 1-214 (302)
41 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-53 2.5E-58 384.3 25.6 203 9-213 1-213 (213)
42 cd03258 ABC_MetN_methionine_tr 100.0 2.2E-53 4.7E-58 387.5 27.0 213 8-220 1-230 (233)
43 cd03218 ABC_YhbG The ABC trans 100.0 3.8E-53 8.2E-58 385.4 27.4 210 9-220 1-222 (232)
44 PRK11629 lolD lipoprotein tran 100.0 6E-53 1.3E-57 385.2 28.8 209 7-215 4-229 (233)
45 cd03219 ABC_Mj1267_LivG_branch 100.0 3.2E-53 6.9E-58 386.8 26.6 210 9-220 1-232 (236)
46 cd03266 ABC_NatA_sodium_export 100.0 3.7E-53 8E-58 382.0 26.3 206 8-213 1-218 (218)
47 PRK09536 btuD corrinoid ABC tr 100.0 3.4E-53 7.5E-58 415.9 28.3 220 7-231 2-236 (402)
48 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.8E-53 1.7E-57 381.0 26.6 208 9-216 1-219 (220)
49 cd03301 ABC_MalK_N The N-termi 100.0 8.7E-53 1.9E-57 378.3 26.3 203 9-213 1-213 (213)
50 PRK09493 glnQ glutamine ABC tr 100.0 1.7E-52 3.7E-57 383.5 28.7 212 8-221 1-226 (240)
51 COG0411 LivG ABC-type branched 100.0 1E-53 2.2E-58 387.4 20.1 222 6-232 2-248 (250)
52 cd03263 ABC_subfamily_A The AB 100.0 9.2E-53 2E-57 379.9 26.3 209 9-218 1-219 (220)
53 PRK11264 putative amino-acid A 100.0 2.7E-52 5.9E-57 384.1 29.2 212 8-221 3-234 (250)
54 PRK13637 cbiO cobalt transport 100.0 2.2E-52 4.7E-57 393.8 28.9 213 8-220 2-234 (287)
55 TIGR01186 proV glycine betaine 100.0 9.7E-53 2.1E-57 408.0 27.2 205 16-222 1-221 (363)
56 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.5E-53 1.8E-57 379.7 24.9 201 9-209 1-218 (218)
57 cd03224 ABC_TM1139_LivF_branch 100.0 1E-52 2.2E-57 379.8 25.5 207 9-219 1-220 (222)
58 PRK13647 cbiO cobalt transport 100.0 2E-52 4.3E-57 391.6 28.2 211 7-218 3-225 (274)
59 cd03269 ABC_putative_ATPase Th 100.0 1.7E-52 3.7E-57 376.0 26.7 203 9-213 1-210 (210)
60 PRK10070 glycine betaine trans 100.0 2.3E-52 4.9E-57 409.9 29.7 216 7-222 3-256 (400)
61 PRK11831 putative ABC transpor 100.0 2E-52 4.4E-57 390.2 27.9 214 6-221 5-234 (269)
62 PRK10584 putative ABC transpor 100.0 3.3E-52 7.1E-57 378.6 27.9 209 4-212 2-227 (228)
63 TIGR02673 FtsE cell division A 100.0 1.7E-52 3.6E-57 376.7 25.3 199 8-208 1-214 (214)
64 PRK13650 cbiO cobalt transport 100.0 2.6E-52 5.7E-57 391.7 27.7 215 7-221 3-230 (279)
65 PRK13643 cbiO cobalt transport 100.0 3.5E-52 7.6E-57 392.6 28.4 212 8-220 1-233 (288)
66 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-52 2.7E-57 384.4 24.6 209 8-218 1-233 (243)
67 PRK15079 oligopeptide ABC tran 100.0 5.4E-52 1.2E-56 398.7 30.0 218 5-222 5-253 (331)
68 PRK10619 histidine/lysine/argi 100.0 8E-52 1.7E-56 383.2 29.5 214 6-221 3-242 (257)
69 PRK13651 cobalt transporter AT 100.0 4E-52 8.7E-57 395.5 28.1 213 8-221 2-255 (305)
70 PRK13634 cbiO cobalt transport 100.0 4.5E-52 9.7E-57 392.2 28.2 212 8-220 2-235 (290)
71 TIGR02211 LolD_lipo_ex lipopro 100.0 3.7E-52 7.9E-57 376.3 26.5 203 8-210 1-220 (221)
72 TIGR03411 urea_trans_UrtD urea 100.0 6E-52 1.3E-56 380.1 28.0 211 7-220 1-231 (242)
73 cd03260 ABC_PstB_phosphate_tra 100.0 2.6E-52 5.7E-57 379.0 25.4 205 9-217 1-226 (227)
74 PRK10895 lipopolysaccharide AB 100.0 3.5E-52 7.6E-57 381.7 26.2 212 7-220 2-226 (241)
75 PRK13635 cbiO cobalt transport 100.0 5.1E-52 1.1E-56 389.9 27.9 214 7-220 4-229 (279)
76 TIGR00972 3a0107s01c2 phosphat 100.0 8.6E-52 1.9E-56 380.6 28.9 210 8-221 1-233 (247)
77 PRK14242 phosphate transporter 100.0 1E-51 2.3E-56 381.1 29.4 215 3-221 1-238 (253)
78 PRK10908 cell division protein 100.0 5.3E-52 1.1E-56 376.1 26.8 202 8-211 1-217 (222)
79 PRK13641 cbiO cobalt transport 100.0 7.7E-52 1.7E-56 390.0 28.9 212 8-220 2-234 (287)
80 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.5E-52 1.6E-56 380.0 28.0 211 9-220 1-225 (242)
81 cd03268 ABC_BcrA_bacitracin_re 100.0 3.5E-52 7.5E-57 373.5 25.1 199 9-213 1-208 (208)
82 PRK13644 cbiO cobalt transport 100.0 5.9E-52 1.3E-56 388.4 27.7 212 8-220 1-224 (274)
83 COG4175 ProV ABC-type proline/ 100.0 7.7E-53 1.7E-57 392.6 20.9 222 7-228 3-262 (386)
84 cd03256 ABC_PhnC_transporter A 100.0 5.5E-52 1.2E-56 379.5 26.0 210 9-219 1-233 (241)
85 PRK11124 artP arginine transpo 100.0 1.1E-51 2.3E-56 378.6 27.9 210 8-219 2-229 (242)
86 PRK11614 livF leucine/isoleuci 100.0 8.4E-52 1.8E-56 378.3 26.9 210 7-220 4-226 (237)
87 PRK11248 tauB taurine transpor 100.0 1.1E-51 2.3E-56 382.9 27.8 207 8-216 1-216 (255)
88 cd03264 ABC_drug_resistance_li 100.0 6.4E-52 1.4E-56 372.5 25.5 201 9-213 1-211 (211)
89 PRK13638 cbiO cobalt transport 100.0 8.6E-52 1.9E-56 386.2 27.2 211 8-220 1-225 (271)
90 PRK11300 livG leucine/isoleuci 100.0 1.2E-51 2.5E-56 380.9 27.8 213 6-220 3-243 (255)
91 PRK14268 phosphate ABC transpo 100.0 1.8E-51 3.9E-56 381.3 29.0 212 6-221 10-243 (258)
92 cd03294 ABC_Pro_Gly_Bertaine T 100.0 7.9E-52 1.7E-56 386.4 26.1 210 10-221 26-251 (269)
93 PRK13648 cbiO cobalt transport 100.0 1.7E-51 3.7E-56 383.8 28.1 219 1-220 1-231 (269)
94 PRK13548 hmuV hemin importer A 100.0 1.5E-51 3.3E-56 382.2 27.4 211 8-220 2-230 (258)
95 PRK13636 cbiO cobalt transport 100.0 2E-51 4.3E-56 386.4 28.5 213 7-220 4-231 (283)
96 PRK13652 cbiO cobalt transport 100.0 2.3E-51 5E-56 384.7 28.7 213 7-220 2-227 (277)
97 PRK13646 cbiO cobalt transport 100.0 1.7E-51 3.7E-56 387.5 27.9 212 8-220 2-235 (286)
98 PRK11308 dppF dipeptide transp 100.0 3.2E-51 7E-56 392.8 30.1 217 6-222 3-246 (327)
99 PRK13631 cbiO cobalt transport 100.0 2.8E-51 6E-56 392.2 29.1 215 5-220 18-265 (320)
100 PRK13632 cbiO cobalt transport 100.0 2.2E-51 4.7E-56 383.7 27.5 217 4-220 3-231 (271)
101 PRK11231 fecE iron-dicitrate t 100.0 1.9E-51 4.2E-56 380.2 26.9 211 8-220 2-227 (255)
102 cd03292 ABC_FtsE_transporter F 100.0 1.8E-51 3.9E-56 369.8 25.8 200 9-209 1-214 (214)
103 cd03262 ABC_HisP_GlnQ_permease 100.0 1.5E-51 3.2E-56 370.0 24.9 199 9-209 1-213 (213)
104 PRK11247 ssuB aliphatic sulfon 100.0 2E-51 4.4E-56 381.9 26.5 206 3-216 7-219 (257)
105 cd03225 ABC_cobalt_CbiO_domain 100.0 1.3E-51 2.8E-56 370.3 24.3 199 10-208 1-211 (211)
106 PRK11022 dppD dipeptide transp 100.0 5.2E-51 1.1E-55 391.2 29.9 216 8-223 3-246 (326)
107 PRK14247 phosphate ABC transpo 100.0 5.2E-51 1.1E-55 375.8 28.6 212 7-221 2-235 (250)
108 PRK10575 iron-hydroxamate tran 100.0 2.5E-51 5.5E-56 381.9 26.5 216 3-220 6-237 (265)
109 PRK13649 cbiO cobalt transport 100.0 5E-51 1.1E-55 382.5 28.4 212 8-220 2-234 (280)
110 PRK14267 phosphate ABC transpo 100.0 5.8E-51 1.3E-55 376.1 28.1 213 6-221 2-238 (253)
111 TIGR03005 ectoine_ehuA ectoine 100.0 6.2E-51 1.3E-55 376.0 28.2 211 9-221 1-237 (252)
112 PRK13640 cbiO cobalt transport 100.0 4.4E-51 9.5E-56 383.9 27.6 215 6-220 3-232 (282)
113 cd03257 ABC_NikE_OppD_transpor 100.0 4.4E-51 9.6E-56 370.2 26.1 206 8-213 1-228 (228)
114 TIGR03410 urea_trans_UrtE urea 100.0 3.2E-51 6.9E-56 372.6 25.1 205 9-218 1-219 (230)
115 cd03226 ABC_cobalt_CbiO_domain 100.0 2E-51 4.4E-56 368.0 23.4 196 10-210 1-205 (205)
116 PRK14273 phosphate ABC transpo 100.0 9.1E-51 2E-55 375.3 28.3 212 6-221 5-239 (254)
117 PRK13633 cobalt transporter AT 100.0 5.8E-51 1.3E-55 382.6 27.4 216 6-221 2-234 (280)
118 PRK10771 thiQ thiamine transpo 100.0 6.3E-51 1.4E-55 371.6 26.7 210 8-221 1-220 (232)
119 PRK15112 antimicrobial peptide 100.0 8.3E-51 1.8E-55 379.0 28.0 216 6-221 2-240 (267)
120 TIGR03415 ABC_choXWV_ATP choli 100.0 8.5E-51 1.8E-55 396.5 29.2 199 23-221 37-255 (382)
121 COG0410 LivF ABC-type branched 100.0 3.3E-51 7.1E-56 368.4 24.1 213 6-221 1-227 (237)
122 PRK13639 cbiO cobalt transport 100.0 9.7E-51 2.1E-55 380.2 28.2 212 8-220 1-226 (275)
123 cd03235 ABC_Metallic_Cations A 100.0 2E-51 4.3E-56 369.8 22.7 200 10-212 1-212 (213)
124 PRK10744 pstB phosphate transp 100.0 1.3E-50 2.8E-55 375.9 28.5 212 6-221 11-245 (260)
125 PRK09473 oppD oligopeptide tra 100.0 1.4E-50 3.1E-55 388.8 29.6 218 6-223 10-254 (330)
126 TIGR02769 nickel_nikE nickel i 100.0 1E-50 2.2E-55 377.8 27.4 213 8-220 2-240 (265)
127 PRK11701 phnK phosphonate C-P 100.0 1.6E-50 3.5E-55 374.7 28.5 214 6-221 4-242 (258)
128 PRK14270 phosphate ABC transpo 100.0 1.8E-50 4E-55 372.6 28.7 212 6-221 2-236 (251)
129 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.5E-51 1.2E-55 366.4 24.5 201 9-213 1-211 (211)
130 TIGR03740 galliderm_ABC gallid 100.0 1.6E-50 3.4E-55 366.6 27.7 203 9-217 1-210 (223)
131 PRK13642 cbiO cobalt transport 100.0 1.9E-50 4E-55 378.6 28.1 214 7-220 3-229 (277)
132 PRK09984 phosphonate/organopho 100.0 1.9E-50 4.1E-55 375.0 27.8 211 6-218 2-240 (262)
133 PRK14274 phosphate ABC transpo 100.0 2.8E-50 6E-55 373.3 28.7 213 5-221 9-244 (259)
134 PRK14239 phosphate transporter 100.0 3.4E-50 7.4E-55 370.5 29.1 212 6-221 3-237 (252)
135 PRK10253 iron-enterobactin tra 100.0 1.1E-50 2.5E-55 377.4 26.1 214 5-220 4-233 (265)
136 PRK14241 phosphate transporter 100.0 3.2E-50 7E-55 372.6 28.9 212 7-221 3-243 (258)
137 TIGR01978 sufC FeS assembly AT 100.0 1.8E-50 3.9E-55 369.9 26.8 208 9-218 1-232 (243)
138 PRK14250 phosphate ABC transpo 100.0 1.4E-50 3E-55 371.8 26.1 208 7-221 2-222 (241)
139 PRK15093 antimicrobial peptide 100.0 3E-50 6.5E-55 386.4 29.3 216 7-222 2-250 (330)
140 PRK14269 phosphate ABC transpo 100.0 3E-50 6.4E-55 370.4 27.8 210 8-221 2-231 (246)
141 PRK14235 phosphate transporter 100.0 3.9E-50 8.5E-55 374.4 28.9 212 6-221 17-252 (267)
142 PRK14248 phosphate ABC transpo 100.0 4E-50 8.6E-55 374.2 28.8 212 6-221 19-253 (268)
143 cd03300 ABC_PotA_N PotA is an 100.0 3.8E-50 8.2E-55 366.7 27.7 211 9-221 1-221 (232)
144 PRK11144 modC molybdate transp 100.0 1.8E-50 3.9E-55 391.1 27.0 205 8-223 1-221 (352)
145 TIGR03873 F420-0_ABC_ATP propo 100.0 2.1E-50 4.5E-55 373.5 26.2 210 9-220 2-226 (256)
146 PRK13645 cbiO cobalt transport 100.0 3.2E-50 6.9E-55 379.0 27.9 213 7-220 5-240 (289)
147 COG3840 ThiQ ABC-type thiamine 100.0 3E-51 6.6E-56 356.7 19.1 210 8-221 1-220 (231)
148 cd03299 ABC_ModC_like Archeal 100.0 6.2E-50 1.3E-54 366.2 28.4 210 9-221 1-220 (235)
149 PRK14256 phosphate ABC transpo 100.0 7.3E-50 1.6E-54 368.8 28.8 212 8-222 4-238 (252)
150 PRK14245 phosphate ABC transpo 100.0 8.8E-50 1.9E-54 367.9 29.1 212 6-221 1-235 (250)
151 PRK10762 D-ribose transporter 100.0 1.5E-50 3.2E-55 407.7 25.8 211 7-219 3-229 (501)
152 PRK14240 phosphate transporter 100.0 8.8E-50 1.9E-54 367.6 28.5 210 8-221 3-235 (250)
153 PRK15439 autoinducer 2 ABC tra 100.0 3E-50 6.4E-55 406.6 27.4 212 3-220 6-229 (510)
154 TIGR00968 3a0106s01 sulfate AB 100.0 8.5E-50 1.8E-54 365.7 27.9 210 9-220 1-220 (237)
155 PRK14259 phosphate ABC transpo 100.0 7.7E-50 1.7E-54 373.0 27.9 213 4-221 9-254 (269)
156 TIGR01277 thiQ thiamine ABC tr 100.0 5.7E-50 1.2E-54 360.9 26.1 202 9-214 1-212 (213)
157 PRK13549 xylose transporter AT 100.0 2.2E-50 4.7E-55 407.0 25.9 212 6-219 3-231 (506)
158 cd03297 ABC_ModC_molybdenum_tr 100.0 5E-50 1.1E-54 361.2 25.3 198 8-213 1-214 (214)
159 TIGR02142 modC_ABC molybdenum 100.0 5.1E-50 1.1E-54 388.2 27.1 204 13-222 4-223 (354)
160 PRK14272 phosphate ABC transpo 100.0 1.3E-49 2.9E-54 366.5 28.5 211 8-221 4-237 (252)
161 PRK14249 phosphate ABC transpo 100.0 1.8E-49 3.8E-54 366.1 29.1 213 6-222 2-237 (251)
162 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-49 3.7E-54 366.3 28.7 213 7-221 2-239 (253)
163 PRK09700 D-allose transporter 100.0 3.5E-50 7.5E-55 405.7 26.1 212 6-219 3-233 (510)
164 PRK14262 phosphate ABC transpo 100.0 1.7E-49 3.7E-54 365.8 28.1 211 7-221 2-235 (250)
165 PRK14251 phosphate ABC transpo 100.0 2.1E-49 4.5E-54 365.3 28.6 211 7-221 3-236 (251)
166 PRK14261 phosphate ABC transpo 100.0 2.8E-49 6.2E-54 365.1 28.6 214 4-221 2-238 (253)
167 PRK14237 phosphate transporter 100.0 3.4E-49 7.4E-54 368.1 29.1 212 6-221 18-252 (267)
168 TIGR03608 L_ocin_972_ABC putat 100.0 6.5E-50 1.4E-54 357.6 23.3 192 11-204 1-206 (206)
169 PRK14253 phosphate ABC transpo 100.0 2.7E-49 5.9E-54 364.2 27.9 211 7-221 2-234 (249)
170 COG4598 HisP ABC-type histidin 100.0 8.4E-51 1.8E-55 353.7 16.1 222 6-229 4-250 (256)
171 cd03267 ABC_NatA_like Similar 100.0 1.4E-49 3.1E-54 364.2 25.1 191 23-213 34-236 (236)
172 PRK10418 nikD nickel transport 100.0 4.8E-49 1E-53 364.2 28.7 209 8-221 4-231 (254)
173 PRK14254 phosphate ABC transpo 100.0 4.7E-49 1E-53 370.9 29.1 211 6-221 37-270 (285)
174 PRK14238 phosphate transporter 100.0 4.3E-49 9.2E-54 368.4 28.5 212 6-221 22-256 (271)
175 PRK14255 phosphate ABC transpo 100.0 6.4E-49 1.4E-53 362.3 29.3 212 6-221 3-237 (252)
176 PRK10261 glutathione transport 100.0 3.1E-49 6.7E-54 407.9 30.1 216 6-221 311-554 (623)
177 COG0444 DppD ABC-type dipeptid 100.0 2E-49 4.2E-54 372.4 25.9 218 8-225 1-248 (316)
178 PRK14236 phosphate transporter 100.0 5.8E-49 1.3E-53 367.5 28.9 212 6-221 23-257 (272)
179 cd03252 ABCC_Hemolysin The ABC 100.0 9.2E-50 2E-54 364.5 22.7 209 9-221 1-226 (237)
180 PRK14271 phosphate ABC transpo 100.0 7.2E-49 1.6E-53 368.0 29.3 212 6-221 19-252 (276)
181 PRK10261 glutathione transport 100.0 2E-49 4.4E-54 409.2 27.9 217 5-221 9-259 (623)
182 PRK13547 hmuV hemin importer A 100.0 2.3E-49 5E-54 370.9 25.4 211 8-220 1-244 (272)
183 PRK14275 phosphate ABC transpo 100.0 9E-49 2E-53 369.1 29.4 213 5-221 36-271 (286)
184 PRK14258 phosphate ABC transpo 100.0 1E-48 2.3E-53 363.5 28.9 212 7-221 6-246 (261)
185 PRK10419 nikE nickel transport 100.0 5.8E-49 1.3E-53 366.9 27.3 213 7-219 2-240 (268)
186 PRK14246 phosphate ABC transpo 100.0 7.5E-49 1.6E-53 364.2 27.5 214 5-221 7-242 (257)
187 COG1123 ATPase components of v 100.0 3.8E-49 8.2E-54 393.6 27.0 219 5-223 277-522 (539)
188 PRK14260 phosphate ABC transpo 100.0 1.2E-48 2.5E-53 362.6 28.3 211 7-221 6-244 (259)
189 PRK14244 phosphate ABC transpo 100.0 1.1E-48 2.3E-53 360.9 27.8 209 9-221 6-238 (251)
190 TIGR03269 met_CoM_red_A2 methy 100.0 5.5E-49 1.2E-53 397.9 28.3 214 6-220 277-517 (520)
191 PRK14243 phosphate transporter 100.0 8.4E-49 1.8E-53 364.9 27.2 211 6-221 8-249 (264)
192 PRK14265 phosphate ABC transpo 100.0 1.4E-48 3E-53 365.6 28.5 211 6-221 18-259 (274)
193 PRK10247 putative ABC transpor 100.0 4.6E-49 9.9E-54 358.2 24.0 204 6-214 5-221 (225)
194 TIGR01257 rim_protein retinal- 100.0 5.6E-49 1.2E-53 439.7 29.8 218 6-223 1935-2162(2272)
195 PRK15056 manganese/iron transp 100.0 9.6E-49 2.1E-53 366.0 26.6 212 6-219 4-229 (272)
196 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-48 2.6E-53 353.9 26.3 201 9-209 2-219 (220)
197 PRK15134 microcin C ABC transp 100.0 9.8E-49 2.1E-53 396.9 28.7 216 6-221 3-247 (529)
198 cd03234 ABCG_White The White s 100.0 9.6E-49 2.1E-53 355.9 25.4 206 8-213 3-226 (226)
199 cd03251 ABCC_MsbA MsbA is an e 100.0 4.8E-49 1E-53 358.8 23.4 209 9-221 1-226 (234)
200 PRK11288 araG L-arabinose tran 100.0 7.5E-49 1.6E-53 395.4 26.9 208 6-215 2-224 (501)
201 PRK15134 microcin C ABC transp 100.0 8.4E-49 1.8E-53 397.4 27.0 215 6-221 273-516 (529)
202 TIGR02770 nickel_nikD nickel i 100.0 1.5E-48 3.3E-53 355.7 26.0 197 25-221 1-216 (230)
203 PRK14252 phosphate ABC transpo 100.0 4.9E-48 1.1E-52 359.6 29.3 213 5-221 13-250 (265)
204 TIGR02633 xylG D-xylose ABC tr 100.0 8.9E-49 1.9E-53 394.5 26.0 209 8-218 1-228 (500)
205 CHL00131 ycf16 sulfate ABC tra 100.0 3.2E-48 6.9E-53 357.4 27.4 210 6-217 5-238 (252)
206 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-48 3.5E-53 394.5 27.5 210 9-220 1-258 (520)
207 TIGR01184 ntrCD nitrate transp 100.0 8.3E-49 1.8E-53 357.8 22.9 193 26-218 1-202 (230)
208 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.6E-49 1.9E-53 356.6 22.9 200 9-213 23-224 (224)
209 PRK13538 cytochrome c biogenes 100.0 1.6E-48 3.4E-53 349.5 24.0 192 8-204 1-202 (204)
210 PRK14266 phosphate ABC transpo 100.0 4.6E-48 9.9E-53 356.2 27.6 211 7-221 2-235 (250)
211 PRK09544 znuC high-affinity zi 100.0 2.4E-48 5.1E-53 360.0 25.6 202 7-220 3-209 (251)
212 COG4181 Predicted ABC-type tra 100.0 3.4E-49 7.3E-54 341.1 18.6 207 5-211 3-226 (228)
213 PRK13543 cytochrome c biogenes 100.0 3E-48 6.5E-53 350.4 25.4 196 6-206 9-212 (214)
214 TIGR02324 CP_lyasePhnL phospho 100.0 2.6E-48 5.5E-53 352.1 25.0 197 8-204 1-222 (224)
215 PRK14257 phosphate ABC transpo 100.0 7.9E-48 1.7E-52 369.6 29.5 216 6-223 78-316 (329)
216 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.3E-48 2.9E-53 357.0 22.4 208 9-220 1-226 (238)
217 PRK10982 galactose/methyl gala 100.0 1.5E-48 3.2E-53 392.2 24.5 206 11-218 1-221 (491)
218 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-48 3.3E-53 352.5 22.1 197 9-213 3-220 (220)
219 PRK14263 phosphate ABC transpo 100.0 1.4E-47 3E-52 356.5 29.2 213 4-221 4-246 (261)
220 COG1123 ATPase components of v 100.0 5.2E-48 1.1E-52 385.4 27.5 301 7-313 4-339 (539)
221 PRK13549 xylose transporter AT 100.0 1.7E-48 3.6E-53 393.2 24.1 213 6-218 257-492 (506)
222 PRK13546 teichoic acids export 100.0 1.5E-47 3.2E-52 357.4 28.5 209 9-221 5-233 (264)
223 cd03254 ABCC_Glucan_exporter_l 100.0 2.5E-48 5.4E-53 353.0 22.5 207 9-220 3-226 (229)
224 PRK09580 sufC cysteine desulfu 100.0 1.2E-47 2.6E-52 352.5 27.1 209 8-218 1-233 (248)
225 COG4525 TauB ABC-type taurine 100.0 1.9E-48 4.1E-53 342.6 20.3 210 7-216 2-220 (259)
226 PRK14264 phosphate ABC transpo 100.0 2.6E-47 5.7E-52 362.3 28.5 212 6-221 43-290 (305)
227 COG4559 ABC-type hemin transpo 100.0 2.3E-48 5.1E-53 345.7 19.7 219 8-231 1-238 (259)
228 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.2E-47 2.6E-52 344.1 24.5 197 4-215 2-207 (207)
229 PRK10938 putative molybdenum t 100.0 4.1E-48 8.8E-53 388.8 23.8 203 8-220 3-224 (490)
230 COG1129 MglA ABC-type sugar tr 100.0 5.3E-48 1.1E-52 383.0 24.2 215 1-217 1-232 (500)
231 cd03253 ABCC_ATM1_transporter 100.0 1.1E-47 2.3E-52 350.4 24.4 207 9-220 1-224 (236)
232 PRK13539 cytochrome c biogenes 100.0 1.4E-47 3E-52 344.3 23.9 192 8-206 2-200 (207)
233 TIGR01257 rim_protein retinal- 100.0 1.5E-47 3.4E-52 428.2 29.7 215 7-222 927-1151(2272)
234 PRK03695 vitamin B12-transport 100.0 9.8E-48 2.1E-52 354.7 23.3 204 9-220 1-222 (248)
235 PRK09700 D-allose transporter 100.0 7.2E-48 1.6E-52 388.9 24.1 206 6-215 263-493 (510)
236 cd03231 ABC_CcmA_heme_exporter 100.0 1.3E-47 2.8E-52 343.1 22.5 188 9-204 1-198 (201)
237 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-47 2.4E-52 347.0 22.3 197 9-214 3-220 (221)
238 COG4604 CeuD ABC-type enteroch 100.0 3.2E-49 6.9E-54 347.9 11.1 220 8-232 1-234 (252)
239 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-47 2.4E-52 386.5 23.4 212 6-217 255-489 (500)
240 PRK13540 cytochrome c biogenes 100.0 2.3E-47 5E-52 341.0 22.7 188 8-202 1-197 (200)
241 cd03230 ABC_DR_subfamily_A Thi 100.0 2.6E-47 5.7E-52 333.5 22.4 164 9-209 1-173 (173)
242 cd03246 ABCC_Protease_Secretio 100.0 1.9E-47 4.1E-52 334.4 21.4 164 9-209 1-173 (173)
243 PRK13545 tagH teichoic acids e 100.0 8.2E-47 1.8E-51 378.0 28.6 214 4-221 17-233 (549)
244 cd03248 ABCC_TAP TAP, the Tran 100.0 1E-47 2.2E-52 348.7 20.1 200 6-209 9-226 (226)
245 cd03247 ABCC_cytochrome_bd The 100.0 2.6E-47 5.7E-52 334.7 22.0 170 9-213 1-178 (178)
246 cd03213 ABCG_EPDR ABCG transpo 100.0 6.1E-47 1.3E-51 337.4 24.3 178 8-213 3-194 (194)
247 cd03233 ABC_PDR_domain1 The pl 100.0 5.6E-47 1.2E-51 339.6 24.0 184 8-213 3-202 (202)
248 cd03215 ABC_Carb_Monos_II This 100.0 3.5E-47 7.6E-52 335.3 22.0 167 6-209 2-182 (182)
249 cd03229 ABC_Class3 This class 100.0 3.5E-47 7.7E-52 334.1 21.3 165 9-208 1-178 (178)
250 COG4161 ArtP ABC-type arginine 100.0 2.1E-47 4.6E-52 327.6 19.0 209 8-218 2-228 (242)
251 cd03232 ABC_PDR_domain2 The pl 100.0 1E-46 2.2E-51 335.3 24.0 178 8-213 3-192 (192)
252 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.5E-47 1.2E-51 355.5 23.0 203 9-221 3-226 (275)
253 TIGR01189 ccmA heme ABC export 100.0 7.4E-47 1.6E-51 337.0 22.8 187 9-202 1-196 (198)
254 PRK11819 putative ABC transpor 100.0 1.1E-46 2.4E-51 384.3 26.7 208 6-220 4-250 (556)
255 cd03288 ABCC_SUR2 The SUR doma 100.0 1.1E-46 2.3E-51 349.3 23.1 210 7-221 18-244 (257)
256 PRK15064 ABC transporter ATP-b 100.0 2.2E-46 4.7E-51 379.8 26.8 206 8-220 1-242 (530)
257 cd03217 ABC_FeS_Assembly ABC-t 100.0 2E-46 4.3E-51 335.4 22.9 176 9-216 1-190 (200)
258 TIGR01166 cbiO cobalt transpor 100.0 9.4E-47 2E-51 334.0 20.4 172 23-195 5-190 (190)
259 cd03250 ABCC_MRP_domain1 Domai 100.0 1.5E-46 3.2E-51 336.3 21.7 192 9-208 1-204 (204)
260 PRK10762 D-ribose transporter 100.0 1.4E-46 3.1E-51 378.8 24.2 206 6-218 255-482 (501)
261 PRK11288 araG L-arabinose tran 100.0 2.6E-46 5.5E-51 377.0 23.6 206 7-218 256-483 (501)
262 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7E-46 1.5E-50 378.0 26.6 208 6-220 2-248 (552)
263 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.4E-46 9.6E-51 387.9 24.7 203 8-221 451-674 (686)
264 COG3845 ABC-type uncharacteriz 100.0 3.6E-46 7.8E-51 364.7 22.3 207 6-214 2-223 (501)
265 cd03214 ABC_Iron-Siderophores_ 100.0 2.6E-46 5.6E-51 329.2 19.1 167 10-212 1-179 (180)
266 PRK13541 cytochrome c biogenes 100.0 8.3E-46 1.8E-50 329.7 22.6 186 8-201 1-192 (195)
267 PRK15439 autoinducer 2 ABC tra 100.0 5.8E-46 1.3E-50 375.3 24.1 207 6-219 266-491 (510)
268 PRK15064 ABC transporter ATP-b 100.0 8.4E-46 1.8E-50 375.5 25.1 202 7-220 318-525 (530)
269 PRK11174 cysteine/glutathione 100.0 1.2E-45 2.5E-50 378.2 26.2 208 8-221 349-573 (588)
270 PLN03211 ABC transporter G-25; 100.0 7.1E-46 1.5E-50 384.5 24.8 209 10-220 70-296 (659)
271 cd03228 ABCC_MRP_Like The MRP 100.0 5.9E-46 1.3E-50 324.4 20.3 162 9-208 1-171 (171)
272 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-45 2.3E-50 335.8 22.5 189 31-220 1-201 (223)
273 TIGR01842 type_I_sec_PrtD type 100.0 1.8E-45 3.9E-50 374.1 26.5 210 8-220 316-542 (544)
274 PRK11176 lipid transporter ATP 100.0 5.4E-46 1.2E-50 380.1 22.7 207 8-221 341-568 (582)
275 COG2274 SunT ABC-type bacterio 100.0 3.7E-46 8E-51 386.9 21.2 210 8-221 471-697 (709)
276 PRK10982 galactose/methyl gala 100.0 8.8E-46 1.9E-50 372.1 23.2 207 6-216 248-476 (491)
277 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.5E-45 3.3E-50 385.1 25.5 204 8-221 477-701 (710)
278 TIGR01187 potA spermidine/putr 100.0 1.7E-45 3.7E-50 352.8 23.5 182 41-222 1-192 (325)
279 PRK10535 macrolide transporter 100.0 4.8E-45 1E-49 378.2 28.7 213 7-219 3-231 (648)
280 cd03223 ABCD_peroxisomal_ALDP 100.0 2.2E-45 4.7E-50 319.9 21.6 163 9-207 1-163 (166)
281 cd03216 ABC_Carb_Monos_I This 100.0 2.6E-45 5.7E-50 318.5 21.9 151 9-211 1-162 (163)
282 PRK11160 cysteine/glutathione 100.0 1.3E-45 2.8E-50 377.6 23.4 206 8-221 338-563 (574)
283 PRK10790 putative multidrug tr 100.0 4.1E-45 8.9E-50 374.6 26.4 204 8-221 340-564 (592)
284 cd03290 ABCC_SUR1_N The SUR do 100.0 3.3E-45 7.2E-50 330.7 22.5 190 10-208 2-218 (218)
285 COG4988 CydD ABC-type transpor 100.0 3E-45 6.5E-50 364.9 23.7 209 8-221 318-544 (559)
286 TIGR03375 type_I_sec_LssB type 100.0 2E-45 4.3E-50 383.5 23.3 206 8-221 463-689 (694)
287 COG4608 AppF ABC-type oligopep 100.0 3.4E-45 7.3E-50 337.3 21.6 192 6-225 2-204 (268)
288 COG4586 ABC-type uncharacteriz 100.0 7E-46 1.5E-50 340.2 16.6 217 7-223 2-249 (325)
289 COG1132 MdlB ABC-type multidru 100.0 4.4E-45 9.6E-50 372.8 23.9 208 9-221 329-553 (567)
290 PRK11819 putative ABC transpor 100.0 1E-44 2.2E-49 369.8 26.1 206 6-220 322-533 (556)
291 PRK10938 putative molybdenum t 100.0 3.5E-45 7.6E-50 367.5 21.9 206 6-213 258-485 (490)
292 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.9E-44 6.2E-49 338.2 26.2 202 6-220 37-247 (282)
293 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-44 3.1E-49 368.4 25.9 205 6-219 320-530 (552)
294 TIGR00958 3a01208 Conjugate Tr 100.0 9.3E-45 2E-49 379.6 24.8 204 8-221 478-703 (711)
295 PRK13657 cyclic beta-1,2-gluca 100.0 3.1E-44 6.8E-49 368.0 28.1 209 8-221 334-559 (588)
296 TIGR01193 bacteriocin_ABC ABC- 100.0 9.4E-45 2E-49 379.2 23.8 209 8-221 473-698 (708)
297 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.6E-44 5.6E-49 332.2 23.2 189 24-219 8-206 (246)
298 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-44 2.3E-49 369.3 22.6 207 8-221 330-557 (571)
299 COG4148 ModC ABC-type molybdat 100.0 2E-45 4.3E-50 338.2 15.4 200 13-222 5-220 (352)
300 PRK10789 putative multidrug tr 100.0 3.4E-44 7.4E-49 366.7 25.6 206 8-221 313-539 (569)
301 TIGR01192 chvA glucan exporter 100.0 4.9E-44 1.1E-48 366.8 26.2 209 8-221 334-559 (585)
302 PRK13409 putative ATPase RIL; 100.0 3.6E-44 7.8E-49 367.7 24.9 197 6-215 338-537 (590)
303 PRK15177 Vi polysaccharide exp 100.0 4.5E-44 9.8E-49 323.6 22.4 187 25-219 2-191 (213)
304 TIGR01846 type_I_sec_HlyB type 100.0 4.7E-44 1E-48 373.3 25.5 210 8-221 455-681 (694)
305 TIGR02204 MsbA_rel ABC transpo 100.0 7.3E-44 1.6E-48 363.8 25.6 206 8-221 337-564 (576)
306 KOG0058|consensus 100.0 1.5E-44 3.2E-49 366.3 19.7 211 8-222 465-693 (716)
307 PRK10636 putative ABC transpor 100.0 1E-43 2.3E-48 367.6 24.7 201 6-219 310-516 (638)
308 COG4987 CydC ABC-type transpor 100.0 1.3E-44 2.9E-49 356.4 15.9 206 8-221 336-562 (573)
309 COG4172 ABC-type uncharacteriz 100.0 2.7E-43 5.9E-48 337.2 23.6 217 6-223 274-519 (534)
310 KOG0059|consensus 100.0 6.6E-44 1.4E-48 380.3 20.8 216 7-223 563-790 (885)
311 KOG0055|consensus 100.0 8.1E-44 1.7E-48 377.9 21.2 210 8-221 350-577 (1228)
312 KOG0057|consensus 100.0 1.2E-43 2.6E-48 349.9 20.0 203 8-220 351-574 (591)
313 COG4172 ABC-type uncharacteriz 100.0 4.8E-43 1E-47 335.5 22.9 220 5-224 3-251 (534)
314 PRK11147 ABC transporter ATPas 100.0 5.1E-43 1.1E-47 362.4 24.9 204 6-218 317-526 (635)
315 PRK10636 putative ABC transpor 100.0 8.6E-43 1.9E-47 360.8 26.2 204 8-219 1-235 (638)
316 COG1134 TagH ABC-type polysacc 100.0 1.5E-42 3.2E-47 314.8 23.3 212 7-222 2-238 (249)
317 TIGR00955 3a01204 The Eye Pigm 100.0 6.5E-43 1.4E-47 360.6 23.5 198 23-220 38-256 (617)
318 TIGR00956 3a01205 Pleiotropic 100.0 1.4E-42 3E-47 384.0 27.3 211 7-217 758-990 (1394)
319 PRK11147 ABC transporter ATPas 100.0 2.3E-42 4.9E-47 357.6 27.0 206 7-220 2-243 (635)
320 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1E-42 2.2E-47 296.8 20.1 143 9-208 1-144 (144)
321 COG4674 Uncharacterized ABC-ty 100.0 3.4E-43 7.3E-48 309.3 16.9 212 7-221 4-236 (249)
322 TIGR02857 CydD thiol reductant 100.0 8.3E-43 1.8E-47 353.0 21.2 189 8-204 320-529 (529)
323 cd03236 ABC_RNaseL_inhibitor_d 100.0 9.8E-43 2.1E-47 323.4 19.6 193 12-213 4-220 (255)
324 COG4619 ABC-type uncharacteriz 100.0 7.9E-44 1.7E-48 306.9 11.3 196 9-209 4-212 (223)
325 PRK10522 multidrug transporter 100.0 1.7E-42 3.7E-47 352.6 23.2 194 8-213 322-531 (547)
326 PLN03232 ABC transporter C fam 100.0 1.6E-42 3.5E-47 386.1 25.0 205 8-221 1234-1459(1495)
327 TIGR01194 cyc_pep_trnsptr cycl 100.0 2E-42 4.2E-47 352.9 23.1 195 8-212 337-551 (555)
328 PTZ00265 multidrug resistance 100.0 2.3E-42 4.9E-47 383.2 24.4 206 8-220 1165-1452(1466)
329 COG1119 ModF ABC-type molybden 100.0 6.6E-43 1.4E-47 317.1 16.2 207 6-214 29-256 (257)
330 PLN03130 ABC transporter C fam 100.0 2.9E-42 6.4E-47 385.3 25.0 205 8-221 1237-1462(1622)
331 PLN03073 ABC transporter F fam 100.0 1.5E-41 3.3E-46 354.6 27.2 201 6-218 506-712 (718)
332 PTZ00265 multidrug resistance 100.0 3.3E-42 7.1E-47 381.9 23.0 199 8-207 382-655 (1466)
333 cd03222 ABC_RNaseL_inhibitor T 100.0 6E-42 1.3E-46 302.0 19.0 152 12-216 4-159 (177)
334 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-41 2.9E-46 379.3 24.7 205 8-221 1284-1509(1522)
335 PLN03140 ABC transporter G fam 100.0 3.9E-41 8.4E-46 372.6 28.1 209 8-216 867-1106(1470)
336 PTZ00243 ABC transporter; Prov 100.0 1.8E-41 3.8E-46 378.3 25.0 205 8-221 1308-1534(1560)
337 TIGR02868 CydC thiol reductant 100.0 6.8E-42 1.5E-46 346.4 19.4 176 8-192 334-529 (529)
338 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-41 5E-46 351.3 22.2 193 7-206 450-653 (659)
339 COG4167 SapF ABC-type antimicr 100.0 1.9E-41 4.1E-46 295.9 17.9 218 6-223 2-242 (267)
340 KOG0055|consensus 100.0 2.5E-41 5.4E-46 359.0 21.7 208 9-220 988-1213(1228)
341 TIGR01271 CFTR_protein cystic 100.0 3.5E-40 7.5E-45 367.2 27.8 203 8-220 1217-1440(1490)
342 COG4618 ArpD ABC-type protease 100.0 7.7E-41 1.7E-45 327.6 19.8 211 7-222 333-562 (580)
343 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.2E-40 9.2E-45 283.0 20.2 146 11-208 2-157 (157)
344 cd03238 ABC_UvrA The excision 100.0 5.8E-40 1.3E-44 289.2 19.6 151 23-209 8-166 (176)
345 PRK13409 putative ATPase RIL; 100.0 2.3E-40 5.1E-45 339.6 19.5 183 13-207 78-287 (590)
346 TIGR00956 3a01205 Pleiotropic 100.0 7.1E-40 1.5E-44 362.5 24.7 198 23-220 74-300 (1394)
347 COG0488 Uup ATPase components 100.0 6.4E-40 1.4E-44 330.8 22.2 206 7-219 2-239 (530)
348 COG0396 sufC Cysteine desulfur 100.0 5.3E-39 1.1E-43 289.0 24.6 213 7-221 2-234 (251)
349 TIGR00957 MRP_assoc_pro multi 100.0 7.5E-40 1.6E-44 365.3 23.5 206 8-221 636-851 (1522)
350 COG1101 PhnK ABC-type uncharac 100.0 1.2E-39 2.6E-44 290.6 18.8 209 8-216 1-234 (263)
351 KOG0061|consensus 100.0 2.1E-39 4.6E-44 333.5 23.4 213 8-220 25-260 (613)
352 COG4107 PhnK ABC-type phosphon 100.0 1.6E-39 3.4E-44 282.0 16.9 214 4-223 2-244 (258)
353 PLN03140 ABC transporter G fam 100.0 2E-39 4.4E-44 358.9 21.1 198 23-220 178-427 (1470)
354 PLN03232 ABC transporter C fam 100.0 4.8E-39 1E-43 358.4 22.5 202 8-221 614-829 (1495)
355 TIGR01271 CFTR_protein cystic 100.0 1.4E-38 3E-43 354.4 25.7 188 24-220 440-636 (1490)
356 PLN03073 ABC transporter F fam 100.0 1.6E-39 3.4E-44 339.5 16.7 198 6-219 175-430 (718)
357 PLN03130 ABC transporter C fam 100.0 7.5E-39 1.6E-43 358.0 23.1 201 8-221 614-829 (1622)
358 cd03270 ABC_UvrA_I The excisio 100.0 1.8E-37 4E-42 282.9 21.3 188 23-213 8-226 (226)
359 COG4133 CcmA ABC-type transpor 100.0 3.5E-38 7.5E-43 276.1 15.6 185 7-196 1-194 (209)
360 KOG0056|consensus 100.0 1.3E-38 2.8E-43 310.3 14.1 209 8-221 537-762 (790)
361 PTZ00243 ABC transporter; Prov 100.0 1.1E-37 2.4E-42 347.9 23.6 191 23-221 673-871 (1560)
362 COG4136 ABC-type uncharacteriz 100.0 4.3E-38 9.4E-43 267.3 14.4 194 8-204 2-207 (213)
363 COG4778 PhnL ABC-type phosphon 100.0 1.1E-36 2.3E-41 263.3 14.4 199 8-206 4-227 (235)
364 COG0488 Uup ATPase components 100.0 1.1E-35 2.4E-40 300.1 22.3 201 6-219 319-524 (530)
365 cd03271 ABC_UvrA_II The excisi 100.0 5.4E-35 1.2E-39 272.2 18.9 186 24-215 9-261 (261)
366 COG5265 ATM1 ABC-type transpor 100.0 1.6E-35 3.5E-40 285.0 15.3 209 8-221 262-487 (497)
367 cd03278 ABC_SMC_barmotin Barmo 100.0 8.2E-35 1.8E-39 260.5 14.1 158 27-206 14-190 (197)
368 KOG0054|consensus 100.0 3.7E-34 8.1E-39 309.9 21.0 204 6-221 516-732 (1381)
369 KOG0054|consensus 100.0 2.6E-34 5.6E-39 311.1 18.7 205 8-221 1138-1363(1381)
370 PF00005 ABC_tran: ABC transpo 100.0 2.2E-34 4.8E-39 240.7 12.2 123 26-161 1-137 (137)
371 COG1129 MglA ABC-type sugar tr 100.0 4.9E-33 1.1E-37 276.3 21.8 207 5-217 260-487 (500)
372 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.9E-33 4E-38 257.6 14.7 187 9-205 4-234 (243)
373 COG4138 BtuD ABC-type cobalami 100.0 9.1E-34 2E-38 246.2 7.9 203 7-221 2-222 (248)
374 cd03274 ABC_SMC4_euk Eukaryoti 100.0 3E-34 6.4E-39 259.7 2.9 184 9-206 6-204 (212)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 4.1E-32 8.8E-37 245.3 16.8 184 8-208 5-210 (213)
376 cd03273 ABC_SMC2_euk Eukaryoti 100.0 9E-33 1.9E-37 255.3 10.8 188 9-205 6-242 (251)
377 cd03240 ABC_Rad50 The catalyti 100.0 6.1E-32 1.3E-36 243.1 13.0 158 30-206 17-197 (204)
378 PRK00349 uvrA excinuclease ABC 100.0 1.7E-30 3.7E-35 276.8 24.1 126 90-221 792-928 (943)
379 PRK00635 excinuclease ABC subu 100.0 9.8E-30 2.1E-34 281.7 25.0 205 8-220 600-906 (1809)
380 KOG0065|consensus 100.0 4.4E-31 9.6E-36 281.4 12.6 210 8-217 787-1018(1391)
381 COG3845 ABC-type uncharacteriz 100.0 3.3E-29 7.2E-34 245.7 21.3 212 5-217 254-489 (501)
382 TIGR00630 uvra excinuclease AB 100.0 9.8E-29 2.1E-33 262.9 23.8 123 90-218 790-923 (924)
383 cd03276 ABC_SMC6_euk Eukaryoti 100.0 2.8E-29 6.1E-34 224.9 14.8 166 25-208 11-192 (198)
384 KOG0927|consensus 100.0 1.1E-29 2.3E-34 250.8 11.0 202 6-218 387-594 (614)
385 KOG0927|consensus 100.0 5.8E-29 1.3E-33 245.6 13.9 200 8-220 75-309 (614)
386 COG4615 PvdE ABC-type sideroph 100.0 2.4E-29 5.2E-34 240.9 9.1 193 8-213 322-530 (546)
387 COG1245 Predicted ATPase, RNas 100.0 4.2E-28 9.1E-33 235.7 17.1 185 8-205 342-530 (591)
388 cd03275 ABC_SMC1_euk Eukaryoti 100.0 5.2E-29 1.1E-33 229.9 9.4 186 9-206 4-233 (247)
389 COG4178 ABC-type uncharacteriz 100.0 1E-27 2.3E-32 242.6 18.7 186 6-200 390-582 (604)
390 COG4170 SapD ABC-type antimicr 100.0 3E-28 6.5E-33 217.3 11.6 216 7-223 2-251 (330)
391 KOG2355|consensus 99.9 3.2E-26 6.9E-31 203.6 16.4 205 6-219 11-236 (291)
392 KOG0062|consensus 99.9 3E-27 6.4E-32 232.4 10.2 199 9-220 81-285 (582)
393 KOG0062|consensus 99.9 2.8E-26 6.1E-31 225.5 15.4 200 3-211 357-559 (582)
394 cd03280 ABC_MutS2 MutS2 homolo 99.9 6.1E-26 1.3E-30 203.1 12.6 145 26-213 17-172 (200)
395 KOG0066|consensus 99.9 7.9E-26 1.7E-30 218.9 13.8 191 6-209 584-779 (807)
396 KOG0060|consensus 99.9 2.8E-24 6.1E-29 213.9 20.2 193 6-206 431-641 (659)
397 COG1245 Predicted ATPase, RNas 99.9 1.7E-25 3.8E-30 217.5 9.3 181 13-205 79-287 (591)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 6.4E-24 1.4E-28 192.4 13.2 83 126-208 120-211 (213)
399 cd03239 ABC_SMC_head The struc 99.9 1E-22 2.2E-27 179.7 15.1 74 133-206 95-172 (178)
400 cd03227 ABC_Class2 ABC-type Cl 99.9 3.4E-23 7.3E-28 179.6 11.4 139 27-206 12-155 (162)
401 cd03283 ABC_MutS-like MutS-lik 99.9 3.2E-23 6.9E-28 186.0 10.0 146 23-204 14-163 (199)
402 KOG0065|consensus 99.9 1.4E-22 3E-27 216.8 14.1 198 23-220 128-351 (1391)
403 PRK00635 excinuclease ABC subu 99.9 9.3E-22 2E-26 218.7 20.8 127 89-221 1660-1797(1809)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.9 6.8E-23 1.5E-27 186.8 8.3 151 23-214 17-175 (222)
405 cd03241 ABC_RecN RecN ATPase i 99.9 4.6E-22 1E-26 186.6 12.2 77 131-208 169-249 (276)
406 cd03243 ABC_MutS_homologs The 99.9 1.1E-22 2.4E-27 182.2 7.6 156 27-218 20-177 (202)
407 COG0178 UvrA Excinuclease ATPa 99.9 4.2E-21 9E-26 197.3 19.2 126 89-220 783-919 (935)
408 COG2401 ABC-type ATPase fused 99.9 1.5E-21 3.2E-26 188.5 14.0 178 24-211 397-589 (593)
409 PRK00349 uvrA excinuclease ABC 99.9 2.8E-21 6E-26 206.5 16.0 130 89-220 436-585 (943)
410 KOG0064|consensus 99.9 4.8E-21 1E-25 189.1 13.4 178 9-197 482-674 (728)
411 cd03282 ABC_MSH4_euk MutS4 hom 99.9 2.2E-21 4.8E-26 174.8 10.0 139 23-197 16-156 (204)
412 TIGR00630 uvra excinuclease AB 99.9 1E-20 2.2E-25 201.9 16.4 130 89-220 434-583 (924)
413 KOG0066|consensus 99.8 6.3E-22 1.4E-26 192.0 2.9 203 8-216 264-495 (807)
414 cd03242 ABC_RecF RecF is a rec 99.8 3.2E-19 7E-24 166.9 17.6 77 129-209 180-269 (270)
415 cd03284 ABC_MutS1 MutS1 homolo 99.8 1.4E-19 3E-24 164.4 10.2 156 23-219 18-180 (216)
416 KOG0063|consensus 99.8 8.6E-19 1.9E-23 169.9 14.4 180 16-205 343-531 (592)
417 smart00534 MUTSac ATPase domai 99.7 1.2E-18 2.6E-23 154.2 6.3 137 38-211 1-141 (185)
418 TIGR02858 spore_III_AA stage I 99.7 8.6E-18 1.9E-22 157.5 11.2 133 37-219 112-268 (270)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.7 7.2E-17 1.6E-21 146.3 13.4 133 25-197 18-159 (213)
420 TIGR01069 mutS2 MutS2 family p 99.7 3.9E-17 8.4E-22 172.4 9.9 133 29-196 314-449 (771)
421 PRK00064 recF recombination pr 99.7 6.1E-15 1.3E-19 143.6 19.0 77 130-209 271-359 (361)
422 PF02463 SMC_N: RecF/RecN/SMC 99.6 3.2E-16 7E-21 141.4 5.7 73 131-204 135-211 (220)
423 cd03287 ABC_MSH3_euk MutS3 hom 99.6 8.6E-15 1.9E-19 133.6 12.5 139 23-197 18-159 (222)
424 PRK00409 recombination and DNA 99.6 1.5E-15 3.3E-20 160.6 7.8 145 30-211 320-469 (782)
425 PTZ00132 GTP-binding nuclear p 99.6 1.5E-15 3.2E-20 136.6 5.7 45 136-180 156-205 (215)
426 KOG0063|consensus 99.6 5.9E-15 1.3E-19 143.5 9.1 171 34-206 98-288 (592)
427 PRK08533 flagellar accessory p 99.6 4.5E-14 9.8E-19 129.4 13.3 159 9-205 8-184 (230)
428 TIGR00634 recN DNA repair prot 99.6 1.3E-14 2.7E-19 149.0 10.1 77 131-208 439-519 (563)
429 TIGR00618 sbcc exonuclease Sbc 99.5 1.6E-14 3.5E-19 157.6 11.1 82 126-207 944-1036(1042)
430 PHA02562 46 endonuclease subun 99.5 1.3E-14 2.8E-19 148.0 8.6 79 129-209 465-555 (562)
431 cd01128 rho_factor Transcripti 99.5 7.2E-14 1.6E-18 129.6 11.5 166 30-209 10-211 (249)
432 PRK07721 fliI flagellum-specif 99.5 1.1E-13 2.4E-18 137.7 12.7 168 23-217 146-340 (438)
433 cd01124 KaiC KaiC is a circadi 99.5 3E-13 6.5E-18 118.2 12.5 141 39-205 2-163 (187)
434 PRK10869 recombination and rep 99.5 1.1E-13 2.3E-18 141.8 10.6 76 132-208 430-509 (553)
435 PRK06793 fliI flagellum-specif 99.5 1.5E-13 3.2E-18 136.2 10.4 169 8-214 130-305 (432)
436 PF13304 AAA_21: AAA domain; P 99.5 1E-13 2.2E-18 122.6 8.3 67 129-195 233-302 (303)
437 PRK03918 chromosome segregatio 99.5 1.2E-13 2.7E-18 147.9 10.4 80 127-206 783-868 (880)
438 cd03286 ABC_MSH6_euk MutS6 hom 99.5 1.8E-13 3.9E-18 124.7 9.9 139 23-197 17-158 (218)
439 cd00820 PEPCK_HprK Phosphoenol 99.5 8E-14 1.7E-18 113.2 6.3 67 23-98 2-77 (107)
440 COG0178 UvrA Excinuclease ATPa 99.5 1E-12 2.2E-17 136.0 15.6 112 120-233 467-588 (935)
441 PRK13695 putative NTPase; Prov 99.5 2.1E-14 4.5E-19 125.5 2.6 150 38-212 2-156 (174)
442 PRK10246 exonuclease subunit S 99.4 6.4E-13 1.4E-17 145.1 11.0 80 127-206 944-1032(1047)
443 PRK01156 chromosome segregatio 99.4 1.6E-12 3.5E-17 139.9 13.4 78 128-205 797-883 (895)
444 PRK13830 conjugal transfer pro 99.4 1.2E-11 2.6E-16 132.1 16.9 69 148-216 650-729 (818)
445 TIGR02168 SMC_prok_B chromosom 99.4 1.2E-12 2.6E-17 142.9 8.1 78 127-205 1084-1165(1179)
446 TIGR02788 VirB11 P-type DNA tr 99.3 3.3E-12 7.2E-17 121.9 9.4 144 29-219 137-280 (308)
447 TIGR00606 rad50 rad50. This fa 99.3 3.6E-12 7.9E-17 142.1 8.9 70 128-197 1195-1275(1311)
448 cd01120 RecA-like_NTPases RecA 99.3 5E-12 1.1E-16 106.5 7.5 130 38-195 1-140 (165)
449 PRK06995 flhF flagellar biosyn 99.3 6.8E-12 1.5E-16 126.0 9.5 149 25-190 245-400 (484)
450 COG3910 Predicted ATPase [Gene 99.3 2E-11 4.4E-16 107.9 11.1 82 127-209 124-206 (233)
451 PRK02224 chromosome segregatio 99.2 1.7E-11 3.8E-16 131.6 9.5 79 129-207 778-869 (880)
452 TIGR02169 SMC_prok_A chromosom 99.2 1.8E-11 3.9E-16 134.0 8.7 78 128-206 1070-1151(1164)
453 PRK06067 flagellar accessory p 99.2 1.4E-10 3.1E-15 105.9 12.0 141 32-194 21-167 (234)
454 cd01131 PilT Pilus retraction 99.1 2.8E-10 6E-15 101.9 10.0 119 38-205 3-122 (198)
455 TIGR02655 circ_KaiC circadian 99.1 5.5E-12 1.2E-16 127.4 -4.6 151 32-205 17-190 (484)
456 TIGR03238 dnd_assoc_3 dnd syst 99.1 1.1E-10 2.4E-15 116.4 4.6 49 24-74 20-69 (504)
457 cd02023 UMPK Uridine monophosp 99.0 1.6E-10 3.4E-15 102.8 4.7 113 38-166 1-114 (198)
458 TIGR01026 fliI_yscN ATPase Fli 99.0 4E-09 8.6E-14 105.3 13.8 169 23-218 151-346 (440)
459 smart00382 AAA ATPases associa 99.0 4.9E-09 1.1E-13 84.5 11.8 118 35-191 1-125 (148)
460 TIGR00611 recf recF protein. A 99.0 5.8E-10 1.3E-14 109.0 6.8 63 131-196 274-345 (365)
461 COG0419 SbcC ATPase involved i 99.0 1.4E-09 3.1E-14 117.6 10.2 79 128-206 811-897 (908)
462 TIGR03881 KaiC_arch_4 KaiC dom 99.0 3.5E-10 7.6E-15 102.7 3.1 26 32-57 16-41 (229)
463 PRK07196 fliI flagellum-specif 99.0 1.2E-09 2.6E-14 108.6 7.2 80 23-103 143-240 (434)
464 cd01130 VirB11-like_ATPase Typ 98.9 1.4E-09 3E-14 96.3 6.1 77 25-101 14-98 (186)
465 PRK06002 fliI flagellum-specif 98.9 4.4E-09 9.5E-14 104.8 9.7 77 7-85 138-230 (450)
466 cd01125 repA Hexameric Replica 98.9 5.7E-09 1.2E-13 95.8 9.5 47 146-193 107-160 (239)
467 PRK13898 type IV secretion sys 98.9 1E-07 2.2E-12 101.9 19.8 50 146-195 638-688 (800)
468 PRK05399 DNA mismatch repair p 98.9 1.2E-08 2.7E-13 109.5 12.6 135 24-199 596-737 (854)
469 PRK13891 conjugal transfer pro 98.8 5.2E-08 1.1E-12 104.8 15.1 55 143-197 680-735 (852)
470 TIGR02680 conserved hypothetic 98.8 5.6E-09 1.2E-13 116.9 7.8 64 127-193 1242-1317(1353)
471 COG4637 Predicted ATPase [Gene 98.8 1.6E-07 3.5E-12 89.1 16.1 66 131-197 269-336 (373)
472 PRK14079 recF recombination pr 98.8 1.1E-08 2.4E-13 99.4 7.7 78 131-214 262-348 (349)
473 TIGR01420 pilT_fam pilus retra 98.8 5.2E-08 1.1E-12 94.5 11.0 119 34-201 120-239 (343)
474 PLN03210 Resistant to P. syrin 98.7 3.8E-08 8.3E-13 109.0 10.8 143 29-205 200-349 (1153)
475 cd01876 YihA_EngB The YihA (En 98.7 4E-08 8.6E-13 82.5 7.0 135 39-178 2-169 (170)
476 TIGR00152 dephospho-CoA kinase 98.7 3E-08 6.5E-13 87.7 5.4 69 136-206 61-132 (188)
477 PRK06315 type III secretion sy 98.6 1.2E-07 2.7E-12 94.5 8.7 110 23-134 152-293 (442)
478 TIGR02903 spore_lon_C ATP-depe 98.6 3.4E-07 7.4E-12 95.3 12.2 115 35-177 174-291 (615)
479 PF00488 MutS_V: MutS domain V 98.6 1.7E-06 3.8E-11 79.7 15.4 128 25-196 32-170 (235)
480 PRK13873 conjugal transfer ATP 98.6 7.6E-07 1.7E-11 95.5 14.5 61 147-207 632-703 (811)
481 PRK00454 engB GTP-binding prot 98.6 1.1E-07 2.4E-12 83.4 6.1 63 115-181 128-195 (196)
482 PRK09825 idnK D-gluconate kina 98.5 6.6E-08 1.4E-12 85.2 3.8 35 35-73 2-36 (176)
483 TIGR00416 sms DNA repair prote 98.5 3.4E-07 7.5E-12 92.0 9.1 139 32-208 90-247 (454)
484 PRK09270 nucleoside triphospha 98.5 1.7E-07 3.6E-12 85.6 5.8 65 34-99 31-104 (229)
485 TIGR00554 panK_bact pantothena 98.5 1.2E-07 2.7E-12 89.9 4.8 66 36-102 62-137 (290)
486 cd01122 GP4d_helicase GP4d_hel 98.5 6.7E-06 1.4E-10 76.4 16.3 150 24-191 18-190 (271)
487 cd00009 AAA The AAA+ (ATPases 98.5 3.9E-07 8.5E-12 74.2 6.9 109 35-193 18-131 (151)
488 TIGR03880 KaiC_arch_3 KaiC dom 98.5 2E-06 4.4E-11 77.9 12.1 56 149-205 106-177 (224)
489 PF13558 SbcCD_C: Putative exo 98.5 2.8E-07 6E-12 72.6 5.4 51 127-177 27-90 (90)
490 PRK07594 type III secretion sy 98.5 2E-07 4.4E-12 92.8 5.7 64 8-73 129-192 (433)
491 cd01136 ATPase_flagellum-secre 98.4 4.5E-07 9.8E-12 87.3 6.9 58 13-72 48-105 (326)
492 PRK09862 putative ATP-dependen 98.4 2.1E-07 4.5E-12 94.5 4.8 62 11-74 187-248 (506)
493 PRK14722 flhF flagellar biosyn 98.4 7.3E-07 1.6E-11 87.4 8.2 70 24-104 125-194 (374)
494 PRK08149 ATP synthase SpaL; Va 98.4 5.9E-07 1.3E-11 89.4 7.7 62 23-85 139-216 (428)
495 PRK10416 signal recognition pa 98.4 2.3E-07 4.9E-12 89.2 4.5 62 34-95 112-188 (318)
496 TIGR00235 udk uridine kinase. 98.4 1.2E-07 2.6E-12 85.1 1.8 29 34-62 4-32 (207)
497 TIGR02546 III_secr_ATP type II 98.4 5.9E-07 1.3E-11 89.5 6.6 76 14-91 125-215 (422)
498 PRK14721 flhF flagellar biosyn 98.4 2E-06 4.2E-11 85.6 9.8 62 33-105 188-249 (420)
499 cd01854 YjeQ_engC YjeQ/EngC. 98.3 8.6E-07 1.9E-11 84.0 6.7 76 26-102 152-243 (287)
500 cd01121 Sms Sms (bacterial rad 98.3 2.6E-06 5.5E-11 83.7 10.0 137 32-207 78-234 (372)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-65 Score=451.87 Aligned_cols=219 Identities=31% Similarity=0.511 Sum_probs=204.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----------cCe
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------KKQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------~~~ 76 (321)
+||+++|++|+||+ ..+|++||++|++||+++|+||||||||||||||+||.+|++|+|.++|.+ +++
T Consensus 1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 47999999999999 779999999999999999999999999999999999999999999999953 267
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+|+|||++++||.+||.||+.+.. ...+.+++++++++.++++.+++.+ .+.+|.+|||||||||||||||+.+|+++
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 999999999999999999998865 3467888899999999999999975 79999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccH
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSL 227 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l 227 (321)
++|||||+|||+...++++.+++++++|+|.+++||++.++.. ||||++|++|+++++|+|++++.++..+..
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~ 232 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHH
Confidence 9999999999999999999999999999999999999999988 999999999999999999999877554433
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-61 Score=435.08 Aligned_cols=220 Identities=33% Similarity=0.502 Sum_probs=206.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|+||+|++ +.+++|+||+|++||+++++|||||||||+||||.+|++|++|+|.++|++. ++||
T Consensus 1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 7999999999998 7799999999999999999999999999999999999999999999999864 6899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc---ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH---FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||-|...+||++||.||+.+...+.+.++++.++++++++++++++. .+|+|++|||||||||.+||||+.+|++++
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 99999999999999999999988888888899999999999999963 589999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHH
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~ 229 (321)
+||||++|||.+|.++.+.+.++.+ -|+|||++|||++|+-. +|||++|++|+++..++|++++.++..+.+++
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~ 234 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVED 234 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHH
Confidence 9999999999999999999999975 59999999999999977 99999999999999999999998766544444
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-60 Score=438.43 Aligned_cols=217 Identities=28% Similarity=0.429 Sum_probs=204.6
Q ss_pred eEEEEeEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSK---LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~---~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
||++++++|.|+.+ ...+|+||||+|++||++||+|+||||||||+||+.+|.+|++|+|.++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 69999999999862 24699999999999999999999999999999999999999999999999653
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++||++||+++++...||.+|++|+..+.+.++++.++++.++++++++++ .+++|.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 689999999999999999999999999999999999999999999999976 68999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhccc
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNM 224 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~ 224 (321)
++|++|||||+|||...+.++++|++++ +-|.||+++||.|+.++. |||+++|++|++++.|+..+++.++..
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 9999999999999999999999999998 459999999999999988 999999999999999999999877543
No 4
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-60 Score=415.51 Aligned_cols=227 Identities=27% Similarity=0.484 Sum_probs=212.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||++.+++|+|+.. .++++||||++++||++||+|||||||||+||+|++++.|++|.|+++|.+. ++||.
T Consensus 1 Ml~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 68999999999983 4599999999999999999999999999999999999999999999998653 78999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+|.+..+|..||++||+.|+++++++...+.+++.+++.+.+++.. .|++++++|.||||||+|||||+++|++++|||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 9988999999999999999999999999999999999999999975 799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHHHHhh
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~~~~~ 235 (321)
||||||..+++.+.+.+++++++|++||++||++++++. |||++++++|++++.|+++++.......++++.|....
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~f~~~l 237 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFAL 237 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHHHHHHHhh
Confidence 999999999999999999999899999999999999987 99999999999999999999987766677777765543
No 5
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-58 Score=435.24 Aligned_cols=213 Identities=40% Similarity=0.668 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 7 CAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
.+++++|++|+|+ + +.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 3 ~~i~~~~l~k~~~~~--~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 3 EVIEVRNLTKKYGGD--KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred ceeeecceEEEeCCC--CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 4589999999999 6 6799999999999999999999999999999999999999999999998653 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+|+.+|++||+.|.+.+++.+....+++++++++.+++.. .++++++||+|||||++||+||+++|+++||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999998765555678899999999975 5788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g-~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.++.+++++|++++++| +||++|||.+++++. ||||++|++|++++.|+++++...
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999876 899999999999988 999999999999999999987654
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-58 Score=416.75 Aligned_cols=215 Identities=31% Similarity=0.426 Sum_probs=201.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
.++.|++++++++||+ +.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|.+.
T Consensus 5 ~~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 5 PEPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred CcceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 3678999999999999 7799999999999999999999999999999999999999999999998764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++|++||+.++|..+||+||+.|+.+-+ +++++..++.+..-++.+|+.. .+++|.+|||||++|++||||++.
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 67999999999999999999999987665 4677788888888899999964 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++++||||+||||.+...|-++|+++++. |.|++++|||++.+.. |||++++.+|+|++.|+++++.+.
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999854 9999999999999977 999999999999999999999763
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.2e-58 Score=425.52 Aligned_cols=221 Identities=29% Similarity=0.439 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++++++|++++|++ +.+++|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|++. +++
T Consensus 1 ~~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 1 MMLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred CeeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 36999999999998 7799999999999999999999999999999999999999999999999764 689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
|||||.+...+.+||+|.+.++...+ ....++.++.++++++.+++.+ .+|.+.+|||||||||.|||||+++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 99999998888999999998764432 2223344557888999999976 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDV 230 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~ 230 (321)
+|+||||||.||+.++.++++++++++ ++|+|||+++||++.+.+ ||++++|++|++++.|+|+++.+. +.+.++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~---e~l~~V 235 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE---ENLREV 235 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH---HHHHHH
Confidence 999999999999999999999999998 569999999999999976 999999999999999999988754 456666
Q ss_pred HH
Q psy106 231 FL 232 (321)
Q Consensus 231 ~~ 232 (321)
|.
T Consensus 236 yg 237 (258)
T COG1120 236 YG 237 (258)
T ss_pred hC
Confidence 53
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-58 Score=437.74 Aligned_cols=215 Identities=31% Similarity=0.459 Sum_probs=204.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGF 79 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~ 79 (321)
.+|+++|++|+||+ ..+++++||+|++||+++|+||||||||||||+|+||.+|++|+|.++|++. +.||+
T Consensus 2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 47999999999998 3399999999999999999999999999999999999999999999999764 78999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|||+.++||.|||+||+.|+.+..+.++++.++++.+..+.+++++ ++++|.+|||||||||||||||+++|++++|||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 9999999999999999999999999889999999999999999986 799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|+|+||...+..+...|+++.+ -|.|+|.+|||..|+.. +||+++|++|+|...|+|.+++.++.
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 9999999999999999999975 49999999999999987 99999999999999999999987654
No 9
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3e-57 Score=430.76 Aligned_cols=214 Identities=35% Similarity=0.608 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
.++|+++|++|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 468999999999987 6799999999999999999999999999999999999999999999998753 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++++|+.||+.+.+..++.+..+..+++.++++.+++.. .++++++||+|||||++||+||+++|++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999999998877777665666677888999999865 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.+++.++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 163 DEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999998779999999999999987 999999999999999999998654
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-58 Score=440.42 Aligned_cols=217 Identities=33% Similarity=0.491 Sum_probs=202.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
++.++++|++|+||+ ..+++|+||+|++||+++|+||||||||||||||+|+..|++|+|.++|++. +.||
T Consensus 3 ~~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 3 KPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred CceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 467999999999997 7799999999999999999999999999999999999999999999999874 7899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
+|||+.++||+|||.||+.|+.+..+ .+.+++++++.+++++++++. .++++.+|||||||||||||||+.+|++|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 99999999999999999999988544 445668889999999999976 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhccc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNM 224 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~ 224 (321)
|||.|+||..-+.++...++++. +.|+|.|++|||.+|+.. +|||++|++|+|...|+|+++...+..
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 99999999999999999999987 569999999999999976 999999999999999999999887543
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-58 Score=415.68 Aligned_cols=202 Identities=31% Similarity=0.463 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQ 82 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q 82 (321)
.++++++++|.|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|... ..+|||||
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 46899999999998 7799999999999999999999999999999999999999999999999753 68999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.++|++||.||+.++....+.+.++.++++.++++.+++.. .+++|++|||||||||+|||||+.+|++|+||||++
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999999988877677777788999999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEE
Q psy106 162 GIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILL 210 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~ 210 (321)
+||..++..+.+.+.++. +.++||+++|||++|+-. +|||++|.+ |+|.
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999987 569999999999999977 999999999 4453
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-57 Score=414.65 Aligned_cols=220 Identities=30% Similarity=0.444 Sum_probs=190.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGF 79 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~ 79 (321)
+++|+++|++++|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+. .+|||
T Consensus 2 ~~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 2 MPMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred CcEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 4679999999999973 599999999999999999999999999999999999999999999988642 57999
Q ss_pred EcCCCCCC--CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 80 MPQQISLY--PEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 80 v~Q~~~l~--~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
|||...+. ..+||+|.+.++...+ +...++.++.++++++.+++.+ .++++++|||||+|||.|||||+++|+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 99976443 2369999998753221 2222334678899999999976 699999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
+|+|||||+|+|+.++..|+++|++++++|+||+++|||++.+.. ||+|+.|+ +++++.|+++++.+. +.+...|
T Consensus 160 lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~---~~l~~~~ 235 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE---ENLEKAF 235 (254)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH---HHHHHHh
Confidence 999999999999999999999999999789999999999999966 99999997 678899999988653 3444444
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-56 Score=405.92 Aligned_cols=203 Identities=30% Similarity=0.439 Sum_probs=185.3
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
|++++|++|.|+.+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.+.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 578999999997532 3699999999999999999999999999999999999999999999998542
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-cc-CCCCccChHHHHHHHHHHHHhcC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK-RKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~-~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++||||||+.+|.|++||.||+.++..+.+.+..+.+++++.+++.+++.+ .+ ++|.+|||||||||||||||+++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999887777665456677888999999974 44 88999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEE
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILL 210 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~ 210 (321)
|+++++||||.+||+.+.++++++++++++ .|+|||++|||.+.+..|||++.|++|++.
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999985 599999999999999999999999999943
No 14
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.9e-56 Score=427.56 Aligned_cols=214 Identities=34% Similarity=0.575 Sum_probs=196.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
.++|+++|++|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 39 ~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred ceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 357999999999998 6799999999999999999999999999999999999999999999998752 569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|+.||+.+....++.+..+..++++.+++.+++.. .++++++||||||||++||+||+++|+++||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiL 196 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998776666555555566778889999975 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.++..++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 197 DEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 197 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999998789999999999999977 999999999999999999998654
No 15
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-55 Score=426.39 Aligned_cols=219 Identities=29% Similarity=0.453 Sum_probs=201.8
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------C
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------K 75 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~ 75 (321)
|.++++|+++|++|+|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 1 ~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 78 (351)
T PRK11432 1 MTQKNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 (351)
T ss_pred CCCCcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 345678999999999987 6699999999999999999999999999999999999999999999998753 6
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++||+||++.+|+++||+||+.|....++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 79999999999999999999999877666666667788899999999975 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||||++||+..+.++.+.|+++.+ .|+|+|++|||++++.. |||+++|++|+++..|+++++..++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999975 49999999999999976 99999999999999999999987643
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-56 Score=400.82 Aligned_cols=222 Identities=25% Similarity=0.427 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
+||+++||++.|+++ +.+|+||||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.+.
T Consensus 2 ~~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 589999999999433 6799999999999999999999999999999999999999999999998542
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYG--------LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~--------~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++|||+||++++.+.+||.+|+..+. .+.+...++.+..+.++++.+++.+ .-++..+|||||||||+|||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 57999999999999999999998642 2345555555677778899999854 67889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||+++|+++|.|||+++|||.+.+.+++.|++++ ++|.|+|++.|+++.+.+ |||++-|++|+|+++|+++++.+
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~--- 237 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD--- 237 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH---
Confidence 9999999999999999999999999999999998 569999999999999966 99999999999999999998643
Q ss_pred cccHHHHHHH
Q psy106 224 MKSLEDVFLL 233 (321)
Q Consensus 224 ~~~l~~~~~~ 233 (321)
..+.+.|..
T Consensus 238 -~~~~~iYg~ 246 (258)
T COG3638 238 -EALDEIYGN 246 (258)
T ss_pred -HHHHHHhcc
Confidence 345555543
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-55 Score=426.20 Aligned_cols=215 Identities=26% Similarity=0.434 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 7 CAIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 7 ~~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
++|+++|++++| ++ +.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ++||
T Consensus 2 ~~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 2 AGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred CEEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 369999999999 66 6699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+|+++||+||+.|.....+.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999999876656666666677889999999975 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||++||+..+..+++.|+++.++ |+|+|++|||++++.. ||++++|++|+++..|+++++.++..
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 999999999999999999998754 9999999999999976 99999999999999999999977643
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.4e-55 Score=422.55 Aligned_cols=215 Identities=27% Similarity=0.418 Sum_probs=196.0
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++|+|+++ ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 68999999999631 24699999999999999999999999999999999999999999999998642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++|||+||++.+++.+||.||+.++....+.+..+.++++.++++.+++.+ .++++.+|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 469999999999999999999998776656666666778889999999975 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
+|||||||++|||.++..++++|++++++ |.|||++||+++.+.. |||+++|++|++++.|+++++....
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 99999999999999999999999999854 9999999999999976 9999999999999999999987653
No 19
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.1e-55 Score=422.97 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=199.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
.++|+++|++|+|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|++. +++|
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred CcEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 457999999999987 6699999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+||.+||.||+.|.....+.+..+.+++++++++.++++. .++++.+|||||||||+|||||+.+|+++|||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999876666666666778899999999976 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||++||+..+.++++.|+++.+ .|.|+|++|||++++.. |||+++|++|++++.|+++++.+.+.
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999875 49999999999999976 99999999999999999999987643
No 20
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-56 Score=403.11 Aligned_cols=215 Identities=27% Similarity=0.495 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEc
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMP 81 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~ 81 (321)
+++++++|+|+||+ +.|++|+||++++|+++|++|||||||||++|+|+|+++|++|+|.++|.+. .+|||+|
T Consensus 1 ~~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 1 MALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred CceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 36899999999999 7799999999999999999999999999999999999999999999999764 5899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
.+..+|+.+||.|.+.|++.+.+++..+.++.++.+++.+++.. ..+++.+||.|++|++.+..|++|+|+++|||||+
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999999999999999999999999999999999865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||.+.+.+.+.+.+++++|.|||+|||.|+.++. ||++++|++|+.+.+|+.+++.+.+.
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 9999999999999999999999999999999999988 99999999999999999999987543
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-56 Score=412.58 Aligned_cols=217 Identities=30% Similarity=0.487 Sum_probs=200.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc---cc-------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT---SK-------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~---~~-------~~ 76 (321)
+||+++|++|.|++ ..+++|||++|++||.+|++||||||||||||+|+||+.|++|.|.++|+ +. ++
T Consensus 1 m~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 1 MSIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred Cceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 36999999999999 77999999999999999999999999999999999999999999999998 42 68
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
||||||+..+|+.|||.+|+.|+..... .+..+.+.++.++++.+.++. .+++|.+|||||||||||||||+.+|++
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 9999999999999999999999886542 235567888999999999987 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccc
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMK 225 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~ 225 (321)
|+||||+++||...++++...|+++.++ |.|.+++|||.+|+.. ||||++|++|+|...|+++++...+...
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999855 9999999999999977 9999999999999999999998765543
No 22
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.5e-55 Score=412.66 Aligned_cols=214 Identities=33% Similarity=0.577 Sum_probs=194.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
..+|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 2 ~~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred CcEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 457999999999987 6699999999999999999999999999999999999999999999998642 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|+.||+.+....++.+..+..++++.+++.+++.. .++++++||||||||++|||||+++|+++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999987665555444444566777889999875 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.++..++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++...
T Consensus 160 DEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 160 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999998789999999999999976 999999999999999999988654
No 23
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-55 Score=396.22 Aligned_cols=212 Identities=28% Similarity=0.414 Sum_probs=194.0
Q ss_pred cceEEEEeEEEEeCCCCCc----eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------
Q psy106 6 KCAIRVENAYKRHSSKLPY----VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------- 73 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~----iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------- 73 (321)
++|++++|+++.|++ .. +|++|||+|.+||++||+||||||||||.|+|+|+.+|++|+|.++|..
T Consensus 1 ~~~l~v~nl~~~y~~--~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 1 MTLLSVRNLSIVYGG--GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK 78 (252)
T ss_pred CceEEEeceEEEecC--CcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch
Confidence 368999999999988 45 9999999999999999999999999999999999999999999999953
Q ss_pred --cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHH
Q psy106 74 --KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 74 --~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL 147 (321)
.+.|.+|||+| ++.|..||.+.+.-+...++.++.+ +++.++++.+++.. ++++|.+|||||+||+||||||
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh
Confidence 25699999998 5889999999998777766665443 44888999999974 6999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+.+|++||||||||+||+..+.++++++.++++ .+.|.|++|||+..+++ |||+++|++|++++.++.+++.+.
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999984 59999999999999998 999999999999999999998765
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-55 Score=384.74 Aligned_cols=206 Identities=28% Similarity=0.436 Sum_probs=195.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~ 75 (321)
||+++|++|.|+++ +.+|+|+||+|++||++-++||||||||||+|+|++..+|++|+|+++|.+. +
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 68999999999987 6799999999999999999999999999999999999999999999998763 6
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||||..+.+++||+||++|.....+.+..++++++.++++.++|.+ .+..|.+|||||||||+||||++++|++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 89999999999999999999999999999999999999999999999976 67889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
|.||||.+|||....++++++.+++..|+||+|+|||.+.+.+ -.|++.+++|+++.+..
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999988 67999999999987654
No 25
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.7e-54 Score=419.05 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=197.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc--cEEEECCccc-------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG--GNIHLSITSK-------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~--G~I~~~g~~~-------~~ig 78 (321)
.|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+. ++||
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4899999999987 669999999999999999999999999999999999999999 9999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+|+.+||+||+.|....++.+..+.+++++++++.++++. .++++.+|||||||||+|||||+.+|++||||
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999877666666666778889999999976 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC--CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAES--GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~--g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||+|||+..+.++++.|+++.++ |+|+|++|||++++.. |||+++|++|+++..|++++++...
T Consensus 163 EP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 163 EPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999865 8999999999999976 9999999999999999999998764
No 26
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=397.94 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=198.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----------cCe
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------KKQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------~~~ 76 (321)
+|++++|++++|+++ ..+|+++||+|++||+++|+||||||||||+++++|+++|++|+|.++|.+ +++
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 579999999999875 579999999999999999999999999999999999999999999998864 267
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+|||||+|. .+..-||.|.++|+....+.+.+++++++.++++.+++.. .++++.+|||||||||+||.+|+++|++|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 999999983 3344599999999999889988889999999999999976 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||||||||.+++++++++++++++ |+|+|++|||++++.. |||+++|++|+++.+|+|+++.++
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999866 7999999999999976 999999999999999999888764
No 27
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.8e-54 Score=419.73 Aligned_cols=217 Identities=28% Similarity=0.417 Sum_probs=199.2
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeE
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQL 77 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~i 77 (321)
+.++|+++|++++|++ ..+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|.+. +++
T Consensus 11 ~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 11 LSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 3568999999999987 6699999999999999999999999999999999999999999999998753 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+||.+||.||+.|.....+.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998776555555566677888999999975 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||++||+..+..+.+.|+++.+ .|.|+|++|||++++.. |||+++|++|+++..|++++++.+..
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999999999999999975 49999999999999976 99999999999999999999987643
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-55 Score=389.59 Aligned_cols=216 Identities=29% Similarity=0.433 Sum_probs=196.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-----cEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-----GNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-----G~I~~~g~~~------ 74 (321)
.+.++++||++.||+ +.+|+|||++|++++++||+|||||||||+||++..+..... |+|.++|++.
T Consensus 5 ~~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 467999999999998 679999999999999999999999999999999998876654 9999998763
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++||+|||.|+.|| +|++||+.|+.++++...++.++.++..++...|. .+++.+..||||||||++||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 68999999999999 89999999999999887777777888777776652 25778889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||+.+|++||||||||+|||.+..++-++|.+|+ +.-||+++||+|..+.+ +|+.+++..|++++.|+.++++.++.
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 99999999999999999999999999999999998 46999999999999988 99999999999999999999987755
Q ss_pred cc
Q psy106 224 MK 225 (321)
Q Consensus 224 ~~ 225 (321)
.+
T Consensus 241 ~~ 242 (253)
T COG1117 241 HK 242 (253)
T ss_pred HH
Confidence 43
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-54 Score=393.58 Aligned_cols=210 Identities=29% Similarity=0.402 Sum_probs=188.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~~ 76 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999987 5699999999999999999999999999999999999999999999988531 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++.+++.+|+.||+.+....+ +....+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|+++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998765433 2344445566778889999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+++.|+++++ .|+|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999986 48999999999999976 99999999999999999888753
No 30
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.5e-54 Score=407.80 Aligned_cols=211 Identities=32% Similarity=0.538 Sum_probs=194.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
+++++|++|+|++ +.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 5899999999987 6799999999999999999999999999999999999999999999998653 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++++|+.||+.+....++.+.++..++++++++.+++.. .++++++||||||||++|||||+++|+++||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE 159 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999998877776655555667888999999975 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+||||.+++.++++++++++ ++|||++||++++++. |||+++|++|++++.|+++++...
T Consensus 160 Pt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999865 7999999999999987 999999999999999999998653
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.6e-54 Score=415.72 Aligned_cols=213 Identities=30% Similarity=0.449 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. +++||+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999987 6699999999999999999999999999999999999999999999998753 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 81 PQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||++.+|+.+|+.||+.+..... +.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL 159 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999876542 2344555677888999999975 689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||||+|||+..+..+++.|++++++ |+|+|++|||++++.. |||+++|++|++++.|++++++...
T Consensus 160 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999865 8999999999999977 9999999999999999999997654
No 32
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-54 Score=392.15 Aligned_cols=212 Identities=29% Similarity=0.439 Sum_probs=189.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 5899999999987 6699999999999999999999999999999999999999999999998642 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||++.+++.+|+.||+.+.....+. ...+..+.+..+++.+++.. .++++.+||+|||||++|||||+.+|++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 159 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999876543322 23334456778889999865 688899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+|||+.+++.++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999986 48999999999999876 999999999999999999887643
No 33
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-54 Score=416.58 Aligned_cols=213 Identities=26% Similarity=0.465 Sum_probs=195.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 6999999999987 6699999999999999999999999999999999999999999999998653 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||.||+.+.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999998766555555555677888999999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|+|||+.+++.+++.|+++.+ .|.|+|++|||++++.. ||++++|++|+++..|+++++....
T Consensus 161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999875 49999999999999976 9999999999999999999987654
No 34
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.2e-54 Score=387.39 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=181.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~ 75 (321)
||+++|++++|+++.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5899999999965323599999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999999999999988765544444444566788899999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
||||||+|||+.+++.+.++|++++++|.|||++|||++++.. ||++++|++|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998779999999999999976 999999999974
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-54 Score=387.44 Aligned_cols=208 Identities=31% Similarity=0.517 Sum_probs=188.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEe
Confidence 578999999987 5699999999999999999999999999999999999999999999988542 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++|||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999999988765555544445567788899999875 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 160 TSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||+.+++.++++|++++++ |+|||++||+++++.. |||+++|++|+++..++++++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999865 8999999999999976 999999999999999887754
No 36
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-55 Score=387.45 Aligned_cols=222 Identities=29% Similarity=0.476 Sum_probs=200.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
+.++.++|+.|+|++ +++++++||+|++||++|++|||||||||.+.|++|+++|++|.|.+++.+. .
T Consensus 2 ~~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 2 MSTLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred CcEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357999999999999 7799999999999999999999999999999999999999999999998764 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ--QIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
.|||+||+++.|..+||.||+.........+.+ +.+.+.+.+++.+.+.+ .+++..+||||||+|+.|||||+.+|+
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 599999999999999999999887776553333 44455789999999987 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
+++||||++|+||.+..++.++++.|+++|..|+++-|+..|.-. |||.++|++|++.++|+|+++.++ +.+...|
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n---~~Vr~~Y 236 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN---EDVRRVY 236 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC---hhhhhhc
Confidence 999999999999999999999999999999999999999999855 999999999999999999999765 4455555
Q ss_pred H
Q psy106 232 L 232 (321)
Q Consensus 232 ~ 232 (321)
.
T Consensus 237 L 237 (243)
T COG1137 237 L 237 (243)
T ss_pred c
Confidence 4
No 37
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-53 Score=411.09 Aligned_cols=214 Identities=27% Similarity=0.424 Sum_probs=193.8
Q ss_pred eEEEEeEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~--~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++++|++ ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 6899999999972 125699999999999999999999999999999999999999999999998642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++|||+||++.+++.+|+.||+.+....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 469999999999999999999998766656555555667888999999975 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||||||+|||+.++..++++|+++++ .|+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999975 49999999999999976 999999999999999999998754
No 38
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-53 Score=415.13 Aligned_cols=216 Identities=30% Similarity=0.486 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
.++|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|++. +++|
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 467999999999987 6699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+|+.+||.||+.|.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD 174 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999998876655566666778889999999975 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||++||+..+..+.+.|+++.+ .|.|+|++|||++++.. |||+++|++|+++..|+++++..+..
T Consensus 175 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 175 EPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999998864 59999999999999976 99999999999999999999987543
No 39
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.9e-53 Score=387.96 Aligned_cols=222 Identities=31% Similarity=0.465 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 5899999999987 6699999999999999999999999999999999999999999999988642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++.+|+.||+.+....++....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|+++||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998889999999987655544444444556778888889865 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
||+|||+.+++.+++.|+++++ +|.|||++||+++++..||++++|++|++++.++++++........+.+.|
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEAAF 232 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHH
Confidence 9999999999999999999874 689999999999999779999999999999999998886653323444444
No 40
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.5e-54 Score=405.98 Aligned_cols=204 Identities=33% Similarity=0.579 Sum_probs=187.2
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEEcCCCCCC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFMPQQISLY 87 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v~Q~~~l~ 87 (321)
|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||+||++.++
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 46877 6799999999999999999999999999999999999999999999998653 4699999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~ 166 (321)
+.+|+.||+.+....++.+..+.+++++++++.+++.. .++++++|||||||||+||+||+++|++|||||||+||||.
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 158 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 99999999998777666655555667888999999975 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 167 IAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 167 ~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++.++++|++++++|+|||++||++++++. ||++++|++|++++.|+++++...
T Consensus 159 ~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999998779999999999999987 999999999999999999988654
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-53 Score=384.30 Aligned_cols=203 Identities=34% Similarity=0.517 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 578999999987 6699999999999999999999999999999999999999999999988653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++++|+.||+.+....++......++++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999987654444444444566778889999865 68889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.++..++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999875 59999999999999876 9999999999998754
No 42
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-53 Score=387.50 Aligned_cols=213 Identities=29% Similarity=0.451 Sum_probs=189.7
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58999999999862 01699999999999999999999999999999999999999999999988642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+.++|+||++.+++.+|+.||+.+....++.......+.+.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999987655444444444566778899999865 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999764 8999999999999976 99999999999999999887643
No 43
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.8e-53 Score=385.38 Aligned_cols=210 Identities=33% Similarity=0.530 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999987 5699999999999999999999999999999999999999999999988642 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+++.+|+.||+.+....++....+..++++++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999987654444433444556778888888865 68889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||+|||+.+++.++++|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999998779999999999999876 99999999999999999887653
No 44
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-53 Score=385.18 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 7 CAIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+||+++|+++.|+++. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 5899999999997522 3599999999999999999999999999999999999999999999998542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 359999999999999999999987654444444445567788899999965 6788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecCh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~ 215 (321)
|++|||||||+|||+.++..++++|+++++ +|+|||++|||++++..+|++++|++|++++.++.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999975 59999999999999988789999999999988763
No 45
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.2e-53 Score=386.81 Aligned_cols=210 Identities=30% Similarity=0.435 Sum_probs=187.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999987 5699999999999999999999999999999999999999999999988642 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGM----------SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~----------~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
|+||++.+++.+|+.||+.+....... ...+..+.+.++++.++++. .++++.+|||||||||+|||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 999999999999999999876543321 12334456778888999865 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|+++||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999888754
No 46
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.7e-53 Score=382.04 Aligned_cols=206 Identities=28% Similarity=0.499 Sum_probs=185.3
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
||+++|++++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 589999999998721 1699999999999999999999999999999999999999999999988652 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999987665555544555667788899999965 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||+|||+.+++.+++.|++++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999998779999999999999976 9999999999997653
No 47
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.4e-53 Score=415.94 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=195.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 57999999999998 6799999999999999999999999999999999999999999999998652 569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
||+||++.+++.+|+.||+.+....+ .....+.+++++++++.+++.. .++++.+||||||||++|||||+++|+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999989999999998754322 1112334567888999999975 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
+|||||||+|||+.++.+++++|++++++|+|||++|||++++.+ |||+++|++|++++.|+++++.+. +.+.+.|
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~---~~l~~~~ 236 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA---DTLRAAF 236 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc---HHHHHHh
Confidence 999999999999999999999999998779999999999999976 999999999999999999988653 3455555
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-53 Score=381.02 Aligned_cols=208 Identities=30% Similarity=0.443 Sum_probs=184.8
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcC
Q psy106 9 IRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQ 82 (321)
Q Consensus 9 I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q 82 (321)
|+++|++++|++.. +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 57899999997521 3599999999999999999999999999999999999999999999998653 57999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.+++.+|+.||+.+....++...+...+.+..+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 9999998999999987655545444444566778889999865 688899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEe--CCEEEEecChh
Q psy106 162 GIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMR--KGILLEESPPK 216 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~--~G~i~~~g~~~ 216 (321)
|||+.++..++++|+++++ .|+|||++||+++++.. ||++++|+ +|++++.++++
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999864 58999999999999876 99999999 79999887654
No 49
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8.7e-53 Score=378.33 Aligned_cols=203 Identities=30% Similarity=0.486 Sum_probs=183.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEe
Confidence 578999999987 5699999999999999999999999999999999999999999999988652 3699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+....++....+.++++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999989999999987655444444455566778889999865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.++..++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999975 58999999999999976 9999999999998765
No 50
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-52 Score=383.47 Aligned_cols=212 Identities=32% Similarity=0.505 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ 76 (321)
||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 5899999999987 5699999999999999999999999999999999999999999999998542 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||+|||||++|||||+.+|+++
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 158 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999987532 233334444566778889999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.++..++++|++++++|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999998779999999999999976 999999999999999999887543
No 51
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-53 Score=387.37 Aligned_cols=222 Identities=27% Similarity=0.390 Sum_probs=200.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
++++++++++|+||+ ..+++||||++++||++||+|||||||||++|+|+|+++|++|+|.++|++. .
T Consensus 2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence 467999999999999 7899999999999999999999999999999999999999999999999864 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIY------------GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~------------~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~ 142 (321)
.|+.-||.+.+|++|||.||+......+ ....++..+++..+++.+++.+ .++++++||+|||+|+.
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LE 159 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLE 159 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHH
Confidence 5888999999999999999998764311 1134566778899999999976 79999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+.+|++|+||||.+||.|....++.++|+++++ .|.||+++.||++.+.. ||||++|+.|+++++|+|+++.+
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999999999986 57999999999999977 99999999999999999999976
Q ss_pred hcccccHHHHHH
Q psy106 221 KYNMKSLEDVFL 232 (321)
Q Consensus 221 ~~~~~~l~~~~~ 232 (321)
+ +.+.++|.
T Consensus 240 d---p~VieAYL 248 (250)
T COG0411 240 N---PRVIEAYL 248 (250)
T ss_pred C---HHhHHHhc
Confidence 5 45556654
No 52
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9.2e-53 Score=379.95 Aligned_cols=209 Identities=36% Similarity=0.605 Sum_probs=187.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|+++.|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++||+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999975324599999999999999999999999999999999999999999999998652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+....++.+..+..+++.++++.+++.. .++++.+||+|||||++|||||+.+|+++|||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999999999999988766555444444566778889899865 6788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||+.+++.+.+.|+++++ ++|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999875 5999999999999976 999999999999999988764
No 53
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.7e-52 Score=384.05 Aligned_cols=212 Identities=33% Similarity=0.492 Sum_probs=189.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------- 73 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7999999999987 569999999999999999999999999999999999999999999998742
Q ss_pred ---cCeEEEEcCCCCCCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 74 ---KKQLGFMPQQISLYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 74 ---~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
.++++|+||++.+++.+|+.||+.+.... .+....+..+++.++++.+++.. .++++.+||||||||++|||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 13699999999999999999999875332 23334444566778888889865 58889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+|++|||||||+|||+.++..++++|++++++|.|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998779999999999999976 999999999999999999887643
No 54
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-52 Score=393.84 Aligned_cols=213 Identities=28% Similarity=0.428 Sum_probs=189.5
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|++.. +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 489999999997521 3599999999999999999999999999999999999999999999988542
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--c-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 -KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--H-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 -~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++||+||++. .+...|+.||+.+.....+...++..+++.++++.+++. . .++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 46999999973 233579999999876555666666667788899999995 3 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|++|||||||+|||+.++.+++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999754 9999999999999966 99999999999999999998764
No 55
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=9.7e-53 Score=408.01 Aligned_cols=205 Identities=30% Similarity=0.439 Sum_probs=188.4
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------CeEEEEcC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQLGFMPQ 82 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ig~v~Q 82 (321)
|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||+||
T Consensus 1 ~~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 1 KKTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred CccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 46777 6699999999999999999999999999999999999999999999998642 46999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.+|+++||.||+.+.....+.+..+..+++.++++.++++. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999998877666666666778889999999975 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 162 GIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
+|||.++..+.+.+.++++ .|+|||++|||++++.. |||+++|++|+++..|+++++..+.
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 9999999999999999975 49999999999999976 9999999999999999999987654
No 56
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.5e-53 Score=379.69 Aligned_cols=201 Identities=29% Similarity=0.449 Sum_probs=178.8
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 9 IRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
|+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997521 3599999999999999999999999999999999999999999999988532
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++++|+||++.+++.+|+.||+.+.....+....+.++.+.++++.++++. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 369999999999999999999988655544443344556778889999875 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+|||||||+|||+.++..++++|+++++ +|+|||++||++++++.||++++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999976 59999999999999877999999999974
No 57
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-52 Score=379.81 Aligned_cols=207 Identities=30% Similarity=0.476 Sum_probs=182.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999987 5699999999999999999999999999999999999999999999988542 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHc-CCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL-HLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|+||++.+++.+|+.||+.+....++ ..+..+.+..+++.+ ++.. .++++.+||||||||++|||||+.+|+++||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999987654433 122334455566666 4544 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
||||+|||+.++..++++|++++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999998778999999999999876 9999999999999999887764
No 58
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-52 Score=391.57 Aligned_cols=211 Identities=24% Similarity=0.359 Sum_probs=187.8
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++|+++|++++|+++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 3 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred ceEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 479999999999632 4699999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. .++.+|+.||+.+.....+....+.++++..+++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999973 3456799999987655444555555567788899999865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|||||+|||+.++.+++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999998779999999999999965 999999999999999998754
No 59
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-52 Score=375.95 Aligned_cols=203 Identities=30% Similarity=0.555 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEcCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMPQQ 83 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~Q~ 83 (321)
|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+||+
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC
Confidence 578999999987 5699999999999999999999999999999999999999999999998653 579999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+.+++.+|+.||+.+....++....+..+.+.++++.++++. .++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999999999987665555444445567788889999865 6788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999988778999999999999976 9999999999998653
No 60
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-52 Score=409.94 Aligned_cols=216 Identities=25% Similarity=0.415 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEeCCCCC----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q psy106 7 CAIRVENAYKRHSSKLP----------------------YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~----------------------~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~ 64 (321)
.+|+++|++|.||.... .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 46999999999987320 17999999999999999999999999999999999999999
Q ss_pred cEEEECCccc-------------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCC
Q psy106 65 GNIHLSITSK-------------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130 (321)
Q Consensus 65 G~I~~~g~~~-------------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~ 130 (321)
|+|.++|.+. +++||+||++.+|+++|+.||+.+.....+.+..+..+++.++++.+++.. .++++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999998642 369999999999999999999998766555555555567788999999975 68999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|.++++ .|+|||++|||++++.. ||++++|++|+
T Consensus 163 ~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999974 59999999999999976 99999999999
Q ss_pred EEEecChhHHHhhc
Q psy106 209 LLEESPPKVLLEKY 222 (321)
Q Consensus 209 i~~~g~~~~l~~~~ 222 (321)
++..|+++++....
T Consensus 243 i~~~g~~~~l~~~~ 256 (400)
T PRK10070 243 VVQVGTPDEILNNP 256 (400)
T ss_pred EEecCCHHHHHhCc
Confidence 99999999987643
No 61
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2e-52 Score=390.18 Aligned_cols=214 Identities=21% Similarity=0.326 Sum_probs=190.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 468999999999987 6699999999999999999999999999999999999999999999988532
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++++|+||++.+++.+|+.||+.+..... ..+....++++..+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35999999999999999999998754332 2333334456677888999875 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||||||+|||+.+++.++++|++++++ |+|||++|||++++.. ||++++|++|++++.|+++++.+.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999754 8999999999999976 999999999999999999888653
No 62
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.3e-52 Score=378.58 Aligned_cols=209 Identities=28% Similarity=0.386 Sum_probs=184.2
Q ss_pred CCcceEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------
Q psy106 4 KDKCAIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------- 74 (321)
+.++||+++|++++|+++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 2 PAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred CcCceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHH
Confidence 3457899999999997532 2499999999999999999999999999999999999999999999988542
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++++|+||++.+++.+|+.||+.+....++...++.++++.++++.+++.. .++++.+||||||||++|||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 369999999999999999999987654444444445567788899999865 6888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEe
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~ 212 (321)
+.+|+++||||||+|||+.++..++++|+++++ .|.|||++|||+++++.||++++|++|++++.
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999975 48999999999999877999999999998753
No 63
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.7e-52 Score=376.74 Aligned_cols=199 Identities=27% Similarity=0.428 Sum_probs=179.1
Q ss_pred eEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 8 AIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
||+++|++++|+ + +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 589999999994 4 5699999999999999999999999999999999999999999999988542
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++++|+||++.+++.+|+.||+.+.....+......++++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 469999999999999999999988655444444444567788899999865 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
+||||||+|||+.++..+.++|++++++|+|||++||+++++.. ||++++|++|+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999988779999999999999987 99999999985
No 64
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-52 Score=391.67 Aligned_cols=215 Identities=25% Similarity=0.362 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
++|+++|++++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 479999999999742 24599999999999999999999999999999999999999999999998653 46
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQI-SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++ .+++.+|+.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998 36777899999988655555555556677888999999975 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.++..++++|+++++ .|+|||++||+++++..|||+++|++|+++..|+++++...
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999986 49999999999999966999999999999999999887643
No 65
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-52 Score=392.61 Aligned_cols=212 Identities=26% Similarity=0.415 Sum_probs=189.9
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
||+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 689999999997421 2599999999999999999999999999999999999999999999998642
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++||+||++ .+++ .|+.||+.|....++.+..+.++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 3699999987 5665 59999999876655666666667788899999985 3 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999998779999999999999966 99999999999999999998864
No 66
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.3e-52 Score=384.44 Aligned_cols=209 Identities=29% Similarity=0.426 Sum_probs=184.3
Q ss_pred eEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 8 AIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
||+++|++++|+ + +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred CeEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 589999999998 5 5699999999999999999999999999999999999999999999988542
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLI--------YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+++||+||++.+++.+|+.||+.+.... .+....+..+++.++++.+++.. .++++.+||||||||++|||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 4599999999999999999999764211 11112233456777888888865 68899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||+.+|++|||||||+|||+.++..+.++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999875 48999999999999966 999999999999999998876
No 67
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.4e-52 Score=398.74 Aligned_cols=218 Identities=25% Similarity=0.349 Sum_probs=194.8
Q ss_pred CcceEEEEeEEEEeCCC-----------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 5 DKCAIRVENAYKRHSSK-----------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~-----------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
.+++|+++||+++|+.. ...+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 46789999999999631 2469999999999999999999999999999999999999999999999865
Q ss_pred c------------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccCh
Q psy106 74 K------------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY--GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSG 135 (321)
Q Consensus 74 ~------------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSg 135 (321)
. ++++|+||++ .+++.+|+.||+.+....+ +.+..+.++++.++++.+++. . .++++++|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 2 4699999998 5888999999998765544 345556667788899999984 3 6899999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||||+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++++.. |||+++|++|++++.|
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999975 49999999999999977 9999999999999999
Q ss_pred ChhHHHhhc
Q psy106 214 PPKVLLEKY 222 (321)
Q Consensus 214 ~~~~l~~~~ 222 (321)
+++++.++.
T Consensus 245 ~~~~i~~~~ 253 (331)
T PRK15079 245 TYDEVYHNP 253 (331)
T ss_pred CHHHHHcCC
Confidence 999987653
No 68
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8e-52 Score=383.19 Aligned_cols=214 Identities=30% Similarity=0.452 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
..+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999987 5699999999999999999999999999999999999999999999988532
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-c-cCCCCccChHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-F-KRKCGSLSGGQQRR 140 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~-~~~~~~LSgGqkQR 140 (321)
++++|+||++.+++.+|+.||+.+.. ...+....+.++++.++++.+++.. . ++++.+||||||||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 46999999999999999999998643 2333444445567788899999965 3 78899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++|||||+.+|+++||||||+|||+.+++.+.++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999999999999999999998779999999999999986 9999999999999999998875
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
..
T Consensus 241 ~~ 242 (257)
T PRK10619 241 GN 242 (257)
T ss_pred hC
Confidence 43
No 69
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-52 Score=395.52 Aligned_cols=213 Identities=29% Similarity=0.482 Sum_probs=189.7
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------- 73 (321)
+|+++|++++|+++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 499999999997531 259999999999999999999999999999999999999999999997532
Q ss_pred ----------------------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-cc
Q psy106 74 ----------------------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FK 127 (321)
Q Consensus 74 ----------------------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~ 127 (321)
.++|||+||++ .++ ..||.||+.|.....+.+.++..+++.++++.++++ . .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 14699999986 344 569999999876656666666677888899999995 4 68
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999998779999999999999866 999999999
Q ss_pred CEEEEecChhHHHhh
Q psy106 207 GILLEESPPKVLLEK 221 (321)
Q Consensus 207 G~i~~~g~~~~l~~~ 221 (321)
|++++.|+++++...
T Consensus 241 G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 241 GKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEECCHHHHhcC
Confidence 999999999987653
No 70
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-52 Score=392.24 Aligned_cols=212 Identities=29% Similarity=0.480 Sum_probs=188.8
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997421 3599999999999999999999999999999999999999999999998642
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++||+||++ .++ ..|+.||+.+.....+....+..++++++++.+++. . .++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3699999997 455 479999998876555555555666788899999996 4 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999975 49999999999999976 99999999999999999988764
No 71
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.7e-52 Score=376.29 Aligned_cols=203 Identities=32% Similarity=0.461 Sum_probs=179.5
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
+|+++|++++|+++. +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 478999999997421 3599999999999999999999999999999999999999999999988542
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++++|+||++.+++.+|+.||+.+..........+..+++.++++.++++. .++++.+||||||||++|||||+.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 359999999999999999999987654433333344456778889999865 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEE
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILL 210 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~ 210 (321)
++|||||||+|||+.++..++++|+++++ .|+|||++|||+++++.||++++|++|+++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999975 589999999999999779999999999975
No 72
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6e-52 Score=380.06 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 47999999999987 5699999999999999999999999999999999999999999999998642 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY--------GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|+||++.+++.+|+.||+.+..... +...++.+++++++++.++++. .++++++|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999999999999998754311 1112334456788889999875 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999875 7899999999999976 99999999999999999888753
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.6e-52 Score=378.98 Aligned_cols=205 Identities=29% Similarity=0.458 Sum_probs=181.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCccEEEECCccc---------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----VLNGGNIHLSITSK--------- 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-----~p~~G~I~~~g~~~--------- 74 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999987 56999999999999999999999999999999999999 99999999988642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcCCcc-ccCC--CCccChHHHHHHHHHHHHh
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL-QQIKEKAEYLQALLHLNH-FKRK--CGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~ll~~~~l~~-~~~~--~~~LSgGqkQRv~iA~aL~ 148 (321)
+++||+||++.++ .+|+.||+.+.....+... .+.++++.++++.+++.. .+++ +.+||||||||++|||||+
T Consensus 79 ~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 79 LRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred HHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 4699999999888 7999999987655443322 224566778889999865 4555 5999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
.+|++|||||||+|||+.++..++++|++++++ +|||++|||++++.. ||++++|++|++++.|++++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999876 999999999999876 99999999999999998765
No 74
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-52 Score=381.66 Aligned_cols=212 Identities=28% Similarity=0.473 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
.||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 2 ATLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred ceEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 47999999999987 5699999999999999999999999999999999999999999999988542 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++.+|+.||+.+..... ....++.+.++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998754332 2233344556778888888865 58889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+++++++++++|+|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999988779999999999999876 99999999999999999988754
No 75
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-52 Score=389.86 Aligned_cols=214 Identities=28% Similarity=0.420 Sum_probs=191.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++|+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999975334699999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. ++...|+.||+.+.....+...++..+++..+++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999983 6677899999988665555555555667888999999875 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+|||+.++..++++|++++++ |.|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 164 LDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999865 899999999999997799999999999999999988754
No 76
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.6e-52 Score=380.63 Aligned_cols=210 Identities=30% Similarity=0.452 Sum_probs=187.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~-------- 74 (321)
||+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 5899999999987 56999999999999999999999999999999999999998 99999988642
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++ +|+.||+.+.....+ .+..+..+.+..+++.+++. . .++++.+||||||||++|||
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 46999999999888 999999987654443 23344456677888999985 4 57889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999876 4899999999999976 999999999999999999887643
No 77
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-51 Score=381.08 Aligned_cols=215 Identities=26% Similarity=0.421 Sum_probs=187.8
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc---
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK--- 74 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~--- 74 (321)
|.+.|+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|++.
T Consensus 1 ~~~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 1 MASPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred CCCCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 457789999999999987 569999999999999999999999999999999999964 6899999988542
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHH
Q psy106 75 --------KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 --------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQR 140 (321)
++++|+||++.+++ .|+.||+.+.....+. ..+...+++..+++.+++.. .++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 46999999998887 5999999876544433 22334456777888888732 478899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+|||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++|||++++.. ||++++|++|++++.|+++++.
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999854 7999999999999976 9999999999999999998876
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
+.
T Consensus 237 ~~ 238 (253)
T PRK14242 237 TR 238 (253)
T ss_pred cC
Confidence 54
No 78
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.3e-52 Score=376.08 Aligned_cols=202 Identities=28% Similarity=0.348 Sum_probs=181.4
Q ss_pred eEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 8 AIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
||+++|++++| ++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred CEEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 58999999999 55 5699999999999999999999999999999999999999999999988532
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+.++|+||++.+++++|+.||+.+.....+....+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999998889999999988655544444444556777888898865 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
|||||||+|||+.+++.++++|++++++|.|+|++||+++++.. ||++++|++|+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999998778999999999999977 99999999999864
No 79
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-52 Score=389.97 Aligned_cols=212 Identities=26% Similarity=0.397 Sum_probs=188.3
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|++.. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 589999999997421 3599999999999999999999999999999999999999999999998642
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+.+||+||++ .++ .+|+.||+.+....++...++..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3699999997 355 579999998765544445555566778889999996 4 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999988754
No 80
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-52 Score=379.96 Aligned_cols=211 Identities=33% Similarity=0.531 Sum_probs=188.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
++++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999862 3599999999999999999999999999999999999999999999988642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc---cccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN---HFKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~---~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
+||++.+++.+|+.||+.+.....+....+..+.+.++++.+++. ..++++.+||||||||++|||||+.+|+++||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999998765554444444456677888999986 35888999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999975 48999999999999876 99999999999999999888754
No 81
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.5e-52 Score=373.45 Aligned_cols=199 Identities=33% Similarity=0.570 Sum_probs=180.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEec
Confidence 578999999987 6799999999999999999999999999999999999999999999998653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.++...++.. .++++++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 9999999999999998765544321 345677888888865 68889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.+++.++++|++++++|+|||++|||++++.. ||++++|++|++++.|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999988779999999999999976 9999999999998754
No 82
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-52 Score=388.35 Aligned_cols=212 Identities=27% Similarity=0.367 Sum_probs=189.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~i 77 (321)
||+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1 ml~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 58999999999532 4599999999999999999999999999999999999999999999988642 459
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. .+...|+.||+.+....++....+..+++.++++.+++.. .++++.+||+|||||++|||||+.+|+++|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999985 3566899999987655555555555667788889999875 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+|||+.++..+++.+++++++|.|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999877999999999999996699999999999999999988764
No 83
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-53 Score=392.59 Aligned_cols=222 Identities=27% Similarity=0.416 Sum_probs=204.6
Q ss_pred ceEEEEeEEEEeCCCCC----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q psy106 7 CAIRVENAYKRHSSKLP----------------------YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~----------------------~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~ 64 (321)
..|+++|++|-||++.. ..++|+||+|+.|||+.|+|-||||||||+|++.+|++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 35899999999986321 25799999999999999999999999999999999999999
Q ss_pred cEEEECCccc-------------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCC
Q psy106 65 GNIHLSITSK-------------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130 (321)
Q Consensus 65 G~I~~~g~~~-------------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~ 130 (321)
|+|.++|.+. +++++|||++.++|+.||.||..|+....+.++.+.++++.+.++.++|.. .+++|
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999763 679999999999999999999999999999999999999999999999976 68999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
++|||||||||.|||||+.+|++|++|||+|+|||.-+.++.+-|.++.+ -++||+++|||++|+-+ .|||++|++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 99999999999999999999999999999999999999999999999874 58999999999999977 99999999999
Q ss_pred EEEecChhHHHhhcccccHH
Q psy106 209 LLEESPPKVLLEKYNMKSLE 228 (321)
Q Consensus 209 i~~~g~~~~l~~~~~~~~l~ 228 (321)
|+..|+|+++..++..+-+.
T Consensus 243 ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 243 IVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred EEEeCCHHHHHcCccHHHHH
Confidence 99999999998876543333
No 84
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-52 Score=379.46 Aligned_cols=210 Identities=28% Similarity=0.463 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~~ 76 (321)
|+++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999752 3599999999999999999999999999999999999999999999988542 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLI--------YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|+||++.+++.+|+.||+.+.... .+.......+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999764321 11112233456677888899865 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+.+|+++||||||+|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|++++.|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999999999999999975 59999999999999986 9999999999999999988763
No 85
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-51 Score=378.64 Aligned_cols=210 Identities=29% Similarity=0.432 Sum_probs=187.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
+|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 6899999999987 5699999999999999999999999999999999999999999999988631
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYY-GLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++++|+||++.+++.+|+.||+.+. ....+....+..+.+.++++.++++. .++++.+||||||||++|||||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3699999999999999999999753 23334444444566778888889865 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+++||||||+|||+.++..++++|++++++|+|+|++||+++++.. ||++++|++|++++.|+++++.
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99999999999999999999999999998779999999999999976 9999999999999999887753
No 86
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-52 Score=378.26 Aligned_cols=210 Identities=24% Similarity=0.474 Sum_probs=184.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 4 VMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred cEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 48999999999987 6799999999999999999999999999999999999999999999998642 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHc-CCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL-HLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++.+|+.||+.+..... ...+..+.+..+++.+ ++.. .++++.+||||||||++|||||+.+|+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999998753221 1222334455556665 3543 57789999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.+++.+++.|++++++|.|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999998779999999999999866 99999999999999999988853
No 87
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-51 Score=382.90 Aligned_cols=207 Identities=30% Similarity=0.436 Sum_probs=185.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQ 83 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~ 83 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++||+||+
T Consensus 1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 5899999999987 5699999999999999999999999999999999999999999999998653 468999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 999999999999987654444444444566788899999865 5888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe--CCEEEEecChh
Q psy106 163 IDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR--KGILLEESPPK 216 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~--~G~i~~~g~~~ 216 (321)
||+.++..++++|++++ ++|+|||++|||++++.. ||++++|+ +|+++..++.+
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999985 458999999999999976 99999998 59999887653
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-52 Score=372.48 Aligned_cols=201 Identities=33% Similarity=0.628 Sum_probs=180.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|++++|++ ..+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEe
Confidence 578999999987 56999999999999 9999999999999999999999999999999998642 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|+++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999999988665555444444566778889999865 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
|+|||+.+++.+.++|+++++ +.|||++|||++++.. |||+++|++|++++.|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999876 5999999999999976 9999999999998754
No 89
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-52 Score=386.18 Aligned_cols=211 Identities=25% Similarity=0.364 Sum_probs=187.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ 76 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 6899999999987 5699999999999999999999999999999999999999999999988642 36
Q ss_pred EEEEcCCCCC-CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISL-YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++.+ +...|+.+|+.+.....+....+..+++..+++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999753 345689999987655444444444566778888888865 67889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999998779999999999999976 99999999999999999988754
No 90
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-51 Score=380.91 Aligned_cols=213 Identities=25% Similarity=0.375 Sum_probs=187.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
++||+++|+++.|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 568999999999987 6799999999999999999999999999999999999999999999998642 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH----------hCC-----CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI----------YGM-----SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQR 139 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~----------~~~-----~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQ 139 (321)
.++|+||++.+++.+|+.||+.+.... +.. ...+..+.+.++++.+++.. .++++.+|||||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 489999999999999999999875321 110 11122345677788888865 68999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|++|||||+.+|++|||||||+|||+.++..++++|.+++++ |+|||++||+++++.. ||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 999999999999999999999999999999999999999865 8999999999999976 99999999999999999888
Q ss_pred HHh
Q psy106 218 LLE 220 (321)
Q Consensus 218 l~~ 220 (321)
+.+
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 754
No 91
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-51 Score=381.29 Aligned_cols=212 Identities=29% Similarity=0.477 Sum_probs=187.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 10 QPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred ceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 468999999999987 5699999999999999999999999999999999999975 899999987542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~iA 144 (321)
+.+||+||++.+++ +|+.||+.+....++.+.....+++.++++.+++. . .++++.+|||||||||+||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 45999999998888 89999998765544444444445677788888762 2 5788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ |+|||++|||++++.. |||+++|++|++++.|+++++...
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999864 7999999999999976 999999999999999999988654
No 92
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-52 Score=386.41 Aligned_cols=210 Identities=30% Similarity=0.467 Sum_probs=187.3
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------Ce
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQ 76 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ 76 (321)
.++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888887 6699999999999999999999999999999999999999999999988542 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+||+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999988655444444444566778889999865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+|||+.+++.++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999975 48999999999999876 999999999999999999888654
No 93
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-51 Score=383.79 Aligned_cols=219 Identities=22% Similarity=0.336 Sum_probs=192.6
Q ss_pred CCCCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 1 ~~~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
|.+. .+||+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~~~~-~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 1 MEDK-NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CCCC-CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 5555 578999999999976323599999999999999999999999999999999999999999999998652
Q ss_pred ---CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 ---KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 ---~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
++++|+||++. +++..|+.+|+.+.....+...++..+.+..+++.+++.. .++++.+||+|||||++|||||+.
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 46999999985 6777899999987654444444445566778889999865 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|+++||||||+|||+.++..+++.|+++++ .|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999875 4899999999999986799999999999999999988754
No 94
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-51 Score=382.18 Aligned_cols=211 Identities=28% Similarity=0.434 Sum_probs=187.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 6899999999987 5699999999999999999999999999999999999999999999988642 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh------cCC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL------HDP 151 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~------~~P 151 (321)
|+||++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+ .+|
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 99999998888999999987543322222333456778888889865 68899999999999999999999 599
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|||||||+|||+.++..+.++|++++ ++|+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 9999999999999999999999999997 679999999999999976 99999999999999999887754
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-51 Score=386.44 Aligned_cols=213 Identities=24% Similarity=0.390 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~ 75 (321)
+||+++|++++|+++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 4 ~~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 489999999999632 5699999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 76 QLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 76 ~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++||+||++. .+...|+.||+.+.....+.+..+..++++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 6999999973 2345799999987655445555555567888899999975 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||||+|||+.++..++++|++++++ |+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 163 LilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999864 9999999999999975 99999999999999999998764
No 96
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-51 Score=384.74 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=188.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++++++|++++|++. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 2 ~~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 2 HLIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred ceEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 579999999999642 4599999999999999999999999999999999999999999999998643 369
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. .+...|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999974 3346799999987654444555555567788999999865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+|||+.++..+++++++++++ |.|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999864 8999999999999965 99999999999999999998864
No 97
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-51 Score=387.46 Aligned_cols=212 Identities=24% Similarity=0.429 Sum_probs=188.0
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|+++. +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999997421 3599999999999999999999999999999999999999999999988542
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++ .+++ .|+.||+.+.....+....+..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3699999987 4555 59999998865554555556667788899999996 4 5788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|+++||||||+|||+.++..++++|+++++ .|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 59999999999999865 99999999999999999988764
No 98
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-51 Score=392.77 Aligned_cols=217 Identities=24% Similarity=0.370 Sum_probs=193.6
Q ss_pred cceEEEEeEEEEeCCC--------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---
Q psy106 6 KCAIRVENAYKRHSSK--------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~--------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--- 74 (321)
+++|+++||++.|+.. ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 4689999999999631 24699999999999999999999999999999999999999999999998642
Q ss_pred ---------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHH
Q psy106 75 ---------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 ---------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQR 140 (321)
++|||+||++ .+++.+|+.+++......+ +....+.++++.++++.+++.. .++++++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 4699999998 5888999999987655443 3445555677888999999953 689999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||||+.+|++||+||||++||+.++.+++++|+++++ .|.|+|++|||++++.. |||+++|++|++++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999985 59999999999999986 999999999999999999998
Q ss_pred Hhhc
Q psy106 219 LEKY 222 (321)
Q Consensus 219 ~~~~ 222 (321)
.+..
T Consensus 243 ~~~p 246 (327)
T PRK11308 243 FNNP 246 (327)
T ss_pred hcCC
Confidence 7654
No 99
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-51 Score=392.15 Aligned_cols=215 Identities=29% Similarity=0.457 Sum_probs=189.9
Q ss_pred CcceEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------
Q psy106 5 DKCAIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------- 73 (321)
+.++|+++|++++|++.. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.+
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 457899999999997521 359999999999999999999999999999999999999999999998632
Q ss_pred -----------------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCc
Q psy106 74 -----------------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGS 132 (321)
Q Consensus 74 -----------------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~ 132 (321)
.+++||+||++ .+++ .|+.||+.+.....+.+.++..+++.++++.++++ . .++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 14699999997 4665 59999998765444455555566778889999995 3 6889999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
||||||||++|||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. |||+++|++|++++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998779999999999999865 99999999999999
Q ss_pred ecChhHHHh
Q psy106 212 ESPPKVLLE 220 (321)
Q Consensus 212 ~g~~~~l~~ 220 (321)
.|+++++..
T Consensus 257 ~g~~~~~~~ 265 (320)
T PRK13631 257 TGTPYEIFT 265 (320)
T ss_pred eCCHHHHhc
Confidence 999998864
No 100
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-51 Score=383.66 Aligned_cols=217 Identities=25% Similarity=0.379 Sum_probs=190.9
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
+..+||+++|++++|+++.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 3 ~~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 3 NKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIR 82 (271)
T ss_pred CcceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHh
Confidence 44679999999999963225699999999999999999999999999999999999999999999988642
Q ss_pred CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 ~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+++||+||++. .++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999974 5677899999987654434444445566788889999865 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||||+|||+.+++.++++|++++++ ++|||++||+++++..||++++|++|+++..|+++++..
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999765 599999999999987799999999999999999887754
No 101
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-51 Score=380.21 Aligned_cols=211 Identities=25% Similarity=0.448 Sum_probs=187.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998642 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGL----IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
|+||++.+++.+|+.||+.+... .++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998888999999987421 122112233456778888889865 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999988779999999999999976 99999999999999999887753
No 102
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.8e-51 Score=369.76 Aligned_cols=200 Identities=28% Similarity=0.447 Sum_probs=179.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~~ 76 (321)
|+++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999642 4699999999999999999999999999999999999999999999988642 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
++|+||++.+++.+|+.||+.+....++...++..+++.++++.++++. .++++.+||||||||++|||||+.+|+++|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999988755544444445566778889989865 588899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
|||||+|||+.+++.+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999997779999999999999976 999999999974
No 103
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.5e-51 Score=370.01 Aligned_cols=199 Identities=32% Similarity=0.489 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------CeE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQL 77 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~i 77 (321)
|+++|++++|++ +.+++++||++++|+++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999987 5699999999999999999999999999999999999999999999988642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+|+||++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||||||||++|||||+.+|+++|
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 158 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVML 158 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999987543 233334444566778888888865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
|||||+|||+.+++.++++|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 159 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 159 FDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999998778999999999999976 999999999974
No 104
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-51 Score=381.88 Aligned_cols=206 Identities=27% Similarity=0.376 Sum_probs=184.7
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEE
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLG 78 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig 78 (321)
+++.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 7 ~~~~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 7 LNQGTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred ccCCCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 456788999999999987 5699999999999999999999999999999999999999999999988642 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+++.+|+.||+.+... . ..++++.++++.+++.. .++++.+||||||||++|||||+.+|+++|||
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred EEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999998999999986421 1 12345677888899865 68899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+|||+.++..+.++|++++ +.|+|||++|||++++.. ||++++|++|++++.++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999986 458999999999999876 9999999999999988765
No 105
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-51 Score=370.27 Aligned_cols=199 Identities=28% Similarity=0.415 Sum_probs=174.6
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEE
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFM 80 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v 80 (321)
+++|++++|++..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999976223599999999999999999999999999999999999999999999988642 469999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 81 PQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 81 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
||++. .++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99985 3667899999987654444334444556778888899864 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999998779999999999999987 99999999985
No 106
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-51 Score=391.18 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=190.7
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC----CCccEEEECCccc-------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV----LNGGNIHLSITSK------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~----p~~G~I~~~g~~~------- 74 (321)
+|+++|+++.|++.. ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 699999999997632 359999999999999999999999999999999999997 4899999998752
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHHHH
Q psy106 75 ------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 ------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQRv 141 (321)
+.|+|+||++ .+++.+|+.+++......+ +...++.++++.++++.+++.. .++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 2599999998 5888999998887655443 3445556677888999999952 4789999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++++.. |||+++|++|++++.|+++++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999985 59999999999999976 9999999999999999999987
Q ss_pred hhcc
Q psy106 220 EKYN 223 (321)
Q Consensus 220 ~~~~ 223 (321)
++..
T Consensus 243 ~~p~ 246 (326)
T PRK11022 243 RAPR 246 (326)
T ss_pred hCCC
Confidence 6543
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-51 Score=375.81 Aligned_cols=212 Identities=27% Similarity=0.413 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 2 NKIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred ceEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 46999999999987 5699999999999999999999999999999999999974 799999998642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
+++||+||++.+++.+|+.||+.+.....+. ...+..+.+.++++.+++. ..++++.+||||||||++|||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 4699999999888899999999876543322 2334455677888888874 257889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..+++.|+++++ |+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 160 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 99999999999999999999999999999999864 8999999999999866 999999999999999999887643
No 108
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-51 Score=381.87 Aligned_cols=216 Identities=25% Similarity=0.379 Sum_probs=189.9
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------- 74 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------- 74 (321)
-++.++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 6 ~~~~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 6 NHSDTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred CCCCceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 456789999999999987 5699999999999999999999999999999999999999999999998642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHH-hC---CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLI-YG---MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+.++|+||++.+++.+|+.||+.+.... .. .......+++..+++.+++.. .++++.+||||||||++|||||+
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 4699999998888889999999864321 11 111233456778888999865 68899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
.+|++|||||||+|||+.+++.++++|.+++++ |.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999999999754 8999999999999976 99999999999999999887753
No 109
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-51 Score=382.48 Aligned_cols=212 Identities=27% Similarity=0.443 Sum_probs=186.6
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 489999999997521 3599999999999999999999999999999999999999999999988532
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|+|+||++ .+++ .|+.||+.+....++...++..++++++++.+++. . .++++.+||||||||++|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3599999997 4555 69999998765544444445556677888889986 3 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.+++.+++.|++++++|+|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999988754
No 110
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-51 Score=376.11 Aligned_cols=213 Identities=29% Similarity=0.442 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (253)
T PRK14267 2 KFAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79 (253)
T ss_pred cceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence 458999999999987 5699999999999999999999999999999999999987 499999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
++++|+||++.+++.+|+.||+.+.....+. +.++..+++..+++.+++. ..++++.+||||||||++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred hHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 3699999999999999999999876543332 2333445667788887763 257889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|+++||||||+|||+.++..+.++|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999865 6999999999999876 999999999999999999887643
No 111
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.2e-51 Score=375.99 Aligned_cols=211 Identities=27% Similarity=0.450 Sum_probs=187.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------- 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------- 74 (321)
|+++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999987 5699999999999999999999999999999999999999999999987531
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHH
Q psy106 75 --------KQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 --------~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++.+|+.||+.+... ..+....+..+.+.++++.++++. .++.+.+||||||||++||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence 469999999999999999999987532 223334444556778888899865 6888999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ .|.|+|++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999876 48999999999999966 999999999999999999887654
No 112
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-51 Score=383.95 Aligned_cols=215 Identities=21% Similarity=0.317 Sum_probs=191.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc---cEEEECCccc--------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---GNIHLSITSK-------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~---G~I~~~g~~~-------- 74 (321)
.+||+++|++++|++..+.+++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.+.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 35799999999997532459999999999999999999999999999999999999987 8999998653
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 -KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 -~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+++||+||++. +++.+|+.||+.+.....+.+.++..+++..+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 46999999984 6677899999987655455555555677888899999875 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|||||||+|||+.++..++++|+++++ .|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999975 4999999999999997799999999999999999988764
No 113
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.4e-51 Score=370.22 Aligned_cols=206 Identities=31% Similarity=0.403 Sum_probs=177.0
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++++|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 589999999997621 1699999999999999999999999999999999999999999999988542
Q ss_pred -CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCC-HHHHHHH-HHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 -KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMS-LQQIKEK-AEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 -~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~-~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++||+||++ .+++.+|++||+.+....++.. ..+..+. +.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 3699999998 5677899999998765443322 1222222 34677888884 3 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999765 8999999999999986 9999999999997654
No 114
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-51 Score=372.56 Aligned_cols=205 Identities=28% Similarity=0.468 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999987 5699999999999999999999999999999999999999999999988542 3699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-Ccc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-LNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|+||++.+++.+|+.||+.+....++... .+....+++.++ +.. .++++.+||||||||++|||||+.+|+++||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999987654433221 233455566655 443 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||||+|||+.++..++++|.++++ .|+|||++||+++++.. ||+++++++|++++.|+++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999886 48999999999999986 999999999999999998876
No 115
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-51 Score=367.97 Aligned_cols=196 Identities=30% Similarity=0.371 Sum_probs=172.5
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEcCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMPQQ 83 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~Q~ 83 (321)
+++|++++|++. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++||+||+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 468999999752 3599999999999999999999999999999999999999999999998753 479999999
Q ss_pred CC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 84 IS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 84 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+. .+..+|+.||+.+.....+. ..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 74 23457999999875443321 1245677888999865 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~ 210 (321)
|||+.+++.++++|++++++|.|||++||+++++.. ||++++|++|+++
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999997779999999999999976 9999999999874
No 116
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-51 Score=375.27 Aligned_cols=212 Identities=29% Similarity=0.429 Sum_probs=185.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 458999999999987 5699999999999999999999999999999999999987 489999987531
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCC----cc-ccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHL----NH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l----~~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++ +|++||+.+.....+. .....++.+..+++.+++ .. .++++.+||||||||++|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 46999999998885 8999999876544332 233345566777787776 22 578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..++++|++++ ++.|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999996 47999999999999976 999999999999999999988654
No 117
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-51 Score=382.61 Aligned_cols=216 Identities=25% Similarity=0.381 Sum_probs=190.5
Q ss_pred cceEEEEeEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------
Q psy106 6 KCAIRVENAYKRHSSK----LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~----~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------- 74 (321)
.+||+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 4689999999999742 14699999999999999999999999999999999999999999999987542
Q ss_pred ---CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 ---KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 ---~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++||+||++. .+...|+.+|+.+.....+.+..+.++++.++++.+++.. .++++.+||||||||++|||||+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 46999999974 2334699999988765555555555677888999999965 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|+++||||||+|||+.++..+++.|+++++ .|.|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999975 59999999999999977999999999999999999988643
No 118
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-51 Score=371.59 Aligned_cols=210 Identities=24% Similarity=0.348 Sum_probs=184.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||+++|++++|++ .. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 ~l~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 1 MLKLTDITWLYHH--LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred CeEEEEEEEEECC--cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 5899999999986 32 499999999999999999999999999999999999999999998652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+.........+..++++.++++.++++. .++++.+||||||||++||||++.+|+++|||||
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999976532111111233456778889999865 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||+.+++.+.++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 157 ~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999875 58999999999999976 999999999999999999887653
No 119
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.3e-51 Score=378.97 Aligned_cols=216 Identities=20% Similarity=0.289 Sum_probs=188.6
Q ss_pred cceEEEEeEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----
Q psy106 6 KCAIRVENAYKRHSSK-------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~-------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---- 74 (321)
.+||+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 3589999999999631 14699999999999999999999999999999999999999999999988542
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS--LYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++. +++.+|+.+++.+....+ .....+..+.+.++++.+++. . .++++.+||||||||++||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 36999999975 677889999998765443 233334455677889999984 3 5778899999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|++|||||||+|||+.+++.+.++|.++++ .|.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 999999999999999999999999999999999975 48999999999999987 999999999999999999888654
No 120
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=8.5e-51 Score=396.51 Aligned_cols=199 Identities=28% Similarity=0.489 Sum_probs=181.8
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc----c-------------cCeEEEEcCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT----S-------------KKQLGFMPQQIS 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~----~-------------~~~ig~v~Q~~~ 85 (321)
..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ + .++++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999984 1 036999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
+++.+|+.||+.+.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 9999999999998766656555556677888999999975 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 165 PVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|..+.++++.|.++++ .|+|||++|||++++.. |||+++|++|+++..|+++++...
T Consensus 197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999975 49999999999999966 999999999999999999998754
No 121
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-51 Score=368.41 Aligned_cols=213 Identities=27% Similarity=0.409 Sum_probs=188.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+|++++||+..||+ .++|++|||++++||+++++||||||||||+|+|+|+.+|.+|+|.++|++. .
T Consensus 1 ~~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 1 APMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CCceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 368999999999999 6799999999999999999999999999999999999999999999999874 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-Ccc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-LNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
.|+||||...+|+.|||+|||.+++..... +...+...+++.++|= +.+ .+++.++|||||||.++|||||+.+|++
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 699999999999999999999986544322 1111122555666653 333 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||||.||-|.-.+++.+.|++++++ |.||+++.++...+.. +||.++|.+|+++.+|+.+++..+
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999955 8899999999999966 999999999999999999998754
No 122
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-51 Score=380.18 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=186.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ 76 (321)
||+++|++++|++. +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 58999999999732 4599999999999999999999999999999999999999999999998542 45
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
|+|+||++. .+...|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999973 3334799999987543334444455566778899999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..++++|++++++|.|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999998779999999999999976 99999999999999999998764
No 123
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2e-51 Score=369.82 Aligned_cols=200 Identities=30% Similarity=0.434 Sum_probs=173.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----cCeEEEEcCCCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----KKQLGFMPQQIS 85 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----~~~ig~v~Q~~~ 85 (321)
+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++|+||++.
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 46899999987 569999999999999999999999999999999999999999999999865 357999999987
Q ss_pred CC--CCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 86 LY--PEFTIDEMICYYGLIYG----MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 86 l~--~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
++ ..+|+.||+.+...... ......++++..+++.++++. .++++.+||||||||++|||||+.+|++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 63 34799999987533211 112233456778889999865 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEe
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~ 212 (321)
||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++| +++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999998779999999999999976 9999999886 5444
No 124
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=375.87 Aligned_cols=212 Identities=27% Similarity=0.415 Sum_probs=186.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
..+|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 468999999999987 569999999999999999999999999999999999986 5899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++ +|+.||+.+....+ +.+..+..+++.++++.+++. ..++++.+||||||||++|
T Consensus 89 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred hHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 46999999998887 89999998765433 334444456677888888863 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.+++.+.+.|++++ ++.|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999986 47899999999999976 999999999999999999888654
No 125
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-50 Score=388.76 Aligned_cols=218 Identities=22% Similarity=0.314 Sum_probs=192.5
Q ss_pred cceEEEEeEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~--~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~------ 74 (321)
+++|+++|+++.|+. +...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 578999999999953 2246999999999999999999999999999999999999996 99999998752
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQR 140 (321)
++|+|+||++ .+++.+|+.+++......+ +....+..+++.++++.+++.. .++++++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 3699999998 6889999999987655444 3445555667788899998853 367899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||||+.+|++||+||||+|||+.++..++++|+++++ .|.|+|++|||++++.. |||+++|++|+|++.|+++++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999985 49999999999999976 999999999999999999999
Q ss_pred Hhhcc
Q psy106 219 LEKYN 223 (321)
Q Consensus 219 ~~~~~ 223 (321)
.+...
T Consensus 250 ~~~p~ 254 (330)
T PRK09473 250 FYQPS 254 (330)
T ss_pred HhCCC
Confidence 87543
No 126
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1e-50 Score=377.76 Aligned_cols=213 Identities=24% Similarity=0.370 Sum_probs=186.9
Q ss_pred eEEEEeEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 8 AIRVENAYKRHSSK-------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
||+++|+++.|++. .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 69999999999631 25699999999999999999999999999999999999999999999988542
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHH
Q psy106 75 ------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 ------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++ .+++.+|+.||+.+..... ........+++.++++.+++. . .++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 3599999997 4677899999997654322 333334445677888999985 4 588999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||+++|++|||||||+|||+.++..++++|++++++ |+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999999764 8999999999999976 99999999999999999998864
No 127
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.6e-50 Score=374.69 Aligned_cols=214 Identities=22% Similarity=0.361 Sum_probs=187.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----c------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-----K------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~------ 74 (321)
++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 4 ~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 4 QPLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred CceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 458999999999987 569999999999999999999999999999999999999999999998865 2
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQIS--LYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~ 142 (321)
+.++|+||++. +++.+|+.+|+.+.....+. ...+.++.+.++++.+++. ..++++.+||||||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 25999999984 67778999998764332221 2233455677888899985 258899999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 241 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 48999999999999976 99999999999999999988764
Q ss_pred h
Q psy106 221 K 221 (321)
Q Consensus 221 ~ 221 (321)
+
T Consensus 242 ~ 242 (258)
T PRK11701 242 D 242 (258)
T ss_pred C
Confidence 3
No 128
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-50 Score=372.62 Aligned_cols=212 Identities=27% Similarity=0.456 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 478999999999987 5699999999999999999999999999999999999875 799999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++ +|+.||+.+....++. ...+..+++..+++.+++. ..++++.+||+|||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred HHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 45999999999887 8999999876554443 2333445667788888763 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+++.|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999876 5899999999999876 999999999999999999988654
No 129
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-51 Score=366.43 Aligned_cols=201 Identities=25% Similarity=0.371 Sum_probs=176.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +. .|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +++||+|
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEe
Confidence 578999999986 32 399999999999999999999999999999999999999999998643 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+.........++.++++.++++.+++.. .++++.+||+|||||++|||||+.+|+++||||||
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999986533211111233456778889999875 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.++..++++|+++++ .|+|||++||+++++.. |||+++|++|++++.|
T Consensus 157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999975 59999999999999976 9999999999997653
No 130
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.6e-50 Score=366.63 Aligned_cols=203 Identities=29% Similarity=0.510 Sum_probs=183.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEcCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMPQQ 83 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~Q~ 83 (321)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|+||+
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCC
Confidence 578999999987 6699999999999999999999999999999999999999999999988642 479999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+.+++.+|+.||+.+....++.. .+.+.++++.++++. .++++.+||+|||||++||||++.+|+++||||||+|
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 99999999999998765444432 235667788888875 6888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||+.+++.++++|++++++|.|||++|||++++.. |||+++|++|+++..|++++
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999998779999999999999976 99999999999999998753
No 131
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-50 Score=378.63 Aligned_cols=214 Identities=25% Similarity=0.347 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
++|+++|++++|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999742 13599999999999999999999999999999999999999999999998653 46
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++. +++..|+.||+.+.....+....+..++++.+++.+++.. .++++.+||||||||++|||||+.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999984 5667899999987654444444455566788889888865 68889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..++++|.+++++ |.|||++||+++++..||++++|++|++++.|+++++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999864 999999999999997799999999999999999988764
No 132
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.9e-50 Score=374.95 Aligned_cols=211 Identities=26% Similarity=0.410 Sum_probs=186.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc--------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK-------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~-------- 74 (321)
.++|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 2 QTIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred CcEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 468999999999987 66999999999999999999999999999999999999986 49999998542
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLI--------YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQR 139 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQ 139 (321)
++++|+||++.+++.+|+.||+.+.... .+...++.++++.++++.+++.. .++++.+||+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHH
Confidence 3589999999999999999999865321 01112233456788889999864 68899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|++|||||+.+|++|||||||+|||+.+++.+++.|+++++ +|+|||++|||++++.. ||++++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 58999999999999866 99999999999999999987
Q ss_pred H
Q psy106 218 L 218 (321)
Q Consensus 218 l 218 (321)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 5
No 133
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-50 Score=373.27 Aligned_cols=213 Identities=25% Similarity=0.405 Sum_probs=186.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc-----
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK----- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~----- 74 (321)
.++||+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 9 ~~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 9 KQEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CCceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 3568999999999987 569999999999999999999999999999999999987 3 699999988642
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
+.+||+||++.+++. |+.||+.+....++. ...+..+++..+++.+++. ..++++.+||||||||++
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 459999999988875 999999876544432 2334445567778887763 247889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|+++||||||+|||+.++..+++.|+++++ ++|+|++||+++++.. |||+++|++|++++.|+++++..+
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 99999999999999999999999999999999999865 7999999999999976 999999999999999999988654
No 134
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-50 Score=370.49 Aligned_cols=212 Identities=29% Similarity=0.402 Sum_probs=184.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CC---CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VL---NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p---~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 3 EPILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred CceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 358999999999987 56999999999999999999999999999999999985 36 599999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++ +|+.||+.+.....+.. ....++.+..+++.+++. ..++++.+||+|||||++|
T Consensus 81 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 36999999999887 79999998765444432 223345566777777762 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999865 6899999999999876 999999999999999999988654
No 135
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-50 Score=377.45 Aligned_cols=214 Identities=21% Similarity=0.331 Sum_probs=188.4
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
+..+|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 3568999999999987 5699999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIY-G---MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
+++|+||++.+++.+|+.||+.+..... + ...+...+++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 6999999999998999999997642111 0 111223456778889999865 6899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++||||||+|||+.++..+.++|.++++ .|.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999976 48999999999999976 99999999999999999888753
No 136
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-50 Score=372.63 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 3 ~~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 3 KRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred ccEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 47999999999987 5699999999999999999999999999999999999974 799999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+.+||+||++.+++.+|+.||+.+....++. ...+.++.+.++++.+++. ..++++.+|||||||||+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 4599999999999999999999876544332 3334455677788888873 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe------CCEEEEecChhH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR------KGILLEESPPKV 217 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~------~G~i~~~g~~~~ 217 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|+ +|++++.|++++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 999999999999999999999999999999999864 6899999999999976 99999997 799999999988
Q ss_pred HHhh
Q psy106 218 LLEK 221 (321)
Q Consensus 218 l~~~ 221 (321)
+...
T Consensus 240 ~~~~ 243 (258)
T PRK14241 240 IFSN 243 (258)
T ss_pred HHhC
Confidence 8653
No 137
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.8e-50 Score=369.87 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc----------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~----------~~ 76 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+. ..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999987 56999999999999999999999999999999999995 79999999998642 23
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYG-------MSLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSLAIT 146 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~iA~a 146 (321)
++|+||++.+++.+|+.||+.+...... ....+..+++..+++.+++. . .++++. +||||||||++||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 8999999999999999999987543221 12223345677888899986 3 577776 599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHH
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l 218 (321)
|+.+|+++||||||+|||+.+++.++++|++++++|+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 999999999999999999999999999999998778999999999999965 799999999999999988755
No 138
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-50 Score=371.78 Aligned_cols=208 Identities=29% Similarity=0.454 Sum_probs=184.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.+
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 2 NEIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred ceEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 46899999999987 5699999999999999999999999999999999999999999999998642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+|+||++.+++ .|+.||+.+.....+ . ..+++.++++.++++ . .++++.+||||||||++|||||+.+|+++|
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 80 GMVFQQPHLFE-GTVKDNIEYGPMLKG--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred EEEecCchhch-hhHHHHHhcchhhcC--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999998887 699999876433222 1 124566788888985 3 578899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+|||+.+++.+.+.|+++++ .|.|||++|||++++.. ||++++|++|+++..|+++++...
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999876 49999999999999976 999999999999999999888653
No 139
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-50 Score=386.43 Aligned_cols=216 Identities=22% Similarity=0.332 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC----CCccEEEECCccc------
Q psy106 7 CAIRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV----LNGGNIHLSITSK------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~--~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~----p~~G~I~~~g~~~------ 74 (321)
++|+++|++++|+. +...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999942 11469999999999999999999999999999999999986 5899999998642
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHHHHHHHh---C---CCHHHHHHHHHHHHHHcCCcc----ccCCCCccCh
Q psy106 75 -------KQLGFMPQQIS--LYPEFTIDEMICYYGLIY---G---MSLQQIKEKAEYLQALLHLNH----FKRKCGSLSG 135 (321)
Q Consensus 75 -------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~---~---~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSg 135 (321)
++|+|+||++. +.+.+|+.+++......+ + ....+.++++.++++.+++.. .++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 36999999985 678899999997543211 1 111234566788999999963 4788999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||||+|||||+.+|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++++.. |||+++|++|+|++.|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999986 49999999999999976 9999999999999999
Q ss_pred ChhHHHhhc
Q psy106 214 PPKVLLEKY 222 (321)
Q Consensus 214 ~~~~l~~~~ 222 (321)
+++++....
T Consensus 242 ~~~~i~~~p 250 (330)
T PRK15093 242 PSKELVTTP 250 (330)
T ss_pred CHHHHHhCC
Confidence 999987643
No 140
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-50 Score=370.45 Aligned_cols=210 Identities=29% Similarity=0.413 Sum_probs=184.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc---------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK---------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~---------~ 75 (321)
+|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++. +
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 6899999999987 569999999999999999999999999999999999974 7999999998652 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHHHHHHHh
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+++|+||++.+|+ .|++||+.+....++. .....++++..+++.+++. . .++++.+||||||||++|||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6999999999887 6999999876544332 1233445567788888883 2 47788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999864 8999999999999976 999999999999999999887653
No 141
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-50 Score=374.43 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=185.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.+.
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 468999999999987 5699999999999999999999999999999999999975 899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
+++||+||++.+++. |+.||+.+....++. +..+..+++..+++.+++. ..++++.+||||||||++
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred hHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 459999999988875 999999876543332 2233345667788888884 246789999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999865 6899999999999976 999999999999999999887643
No 142
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-50 Score=374.20 Aligned_cols=212 Identities=27% Similarity=0.382 Sum_probs=183.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 19 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 19 EHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 478999999999987 669999999999999999999999999999999999864 7999999987542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++. |+.||+.+.....+.. ....++.+..+++.+++. ..++++.+||||||||++|
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175 (268)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHH
Confidence 369999999998875 9999998764333321 222334556677777763 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 176 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999865 6899999999999876 999999999999999999888654
No 143
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-50 Score=366.71 Aligned_cols=211 Identities=32% Similarity=0.481 Sum_probs=189.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.+||+|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF 78 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEe
Confidence 478999999987 5699999999999999999999999999999999999999999999988643 5799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+....++.......+.+..+++.+++.. .++.+.+||+|||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999987655544444444566778889999865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||+.+++.++++|+++++ .|.|||++||+++++.. |||+++|++|++.+.|+++++...
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999975 49999999999999876 999999999999999988877643
No 144
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-50 Score=391.13 Aligned_cols=205 Identities=27% Similarity=0.436 Sum_probs=184.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------c
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------K 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------~ 74 (321)
||++ |++|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 1 ~l~~-~l~k~~~~--~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGD--LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCC--EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 5888 99999987 33 3 8999999999999999999999999999999999999999998753 1
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+++||+||++.+|+.+|+.||+.+... ....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l 149 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL 149 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999999999999987532 112355778889999875 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||||+|||+.++..+++.|++++++ |+|+|++|||++++.. ||++++|++|+++..|+++++..+..
T Consensus 150 lLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 150 LLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999754 8999999999999977 99999999999999999999987643
No 145
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.1e-50 Score=373.50 Aligned_cols=210 Identities=23% Similarity=0.376 Sum_probs=185.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999987 6699999999999999999999999999999999999999999999988642 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 80 MPQQISLYPEFTIDEMICYYGLI----YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||++.+++.+|+.||+.+.... +.....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLL 159 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999888889999999874211 11122233456777888888865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+.++|++++++|.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999998778999999999999966 99999999999999999887743
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-50 Score=379.03 Aligned_cols=213 Identities=27% Similarity=0.386 Sum_probs=185.0
Q ss_pred ceEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 7 CAIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
..|+++|++++|+++. ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999997631 2499999999999999999999999999999999999999999999987531
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS--LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 -----~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++. +++ .|+.||+.+.....+....+..+++..+++.+++. . .++++.+||||||||++|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 36999999973 443 69999998765433444444455677788888984 3 68899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||+.+|++|||||||+|||+.+++.++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999875 58999999999999876 99999999999999999988754
No 147
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3e-51 Score=356.72 Aligned_cols=210 Identities=27% Similarity=0.384 Sum_probs=189.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||.++++.++|+. .=-.++++|+.||+++|+||||||||||+++|+|+..|.+|+|+++|.+. +-++++
T Consensus 1 ~l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 1 MLALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred CccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5788999999987 23678899999999999999999999999999999999999999999874 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||+.++|..+||.+|+.++....-.-..+.+++++.++..+|+.. .+|.|.+|||||||||+|||+|+++-++++||||
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEP 156 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEP 156 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCc
Confidence 999999999999999987653321113445677888889999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|+|||..+.++..++.+++ +++.|++|+||+++++.+ +|+++++++|+|.+.|+.+++...
T Consensus 157 FsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 157 FSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999998 679999999999999987 999999999999999999988754
No 148
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-50 Score=366.19 Aligned_cols=210 Identities=30% Similarity=0.503 Sum_probs=188.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ + +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEe
Confidence 578999999986 4 89999999999999999999999999999999999999999999998643 4799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|++++|||||
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 99999999999999987654444444445566777888899865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 161 SGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||+.+++.+++.+++++++ |.|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999998754 9999999999999876 999999999999999998877653
No 149
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-50 Score=368.84 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=185.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~-------- 74 (321)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 5899999999987 569999999999999999999999999999999999986 4 699999988542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++. ..++.+.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 3599999999999999999999875443332 2333445677788888873 246789999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++....
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTP 238 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999975 5899999999999966 9999999999999999999886543
No 150
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-50 Score=367.89 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=184.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC---CCC--CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ---NVL--NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl---~~p--~~G~I~~~g~~~------ 74 (321)
.+||+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+.
T Consensus 1 ~~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 1 TVKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred CcEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 368999999999987 5699999999999999999999999999999999997 455 589999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++ .|+.||+.+.....+.. .....+.++++++.+++. ..++++.+||||||||++|
T Consensus 79 ~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 35999999998887 59999998765444332 223445667788888873 2478899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+++.|++++ +++|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999999985 47999999999999966 999999999999999999988654
No 151
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-50 Score=407.74 Aligned_cols=211 Identities=24% Similarity=0.386 Sum_probs=189.1
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 68999999999987 6699999999999999999999999999999999999999999999988542 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh---C-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY---G-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||+||++.+++.+|+.||+.+....+ + .+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998754322 1 223334556778899999975 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|+++..|+++++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999998779999999999999976 9999999999999999887653
No 152
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-50 Score=367.63 Aligned_cols=210 Identities=29% Similarity=0.420 Sum_probs=183.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~-------- 74 (321)
+|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 5899999999987 5699999999999999999999999999999999999763 699999988542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++ +|+.||+.+....++. ...+.++.+.++++.+++. ..++++.+||||||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 36999999998887 8999999876544443 2333455667777777753 247889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999854 7999999999999876 999999999999999999887654
No 153
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3e-50 Score=406.58 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=190.3
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------- 74 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------- 74 (321)
-++.++|+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 6 ~~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 6 TTAPPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred CCCCceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 344578999999999987 6699999999999999999999999999999999999999999999998642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+.+||+||++.+++.+|+.||+.+.... ..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3599999999999999999999875321 1233456778889999875 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998789999999999999976 99999999999999999887643
No 154
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8.5e-50 Score=365.73 Aligned_cols=210 Identities=31% Similarity=0.462 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.+. +.++|+|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~ 78 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVF 78 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEe
Confidence 478999999987 5799999999999999999999999999999999999999999999988653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+|+.+|+.||+.+....++.......+.+.++++.+++.. .++.+.+||+||+||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 79 QHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred cChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999987655444433334456677888888864 68889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 161 SGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||+.+++.++++|.+++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999998765 8999999999999876 99999999999999999988864
No 155
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-50 Score=372.99 Aligned_cols=213 Identities=27% Similarity=0.402 Sum_probs=183.8
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc----
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK---- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~---- 74 (321)
+..++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34578999999999987 569999999999999999999999999999999999987 6999999988542
Q ss_pred -------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~ 142 (321)
++++|+||++.+++ .|+.||+.+.....+... ..++.+..+++.+++. . .++++.+||+|||||++
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence 36999999999888 499999987654433322 2334556667777652 2 57889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC-----------CEEE
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK-----------GILL 210 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~-----------G~i~ 210 (321)
|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++ |+++
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 99999999999999999999999999999999999864 7999999999999976 999999996 6789
Q ss_pred EecChhHHHhh
Q psy106 211 EESPPKVLLEK 221 (321)
Q Consensus 211 ~~g~~~~l~~~ 221 (321)
+.|+++++...
T Consensus 244 ~~~~~~~~~~~ 254 (269)
T PRK14259 244 EFNETKKIFNS 254 (269)
T ss_pred EeCCHHHHHhC
Confidence 99999988654
No 156
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.7e-50 Score=360.89 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=177.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
++++|++++|++ .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 478999999974 46899999999999999999999999999999999999999999998653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+............++++.++++.+++.. .++++.+||+|||||++|||||+.+|+++||||||
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999999986533221112223455677888899865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
+|||+.++..++++|+++++ .|.|||++||+++++.. ||++++|++|++++.|+
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999875 48999999999999866 99999999999998764
No 157
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-50 Score=406.99 Aligned_cols=212 Identities=26% Similarity=0.362 Sum_probs=189.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~--------- 74 (321)
++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+.
T Consensus 3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 468999999999987 6799999999999999999999999999999999999996 899999988642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHh--C-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIY--G-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++||+||++.+++.+|+.||+.+....+ + .+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 45999999999999999999998764332 1 233344566788899999865 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+|++|||||||+|||+.++..++++|.+++++|+|||++|||++++.. |||+++|++|+++..|+++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999998779999999999999976 9999999999999999987753
No 158
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-50 Score=361.22 Aligned_cols=198 Identities=31% Similarity=0.468 Sum_probs=174.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
|+++ ||+|+|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 1 MLCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred Ccee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 3455 99999998 445 99999999 99999999999999999999999999999999988532
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++++|+||++.+++.+|+.||+.+....+ .....++++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 36999999999999999999998754322 22233456778889999865 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+||||||+|||+.+++.++++|++++++ |+|||++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999764 8999999999999976 9999999999998764
No 159
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.1e-50 Score=388.22 Aligned_cols=204 Identities=26% Similarity=0.387 Sum_probs=182.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------CeEEE
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQLGF 79 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ig~ 79 (321)
|++|+|++ .. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999987 43 4 99999999999999999999999999999999999999999988532 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+|+.+|+.||+.+..... ...+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999999999999999998764322 22333456788899999975 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||+|||+.+++.+++.|++++++ |+|||++|||++++.. ||++++|++|+++..|+++++....
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999764 8999999999999976 9999999999999999999987654
No 160
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-49 Score=366.54 Aligned_cols=211 Identities=28% Similarity=0.427 Sum_probs=182.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~-------- 74 (321)
||+++|++++|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 6999999999987 56999999999999999999999999999999999999874 89999988542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++.+|+.||+.+.....+. ..++..+.+..+++.+++. ..++++.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 3699999999999999999999875443332 2233344555555655542 247889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 162 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999864 7999999999999976 999999999999999999988654
No 161
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=366.06 Aligned_cols=213 Identities=27% Similarity=0.407 Sum_probs=184.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 2 DPKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred CceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 357999999999987 56999999999999999999999999999999999999997 69999987532
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++. |+.||+.+....++.. .+...+.++.+++.+++. ..++++.+||||||||++|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred hHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 469999999998875 9999998765443332 222344566667776653 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||||+.+|+++||||||+|||+.++..+.++|++++ +++|||++||+++++.. ||++++|++|++++.|+++++....
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999985 58999999999999977 9999999999999999999886543
No 162
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-49 Score=366.33 Aligned_cols=213 Identities=23% Similarity=0.357 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----c-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-----K------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~------- 74 (321)
+||+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ .
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 58999999999987 569999999999999999999999999999999999999999999998754 1
Q ss_pred ------CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHH
Q psy106 75 ------KQLGFMPQQIS--LYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 ------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++. +++.+|+.+|+.+...... .......+.+.++++.+++. ..++++.+|||||||||+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 25899999974 4566789999865432221 11223345677888899985 3688999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++||+++++.. ||++++|++|++++.|+++++..+
T Consensus 160 aral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999999865 58999999999999976 999999999999999999887653
No 163
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-50 Score=405.72 Aligned_cols=212 Identities=22% Similarity=0.323 Sum_probs=189.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 3 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 3 TPYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred CceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999999987 5699999999999999999999999999999999999999999999988542 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH----HhCC---CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL----IYGM---SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~----~~~~---~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++||+||++.+++.+|+.||+.+... .++. +..+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 59999999999999999999976432 1121 22344566788899999865 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 99999999999999999999999999999998779999999999999976 9999999999999999988764
No 164
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-49 Score=365.76 Aligned_cols=211 Identities=31% Similarity=0.469 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
+||+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 47999999999987 6699999999999999999999999999999999999874 899999988532
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++ +|++||+.+....++.. ....++.+.++++.+++.. .++++.+||||||||++||
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred HHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 46999999999887 89999998765443322 2233455667778777632 5788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999999999865 7899999999999866 999999999999999999887643
No 165
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-49 Score=365.34 Aligned_cols=211 Identities=27% Similarity=0.460 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 57999999999987 669999999999999999999999999999999999987 4899999988642
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++ .|+.||+.+.....+.. ....++.+.++++.+++. ..++++.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 35999999998886 79999998764443332 222345567778888873 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999864 6999999999999876 999999999999999999887643
No 166
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-49 Score=365.09 Aligned_cols=214 Identities=28% Similarity=0.424 Sum_probs=184.5
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc----
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK---- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~---- 74 (321)
...+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 2 ~~~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 2 TMEIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred CccceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 34578999999999987 669999999999999999999999999999999999975 3 489999987542
Q ss_pred -------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv 141 (321)
++++|+||++.+++. |++||+.+....++. .....++.+.++++.+++. ..++++.+||+|||||+
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred cchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH
Confidence 459999999998875 999999876554432 2223345566677777662 25788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||+.+|+++||||||+|||+.+++.+.++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999999999999999999999999999999999875 5899999999999976 99999999999999999988764
Q ss_pred h
Q psy106 221 K 221 (321)
Q Consensus 221 ~ 221 (321)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 3
No 167
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-49 Score=368.08 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=185.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 468999999999987 679999999999999999999999999999999999986 5899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++ .|+.||+.+.....+. ...+.++++.++++.+++. ..++++.+||||||||++|
T Consensus 96 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred hHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 36999999998887 5999999876543332 2333445667778888773 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+.++|++++ ++.|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999986 47999999999999866 999999999999999999988643
No 168
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.5e-50 Score=357.60 Aligned_cols=192 Identities=33% Similarity=0.502 Sum_probs=171.9
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------cCeE
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------KKQL 77 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------~~~i 77 (321)
++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4799999987 569999999999999999999999999999999999999999999998865 1469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
+|+||++.+++.+|+.||+.+.....+....+..+++.++++.++++. .++++.+||+|||||++|||||+.+|+++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999988654444444445566788899999865 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
||||+|||+.++..++++|++++++|.|||++||+++.++.||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999887799999999999987669999875
No 169
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-49 Score=364.16 Aligned_cols=211 Identities=27% Similarity=0.434 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 2 NKFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred CeEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 47999999999987 6699999999999999999999999999999999999986 599999988532
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
+.++|+||++.+++ .|+.||+.+.....+.. ....++++.++++.+++. ..++++.+|||||||||+|||
T Consensus 80 ~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 45999999999887 89999998764433322 223345566677777753 246789999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999999999999999999875 5899999999999876 999999999999999998887543
No 170
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-51 Score=353.65 Aligned_cols=222 Identities=30% Similarity=0.465 Sum_probs=203.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
++.|+++|+.|+||. ..+|++||++..+|+++.|+|.+||||||+||||.=|.+|+.|.|.++|+..
T Consensus 4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 467999999999999 6799999999999999999999999999999999999999999999987642
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYY-GLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv 141 (321)
.+.|+|||+.++|..||+.||+.-. ....+.++.+..++++.++..+|+.+ .+.+|..||||||||+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV 161 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence 3689999999999999999998643 34457788888899999999999975 6789999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||+.+|+++++|||||+|||+...++++.+++|+++|+|.+++||.+.++.. +.+++++++|.|-++|+|++++.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999987
Q ss_pred hcccccHHH
Q psy106 221 KYNMKSLED 229 (321)
Q Consensus 221 ~~~~~~l~~ 229 (321)
++..+.+..
T Consensus 242 nP~S~Rlkq 250 (256)
T COG4598 242 NPQSPRLKQ 250 (256)
T ss_pred CCCCHHHHH
Confidence 765554443
No 171
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.4e-49 Score=364.18 Aligned_cols=191 Identities=30% Similarity=0.506 Sum_probs=170.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEEc-CCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFMP-QQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v~-Q~~~l~~~ltv~ 93 (321)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+| |++.+++.+|+.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4699999999999999999999999999999999999999999999988642 4699998 557788889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy106 94 EMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172 (321)
Q Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~ 172 (321)
||+.+....++....+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 99987665555544455566778888888865 68889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 173 NHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 173 ~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
++|+++++ .|.|||++||+++++.. ||++++|++|++++.|
T Consensus 194 ~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 194 NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999975 48999999999999976 9999999999998654
No 172
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.8e-49 Score=364.21 Aligned_cols=209 Identities=21% Similarity=0.311 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC----CccEEEECCccc-------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL----NGGNIHLSITSK-------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p----~~G~I~~~g~~~-------~~ 76 (321)
+|+++|++++| + +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. +.
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 69999999999 4 4699999999999999999999999999999999999999 999999998652 46
Q ss_pred EEEEcCCCC--CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 77 LGFMPQQIS--LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 77 ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++|+||++. +.+.+|+.+++.+.....+.... .+++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 999999984 45667999988765443333222 356777888888864 4788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++|||||||+|||+.++..++++|+++++ .|.|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999999999875 48999999999999976 999999999999999999988654
No 173
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-49 Score=370.93 Aligned_cols=211 Identities=28% Similarity=0.450 Sum_probs=184.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 468999999999987 569999999999999999999999999999999999987 6899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+++. |+.||+.+.....+... ...+++.++++.+++. ..++++.+||||||||++||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 469999999988875 99999987655444332 3345677788888873 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEE-EEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIG-LMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~-il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|++|||||||+|||+.+++.++++|++++++ .|||++||+++++.. |||++ +|++|++++.|+++++..+
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999764 899999999999976 99975 6799999999999887654
No 174
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-49 Score=368.36 Aligned_cols=212 Identities=22% Similarity=0.371 Sum_probs=182.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 468999999999987 569999999999999999999999999999999999987 6999999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCC----cc-ccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHL----NH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l----~~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++ .|+.||+.+....++.. ....++.+.++++.+++ .. .++++.+||||||||++|
T Consensus 100 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 46999999999887 49999998765443332 22223444555555532 22 578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999865 7999999999999876 999999999999999999888654
No 175
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-49 Score=362.28 Aligned_cols=212 Identities=31% Similarity=0.422 Sum_probs=182.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 568999999999987 679999999999999999999999999999999999875 5 599999988642
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.+||+||++.+++ .|+.+|+.+.....+.. ....++.+.+.++.+++. ..++++.+||+|||||++|
T Consensus 81 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred HHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 46999999998888 69999998765444322 222234455566666542 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.+++.+.++|+++++ +.|||++||+++++.. |||+++|++|+++..|++.++...
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 5899999999999976 999999999999999999887654
No 176
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-49 Score=407.90 Aligned_cols=216 Identities=25% Similarity=0.349 Sum_probs=191.4
Q ss_pred cceEEEEeEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--
Q psy106 6 KCAIRVENAYKRHSSK---------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~---------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-- 74 (321)
.++|+++|+++.|+.. ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 4689999999999621 13599999999999999999999999999999999999999999999988532
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQR 139 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQ 139 (321)
++|+|+||++ .+++.+||.||+.+....++. ...+.++++.++++.+++. . .++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 3699999997 588999999999876544443 2334456778899999995 3 68999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++++.. |||+++|++|++++.|++++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999999754 9999999999999977 99999999999999999999
Q ss_pred HHhh
Q psy106 218 LLEK 221 (321)
Q Consensus 218 l~~~ 221 (321)
+...
T Consensus 551 i~~~ 554 (623)
T PRK10261 551 VFEN 554 (623)
T ss_pred HhcC
Confidence 8754
No 177
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-49 Score=372.40 Aligned_cols=218 Identities=28% Similarity=0.410 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-C----CccEEEECCccc------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-L----NGGNIHLSITSK------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p----~~G~I~~~g~~~------ 74 (321)
.++++||+..|... ...+++||||++++||++||+|.||||||||.+.|+|+++ | .+|+|.++|++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 37899999999642 2469999999999999999999999999999999999997 4 579999998742
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG-M-SLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQR 139 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQ 139 (321)
++|+|+||+| +|.|-+|+.+.+.-....+. . .+++.++++.++++.++++. .++++++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 5899999998 58888999988876666543 3 35667788999999999964 48899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||.||.||+.+|++||.||||++||...+.+++++|+++++ .|+|+|++|||+..+.. ||||+||..|+|++.|++++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999999999999999999985 79999999999999976 99999999999999999999
Q ss_pred HHhhcccc
Q psy106 218 LLEKYNMK 225 (321)
Q Consensus 218 l~~~~~~~ 225 (321)
++.+...+
T Consensus 241 i~~~P~HP 248 (316)
T COG0444 241 IFKNPKHP 248 (316)
T ss_pred HhcCCCCh
Confidence 98775543
No 178
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-49 Score=367.46 Aligned_cols=212 Identities=30% Similarity=0.434 Sum_probs=184.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 368999999999987 569999999999999999999999999999999999987 4899999987542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++. |+.||+.+.....+.. ....++.+.++++.+++. ..++++.+||||||||++|
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 469999999998886 9999998765444332 223345567777877773 2478899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 9999999999999999999999999999999999975 7899999999999976 999999999999999999887643
No 179
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.2e-50 Score=364.51 Aligned_cols=209 Identities=28% Similarity=0.456 Sum_probs=175.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999974325699999999999999999999999999999999999999999999998642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++ .|+.||+.+... ........+. +..+++.+ +++. .++++.+|||||||||+|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999998875 699999976431 1112111111 12233333 3332 46788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||||||+|||+.++..+.+.|++++ +|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999986 48999999999999977999999999999999999887654
No 180
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-49 Score=367.99 Aligned_cols=212 Identities=30% Similarity=0.391 Sum_probs=185.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 578999999999987 6799999999999999999999999999999999999985 799999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+|+ +|+.||+.+...... ....+..+.+.++++.+++.. .++.+.+||||||||++||
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 46999999999888 899999987543322 233344455666778888742 4678999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.+++.+.+.|+++++ ++|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 4899999999999876 999999999999999999988654
No 181
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-49 Score=409.24 Aligned_cols=217 Identities=22% Similarity=0.309 Sum_probs=192.0
Q ss_pred CcceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---------
Q psy106 5 DKCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS--------- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~--------- 73 (321)
..+||+++|+++.|++. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 35799999999999631 1469999999999999999999999999999999999999999999987630
Q ss_pred --------------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCc
Q psy106 74 --------------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGS 132 (321)
Q Consensus 74 --------------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~ 132 (321)
.++|||+||++ .+++.+||.||+.+....+ +.+..+.++++.++++.+++.. .++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 13699999998 6888899999999876543 4555556677888999999952 5889999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEE
Q psy106 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~ 210 (321)
|||||||||+|||||+.+|++|||||||++||+.++.+++++++++++ .|+|||++|||++++.. |||+++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 999999999999999999999999999999999999999999999975 49999999999999976 9999999999999
Q ss_pred EecChhHHHhh
Q psy106 211 EESPPKVLLEK 221 (321)
Q Consensus 211 ~~g~~~~l~~~ 221 (321)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (623)
T PRK10261 249 ETGSVEQIFHA 259 (623)
T ss_pred ccCCHHHhhcC
Confidence 99999888653
No 182
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-49 Score=370.91 Aligned_cols=211 Identities=23% Similarity=0.332 Sum_probs=184.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------ccEEEECCccc-----
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--------GGNIHLSITSK----- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~--------~G~I~~~g~~~----- 74 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 5899999999987 56999999999999999999999999999999999999998 99999998642
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+.++|+||++.+++.+|+.||+.+..... +....+..+.+..+++.+++.. .++++.+|||||||||+|||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 35899999987666799999998743211 1111233455777888899865 68899999999999999999
Q ss_pred HHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 146 TLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 146 aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
||+ .+|++|||||||+|||+.++..++++|++++++ |+|||++||+++++.. ||++++|++|++++.|+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecC
Confidence 999 599999999999999999999999999998765 8999999999999976 99999999999999999
Q ss_pred hhHHHh
Q psy106 215 PKVLLE 220 (321)
Q Consensus 215 ~~~l~~ 220 (321)
++++.+
T Consensus 239 ~~~~~~ 244 (272)
T PRK13547 239 PADVLT 244 (272)
T ss_pred HHHHcC
Confidence 888753
No 183
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-49 Score=369.07 Aligned_cols=213 Identities=29% Similarity=0.421 Sum_probs=184.3
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc-----
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK----- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~----- 74 (321)
..++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 3568999999999987 569999999999999999999999999999999999864 4999999988531
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
+++||+||++.+++. |+.||+.+....++.. ....++.+.++++.+++. ..++++.+||||||||++
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 469999999998875 9999998765443332 223345566677777762 257889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++++.. |||+++|++|+++..|+++++.++
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999865 6899999999999976 999999999999999999888654
No 184
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-48 Score=363.54 Aligned_cols=212 Identities=26% Similarity=0.447 Sum_probs=185.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 57999999999987 56999999999999999999999999999999999999985 89999987541
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++ +|+.||+.+.....+. +..+..+.+..+++.+++. ..++++.+||||||||++||
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 35999999998888 8999999876443332 2333345567778888763 24788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeC-----CEEEEecChhH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRK-----GILLEESPPKV 217 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~-----G~i~~~g~~~~ 217 (321)
|||+.+|+++||||||+|||+.++..+.+.|+++++ +|.|||++||+++++.. |||+++|++ |+++..|++++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence 999999999999999999999999999999999874 58999999999999976 999999999 99999999998
Q ss_pred HHhh
Q psy106 218 LLEK 221 (321)
Q Consensus 218 l~~~ 221 (321)
+.+.
T Consensus 243 ~~~~ 246 (261)
T PRK14258 243 IFNS 246 (261)
T ss_pred HHhC
Confidence 8654
No 185
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.8e-49 Score=366.90 Aligned_cols=213 Identities=25% Similarity=0.361 Sum_probs=186.5
Q ss_pred ceEEEEeEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----
Q psy106 7 CAIRVENAYKRHSSK-------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----- 74 (321)
+||+++|+++.|+++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 479999999999730 15699999999999999999999999999999999999999999999988642
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~ 142 (321)
++++|+||++ .+++..|+.+|+.+.... ......+..+.++++++.+++. . .++++.+||+|||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 4699999997 467788999998764332 2333334445678888999985 3 58899999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||+++++.. ||++++|++|++++.|+++++.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999999999999999875 48999999999999976 9999999999999999998875
No 186
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-49 Score=364.20 Aligned_cols=214 Identities=24% Similarity=0.393 Sum_probs=187.4
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC------cc-----
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI------TS----- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g------~~----- 73 (321)
.+|+|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 3689999999999998 6799999999999999999999999999999999999999997776654 32
Q ss_pred ----cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 74 ----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 74 ----~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
.++++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++. ..++++..||+|||||++|
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 14699999999999999999999876543332 2334445677888888874 2477899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999864 6999999999999966 999999999999999999988654
No 187
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.8e-49 Score=393.57 Aligned_cols=219 Identities=28% Similarity=0.398 Sum_probs=196.9
Q ss_pred CcceEEEEeEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--
Q psy106 5 DKCAIRVENAYKRHSS---------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~---------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-- 73 (321)
..|+++++||+|+|.. +...+++||||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4678999999999983 22579999999999999999999999999999999999999999999998865
Q ss_pred ---------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHH
Q psy106 74 ---------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQR 139 (321)
Q Consensus 74 ---------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQ 139 (321)
.+++-++||+| ++.|.+||.+++......++.. ..+.++++.++++..++.. ++++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 14688888887 6899999999999887766432 4555677899999999974 69999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|+||||||+.+|++|++|||||.||+..+.++.++|+++++ .|.|.+++|||++.+++ ||||++|++|+|++.|+.++
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999985 59999999999999988 99999999999999999998
Q ss_pred HHhhcc
Q psy106 218 LLEKYN 223 (321)
Q Consensus 218 l~~~~~ 223 (321)
+++...
T Consensus 517 v~~~p~ 522 (539)
T COG1123 517 VFENPQ 522 (539)
T ss_pred HhcCCC
Confidence 876543
No 188
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=362.61 Aligned_cols=211 Identities=24% Similarity=0.395 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 57999999999987 5699999999999999999999999999999999999985 489999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+|+ +|+.||+.+.....+ .+.....+.+.++++.+++. ..++++.+||+|||||++||
T Consensus 84 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred HhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 36999999999887 899999987654332 23333345566777777762 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe-----CCEEEEecChhHH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR-----KGILLEESPPKVL 218 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~-----~G~i~~~g~~~~l 218 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|+ +|++++.|+++++
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 999999999999999999999999999999999865 6999999999999976 99999998 5999999999988
Q ss_pred Hhh
Q psy106 219 LEK 221 (321)
Q Consensus 219 ~~~ 221 (321)
.+.
T Consensus 242 ~~~ 244 (259)
T PRK14260 242 FSN 244 (259)
T ss_pred hcC
Confidence 653
No 189
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=360.88 Aligned_cols=209 Identities=27% Similarity=0.440 Sum_probs=181.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc---------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK--------- 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~--------- 74 (321)
-+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999987 679999999999999999999999999999999999986 4799999988532
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHHH
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++. |+.||+.+....++. .....++.+..+++.+++.. .++++.+||||||||++|||
T Consensus 84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 369999999988886 999999876433332 22233455677888888742 46788999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999985 48999999999999976 999999999999999999887654
No 190
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.5e-49 Score=397.85 Aligned_cols=214 Identities=27% Similarity=0.437 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC-Ccc--------
Q psy106 6 KCAIRVENAYKRHSS---KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-ITS-------- 73 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~---~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~-g~~-------- 73 (321)
.+||+++|++++|++ +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 468999999999952 22469999999999999999999999999999999999999999999995 421
Q ss_pred -------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------ccCCCCccChHHHHH
Q psy106 74 -------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------FKRKCGSLSGGQQRR 140 (321)
Q Consensus 74 -------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------~~~~~~~LSgGqkQR 140 (321)
.+++||+||++.+++.+|+.||+.+.... ..+....++++.++++.+++.. .++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 14599999999999999999999875332 2233333456778889999853 578999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++|||++++.. |||+++|++|++++.|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999975 49999999999999977 999999999999999998887
Q ss_pred Hh
Q psy106 219 LE 220 (321)
Q Consensus 219 ~~ 220 (321)
.+
T Consensus 516 ~~ 517 (520)
T TIGR03269 516 VE 517 (520)
T ss_pred Hh
Confidence 54
No 191
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-49 Score=364.91 Aligned_cols=211 Identities=28% Similarity=0.442 Sum_probs=181.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 8 ~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 8 ETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred ceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 368999999999987 569999999999999999999999999999999999976 4899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+++||+||++.+++ .|+.||+.+.....+.. ....+++..+++..++. ..++++.+||||||||++||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred hHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 36999999998887 49999998765433222 12234455566666652 24778999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe---------CCEEEEecC
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR---------KGILLEESP 214 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~---------~G~i~~~g~ 214 (321)
|||+.+|++|||||||+|||+.++..++++|.++++ ++|||++||+++++.. |||+++|+ +|++++.|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 999999999999999999999999999999999875 5899999999999976 99999998 899999999
Q ss_pred hhHHHhh
Q psy106 215 PKVLLEK 221 (321)
Q Consensus 215 ~~~l~~~ 221 (321)
++++.+.
T Consensus 243 ~~~~~~~ 249 (264)
T PRK14243 243 TEKIFNS 249 (264)
T ss_pred HHHHHhC
Confidence 9998654
No 192
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=365.59 Aligned_cols=211 Identities=27% Similarity=0.442 Sum_probs=181.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 469999999999987 5699999999999999999999999999999999999863 699999988532
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+++. |+.||+.+.....+.. ...++.+..+++.+++. ..++++.+|||||||||+||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 469999999988874 9999998764433221 12233455566666652 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe---------CCEEEEecC
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR---------KGILLEESP 214 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~---------~G~i~~~g~ 214 (321)
|||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++.. |||+++|+ +|++++.|+
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 999999999999999999999999999999999875 6899999999999976 99999998 899999999
Q ss_pred hhHHHhh
Q psy106 215 PKVLLEK 221 (321)
Q Consensus 215 ~~~l~~~ 221 (321)
++++...
T Consensus 253 ~~~~~~~ 259 (274)
T PRK14265 253 TEQMFGS 259 (274)
T ss_pred HHHHHhC
Confidence 9988654
No 193
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.6e-49 Score=358.25 Aligned_cols=204 Identities=20% Similarity=0.258 Sum_probs=177.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
.++|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++
T Consensus 5 ~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 468999999999987 5699999999999999999999999999999999999999999999998642 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++ .|+.||+.+....++... ..+++.++++.+++. . .++++.+||+|||||++|||||+.+|+++
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998887 499999987544433221 234566788888984 3 58899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEe-CCEEEEecC
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMR-KGILLEESP 214 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~-~G~i~~~g~ 214 (321)
||||||+|||+.++..+.++|+++++ .|.|||++||++++++.||++++|+ ++..+++|+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999875 5899999999999997799999995 444445543
No 194
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.6e-49 Score=439.72 Aligned_cols=218 Identities=28% Similarity=0.506 Sum_probs=200.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
..+|+++|++|+|+++.+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 468999999999986335699999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|++|++.+.+..++.+.++.+++++++++.+++.. .++++++|||||||||+||+||+.+|+++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998888777766666677888999999965 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||+||||.+++.++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++++++.
T Consensus 2095 DEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999998779999999999999987 99999999999999999999977653
No 195
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-49 Score=365.99 Aligned_cols=212 Identities=23% Similarity=0.373 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGF 79 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~ 79 (321)
+.+|+++|++++|+++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++++|
T Consensus 4 ~~~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 4 QAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred hceEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 3479999999999632 5699999999999999999999999999999999999999999999998653 36999
Q ss_pred EcCCCCCC--CCCCHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 80 MPQQISLY--PEFTIDEMICYYGL----IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 80 v~Q~~~l~--~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+||++.++ ...++.+++.+... .........++++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99998653 23468888764311 011111223455677888888865 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++||||||+|||+.+++.+.++|++++++|+|||++||+++++.. ||+++++ +|+++..|+++++.
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999998779999999999999876 9999777 89999999998875
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-48 Score=353.87 Aligned_cols=201 Identities=28% Similarity=0.369 Sum_probs=178.7
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 9 IRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
|+++|+++.|+++. +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997521 4599999999999999999999999999999999999999999999988642
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+.++|+||++.+++++|+.||+.+....+. ....+..+.+.++++.+++.. .++++.+||+|||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999988655442 334445566788899999865 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
++||||||+|||+.++..+.++|+++++ .|+|||++||+++..+.||++++|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999875 58999999999986656999999999986
No 197
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.8e-49 Score=396.90 Aligned_cols=216 Identities=23% Similarity=0.343 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc----
Q psy106 6 KCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK---- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~---- 74 (321)
++||+++|++++|+++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 4589999999999731 14699999999999999999999999999999999999986 799999988541
Q ss_pred ---------CeEEEEcCCCC--CCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHH
Q psy106 75 ---------KQLGFMPQQIS--LYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQ 138 (321)
Q Consensus 75 ---------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqk 138 (321)
+++||+||++. +++.+|+.+|+.+.... .+.+..+..+++.++++.+++.. .++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 36999999975 67778999998765432 24444455677888999999853 4789999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+|||||+.+|++|||||||++||+.++..++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999754 8999999999999976 9999999999999999998
Q ss_pred HHHhh
Q psy106 217 VLLEK 221 (321)
Q Consensus 217 ~l~~~ 221 (321)
++...
T Consensus 243 ~~~~~ 247 (529)
T PRK15134 243 TLFSA 247 (529)
T ss_pred HHhhC
Confidence 88653
No 198
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.6e-49 Score=355.90 Aligned_cols=206 Identities=30% Similarity=0.424 Sum_probs=177.9
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc------Ce
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~------~~ 76 (321)
.+.++|++++|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 46899999999764 2579999999999999999999999999999999999999 9999999998653 57
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCC---CHHHHHHHHHH-HHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQQIKEKAEY-LQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~-ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++|+||++.+++.+|+.||+.+....... ......+++.. .++.+++.. .++.+.+||+|||||++|||||+.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999876543321 11222233444 777778765 57889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh-hHHhh-cCEEEEEeCCEEEEec
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI-DEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l-~~~~~-~drv~il~~G~i~~~g 213 (321)
+++||||||+|||+.++..+++++++++++|.|+|++||++ +++.. ||++++|++|++++.|
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999887799999999999 57765 9999999999998764
No 199
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-49 Score=358.84 Aligned_cols=209 Identities=27% Similarity=0.403 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 578999999986323699999999999999999999999999999999999999999999998542 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-----KAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++ .|++||+.+.... .......+ .+.+.++.+ ++.. .++++.+||+|||||++|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998886 6999999865321 11121111 123334433 3433 56789999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||||||+|||+.++..+.+.|++++ ++.|||++||+++++..||++++|++|++++.++++++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999999986 48999999999999977999999999999999998887544
No 200
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-49 Score=395.37 Aligned_cols=208 Identities=22% Similarity=0.320 Sum_probs=185.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 2 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 2 SPYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred CceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 468999999999987 5699999999999999999999999999999999999999999999988542 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH--HhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL--IYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++||+||++.+++.+|+.||+.+... ..+ ....+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 69999999999999999999987532 112 223444566788899999864 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. |||+++|++|+++..++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999998789999999999999976 999999999999876653
No 201
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.4e-49 Score=397.39 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=187.9
Q ss_pred cceEEEEeEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--
Q psy106 6 KCAIRVENAYKRHSS---------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~---------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-- 74 (321)
.+||+++|+++.|++ +.+.+|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|.+.
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 468999999999962 11469999999999999999999999999999999999984 899999988532
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQ 138 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqk 138 (321)
+++||+||++ .+++++|+.||+.+....++ .+..+.++++.++++.+++. . .++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 3599999997 48888999999987654332 23334456677889999996 3 6899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+|||||+.+|++|||||||+|||+.+++.++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999864 8999999999999976 9999999999999999999
Q ss_pred HHHhh
Q psy106 217 VLLEK 221 (321)
Q Consensus 217 ~l~~~ 221 (321)
++.+.
T Consensus 512 ~~~~~ 516 (529)
T PRK15134 512 RVFAA 516 (529)
T ss_pred HHhcC
Confidence 88653
No 202
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.5e-48 Score=355.74 Aligned_cols=197 Identities=25% Similarity=0.339 Sum_probs=173.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC----CccEEEECCccc-------CeEEEEcCCCC--CCCCCC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL----NGGNIHLSITSK-------KQLGFMPQQIS--LYPEFT 91 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p----~~G~I~~~g~~~-------~~ig~v~Q~~~--l~~~lt 91 (321)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. ++++|+||++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 899999998652 47999999985 567789
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc---c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN---H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~---~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
+.+|+.+.....+....+..+++.++++.+++. . .++++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 999997655443333334456678889999986 2 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 168 AEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 168 ~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++.+++.|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999976 48999999999999976 999999999999999999988653
No 203
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-48 Score=359.59 Aligned_cols=213 Identities=30% Similarity=0.422 Sum_probs=183.4
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCcc------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITS------ 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~------ 73 (321)
...+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 13 ~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3578999999999987 5699999999999999999999999999999999999875 79999997642
Q ss_pred -------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHcCCc-----cccCCCCccChHHHHH
Q psy106 74 -------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-QIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRR 140 (321)
Q Consensus 74 -------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQR 140 (321)
.+.+||+||++.+++. |+.||+.+.....+.... ..++.+..+++.+++. ..++++.+||+|||||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 1469999999998886 999999876543333222 2234566666766652 2468899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. |||+++|++|++++.|+.+++.
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999875 6899999999999976 9999999999999999998876
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
..
T Consensus 249 ~~ 250 (265)
T PRK14252 249 IK 250 (265)
T ss_pred hC
Confidence 54
No 204
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.9e-49 Score=394.47 Aligned_cols=209 Identities=26% Similarity=0.363 Sum_probs=185.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc----------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK----------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~----------~ 75 (321)
+|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+.+| ++|+|.++|.+. +
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4899999999987 5699999999999999999999999999999999999987 799999988542 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHh--C--CCHHHHHHHHHHHHHHcCCcc-c-cCCCCccChHHHHHHHHHHHHhc
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIY--G--MSLQQIKEKAEYLQALLHLNH-F-KRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~ll~~~~l~~-~-~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
++||+||++.+++.+|+.||+.+..... + ...++..+++.++++.+++.. . ++++++|||||||||+|||||+.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 6999999999999999999998754322 1 223344566788899999864 3 57799999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
+|++|||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999998789999999999999976 999999999999999887654
No 205
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.2e-48 Score=357.41 Aligned_cols=210 Identities=22% Similarity=0.289 Sum_probs=181.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc--------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK--------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~--------~ 75 (321)
.+||+++|+++.|++ +.+|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.++|.+. .
T Consensus 5 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 5 KPILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred CceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 468999999999987 5699999999999999999999999999999999998 579999999988642 1
Q ss_pred --eEEEEcCCCCCCCCCCHHHHHHHHHHHhC----C---CHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHH
Q psy106 76 --QLGFMPQQISLYPEFTIDEMICYYGLIYG----M---SLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSL 143 (321)
Q Consensus 76 --~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~----~---~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~i 143 (321)
.++|+||++.+++.+|+.+|+.+...... . ...+..+++.++++.+++. . .++++. +|||||||||+|
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 37899999999999999999876433211 1 1122335567788888886 3 577776 599999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~ 217 (321)
||||+.+|+++||||||+|||+.++..++++|++++++|.|||++||+++++.. ||++++|++|++++.|+++.
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999998779999999999999964 89999999999999998873
No 206
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.6e-48 Score=394.46 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=186.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEEC----------------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLS---------------- 70 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~---------------- 70 (321)
|+++|++++|++ +.+|+|+||++++||++||+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999987 56999999999999999999999999999999999997 7999999986
Q ss_pred -------Ccc-------------------cCeEEEEcCC-CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Q psy106 71 -------ITS-------------------KKQLGFMPQQ-ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL 123 (321)
Q Consensus 71 -------g~~-------------------~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l 123 (321)
|.+ .+++||+||+ +.+++.+|+.||+.+.....+.+..+.++++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 210 1459999997 6788889999999886555555555556678889999999
Q ss_pred cc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCE
Q psy106 124 NH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHM 200 (321)
Q Consensus 124 ~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~dr 200 (321)
+. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ .|+|||++|||++++.. ||+
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 75 6889999999999999999999999999999999999999999999999999964 59999999999999976 999
Q ss_pred EEEEeCCEEEEecChhHHHh
Q psy106 201 IGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 201 v~il~~G~i~~~g~~~~l~~ 220 (321)
+++|++|+++..|+++++..
T Consensus 239 i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 239 AIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEEEeCCEEeeecCHHHHHH
Confidence 99999999999999887754
No 207
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.3e-49 Score=357.84 Aligned_cols=193 Identities=30% Similarity=0.384 Sum_probs=170.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+.+|+||++.+++.+|+.||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999998654 236899999999999999999987532
Q ss_pred H--hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 102 I--YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 102 ~--~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
. .+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 1 22333444556778899999865 68899999999999999999999999999999999999999999999999998
Q ss_pred Hh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 179 AE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 179 ~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
++ .|+|||++||+++++.. ||++++|++|++++.|++.++
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 75 48999999999999876 999999999999998876654
No 208
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8.6e-49 Score=356.61 Aligned_cols=200 Identities=22% Similarity=0.334 Sum_probs=174.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.. +..+...+++
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---~~~~~~~~~~ 97 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS---LLGLGGGFNP 97 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch---hhcccccCCC
Confidence 678888999988 67999999999999999999999999999999999999999999999987532 2222345677
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
.+|+.||+.+....++....+.++++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||+|||+.+
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 8999999987765554444444556777888888865 688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 168 AEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 168 ~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
++.+++.|++++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999988778999999999999976 9999999999998754
No 209
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-48 Score=349.55 Aligned_cols=192 Identities=25% Similarity=0.262 Sum_probs=171.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 5899999999987 5699999999999999999999999999999999999999999999998652 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
++|++.+++.+|+.||+.+....++. ...++++.+++.+++.. .++++.+||||||||++|||||+++|+++||||
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 155 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999887654432 22356777889999865 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhc-CEEEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKS-HMIGLM 204 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~-drv~il 204 (321)
||+|||+.++..++++|++++++|.|||++||+++++..| +|++.+
T Consensus 156 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 156 PFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999887789999999999999775 577665
No 210
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-48 Score=356.22 Aligned_cols=211 Identities=28% Similarity=0.441 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------- 74 (321)
.+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 2 ~~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 2 YRIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred cEEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 36899999999987 569999999999999999999999999999999999864 4899999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+|+. |+.||+.+....++. ..+..++++.++++.+++. ..++++.+||+|||||++||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 469999999998875 999999876443332 2233456677788888763 24788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999864 7999999999999977 999999999999999999988544
No 211
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-48 Score=359.97 Aligned_cols=202 Identities=25% Similarity=0.391 Sum_probs=177.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
+||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..++|+||++.+
T Consensus 3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~ 78 (251)
T PRK09544 3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYL 78 (251)
T ss_pred cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEecccccc
Confidence 58999999999987 56999999999999999999999999999999999999999999999874 469999999887
Q ss_pred CCCC--CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy106 87 YPEF--TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 87 ~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL 163 (321)
++.+ |+.+++.+. .+.. .+++..+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 79 ~~~l~~~~~~~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 79 DTTLPLTVNRFLRLR---PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred ccccChhHHHHHhcc---cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 7764 677766432 1111 234567788888865 68899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+.++..+++.|++++++ |.|||++||+++++.. ||++++|++ ++++.|+++++..
T Consensus 152 D~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 999999999999998765 8999999999999976 999999965 7999999988754
No 212
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.4e-49 Score=341.10 Aligned_cols=207 Identities=28% Similarity=0.386 Sum_probs=189.7
Q ss_pred CcceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------
Q psy106 5 DKCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------- 74 (321)
....|++++++|..+.. ...+|++|+|.|++||.++|+||||||||||+-+++|+..|++|+|.+.|++.
T Consensus 3 ~~~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 3 AENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred ccceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 34479999999987643 36799999999999999999999999999999999999999999999988652
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+++|||||.+.+.|+||..||+..+..+.+-+..+.+..+..+++.+++.. ++.+|.+|||||||||+||||++
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc
Confidence 689999999999999999999999998887555556677888999999976 68899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhhcCEEEEEeCCEEEE
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLE 211 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~~drv~il~~G~i~~ 211 (321)
..|++|+.||||.+||...-.++.+++-.++ +.|+|.+++|||...+.+|+|.+.|++|+++.
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999987 67999999999999999999999999999975
No 213
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-48 Score=350.36 Aligned_cols=196 Identities=20% Similarity=0.227 Sum_probs=175.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGF 79 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~ 79 (321)
+++|+++|++++|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|
T Consensus 9 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 9 PPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred cceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 478999999999987 5699999999999999999999999999999999999999999999998643 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++.+|+.||+.+....++.. ..+.+..+++.+++.. .++++.+||+|||||++||||++.+|+++||||
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999899999998765443322 2345567788888864 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
||+|||+.+++.+++++++++++|.|||++|||++++.. ||++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999988789999999999999976 999998864
No 214
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.6e-48 Score=352.14 Aligned_cols=197 Identities=23% Similarity=0.339 Sum_probs=172.2
Q ss_pred eEEEEeEEEEeCCC-----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC--Cc--c-----
Q psy106 8 AIRVENAYKRHSSK-----LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS--IT--S----- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-----~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~--g~--~----- 73 (321)
||+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 58999999999631 1369999999999999999999999999999999999999999999997 32 1
Q ss_pred --------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHH
Q psy106 74 --------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 74 --------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~i 143 (321)
.+++||+||++.+++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||+|||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 1369999999999999999999987554444443444566778888899864 377899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLM 204 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il 204 (321)
||||+.+|+++||||||+|||+.+++.+.+.|++++++|+|||++||+++++.. |||++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999998779999999999999976 9999865
No 215
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-48 Score=369.61 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=185.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
..+|+++|++++|.++.+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45899999999996433569999999999999999999999999999999999986 5799999988753
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ-IKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++ .|++||+.|.....+....+ .++.+..+++.+++. ..++++.+||||||||++|
T Consensus 158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 46999999999885 79999999765443333222 233456667777652 2478899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|||++||+++++.. |||+++|++|++++.|+++++.+..
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999999999998875 6999999999999987 9999999999999999999987654
Q ss_pred c
Q psy106 223 N 223 (321)
Q Consensus 223 ~ 223 (321)
.
T Consensus 316 ~ 316 (329)
T PRK14257 316 K 316 (329)
T ss_pred C
Confidence 3
No 216
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.3e-48 Score=357.04 Aligned_cols=208 Identities=27% Similarity=0.407 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 9 IRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
|+++|+++.|++. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999752 14599999999999999999999999999999999999999999999998542 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+++ .|+.||+.+..... ...+..+. +..+++.+ ++.. .++++.+|||||||||+|||||+.+
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999998876 69999997643211 11111111 11222222 2332 4677899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.||++++|++|++++.++++++..
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999987 7999999999999997799999999999999999887754
No 217
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-48 Score=392.24 Aligned_cols=206 Identities=21% Similarity=0.345 Sum_probs=183.4
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEEEE
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLGFM 80 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig~v 80 (321)
++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4789999987 5699999999999999999999999999999999999999999999998642 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHH-HhC--CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 81 PQQISLYPEFTIDEMICYYGL-IYG--MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~-~~~--~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||++.+++.+||.||+.+... ..+ ....+..++++++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999986532 112 123334456778888898864 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|+++..|+++++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999998789999999999999976 999999999999999998775
No 218
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-48 Score=352.46 Aligned_cols=197 Identities=27% Similarity=0.409 Sum_probs=167.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++..+.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 789999999975324599999999999999999999999999999999999999999999998642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccC-----------CCCccChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKR-----------KCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~-----------~~~~LSgGqkQRv~iA~aL 147 (321)
+||++.+++ .|+.||+.+.... .. .+.+.++++.+++.. .++ .+.+||||||||++|||||
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 999998886 6999998764211 11 123445566666643 333 3479999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
+.+|++|||||||+|||+.++..++++|++++++ +|||++||++++++.||++++|++|++++.|
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999998764 8999999999988669999999999997653
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=356.53 Aligned_cols=213 Identities=23% Similarity=0.366 Sum_probs=185.3
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc----
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK---- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~---- 74 (321)
...+.+.+++++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 4 EAPIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred CCCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 34578999999999987 6799999999999999999999999999999999999986 799999988642
Q ss_pred -------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~ 142 (321)
+.++|+||++.++ .+|+.||+.+....++. ..+..+.+.++++.+++.. .++++.+||+|||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 3599999999888 58999999876544332 2233456777888888732 35678999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe--------CCEEEEec
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR--------KGILLEES 213 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~--------~G~i~~~g 213 (321)
|||||+++|++|||||||+|||+.++.+++++|++++ +++|+|++||+++++.. |||+++|+ +|++++.|
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999986 47999999999999876 99999996 89999999
Q ss_pred ChhHHHhh
Q psy106 214 PPKVLLEK 221 (321)
Q Consensus 214 ~~~~l~~~ 221 (321)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99988654
No 220
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.2e-48 Score=385.40 Aligned_cols=301 Identities=22% Similarity=0.260 Sum_probs=226.6
Q ss_pred ceEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC----ccEEEECCccc------
Q psy106 7 CAIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN----GGNIHLSITSK------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~----~G~I~~~g~~~------ 74 (321)
++|+++||++.|.... ..+++||||+|++||++||+|.|||||||+.++|+|++++. +|+|.++|.+.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 4899999999996432 35999999999999999999999999999999999999987 89999998642
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-c--cCCCCccChHHHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-F--KRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-~--~~~~~~LSgGqkQRv 141 (321)
++|+|+||+| .+-|-+|+.+.+.-....++ ...++.++++.++++.+++++ . +++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 6799999998 46666899888876555554 446778888999999999975 2 359999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
.||+||+.+|++||+||||++||+..+.+++++|++++ +.|+++|++|||+..+.+ ||||++|++|++++.|++++++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999998 579999999999999977 9999999999999999999999
Q ss_pred hhcccccHHHHHHHhhhcchhhHHHhhhccc---ccchhhhhHHHHHHhhcCCc-----ccCccchhhhhhcCceeeeEE
Q psy106 220 EKYNMKSLEDVFLLLSSKQQHDRIEQRRKSF---LWPIQAIQEHTRYLANFLPL-----TYPIDSFRSIVFRGFDIFHWQ 291 (321)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~ 291 (321)
+++..+--................ ...... ..++-.+.. +...... .-....++++....+++...+
T Consensus 244 ~~p~hpYT~~Ll~a~p~~~~~~~~-~~~~~~~~~~~~ll~V~~----l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE 318 (539)
T COG1123 244 SNPQHPYTRGLLAAVPRLGDEKII-RLPRRGPLRAEPLLSVRN----LSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318 (539)
T ss_pred hccCCcccHHHHhhCCCccccccc-ccccccccccCceeEeee----eeeeeccccccccccccceeeeeeeeeEecCCC
Confidence 876543222211111110000000 000000 000000100 1111110 001234677888899999999
Q ss_pred EEeeeecchhhHHHHHHHHHhh
Q psy106 292 VYYGFLSSTGWIVGLTLVCWIL 313 (321)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~ 313 (321)
++ |+.|--|-==.++.=++++
T Consensus 319 ~l-glVGeSGsGKSTlar~i~g 339 (539)
T COG1123 319 TL-GLVGESGSGKSTLARILAG 339 (539)
T ss_pred EE-EEECCCCCCHHHHHHHHhC
Confidence 99 9998776544444333333
No 221
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-48 Score=393.25 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=185.0
Q ss_pred cceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~g~~~--------- 74 (321)
.++|+++|+++.|+. +.+.+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 358999999999942 11469999999999999999999999999999999999998 5999999988542
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHHHH--HhC---CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHH
Q psy106 75 -KQLGFMPQQI---SLYPEFTIDEMICYYGL--IYG---MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -~~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++ .+++++|+.||+.+... ... ....+.++++.++++.+++. . .++++.+|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 3599999996 47888999999986431 211 12233445678889999985 3 689999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||||+.+|++|||||||+|||+.+++.++++|.+++++|+|||++|||++++.. |||+++|++|+++..|+++++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999998789999999999999977 999999999999999988765
No 222
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-47 Score=357.37 Aligned_cols=209 Identities=21% Similarity=0.323 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCC------------------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC
Q psy106 9 IRVENAYKRHSS------------------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70 (321)
Q Consensus 9 I~v~nl~k~y~~------------------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~ 70 (321)
++++|++|.|.. ..+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 899999998754 11358999999999999999999999999999999999999999999998
Q ss_pred CcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 71 ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 71 g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|. +++++|++.+++.+|+.||+.+.....+...++..+.++.+++.+++.. .++++.+||+|||||++|||||+.
T Consensus 85 g~----~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~ 160 (264)
T PRK13546 85 GE----VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITV 160 (264)
T ss_pred CE----EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhh
Confidence 75 6788888888888999999987554444444444555667788888865 688899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++|||||||+|||+.+++.+++.+.+++++|+|||++||+++++.. ||++++|++|+++..|+++++..+
T Consensus 161 ~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 161 NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 999999999999999999999999999998779999999999999976 999999999999999999988654
No 223
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-48 Score=353.02 Aligned_cols=207 Identities=28% Similarity=0.360 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++. +.+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 3 l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 7899999999742 3599999999999999999999999999999999999999999999988542 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++. |+.||+.+.... ....+..+. ....++.+ ++.. .++++.+||+||||||+|||||+.+|
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999988875 999999764221 111111111 11222222 2322 45678999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.||++++|++|++++.++.+++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999986 5899999999999987799999999999999998877654
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.2e-47 Score=352.48 Aligned_cols=209 Identities=20% Similarity=0.315 Sum_probs=177.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc----------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK----------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~----------~ 75 (321)
||+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|.+. .
T Consensus 1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 5899999999987 56999999999999999999999999999999999995 69999999998642 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH-H--hC----CCHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL-I--YG----MSLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSLAI 145 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~-~--~~----~~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~iA~ 145 (321)
.++|+||++.+++.++..+++.+... . .. .......++++++++.+++. . .++++. +||||||||++|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 59999999988888887776543211 1 10 11112345567778888884 2 456664 89999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l 218 (321)
||+.+|++|||||||+|||+.+++.+.++|++++++|+|||++|||++++.. ||++++|++|+++..|+++.+
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999998778999999999999975 899999999999999988744
No 225
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=342.60 Aligned_cols=210 Identities=30% Similarity=0.441 Sum_probs=194.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQ 82 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q 82 (321)
+++.+++++.+|++....+|+|+|++|.+||+++++||||||||||+|+++|+.+|+.|+|.++|... ..-|.|||
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 67899999999998545599999999999999999999999999999999999999999999998754 45699999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.++|.+++.||+.|+.++.++++.+..+++.+.+..+++.. .++++.+|||||||||.|||||+.+|++|+||||++
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg 161 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence 9999999999999999999999999888888999999999976 478899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChh
Q psy106 162 GIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPK 216 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~ 216 (321)
+||.-.++.+.+++.++. +.|+.++++|||++|+-. ++|+++|+- |+|++.-+++
T Consensus 162 AlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 162 ALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999986 569999999999999987 999999985 7888876665
No 226
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-47 Score=362.26 Aligned_cols=212 Identities=28% Similarity=0.422 Sum_probs=182.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 457999999999987 569999999999999999999999999999999999986 6899999988532
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHh------------CCC-HHHHHHHHHHHHHHcCCc-----cccCCCC
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIY------------GMS-LQQIKEKAEYLQALLHLN-----HFKRKCG 131 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~------------~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~ 131 (321)
++++|+||++.+++ .|+.||+.+..... +.. ....++.+..+++.+++. ..++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 46999999998887 49999998754321 111 122245567778887763 2478899
Q ss_pred ccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEE-EEEeCCEE
Q psy106 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMI-GLMRKGIL 209 (321)
Q Consensus 132 ~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv-~il~~G~i 209 (321)
+||||||||++|||||+++|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++ ++|++|++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 9999999999999999999999999999999999999999999999876 4899999999999976 9996 57799999
Q ss_pred EEecChhHHHhh
Q psy106 210 LEESPPKVLLEK 221 (321)
Q Consensus 210 ~~~g~~~~l~~~ 221 (321)
++.|+++++.+.
T Consensus 279 ~~~g~~~~~~~~ 290 (305)
T PRK14264 279 VEYDDTDKIFEN 290 (305)
T ss_pred EEeCCHHHHHhC
Confidence 999999887654
No 227
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-48 Score=345.69 Aligned_cols=219 Identities=27% Similarity=0.393 Sum_probs=194.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++..+ +.+|+++||++.+||+.+|+||||||||||||.|+|...|++|++.++|.+. ++-+
T Consensus 1 mi~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 6899999999988 6799999999999999999999999999999999999999999999998763 5679
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc------
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMS--LQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------ 149 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------ 149 (321)
.+||+..+-..+||.|.+.++...++.. ..+..+.++.++...++.. ..+.+.+|||||||||.+||.|++
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 9999998866789999999887666432 2244556778888888865 578899999999999999999987
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLE 228 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~ 228 (321)
++++|+||||||+||+..+..++++.++++++|..|+.+-||++.+.. |||+++|++|++++.|+|+++++. +.++
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~---Etl~ 235 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD---ETLE 235 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH---HHHH
Confidence 456999999999999999999999999999999999999999999865 999999999999999999998764 4566
Q ss_pred HHH
Q psy106 229 DVF 231 (321)
Q Consensus 229 ~~~ 231 (321)
.+|
T Consensus 236 ~vy 238 (259)
T COG4559 236 RVY 238 (259)
T ss_pred HHh
Confidence 655
No 228
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-47 Score=344.09 Aligned_cols=197 Identities=26% Similarity=0.303 Sum_probs=169.5
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
.+...|+++|++++|++....+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 34567999999999985324699999999999999999999999999999999999999999999998642
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+.++|+||++.+++ .|+.||+.+.. .... +.+.+.++ .++++.+||||||||++|||||+.+|+++
T Consensus 82 ~~i~~v~q~~~~~~-~tv~~~l~~~~---~~~~----~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~ll 147 (207)
T cd03369 82 SSLTIIPQDPTLFS-GTIRSNLDPFD---EYSD----EEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVL 147 (207)
T ss_pred hhEEEEecCCcccC-ccHHHHhcccC---CCCH----HHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 56999999998887 49999996532 1111 11222222 35788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecCh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~ 215 (321)
||||||+|||+.++..++++|++++ +|.|+|++||+++++..||++++|++|+++..|++
T Consensus 148 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 148 VLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999985 58999999999999977999999999999887764
No 229
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.1e-48 Score=388.77 Aligned_cols=203 Identities=24% Similarity=0.355 Sum_probs=179.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+. +.+|
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 7999999999987 5699999999999999999999999999999999999999999999877532 3489
Q ss_pred EEcCCCCC--C-C-----CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 79 FMPQQISL--Y-P-----EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 79 ~v~Q~~~l--~-~-----~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|+||++.+ + + .+|+.|++.+. .+.++++.++++.++++. .++++.+|||||||||+||+||+.
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99998653 1 1 46888876532 122356778889999865 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998779999999999999977 99999999999999999888754
No 230
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-48 Score=382.99 Aligned_cols=215 Identities=25% Similarity=0.373 Sum_probs=195.4
Q ss_pred CCCCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 1 ~~~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
|++...+.++++|++|+||+ .++|+++||++.+||++||+|.||||||||+|+|+|.++|++|+|.++|+..
T Consensus 1 ~~~~~~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 1 MTMSTPPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred CCCCccceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHH
Confidence 34555678999999999999 7799999999999999999999999999999999999999999999999753
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYG----MSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~ 145 (321)
..|+.|+|+.++.|++||.||+.+...... ++.+..++++.++++.+++. ..+.++++||.||||.|+|||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 469999999999999999999987544322 45667778888999988874 378899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh-hH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP-KV 217 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~-~~ 217 (321)
||..+++++|||||||+|+....+.+++++++++++|.+||++||.++|+.. |||+.+|++|+.+.+.+. .+
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 9999999999999999999999999999999999999999999999999977 999999999999998873 44
No 231
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-47 Score=350.37 Aligned_cols=207 Identities=25% Similarity=0.364 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|+++ +.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999632 4599999999999999999999999999999999999999999999998642 45999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++ .|+.||+.+... .....+..+. +...++.+ +++. .++++.+||+|||||++|||||+.+|
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998886 699999976432 1122211111 11222222 2222 45678899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+.++..++++|.++++ |+|||++||+++++..||++++|++|+++..|+++++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999876 999999999999997799999999999999999887754
No 232
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-47 Score=344.32 Aligned_cols=192 Identities=22% Similarity=0.261 Sum_probs=171.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEc
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMP 81 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~ 81 (321)
||+++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 7999999999987 5699999999999999999999999999999999999999999999998652 4689999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+....++.. .+.+.++++.+++.. .++++++||||||||++|||||+.+|+++||||||
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9988888999999998765443322 134677888888864 57889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
+|||+.++..++++|++++++|+|||++||+++++.. |+++-++.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 156 AALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999988779999999999999987 88877743
No 233
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-47 Score=428.17 Aligned_cols=215 Identities=33% Similarity=0.509 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLG 78 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig 78 (321)
+.|+++||+|.|+++.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 47999999999963225799999999999999999999999999999999999999999999998653 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+++.+||+||+.++++.++.+.++.+++++++++.++++. .++++++|||||||||+||+||+.+|+++|||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999887777665556677888999999975 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||+||||.+++.++++|++++ +|+|||++||++++++. |||+++|++|++++.|+++.+++++
T Consensus 1087 EPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1087 EPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999999999985 59999999999999987 9999999999999999999997654
No 234
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=9.8e-48 Score=354.69 Aligned_cols=204 Identities=22% Similarity=0.356 Sum_probs=177.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
++++||++. . +|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|.+. +.+||
T Consensus 1 ~~~~~l~~~--~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS--T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh--c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 357888885 1 7999999999999999999999999999999999986 499999998642 35899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc-------CC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH-------DP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~-------~P 151 (321)
+||++.+++.+|+.+|+.+.... .....+..++++++++.+++.. .++++.+||+|||||++|||||+. +|
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 99999888889999999875321 2222334456778888899865 688999999999999999999998 67
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+.++..+.++|++++++|+|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999999998779999999999999876 99999999999999999887753
No 235
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-48 Score=388.89 Aligned_cols=206 Identities=27% Similarity=0.453 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.++|+++|+++.|+ .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++. +
T Consensus 263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 45899999999763 289999999999999999999999999999999999999999999988532 4
Q ss_pred eEEEEcCC---CCCCCCCCHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHH
Q psy106 76 QLGFMPQQ---ISLYPEFTIDEMICYYGLIY--------GM-SLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 76 ~ig~v~Q~---~~l~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv 141 (321)
++||+||+ +.+++++|+.||+.+....+ +. .....++.+.++++.+++. . .++++++|||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 69999998 46889999999997643210 11 1223335567888999995 4 6899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. |||+++|++|+++..++.
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999999999998779999999999999976 999999999999988765
No 236
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.3e-47 Score=343.06 Aligned_cols=188 Identities=24% Similarity=0.273 Sum_probs=168.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEe
Confidence 578999999987 6699999999999999999999999999999999999999999999988652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+..... ..++++++++.+++.. .++++.+||||||||++|||||+.+|+++|||||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 152 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999998999999998753211 2345677888888865 5788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLM 204 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il 204 (321)
|+|||+.+++.+++.|++++++|.|+|++||+..+... |++++.+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999988779999999999888755 9999876
No 237
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-47 Score=347.01 Aligned_cols=197 Identities=25% Similarity=0.338 Sum_probs=167.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 789999999975334699999999999999999999999999999999999999999999988642 56999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+||++.+++ .|+.||+.+... ... +.+.+.++.+++.. .++++.+||+|||||++|||||
T Consensus 83 ~~q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred ECCCCcccc-chHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 999998776 599999864321 122 22223333333321 2468899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
+.+|+++||||||+|||+.+++.++++|+++++ +.|||++||+++++..||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999999999864 689999999999997799999999999998775
No 238
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-49 Score=347.86 Aligned_cols=220 Identities=27% Similarity=0.431 Sum_probs=199.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++|+|++ +.+++++|++|++|.+++|+|||||||||||.+++.|+++++|+|+++|.+. ++++
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 6899999999999 7799999999999999999999999999999999999999999999998764 5789
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
.+-|+..+-..+||+|.+.|+...| |....+.+..+.++++.+++.. .+++..+||||||||..||+.++++.++++
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEE
Confidence 9999999988999999998865444 4445667788899999999976 589999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHHH
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~~ 232 (321)
||||.++||.....++++.++++++ -|+||+++-||++++.. +|+|+.|++|+++..|+|+++.+. +.+.+.|.
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~---~~L~eiyd 234 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP---EILSEIYD 234 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH---HHHHHHhc
Confidence 9999999999999999999999985 59999999999999976 999999999999999999999754 45555553
No 239
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-47 Score=386.54 Aligned_cols=212 Identities=22% Similarity=0.300 Sum_probs=182.5
Q ss_pred cceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~--------- 74 (321)
.++|+++|++++|++ +...+|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|++.
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 358999999999932 114599999999999999999999999999999999999985 899999988532
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHHHH--Hh---CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHH
Q psy106 75 -KQLGFMPQQI---SLYPEFTIDEMICYYGL--IY---GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -~~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~~---~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++ .+++++|+.+|+.+... .. .......++++.++++.+++. . .++++.+|||||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 4699999996 58899999999976431 11 122233345677889999985 3 588999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. |||+++|++|+++...+.++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999998789999999999999976 99999999999998776543
No 240
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-47 Score=340.96 Aligned_cols=188 Identities=26% Similarity=0.319 Sum_probs=167.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||+++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 5899999999987 5699999999999999999999999999999999999999999999998642 47999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++.+|+.||+.+..... .. ...+.++++.+++.. .++++.+||+|||||++||||++.+|+++||||
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999988999999998754221 11 235677888888864 578889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
||+|||+.++..+++.|++++++|.|||++||+.+.+..||.-.
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999998777999999999999998898644
No 241
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-47 Score=333.53 Aligned_cols=164 Identities=42% Similarity=0.730 Sum_probs=153.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
++++|++++|++ ..+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEE
Confidence 478999999987 5699999999999999999999999999999999999999999999988642 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
||++.+++.+|+.||+. ||+|||||++|||||+.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 79 PEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred ecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999873 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
+|||+.++..+.++|++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999998779999999999999976 999999999864
No 242
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.9e-47 Score=334.44 Aligned_cols=164 Identities=29% Similarity=0.471 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++....+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 578999999975334599999999999999999999999999999999999999999999998542 56999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+||++.+++. |+.||+ ||||||||++|||||+.+|+++|||||
T Consensus 81 ~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 81 LPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred ECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999988874 999987 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
|+|||+.++..+++.|++++++|+|||++||++++++.||++++|++|++
T Consensus 124 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 124 NSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999998779999999999999866999999999974
No 243
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-47 Score=378.01 Aligned_cols=214 Identities=21% Similarity=0.350 Sum_probs=187.0
Q ss_pred CCcceEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcC
Q psy106 4 KDKCAIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
.+.+|++++|++++|+++. +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++++
T Consensus 17 ~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~----~~i~~ 92 (549)
T PRK13545 17 YNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA----ALIAI 92 (549)
T ss_pred cccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe----eeEEe
Confidence 3457899999999987642 359999999999999999999999999999999999999999999999864 23334
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
.+.+++.+|+.||+.+.....+....+..+++..+++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 93 ~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTs 172 (549)
T PRK13545 93 SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172 (549)
T ss_pred ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 5567778999999987654445445555566778889999865 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++|++++.|+++++...
T Consensus 173 gLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 173 VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999988779999999999999977 999999999999999999988654
No 244
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1e-47 Score=348.71 Aligned_cols=200 Identities=25% Similarity=0.405 Sum_probs=170.0
Q ss_pred cceEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 6 KCAIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
.++|+++|++++|++.. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 47899999999997521 3599999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK-----EKAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++|+||++.+++ .|+.||+.+.... ....+.. ..+..+++.+ ++.. .++++.+|||||||||+|||||
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 6999999998876 5999999764321 1111111 1234566666 5654 5788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++..||++++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999865 6899999999999977999999999874
No 245
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.6e-47 Score=334.73 Aligned_cols=170 Identities=26% Similarity=0.448 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 578999999986323699999999999999999999999999999999999999999999998642 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
||++.+++ .|++||+ +.+||+|||||++|||||+.+|+++||||||
T Consensus 81 ~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 81 NQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred ccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99998876 6999886 6789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
+|||+.+++.+++.|++++ ++.|||++||++++++.||++++|++|++++.|
T Consensus 127 ~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 127 VGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999985 589999999999999779999999999998654
No 246
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.1e-47 Score=337.36 Aligned_cols=178 Identities=30% Similarity=0.482 Sum_probs=160.5
Q ss_pred eEEEEeEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc------C
Q psy106 8 AIRVENAYKRHSSK----LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~----~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~------~ 75 (321)
.|+++|++++|++. .+.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.+. +
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48999999999752 146999999999999999999999999999999999999 99999999998753 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+++|+||++.+++.+|+.||+.+..... +||+|||||++|||||+.+|+++|
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------------------------~LS~G~~qrv~laral~~~p~ill 134 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKLR----------------------------GLSGGERKRVSIALELVSNPSLLF 134 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHhc----------------------------cCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6999999999999999999987532110 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh-HHhh-cCEEEEEeCCEEEEec
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID-EAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~-~~~~-~drv~il~~G~i~~~g 213 (321)
|||||+|||+.+++.+.++|++++++|+|+|++||+++ ++.. ||++++|++|++.+.|
T Consensus 135 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 135 LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999998877999999999997 5655 9999999999997653
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-47 Score=339.59 Aligned_cols=184 Identities=20% Similarity=0.261 Sum_probs=161.2
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~-------- 74 (321)
.+.++|++|.|+++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999743 3679999999999999999999999999999999999999 8999999988642
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++++|+||++.+++.+|+.||+.+..... .++++.+||+|||||++|||||+.+|+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~ll 140 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASVL 140 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 46999999999999999999997643210 45678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEE-ecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILI-TTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil-~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||||+|||+.+++.++++|++++++ +.|+|+ ++|+.+++.. ||++++|++|+++..|
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999754 666555 4566788865 9999999999998654
No 248
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.5e-47 Score=335.29 Aligned_cols=167 Identities=29% Similarity=0.454 Sum_probs=154.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 4689999999998 79999999999999999999999999999999999999999999988542 4
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+++|+||++ .+++.+|+.||+.+... ||+|||||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~ 124 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPR 124 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCC
Confidence 699999995 57888999999876421 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
++||||||+|||+.+++.+++++++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 125 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999997778999999999999977 999999999974
No 249
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-47 Score=334.14 Aligned_cols=165 Identities=38% Similarity=0.635 Sum_probs=153.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------CeE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQL 77 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~i 77 (321)
|+++|++++|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999987 5699999999999999999999999999999999999999999999988531 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+|+||++.+++.+|+.||+.+. ||+|||||++|||||+.+|+++|||
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilD 125 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLD 125 (178)
T ss_pred EEEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 9999999999889999987642 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
|||+|||+.++..++++|++++++ |.|+|++||+++++.. ||++++|++|+
T Consensus 126 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999876 8999999999999986 99999999884
No 250
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-47 Score=327.64 Aligned_cols=209 Identities=29% Similarity=0.449 Sum_probs=193.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------- 73 (321)
.|+++|+++.||. ..+|.||+|+-++||.+.++||+|||||||+|.+.=+.-|.+|+..+.+..
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 4899999999999 679999999999999999999999999999999999999999999986532
Q ss_pred -cCeEEEEcCCCCCCCCCCHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 74 -KKQLGFMPQQISLYPEFTIDEMICY-YGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 74 -~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++++|+|||...++|.+||.||+.- +.+..++++++.+.++.++++.+.+.. .|+.+-.|||||+|||+|||||+++
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence 1579999999999999999999864 456678888888899999999999876 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|++|++||||++|||+-..++.++|+++...|.|-+++||..+.++. |.||+.|++|+|++.|+.+-+
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999999999999987 999999999999999997654
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-46 Score=335.26 Aligned_cols=178 Identities=30% Similarity=0.424 Sum_probs=159.5
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc-----CeEE
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK-----KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~-----~~ig 78 (321)
+|+++|+++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|++. ++++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 58999999999741 145999999999999999999999999999999999986 48999999998652 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|+||++.+++.+|++||+.+.... + +||||||||++|||||+.+|+++||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~----------------~------------~LSgGe~qrv~la~al~~~p~vlllDE 134 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALL----------------R------------GLSVEQRKRLTIGVELAAKPSILFLDE 134 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHH----------------h------------cCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence 999999999999999999864210 0 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH-Hhh-cCEEEEEeC-CEEEEec
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-AKK-SHMIGLMRK-GILLEES 213 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~-~~~-~drv~il~~-G~i~~~g 213 (321)
||+|||+.++..+++.+++++++|+|||++||++++ +.. ||++++|++ |++++.|
T Consensus 135 P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 135 PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999988779999999999984 554 999999999 9998764
No 252
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.5e-47 Score=355.52 Aligned_cols=203 Identities=23% Similarity=0.356 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++....+|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.+. ++++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 78999999995322569999999999999999999999999999999999997 799999998652 47999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCc-----------cChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGS-----------LSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~-----------LSgGqkQRv~iA~aL 147 (321)
+||++.+|+. |+++|+..+. .... +.+.++++.+++.. .++.+.. ||+|||||++|||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~---~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYG---KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred ECCCcccchh-hHHHHhhhcc---CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999975 9999996432 1122 33455667778754 4666655 999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+.+|+++||||||++||+.++..+.+.|+++. +++|||++||+++++..|||+++|++|++++.|+++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC
Confidence 99999999999999999999999999999874 58999999999999877999999999999999999998763
No 253
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.4e-47 Score=336.96 Aligned_cols=187 Identities=25% Similarity=0.287 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|+
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEe
Confidence 578999999987 6799999999999999999999999999999999999999999999998652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+.....+. + ++.+.++++.+++.. .++++.+||||||||++||||++.+|++++||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~---~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGG---A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCC---c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999888889999999876544331 1 235667888888865 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
|+|||+.++..++++|.+++++|.|||++||+...+ .|++++
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence 999999999999999999877799999999998543 256654
No 254
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-46 Score=384.29 Aligned_cols=208 Identities=24% Similarity=0.281 Sum_probs=180.6
Q ss_pred cceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~ 84 (321)
++||+++|++++|+ + +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .++||+||++
T Consensus 4 ~~~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~ 79 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEP 79 (556)
T ss_pred cEEEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCC
Confidence 56899999999998 6 66999999999999999999999999999999999999999999998753 5799999999
Q ss_pred CCCCCCCHHHHHHHHHHH-h-------------CCCH----------------------HHHHHHHHHHHHHcCCccccC
Q psy106 85 SLYPEFTIDEMICYYGLI-Y-------------GMSL----------------------QQIKEKAEYLQALLHLNHFKR 128 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~-~-------------~~~~----------------------~~~~~~~~~ll~~~~l~~~~~ 128 (321)
.+++.+|+.||+.+.... + .... .+..+++..+++.+++...++
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 159 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccC
Confidence 999999999999864211 0 1110 011345667788888865688
Q ss_pred CCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
++++|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||++|||++++.. ||++++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 999999999999999999999999999999999999999999999998763 599999999999987 9999999999
Q ss_pred EEE-EecChhHHHh
Q psy106 208 ILL-EESPPKVLLE 220 (321)
Q Consensus 208 ~i~-~~g~~~~l~~ 220 (321)
+++ +.|+.+++.+
T Consensus 237 ~i~~~~g~~~~~~~ 250 (556)
T PRK11819 237 RGIPWEGNYSSWLE 250 (556)
T ss_pred EEEEecCCHHHHHH
Confidence 986 7888887654
No 255
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-46 Score=349.30 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=174.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.+|+++|++++|++..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +.+
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 56999999999986334699999999999999999999999999999999999999999999988642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-----KAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+|+||++.+++ .|+.||+..... .......+ .+...++.+ +++. .++++.+||+|||||++|||||+.
T Consensus 98 ~~v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 98 SIILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred EEECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998887 499999853211 11111111 112233333 3432 456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|+++||||||+|||+.++..+++++.+++ ++.|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 999999999999999999999999998875 48999999999999977999999999999999999887643
No 256
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-46 Score=379.85 Aligned_cols=206 Identities=21% Similarity=0.305 Sum_probs=178.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
||+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. .++||+||++.++
T Consensus 1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~ 76 (530)
T PRK15064 1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAF 76 (530)
T ss_pred CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcC
Confidence 5899999999987 67999999999999999999999999999999999999999999999874 4699999999999
Q ss_pred CCCCHHHHHHHHHH-H----------hCCC---------------------HHHHHHHHHHHHHHcCCcc-c-cCCCCcc
Q psy106 88 PEFTIDEMICYYGL-I----------YGMS---------------------LQQIKEKAEYLQALLHLNH-F-KRKCGSL 133 (321)
Q Consensus 88 ~~ltv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~ll~~~~l~~-~-~~~~~~L 133 (321)
+.+|+.||+.+... . ...+ ..+.++++..+++.+++.. . ++++.+|
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 99999999976421 0 0000 0112345677888899864 3 5788999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE-EE
Q psy106 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL-LE 211 (321)
Q Consensus 134 SgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i-~~ 211 (321)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|.+ .|.|||++|||++++.. ||++++|++|++ ++
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~ 233 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999863 58999999999999976 999999999999 47
Q ss_pred ecChhHHHh
Q psy106 212 ESPPKVLLE 220 (321)
Q Consensus 212 ~g~~~~l~~ 220 (321)
.|+++++..
T Consensus 234 ~g~~~~~~~ 242 (530)
T PRK15064 234 PGNYDEYMT 242 (530)
T ss_pred cCCHHHHHH
Confidence 899887754
No 257
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2e-46 Score=335.39 Aligned_cols=176 Identities=24% Similarity=0.378 Sum_probs=159.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc----------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~----------~~ 76 (321)
++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999987 5699999999999999999999999999999999999 479999999988642 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
++|+||++.+++.+++.+++ ++...+||||||||++|||||+.+|+++||
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illl 128 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAIL 128 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999888887765 122358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh--hcCEEEEEeCCEEEEecChh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK--KSHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~--~~drv~il~~G~i~~~g~~~ 216 (321)
||||+|||+.++..++++|++++++|+|||++||++++++ .||++++|++|++++.|+.+
T Consensus 129 DEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 9999999999999999999999877899999999999997 59999999999999998544
No 258
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.4e-47 Score=334.01 Aligned_cols=172 Identities=30% Similarity=0.484 Sum_probs=151.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------CeEEEEcCCCC--CCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQLGFMPQQIS--LYPE 89 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ig~v~Q~~~--l~~~ 89 (321)
+.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+||++. ++ .
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-A 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-c
Confidence 5699999999999999999999999999999999999999999999988542 35999999973 44 4
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
.|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 799999987654444444445566778888889865 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 169 EEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 169 ~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+.++++|++++++|+|||++||+++++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999987799999999998763
No 259
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-46 Score=336.29 Aligned_cols=192 Identities=24% Similarity=0.357 Sum_probs=158.4
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 9 IRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 9 I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
|+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +|+|+||++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~ 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPW 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCch
Confidence 57899999998632 2599999999999999999999999999999999999999999999998 6999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+++ .|+.||+.+.... ......+..+ ..+... +++ ..++++.+||+|||||++|||||+.+|+++|||
T Consensus 77 l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 77 IQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred hcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 884 6999999874321 1111111111 111111 122 135678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 158 EPTSGIDPVIAEEIWN-HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~-ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
|||+|||+.+++.+++ +++++.++|.|||++||+++++..||++++|++|+
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998 56666666899999999999997799999999985
No 260
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=378.77 Aligned_cols=206 Identities=23% Similarity=0.379 Sum_probs=180.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.++|+++|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 255 ~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 255 EVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred CcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 35799999984 269999999999999999999999999999999999999999999988542 3
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHH--Hh---C-CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHH
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICYYGL--IY---G-MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~~---~-~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA 144 (321)
++||+||++ .+++.+|+.||+.+... .. + ....+.+++++++++.+++. . .++++.+|||||||||+||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 599999996 57888999999986431 11 1 12233345677889999984 3 7899999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 408 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 408 RGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999998779999999999999977 999999999999999988765
No 261
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=376.97 Aligned_cols=206 Identities=23% Similarity=0.348 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+.++++|++. ..+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|++. ++
T Consensus 256 ~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 256 VRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred cEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4688999973 2389999999999999999999999999999999999999999999988542 46
Q ss_pred EEEEcCCC---CCCCCCCHHHHHHHHHHHh----C--CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHH
Q psy106 77 LGFMPQQI---SLYPEFTIDEMICYYGLIY----G--MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 77 ig~v~Q~~---~l~~~ltv~e~l~~~~~~~----~--~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++|+||++ .+++.+|+.||+.+..... + ......++.+.++++.+++. . .++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999996 4888899999997643211 1 12222335677888999983 3 68999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||+.+|++|||||||+|||+.++++++++|.+++++|.|||++|||++++.. ||++++|++|++++.|+++++
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999998889999999999999977 999999999999999988764
No 262
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7e-46 Score=377.98 Aligned_cols=208 Identities=24% Similarity=0.285 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~ 84 (321)
+.||+++|++++|+ + +.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.+++. .+|||+||++
T Consensus 2 ~~~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~ 77 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEP 77 (552)
T ss_pred cEEEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccC
Confidence 45899999999998 5 56999999999999999999999999999999999999999999998753 5799999999
Q ss_pred CCCCCCCHHHHHHHHHHH-h-------------CCCHHH----------------------HHHHHHHHHHHcCCccccC
Q psy106 85 SLYPEFTIDEMICYYGLI-Y-------------GMSLQQ----------------------IKEKAEYLQALLHLNHFKR 128 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~-~-------------~~~~~~----------------------~~~~~~~ll~~~~l~~~~~ 128 (321)
.+++++|+.||+.+.... . .....+ ..+++.++++.++++..++
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 157 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccC
Confidence 999999999999864221 0 111010 1234556677777755678
Q ss_pred CCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 89999999999999999999999999999999999999999999999876 3599999999999987 9999999999
Q ss_pred EEE-EecChhHHHh
Q psy106 208 ILL-EESPPKVLLE 220 (321)
Q Consensus 208 ~i~-~~g~~~~l~~ 220 (321)
+++ +.|+.+++.+
T Consensus 235 ~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 235 RGIPWEGNYSSWLE 248 (552)
T ss_pred EEEEecCCHHHHHH
Confidence 976 7788887654
No 263
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.4e-46 Score=387.95 Aligned_cols=203 Identities=25% Similarity=0.377 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.++|.+. ++||
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5999999999964336799999999999999999999999999999999999999999999999764 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||++.+|+. |++||+.++.. .+.++ +.++++..++++ .......||||||||++||||
T Consensus 531 ~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 531 VVLQNGRLMSG-SIFENIAGGAP---LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602 (686)
T ss_pred EEccCCccCcc-cHHHHHhcCCC---CCHHH----HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999976 99999987522 23332 333444444321 123346799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+.+.+++.+.|+++ ++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999775 5899999999999988999999999999999999998753
No 264
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.6e-46 Score=364.70 Aligned_cols=207 Identities=28% Similarity=0.390 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+.+++++++|+|++ ..+++||||+|++||+.||+|.||||||||+++|.|+++|++|+|.++|+.. .
T Consensus 2 ~~~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 2 EPALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred CceEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 356999999999998 7899999999999999999999999999999999999999999999999763 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
.||+|+|++.+++++||.||+.++... ...+..+.+++++++.+.++++. .++++.+||-||||||.|.+||.++|
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 699999999999999999999987532 12456677888999999999974 78999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
++|||||||+-|-|...+++++.+++++++|+|||++||-++|+.. |||+-+|++|+++...+
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999987 99999999999876655
No 265
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.6e-46 Score=329.23 Aligned_cols=167 Identities=33% Similarity=0.522 Sum_probs=148.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC---------eEEEE
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK---------QLGFM 80 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~---------~ig~v 80 (321)
+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.. .++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999987 56999999999999999999999999999999999999999999999886431 23333
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
|| +++.+++.. .++++.+||+|||||++|||||+.+|+++|||||
T Consensus 79 ~q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 79 PQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred HH----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33 556667754 5778999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEe
Q psy106 160 TSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~ 212 (321)
|+|||+.++..+.+.|.+++++ |.|+|++||+++++.. ||++++|++|+++..
T Consensus 125 ~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999765 8999999999999966 999999999998764
No 266
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.3e-46 Score=329.70 Aligned_cols=186 Identities=25% Similarity=0.368 Sum_probs=163.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEcC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMPQ 82 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~Q 82 (321)
||+++|++++|++ +.+++ +||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|++|
T Consensus 1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 5899999999976 44554 9999999999999999999999999999999999999999998653 45899999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.+++.+|+.||+.+....++ ..+.+..+++.+++.. .++++.+||+|||||++||||++.+|+++||||||+
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9888888999999987654332 1245566778888864 688899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
|||+.++..+++++++..++|.|+|++||++++++.||.+
T Consensus 153 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999987767799999999999999888765
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.8e-46 Score=375.31 Aligned_cols=207 Identities=22% Similarity=0.370 Sum_probs=179.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|+++ . +|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 266 ~~~l~~~~l~~---~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 266 APVLTVEDLTG---E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CceEEEeCCCC---C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 35899999983 1 59999999999999999999999999999999999999999999988642 3
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHH--H-hCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICYYGL--I-YGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~-~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++|+||++ .+++.+|+.+|+..... . ........++.++++++.+++. . .++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 699999985 58888999999864211 1 1111222345577888999985 3 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. |||+++|++|+++..++++++.
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999998789999999999999977 9999999999999999887664
No 268
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-46 Score=375.55 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=177.7
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC-
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS- 85 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~- 85 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++. +++||+||++.
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~ 393 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAY 393 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccc
Confidence 58999999999987 56999999999999999999999999999999999999999999999874 57999999974
Q ss_pred -CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 86 -LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 86 -l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+++.+|+.+|+.+.. ... ..++++..+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 394 ~~~~~~t~~~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 394 DFENDLTLFDWMSQWR---QEG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred cCCCCCcHHHHHHHhc---cCC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 667799999986421 111 1234567788888884 36899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHHh
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLLE 220 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~~ 220 (321)
||+.++..+++.|+++ +.|||++|||++++.. |||+++|++|+++ ..|+++++.+
T Consensus 469 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 469 MDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred CCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999876 3599999999999977 9999999999998 7888887654
No 269
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-45 Score=378.19 Aligned_cols=208 Identities=25% Similarity=0.324 Sum_probs=173.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|+++.|.++ +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.+. ++|+
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 49999999765432 56999999999999999999999999999999999999 9999999999753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
||||++.+|+. |++||+.++. ...++++..+.++ +.++.+ |++. .......||||||||++|||||+++
T Consensus 427 ~v~Q~~~LF~~-TI~eNI~~g~--~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 427 WVGQNPQLPHG-TLRDNVLLGN--PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred EecCCCcCCCc-CHHHHhhcCC--CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999976 9999998752 1233333333222 112222 2221 2344567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 99999999999999999999999998875 58999999999999988999999999999999999998754
No 270
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.1e-46 Score=384.50 Aligned_cols=209 Identities=29% Similarity=0.405 Sum_probs=184.2
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--ccEEEECCccc-----CeEEEEcC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--GGNIHLSITSK-----KQLGFMPQ 82 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~--~G~I~~~g~~~-----~~ig~v~Q 82 (321)
..+|++++|++ +.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|++. +++||++|
T Consensus 70 ~~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q 147 (659)
T PLN03211 70 KISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQ 147 (659)
T ss_pred ccccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECc
Confidence 45677888877 66999999999999999999999999999999999999885 89999999753 57999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHcCCcc-c-----cCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 83 QISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNH-F-----KRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~-~-----~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++.+++.+||+||+.+.+... ..+.++.+++++++++.+++.+ . ++.+++||||||||++||+||+.+|++
T Consensus 148 ~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 148 DDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 999999999999999876443 1234445566788899999864 2 345788999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh-HHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID-EAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~-~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.. ||++++|++|++++.|+++++..
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999999999878999999999998 4655 99999999999999999998865
No 271
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-46 Score=324.41 Aligned_cols=162 Identities=32% Similarity=0.493 Sum_probs=149.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|+++...+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 478999999987322699999999999999999999999999999999999999999999998642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+||++.+++ .|+.||+ ||+|||||++|||||+.+|+++|||||
T Consensus 81 ~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP 123 (171)
T cd03228 81 VPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEA 123 (171)
T ss_pred EcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998876 5998886 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
|+|||+.++..++++++++++ ++|||++||++++++.||++++|++|+
T Consensus 124 ~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 124 TSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999864 799999999999996699999999884
No 272
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-45 Score=335.84 Aligned_cols=189 Identities=28% Similarity=0.408 Sum_probs=163.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCCCCCCC--CCCHHHHHHHHHHH--
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQISLYP--EFTIDEMICYYGLI-- 102 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~~~l~~--~ltv~e~l~~~~~~-- 102 (321)
|+|++||++||+||||||||||+++|+|+.+|++|+|.++|++. ++++|+||++.+++ .+|+.||+.+....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999999753 57999999987643 47999999764221
Q ss_pred --hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy106 103 --YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179 (321)
Q Consensus 103 --~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~ 179 (321)
.........+++..+++.+++.. .++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11111223455778889999865 678899999999999999999999999999999999999999999999999998
Q ss_pred hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 180 ~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|+|+|++||+++++.. ||+++++ +|++++.|+++++.+
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 779999999999999976 9999999 899999999988754
No 273
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-45 Score=374.12 Aligned_cols=210 Identities=27% Similarity=0.396 Sum_probs=177.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.++++|++++|+++.+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 5999999999975435699999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.+... ..+.++..+. .++.++.+ +++. .+....+||||||||++|||||+++
T Consensus 396 ~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 396 YLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred EecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999985421 1233332222 12333333 3332 3556788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++||||||++||+.+++++.+.+.++.++|+|+|++||+++.++.||++++|++|++++.|+.+++.+
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999998767899999999999887799999999999999999988754
No 274
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.4e-46 Score=380.11 Aligned_cols=207 Identities=28% Similarity=0.355 Sum_probs=175.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 5999999999976445699999999999999999999999999999999999999999999999763 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ...++++. .++++..++ +. ......+||||||||++||||
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i----~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYART-EQYSREQI----EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCC-CCCCHHHH----HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 11233332 233333332 11 223346799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+...+.+.|.++. +++|+|++||+++.++.||+|++|++|++++.|+.+++.+.
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998874 47999999999999888999999999999999999998754
No 275
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.7e-46 Score=386.90 Aligned_cols=210 Identities=30% Similarity=0.443 Sum_probs=178.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.+. ++||
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 4999999999998655799999999999999999999999999999999999999999999999874 7899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
||+|++.+|.. |++||+.+... ..+.++..+.+. +....+ |.+. .......||||||||++|||||+++
T Consensus 551 ~V~Q~~~Lf~g-SI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 551 YVLQDPFLFSG-SIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EEcccchhhcC-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999998875 99999987532 122233222211 111111 1111 2345567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.+.+.+.+.|.++. +|+|+|++||.+..++.||||++|++|+|+++|+.+++.+.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999875 57999999999999999999999999999999999999764
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-46 Score=372.11 Aligned_cols=207 Identities=23% Similarity=0.364 Sum_probs=176.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.++|+++|+++.| +.+|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 4589999999974 3489999999999999999999999999999999999999999999988543 2
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHH-----HHHHhCC-CHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHH
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICY-----YGLIYGM-SLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~-----~~~~~~~-~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA 144 (321)
.+||+||++ .+|+++|+.+|..+ ....++. .....++.+..+++.+++. . .++++.+|||||||||+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 389999985 47888888877422 1111121 2233345667788888884 3 6899999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+.+|++|||||||+|||+.+++.++++|.+++++|.|||++|||++++.. |||+++|++|+++..++.+
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999998889999999999999976 9999999999999877654
No 277
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.5e-45 Score=385.11 Aligned_cols=204 Identities=23% Similarity=0.356 Sum_probs=174.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 5999999999986446799999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||++.+|+. |++||+.++.. ..+.++.. ++++..++ +. .......||||||||++||||
T Consensus 557 ~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~~i~----~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 557 MVDQDIFLFEG-TVRDNLTLWDP--TIPDADLV----RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred EEecCChhhhc-cHHHHhhCCCC--CCCHHHHH----HHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 12333322 23333222 21 234456799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+.+++.+.|++ .++|+|++||+++.+..||||++|++|++++.|+.+++.+.
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999875 48999999999999988999999999999999999998753
No 278
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-45 Score=352.84 Aligned_cols=182 Identities=34% Similarity=0.518 Sum_probs=164.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 41 llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
|+||||||||||+|+|+|+++|++|+|.++|++. +++||+||++.+|+.+|+.||+.+....++.+..+.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 5899999999999999999999999999998653 469999999999999999999998765555444555567
Q ss_pred HHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCC
Q psy106 114 AEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHY 191 (321)
Q Consensus 114 ~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~ 191 (321)
++++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.|+++++ .|+|+|++|||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 788899999975 6889999999999999999999999999999999999999999999999999875 49999999999
Q ss_pred hhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 192 IDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 192 l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
++++.. |||+++|++|+++..|+++++.+..
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999976 9999999999999999999987654
No 279
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=378.24 Aligned_cols=213 Identities=24% Similarity=0.371 Sum_probs=191.5
Q ss_pred ceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 7 CAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+||+++|++++|+++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|++.++|.+.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 589999999999642 14599999999999999999999999999999999999999999999998652
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||+|||||++|||||+.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 369999999999999999999987654444444455567788889999875 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+++||||||+|||+.+++.+.+++++++++|+|++++||+++.++.|||+++|++|++++.|++++..
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999987799999999999988779999999999999999998764
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.2e-45 Score=319.92 Aligned_cols=163 Identities=28% Similarity=0.364 Sum_probs=148.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ++++|+||++.++
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~~- 76 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLP- 76 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCccc-
Confidence 4789999999642 46999999999999999999999999999999999999999999999875 6799999998765
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
.+|+.||+.+. ++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 77 ~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~ 127 (166)
T cd03223 77 LGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127 (166)
T ss_pred cccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHH
Confidence 57999998642 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 169 EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 169 ~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
+.+.++++++ +.|+|++||+++....||++++|+++
T Consensus 128 ~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 128 DRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999876 58999999999876669999999875
No 281
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.6e-45 Score=318.48 Aligned_cols=151 Identities=26% Similarity=0.480 Sum_probs=139.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999987 5699999999999999999999999999999999999999999999987542 2355
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|+|| ||+|||||++|||||+.+|+++||||
T Consensus 79 ~~~q--------------------------------------------------LS~G~~qrl~laral~~~p~illlDE 108 (163)
T cd03216 79 MVYQ--------------------------------------------------LSVGERQMVEIARALARNARLLILDE 108 (163)
T ss_pred EEEe--------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 5555 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
||+|||+.+++.+++.|++++++|.|||++||+++++.. ||++++|++|++++
T Consensus 109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999998779999999999999876 99999999999875
No 282
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-45 Score=377.63 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=178.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 5999999999976434699999999999999999999999999999999999999999999999763 5699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-cc----------CCCCccChHHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK----------RKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~----------~~~~~LSgGqkQRv~iA~aL 147 (321)
|+||++.+|+. |++||+.+... ..+. +.+.++++..++++ .+ .....||||||||++|||||
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal 490 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAAP--NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCCC--ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999875 99999987531 1222 33445555555532 11 24567999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++|+++|||||||+||+.+++.+.+.+.++. +++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 99999999999999999999999999998875 58999999999999988999999999999999999988754
No 283
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.1e-45 Score=374.62 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=176.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 340 ~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 49999999999753 4699999999999999999999999999999999999999999999999753 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----------c-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----------H-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++. ..++++ +.++++..++. . .......||||||||++||||
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~----i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGR---DISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred EEccCCccccc-hHHHHHHhCC---CCCHHH----HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999987 9999998753 223333 33344444332 1 223456799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988754 6999999999999988999999999999999999998754
No 284
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-45 Score=330.71 Aligned_cols=190 Identities=24% Similarity=0.410 Sum_probs=158.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------Ce
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQ 76 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ 76 (321)
.+.|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999854 5699999999999999999999999999999999999999999999987531 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc------------cccCCCCccChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN------------HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~------------~~~~~~~~LSgGqkQRv~iA 144 (321)
++|+||++.++ +.|+.||+.+... ....+ ....++.+++. ..++++.+||||||||++||
T Consensus 81 i~~~~q~~~~~-~~t~~~nl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 81 VAYAAQKPWLL-NATVEENITFGSP---FNKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEEcCCCccc-cccHHHHHhhcCc---CCHHH----HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999999887 5799999976431 11111 11222333321 13467899999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWN--HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~--ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
|||+.+|+++||||||+|||+.++..+++ +++.++++|.|+|++||+++++..||++++|++|.
T Consensus 153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999999999998 66666667899999999999987799999999874
No 285
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-45 Score=364.92 Aligned_cols=209 Identities=31% Similarity=0.414 Sum_probs=176.3
Q ss_pred eEEE--EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 8 AIRV--ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 8 ~I~v--~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
-+++ +|+++.|++++ ++++|+||++++|+.++|+||||||||||+++|+|+.+|++|+|.+||.+. ++
T Consensus 318 ~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 318 PIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred CceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 3555 49999999874 799999999999999999999999999999999999999999999998763 68
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHcCCc-cccCCC----CccChHHHHHHHHHHHHhc
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQALLHLN-HFKRKC----GSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~~~l~-~~~~~~----~~LSgGqkQRv~iA~aL~~ 149 (321)
++||+|+|.+|+. |++||+.++.. ..++++..+.++. +.+...-+ .+|..+ ..|||||+|||++||||++
T Consensus 397 i~~v~Q~p~lf~g-TireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 397 ISWVSQNPYLFAG-TIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred eeeeCCCCccccc-cHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999986 99999987532 1233333333221 22222211 134334 4599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++++|+||||++||.++.+.+.+.|.++++ ++|++++||++..+..||+|++|++|++++.|.++++.++
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999999999976 4999999999999999999999999999999999998654
No 286
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2e-45 Score=383.51 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=176.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 5999999999975445699999999999999999999999999999999999999999999999753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||++.+|+. |++||+.+... ..+.++.. ++++..++ +. .......||||||||++||||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~----~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP--YADDEEIL----RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC--CCCHHHHH----HHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 12333322 22333222 11 234456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+.+++.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998875 47999999999999988999999999999999999998654
No 287
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-45 Score=337.28 Aligned_cols=192 Identities=27% Similarity=0.376 Sum_probs=172.2
Q ss_pred cceEEEEeEEEEeCCCC-------CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEE
Q psy106 6 KCAIRVENAYKRHSSKL-------PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~-------~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig 78 (321)
.++++++|++|.|..+. ..+++||||+|++||++||+|+||||||||-|+|+||++|++|+|.++|.+...+.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc
Confidence 46799999999996431 37999999999999999999999999999999999999999999999998743222
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
..+..+++.++++.+++.. +++++++|||||+||++|||||+.+|+++++
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~ 133 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVA 133 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEe
Confidence 2344567888999999853 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMK 225 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~ 225 (321)
|||+|+||...+.++.+++.++++ .|.|.+++|||+..++. |||+++|..|+|++.|+.++++.+...+
T Consensus 134 DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 134 DEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred cCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 999999999999999999999984 59999999999999988 9999999999999999999998765433
No 288
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-46 Score=340.25 Aligned_cols=217 Identities=29% Similarity=0.439 Sum_probs=195.8
Q ss_pred ceEEEEeEEEEeCCC-------------------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 7 CAIRVENAYKRHSSK-------------------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-------------------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
.|+.++|++|.|... ...++.|+||+|++|+++|++|||||||||++|+|+|++.|++|.|
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 368889999887421 1248999999999999999999999999999999999999999999
Q ss_pred EECCccc--------CeEEEEc-CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHH
Q psy106 68 HLSITSK--------KQLGFMP-QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQ 137 (321)
Q Consensus 68 ~~~g~~~--------~~ig~v~-Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGq 137 (321)
.++|.++ +++++|+ |...+++++.+.|-+......|..+.++.+++.+.+.+.++++. ++.+++.||-||
T Consensus 82 ~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq 161 (325)
T COG4586 82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ 161 (325)
T ss_pred EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH
Confidence 9999865 4688776 55678888888888887778888999999999999999999975 788999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
|.|+.||.||+++|++|+|||||-|||..++..+.+.+++.+ +++.||+++||+++.+.. ||||+.|++|+++++|+.
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence 999999999999999999999999999999999999999998 569999999999999987 999999999999999999
Q ss_pred hHHHhhcc
Q psy106 216 KVLLEKYN 223 (321)
Q Consensus 216 ~~l~~~~~ 223 (321)
+++..++.
T Consensus 242 ~~l~~~f~ 249 (325)
T COG4586 242 AQLQEQFG 249 (325)
T ss_pred HHHHHHhC
Confidence 99987654
No 289
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.4e-45 Score=372.78 Aligned_cols=208 Identities=29% Similarity=0.383 Sum_probs=178.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|+++ +++|+|+||++++||.+||+|||||||||+++.|+|+++|++|+|.+||.+. ++|+|
T Consensus 329 I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 329 IEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 8999999999842 5799999999999999999999999999999999999999999999998764 68999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL-----QALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l-----l~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
|||++.+|. -|++||+.++..- .++++..+.++.+ .+.+ +++. .......||||||||++||||++++|
T Consensus 408 V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Ecccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999998 5999999876321 2344444433222 2222 2221 23445689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++++||||||+||+.+.+.+.+.+.++. +|+|+++++|.++.+..||+|++|++|++++.|+.+++.++
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999876 57899999999999999999999999999999999999865
No 290
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-44 Score=369.85 Aligned_cols=206 Identities=26% Similarity=0.318 Sum_probs=176.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.+||+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++||+||++
T Consensus 322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~q~~~ 397 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--VKLAYVDQSRD 397 (556)
T ss_pred CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEeCchh
Confidence 358999999999987 56999999999999999999999999999999999999999999998532 3699999997
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+++.+|+.||+.+.....+.... ......+++.+++. . .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 398 ~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 398 ALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred hcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 788899999999875433222211 12344578888885 2 5889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC-CEEE-EecChhHHHh
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK-GILL-EESPPKVLLE 220 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~-G~i~-~~g~~~~l~~ 220 (321)
||+.++..++++|+++. | |||++|||++++.. ||++++|++ |++. ..|+.++..+
T Consensus 476 LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 476 LDVETLRALEEALLEFP--G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99999999999998873 4 89999999999977 999999996 7876 4777776543
No 291
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-45 Score=367.52 Aligned_cols=206 Identities=25% Similarity=0.369 Sum_probs=172.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCccc----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSK---------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~---------- 74 (321)
.++|+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|.++|++.
T Consensus 258 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 258 EPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 468999999999987 5699999999999999999999999999999999998876 799999987531
Q ss_pred CeEEEEcCCCCCCC--CCCHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHH
Q psy106 75 KQLGFMPQQISLYP--EFTIDEMICYYGL----IYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~--~ltv~e~l~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~a 146 (321)
+++||+||++.++. ..++.+++.+... .+.......+++++++++.+++.. .++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 45999999976543 3467666543211 111111223456778889999864 588899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEecCChhHHh-h-cCEEEEEeCCEEEEec
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTHYIDEAK-K-SHMIGLMRKGILLEES 213 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g-~tIil~tH~l~~~~-~-~drv~il~~G~i~~~g 213 (321)
|+.+|++|||||||+|||+.+++.++++|++++++| .|||++|||++++. . ||++++|++|++++..
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999998765 57999999999995 3 8999999999988764
No 292
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.9e-44 Score=338.21 Aligned_cols=202 Identities=25% Similarity=0.294 Sum_probs=165.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.+.|+++|+++. + +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++|+||++.
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~~ 108 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFSW 108 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCccc
Confidence 357999999985 3 4599999999999999999999999999999999999999999999987 4999999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHcCC--c-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALLHL--N-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l--~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+++. |+.||+.+.... ......+. +...++.+.. . ..++++.+||+|||||++|||||+.+|+++|||
T Consensus 109 l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLD 184 (282)
T cd03291 109 IMPG-TIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184 (282)
T ss_pred cccc-CHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8875 999999764211 11111111 1111111111 0 123456899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 158 EPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||+|||+.++..+.+.+ .+++ ++.|||++||+++++..||++++|++|+++..|+++++.+
T Consensus 185 EPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 185 SPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999865 4554 5799999999999987799999999999999999988764
No 293
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-44 Score=368.40 Aligned_cols=205 Identities=26% Similarity=0.317 Sum_probs=175.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.+||+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+.+|++|+|.+++. .+|||+||++
T Consensus 320 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--~~i~~v~q~~~ 395 (552)
T TIGR03719 320 DKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--VKLAYVDQSRD 395 (552)
T ss_pred CeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc--eEEEEEeCCcc
Confidence 468999999999987 56999999999999999999999999999999999999999999998542 3699999997
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+++.+|+.||+.+....++.... ......+++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 396 ~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 396 ALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred ccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 488889999999875432222211 123446788888853 5889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC-CEEE-EecChhHHH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK-GILL-EESPPKVLL 219 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~-G~i~-~~g~~~~l~ 219 (321)
||+.++..++++|+++. + |||++|||++++.. ||++++|++ |++. ..|+.++..
T Consensus 474 LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 474 LDVETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred CCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 99999999999999873 4 89999999999987 999999997 5776 557765543
No 294
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=9.3e-45 Score=379.61 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=171.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. .+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 59999999999753 25699999999999999999999999999999999999999999999999763 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+|+||++.+|+ .|++||+.++.. ..++++ +.++++..++ +. ......+||||||||++|||
T Consensus 558 ~~v~Q~~~lF~-gTIreNI~~g~~--~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 558 ALVGQEPVLFS-GSVRENIAYGLT--DTPDEE----IMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred eEEecCccccc-cCHHHHHhcCCC--CCCHHH----HHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 99999999987 499999987531 122322 2233333332 11 23345679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++|+++|||||||+||+.+.+.+.+ . . ..+++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~-~-~-~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE-S-R-SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH-h-h-ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 9999999999999999999999999988 2 2 2368999999999999988999999999999999999998754
No 295
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.1e-44 Score=367.98 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=174.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 59999999999753 4599999999999999999999999999999999999999999999998653 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.++. ...++++..+..+ +.++.+ +++. .......||||||||++|||||+++
T Consensus 413 ~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 413 VVFQDAGLFNR-SIEDNIRVGR--PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred EEecCcccccc-cHHHHHhcCC--CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999975 9999998742 1223333222211 111111 1221 2334557999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|||||||+||+.+.+.+++.|.++. +++|+|++||+++.++.||++++|++|++++.|+.+++...
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 99999999999999999999999998874 47999999999999888999999999999999999988654
No 296
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.4e-45 Score=379.20 Aligned_cols=209 Identities=27% Similarity=0.406 Sum_probs=174.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 473 ~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 473 DIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred cEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 49999999999743 5699999999999999999999999999999999999999999999999763 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
||||++.+|+. |++||+.++.. ...+.++..+.++ +.++.+ +++. .......||||||||++|||||+++
T Consensus 552 ~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 552 YLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EEecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 99999999976 99999987521 1223333222221 111111 1121 2345567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.+.+.+.+.|+++ +|+|+|++||+++.++.||++++|++|++++.|+.+++.++
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999875 47999999999999988999999999999999999998754
No 297
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.6e-44 Score=332.24 Aligned_cols=189 Identities=22% Similarity=0.332 Sum_probs=159.4
Q ss_pred ceeeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 24 YVLDKLCMTVQ-----KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 24 ~iL~~isl~i~-----~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+.+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +++|+||++.+++.+|+.||+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~~~~~tv~e~l~~ 84 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKADYEGTVRDLLSS 84 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccCCCCCCHHHHHHH
Confidence 36777777776 79999999999999999999999999999999999875 69999999987778999999875
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
....... . .....++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.++|++
T Consensus 85 ~~~~~~~-~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 85 ITKDFYT-H---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred Hhhhccc-c---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 4322211 1 123456778888865 6889999999999999999999999999999999999999999999999999
Q ss_pred HHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEE--EecChhHHH
Q psy106 178 LAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILL--EESPPKVLL 219 (321)
Q Consensus 178 l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~--~~g~~~~l~ 219 (321)
+++ .|+|||++|||++++.. ||++++|+++..+ ..++|..+.
T Consensus 161 ~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 161 FAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 875 58999999999999986 9999999765433 345555543
No 298
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-44 Score=369.34 Aligned_cols=207 Identities=28% Similarity=0.372 Sum_probs=175.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|++++|++..+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 4999999999975335699999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------cc----CCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FK----RKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~----~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ...+.+ ++.++++..+++. +| .....||||||||++||||
T Consensus 410 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 410 LVSQDVVLFND-TIANNIAYGRT-EQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred EEccCcccccc-cHHHHHhcCCC-CCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 99999998875 99999986521 012232 2333444443311 12 2345799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++++|++++||||||+||+.+.+.+++.|.++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 999999999999999999999999999998874 57999999999999888999999999999999999998653
No 299
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-45 Score=338.18 Aligned_cols=200 Identities=29% Similarity=0.453 Sum_probs=178.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------cCeEEE
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------KKQLGF 79 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------~~~ig~ 79 (321)
|+.+++|+ --=+++|+.+.-.++||.|+||||||||+|+|+|+.+|+.|.|.++|.- .++|||
T Consensus 5 ~~~~~lG~----~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGY 80 (352)
T COG4148 5 NFRQRLGN----FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGY 80 (352)
T ss_pred ehhhhcCc----eEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeee
Confidence 44556665 2347899999878999999999999999999999999999999998853 178999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|||+..+||++||+.|+.|+.... .....+.+.+++++++ ++++|.+|||||||||||+|||+.+|++|+|||
T Consensus 81 VFQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE 154 (352)
T COG4148 81 VFQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred EeeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC
Confidence 999999999999999999875432 2344567788899987 799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|.++||...+++++-.+.++.+ -+.-|+.+||.++|+.+ ||++++|++|++.+.|+.+++....
T Consensus 155 PLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 155 PLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred chhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9999999999999999999985 48899999999999988 9999999999999999999998654
No 300
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.4e-44 Score=366.72 Aligned_cols=206 Identities=24% Similarity=0.355 Sum_probs=175.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+.+|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 4899999999975435699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-----------Ccc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-----------LNH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-----------l~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ..+.++.. .+++..+ ++. .+.....||||||||++||||
T Consensus 393 ~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~----~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa 465 (569)
T PRK10789 393 VVSQTPFLFSD-TVANNIALGRP--DATQQEIE----HVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465 (569)
T ss_pred EEccCCeeccc-cHHHHHhcCCC--CCCHHHHH----HHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 12232222 2222222 221 235567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++||||||++||+.+++.+++.|+++. +|+|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 466 ll~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc
Confidence 999999999999999999999999999998875 68999999999999888999999999999999999988754
No 301
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.9e-44 Score=366.76 Aligned_cols=209 Identities=21% Similarity=0.310 Sum_probs=176.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 334 ~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 59999999999753 3589999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH-----HHHH--cCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-----LQAL--LHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----ll~~--~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+++ .|++||+.++.. ..+.++..+..+. .+.. .+++. .......||||||||++|||||+++
T Consensus 413 ~v~q~~~lf~-~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 413 TVFQDAGLFN-RSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred EEccCCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999886 599999987521 1233333222211 1111 12332 3456788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 99999999999999999999999998874 58999999999999988999999999999999999988654
No 302
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.6e-44 Score=367.70 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=174.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|++++|++ . .|+++||+|.+||++||+||||||||||+|+|+|+++|++|+|.++ .++||+||++.
T Consensus 338 ~~~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~ 410 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIK 410 (590)
T ss_pred ceEEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEeccccc
Confidence 468999999999976 3 5999999999999999999999999999999999999999999986 36999999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
+++++||.||+.+....+. . .....++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 411 ~~~~~tv~e~l~~~~~~~~--~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 411 PDYDGTVEDLLRSITDDLG--S---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 (590)
T ss_pred CCCCCcHHHHHHHHhhhcC--h---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 8889999999986532221 1 124567888889865 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 165 PVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
+.++..++++|+++++ .|+|||++|||++++.. |||+++|++ ++...|+.
T Consensus 486 ~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999999975 58999999999999977 999999964 77777663
No 303
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.5e-44 Score=323.57 Aligned_cols=187 Identities=20% Similarity=0.243 Sum_probs=158.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-ECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|. +++... .+.+.+.+++.+|+.||+.+....+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----~~~~~~~l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----PLGANSFILPGLTGEENARMMASLY 77 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----ccccccccCCcCcHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999997 666432 2345677889999999999877666
Q ss_pred CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy106 104 GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g 182 (321)
+....+.. ..+.+..+++. .++++++||+|||||++|||||+.+|+++||||||+++|+.+++.+++.+.+..+ +
T Consensus 78 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~ 153 (213)
T PRK15177 78 GLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-Q 153 (213)
T ss_pred CCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-C
Confidence 55433322 23334556654 5788999999999999999999999999999999999999999999998865433 4
Q ss_pred ceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 183 RTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 183 ~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
.|+|++||+++++.. ||++++|++|++++.++.++..
T Consensus 154 ~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 154 KGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred CcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 689999999999976 9999999999999999988764
No 304
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.7e-44 Score=373.26 Aligned_cols=210 Identities=27% Similarity=0.409 Sum_probs=176.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+.+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 5999999999975435699999999999999999999999999999999999999999999999763 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH-----HHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-----EYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.+... ..+.++..+.. .+.++.+ +++. .......||||||||++|||||+++
T Consensus 535 ~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 535 VVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred EEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999998874 99999986421 12233322221 1122222 2322 3445678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|||||||+||+.+++++.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 99999999999999999999999999874 58999999999999988999999999999999999998754
No 305
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.3e-44 Score=363.77 Aligned_cols=206 Identities=27% Similarity=0.375 Sum_probs=174.2
Q ss_pred eEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|+... +.+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 599999999997522 4699999999999999999999999999999999999999999999998652 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+|+||++.+|+. |++||+.++.. ..+.+ .+.++++..++ +. .......||||||||++|||
T Consensus 417 ~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 417 ALVPQDPVLFAA-SVMENIRYGRP--DATDE----EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred eEEccCCccccc-cHHHHHhcCCC--CCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHH
Confidence 999999998875 99999986421 11222 22233333332 21 23445679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++|+++|||||||+||+.+++.+++.++++. +++|+|++||+++.+..||+++.|++|++++.|+++++.++
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 9999999999999999999999999999999875 58999999999999888999999999999999999887653
No 306
>KOG0058|consensus
Probab=100.00 E-value=1.5e-44 Score=366.33 Aligned_cols=211 Identities=28% Similarity=0.402 Sum_probs=181.6
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++||++.|+.. ..++|+|+||+|++||++||+||||+||||+.++|..++.|++|+|.+||.+. ++|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 49999999999864 25699999999999999999999999999999999999999999999999874 689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHc-CCcc-----ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL--QALL-HLNH-----FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l--l~~~-~l~~-----~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|+|-|+|.+|.. |+.||+.|+.. ..+.+++.+.++.+ -++. ++++ ...+..+||||||||+||||||++
T Consensus 545 g~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 545 GLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred eeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 999999999975 99999998765 44444444333221 1111 1221 245667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhc
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||.+|||||.||+||.++...+.+.|.++.+ ++|||++.|.+..++.||+|+++++|++++.|+-++++++.
T Consensus 622 ~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 622 NPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred CCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 9999999999999999999999999988764 59999999999999999999999999999999999998753
No 307
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=367.63 Aligned_cols=201 Identities=20% Similarity=0.334 Sum_probs=174.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.++|+++|+++.|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++||+||+.
T Consensus 310 ~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~ 385 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQL 385 (638)
T ss_pred CceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcch
Confidence 458999999999987 66999999999999999999999999999999999999999999998642 4799999975
Q ss_pred -CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 85 -SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 85 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
.+.+..|+.+++.. .. .....+.+..+++.+++. ..++++++|||||||||+||+||+.+|++|||||||+
T Consensus 386 ~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~ 459 (638)
T PRK10636 386 EFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459 (638)
T ss_pred hhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 35566778776532 11 112235567788899985 3688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHH
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLL 219 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~ 219 (321)
|||+.++..+.++|.++ .| |||++|||++++.. |||+++|++|+++ +.|+.++..
T Consensus 460 ~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 460 HLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999887 34 99999999999987 9999999999997 789988874
No 308
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=356.38 Aligned_cols=206 Identities=28% Similarity=0.422 Sum_probs=179.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.++++|++++|++++.++|+|+||++++||-++|+|++|||||||+++|+|.++|++|+|.++|.+. +.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 6899999999998777899999999999999999999999999999999999999999999998653 4799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~a 146 (321)
+++|.+.+|.. |+++|+.+... ..++ +.+.++++.+++++ .+.....||||||||++|||+
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~--~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANP--DASD----EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCC--CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 99999999976 99999986421 2233 33334455555422 234457899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++|.+++||||||.||||.+.+++++++.+-. +|+|+|++||++..+++||||++|++|+++++|+.+++..+
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 999999999999999999999999999998765 48999999999999999999999999999999999998763
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-43 Score=337.17 Aligned_cols=217 Identities=24% Similarity=0.355 Sum_probs=196.1
Q ss_pred cceEEEEeEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--
Q psy106 6 KCAIRVENAYKRHSSK---------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~---------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-- 74 (321)
.+.++.+++.+.|.-+ ...+++++||++.+||.+||+|.||||||||=++|.++++++ |+|.+.|.+.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 4579999999998421 145899999999999999999999999999999999999876 9999998763
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQ 138 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqk 138 (321)
+++-.||||| ++-|.|||.+.+.-+...+. .+..+..+++.++++.+|++. .+++|+++|||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 5789999998 58899999999988777664 566777888889999999975 6899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
||+|||||++.+|++++||||||+||...+.++.++++++. +.|.+-+++|||+..+.. ||+|++|++|+|++.|+.+
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~ 512 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTE 512 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHH
Confidence 99999999999999999999999999999999999999997 569999999999999987 9999999999999999999
Q ss_pred HHHhhcc
Q psy106 217 VLLEKYN 223 (321)
Q Consensus 217 ~l~~~~~ 223 (321)
++++++.
T Consensus 513 ~if~~P~ 519 (534)
T COG4172 513 AVFANPQ 519 (534)
T ss_pred HHhcCCC
Confidence 9987654
No 310
>KOG0059|consensus
Probab=100.00 E-value=6.6e-44 Score=380.29 Aligned_cols=216 Identities=31% Similarity=0.519 Sum_probs=203.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
..+.++|++|.|+.... |++++||.|++||++|++|||||||||+++||+|..+|++|++.++|.+. +.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999998432 99999999999999999999999999999999999999999999987654 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+||.||+..+++.+|.+|++.++++.+|.+..+.++.++.+++.+++.+ .+++++.||||||+|+++|.|++.+|++++
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999998888888999999999964 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||+|+||.+|+.+|+++.+++++|+.||++||.++|++. |||+++|.+|++.+.|+++++++++.
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 999999999999999999999999888899999999999998 99999999999999999999987653
No 311
>KOG0055|consensus
Probab=100.00 E-value=8.1e-44 Score=377.94 Aligned_cols=210 Identities=25% Similarity=0.384 Sum_probs=176.0
Q ss_pred eEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|+... .++|+++||+|++|+.++|+|||||||||++++|.+++.|++|+|.++|.+. .+|
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~i 429 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI 429 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhc
Confidence 489999999998753 4799999999999999999999999999999999999999999999999874 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH-----HHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-----EYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|.|.|+|.+|. .|++||+.|+.. +...++..+.. .+....+ +.+- ...+--+||||||||+||||||++
T Consensus 430 glV~QePvlF~-~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 430 GLVSQEPVLFA-TTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred Ceeeechhhhc-ccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh
Confidence 99999998875 699999987531 11223322222 1111111 1111 223445699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++||||||||+||+++++.+.+.|.+. .+|+|.|+++|++..++.||++++|++|+|++.|+.+|+...
T Consensus 507 ~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 507 NPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred CCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 99999999999999999999999999775 468999999999999999999999999999999999999875
No 312
>KOG0057|consensus
Probab=100.00 E-value=1.2e-43 Score=349.93 Aligned_cols=203 Identities=28% Similarity=0.358 Sum_probs=177.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|+++.|+.+ +++|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|+++|.+. +-||
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 49999999999974 459999999999999999999999999999999999999 899999999874 5699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||+..+|++ |+..|+.++... .+. +.+.+..+..++++ ...+...|||||||||+||||
T Consensus 429 ~VPQd~~LFnd-TIl~NI~YGn~s--as~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 429 VVPQDSVLFND-TILYNIKYGNPS--ASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred EeCCcccccch-hHHHHhhcCCCC--cCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence 99999999987 999999875321 122 23333445555422 234566899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||+++++|||||+||.++.+++++.+.+ ...|+|+|++-|+++.+..||+|+++++|++.+.|+.++++.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999988 456899999999999999999999999999999999999876
No 313
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-43 Score=335.49 Aligned_cols=220 Identities=25% Similarity=0.352 Sum_probs=195.7
Q ss_pred CcceEEEEeEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc---
Q psy106 5 DKCAIRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK--- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~--~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~--- 74 (321)
.++.++++|+++.|+ ++...++++|||+|.+||.+||+|.||||||-+.+.++||++. -+|+|.++|.+.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 356899999999996 3336799999999999999999999999999999999999864 378999999763
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQ 137 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGq 137 (321)
.+|+++||+| ++.|-.|+...+.-..+.+ +.+..+.++++.++++.+++.+ ++.+|++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 4899999998 4777788887776655554 5677888899999999999953 478999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
||||.||+||+++|++||.||||++||...+.+++++|++++ +.|++++++|||+..+.+ ||||++|.+|++++.|+.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 999999999999999999999999999999999999999998 569999999999999987 999999999999999999
Q ss_pred hHHHhhccc
Q psy106 216 KVLLEKYNM 224 (321)
Q Consensus 216 ~~l~~~~~~ 224 (321)
++++..+..
T Consensus 243 ~~lF~~PqH 251 (534)
T COG4172 243 ETLFAAPQH 251 (534)
T ss_pred HHHhhCCCC
Confidence 999876543
No 314
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.1e-43 Score=362.42 Aligned_cols=204 Identities=24% Similarity=0.268 Sum_probs=174.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.++|+++|+++.|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+ |.. -+|||++|++
T Consensus 317 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-~~i~y~~q~~~ 392 (635)
T PRK11147 317 KIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-LEVAYFDQHRA 392 (635)
T ss_pred CceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-cEEEEEeCccc
Confidence 458999999999987 66999999999999999999999999999999999999999999998 433 3699999986
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+++++||.||+.+........ .....+..+++.+++. . .++++++|||||||||+||+||+.+|++|||||||+|
T Consensus 393 ~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred ccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 5889999999997643211111 1124466778888874 3 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe-CCEEEE-ecChhHH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR-KGILLE-ESPPKVL 218 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~-~G~i~~-~g~~~~l 218 (321)
||+.++..+.++++++ +.|||++|||++++.. ||++++|+ +|++.. .|+.++.
T Consensus 471 LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 471 LDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999776 4599999999999977 99999998 899865 5666665
No 315
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-43 Score=360.80 Aligned_cols=204 Identities=24% Similarity=0.288 Sum_probs=169.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
||+++||+|+|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++||++|++..+
T Consensus 1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--~~i~~~~q~~~~~ 76 (638)
T PRK10636 1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--WQLAWVNQETPAL 76 (638)
T ss_pred CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCC
Confidence 5899999999998 67999999999999999999999999999999999999999999999875 3599999975433
Q ss_pred CCCCHHHHHHHHH-----------------------HHhC----CCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHH
Q psy106 88 PEFTIDEMICYYG-----------------------LIYG----MSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQ 138 (321)
Q Consensus 88 ~~ltv~e~l~~~~-----------------------~~~~----~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqk 138 (321)
..++.+++.-.. ...+ ....+.+.++..+++.+++. ..++++.+||||||
T Consensus 77 -~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 77 -PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred -CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence 246655443110 0000 00112335677888999985 36889999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~ 216 (321)
|||+||+||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|++. +.|+.+
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYS 232 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHH
Confidence 9999999999999999999999999999999999998765 5699999999999977 9999999999996 467776
Q ss_pred HHH
Q psy106 217 VLL 219 (321)
Q Consensus 217 ~l~ 219 (321)
...
T Consensus 233 ~~~ 235 (638)
T PRK10636 233 SFE 235 (638)
T ss_pred HHH
Confidence 654
No 316
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-42 Score=314.82 Aligned_cols=212 Identities=24% Similarity=0.382 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEeCCC----------------------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q psy106 7 CAIRVENAYKRHSSK----------------------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~----------------------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~ 64 (321)
++|+++||+|.|.-. ...+|+||||++++||.+||+|+||||||||+|+|+|.++|++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 568889998877321 1359999999999999999999999999999999999999999
Q ss_pred cEEEECCcccCeEEEEcC-CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHH
Q psy106 65 GNIHLSITSKKQLGFMPQ-QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 65 G~I~~~g~~~~~ig~v~Q-~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~ 142 (321)
|+|.++|+ ++++.. ...+.|++|++||+.+.+.+.+++.++.+++++++.++-+|.. .++|++++|.||+-|++
T Consensus 82 G~v~v~G~----v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLa 157 (249)
T COG1134 82 GKVKVTGK----VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLA 157 (249)
T ss_pred ceEEEcce----EehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHH
Confidence 99999876 454443 3467889999999999999999999999999999999999876 79999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|.|...+|++||+||-.+--|+.-+++-.+.+.++.++++|||++|||++.+.+ |||+++|++|++...|+++++...
T Consensus 158 Fsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 158 FSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999999998888999999999999987 999999999999999999988754
Q ss_pred c
Q psy106 222 Y 222 (321)
Q Consensus 222 ~ 222 (321)
+
T Consensus 238 Y 238 (249)
T COG1134 238 Y 238 (249)
T ss_pred H
Confidence 3
No 317
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.5e-43 Score=360.55 Aligned_cols=198 Identities=27% Similarity=0.407 Sum_probs=177.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~ 93 (321)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.+. +.+||+||++.+++.+||+
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~ 117 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR 117 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence 66999999999999999999999999999999999999885 79999999763 5799999999999999999
Q ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCC------ccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy106 94 EMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 94 e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~------~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL 163 (321)
||+.|.+.... .+.++.+++++++++.+++.+ .|.+++ .|||||||||+||+||+.+|++++|||||+||
T Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgL 197 (617)
T TIGR00955 118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL 197 (617)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcch
Confidence 99998776542 234555667889999999865 566665 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEecCChh-HH-hhcCEEEEEeCCEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLAESGRTILITTHYID-EA-KKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~tIil~tH~l~-~~-~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+.++..+++.+++++++|+|||+++|++. ++ +.||++++|++|++++.|+++++.+
T Consensus 198 D~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 198 DSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999999999878999999999996 55 4599999999999999999998854
No 318
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.4e-42 Score=383.98 Aligned_cols=211 Identities=27% Similarity=0.352 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc-----Ce
Q psy106 7 CAIRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK-----KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~--~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~-----~~ 76 (321)
.+++++||++.|+ ++.+.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.++|.+. ++
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3689999999995 222579999999999999999999999999999999999997 7899999999753 56
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCC----ccChHHHHHHHHHHHHh
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCG----SLSGGQQRRVSLAITLL 148 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~----~LSgGqkQRv~iA~aL~ 148 (321)
+||+||++.+++.+||+||+.+.+.++. .+.++..++++++++.+++.+ .|+.++ .|||||||||+||+||+
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 9999999988999999999998776542 334455567888999999865 677776 79999999999999999
Q ss_pred cCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH--hhcCEEEEEeCC-EEEEecChhH
Q psy106 149 HDPE-LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA--KKSHMIGLMRKG-ILLEESPPKV 217 (321)
Q Consensus 149 ~~P~-lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~--~~~drv~il~~G-~i~~~g~~~~ 217 (321)
.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++||+++.. +.||++++|++| ++++.|++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9997 9999999999999999999999999988899999999999974 459999999997 9999999743
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.3e-42 Score=357.56 Aligned_cols=206 Identities=23% Similarity=0.308 Sum_probs=170.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
+||+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. ..++|++|.+..
T Consensus 2 ~~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--~~~~~l~q~~~~ 77 (635)
T PRK11147 2 SLISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--LIVARLQQDPPR 77 (635)
T ss_pred cEEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--CEEEEeccCCCC
Confidence 47999999999988 67999999999999999999999999999999999999999999999863 357899987643
Q ss_pred CCCCCHHHHHHHH------------------------------HHHh----CCCHHHHHHHHHHHHHHcCCccccCCCCc
Q psy106 87 YPEFTIDEMICYY------------------------------GLIY----GMSLQQIKEKAEYLQALLHLNHFKRKCGS 132 (321)
Q Consensus 87 ~~~ltv~e~l~~~------------------------------~~~~----~~~~~~~~~~~~~ll~~~~l~~~~~~~~~ 132 (321)
....++.+++... .... .....+...++..+++.+++. .++++.+
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~ 156 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSS 156 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhh
Confidence 3334666654210 0000 000112235567788888886 4788999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||++|||.+++.. ||++++|++|+++.
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998873 599999999999977 99999999999974
Q ss_pred -ecChhHHHh
Q psy106 212 -ESPPKVLLE 220 (321)
Q Consensus 212 -~g~~~~l~~ 220 (321)
.|+.++...
T Consensus 234 ~~g~~~~~~~ 243 (635)
T PRK11147 234 YPGNYDQYLL 243 (635)
T ss_pred ecCCHHHHHH
Confidence 588776543
No 320
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1e-42 Score=296.76 Aligned_cols=143 Identities=31% Similarity=0.454 Sum_probs=135.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
++++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ..++|+||
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~------ 70 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ------ 70 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc------
Confidence 478999999987 56999999999999999999999999999999999999999999999885 57999998
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus 71 --------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 71 --------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred --------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 169 EEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 169 ~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
..+.+.++++ +.|++++||+++++.. ||++++|++|+
T Consensus 107 ~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 107 EALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999876 4799999999999976 99999999985
No 321
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-43 Score=309.32 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC-ccc----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI-TSK----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g-~~~----------~ 75 (321)
+.++++|++++|++ ..+|+|+||++.+||.-+|+|||||||||++..|+|..+|+.|+++++| .+. .
T Consensus 4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 57899999999999 7799999999999999999999999999999999999999999999988 332 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL--------IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
.||--||.|..|+++||+||+.+... +......+.+++++++++..++.+ .++.+..||.||||++.|++.
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 68899999999999999999987532 222222344568899999999975 688899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++++|++|+||||++|+-.....+.-+++++++. +.+|+++.|||.+++. |++|-+|+.|.+.++|+.+++..+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 9999999999999999999999999999999974 5899999999999987 999999999999999999998765
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.3e-43 Score=353.04 Aligned_cols=189 Identities=29% Similarity=0.358 Sum_probs=160.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.+. +++|
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 5999999999986444699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----------c-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----------H-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+ .|++||+.++.. ..+++ .+.++++..++. . ......+||||||||++||||
T Consensus 400 ~v~Q~~~lf~-~ti~~Ni~~~~~--~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 400 WVPQHPFLFA-GTIAENIRLARP--DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred EEcCCCcccC-cCHHHHHhccCC--CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 9999999987 499999987531 12222 223333333331 1 234557899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
|+++|+++|||||||+||+.+.+.+.+.+.++. +++|+|++||+++.+..||++++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999998875 589999999999999889999875
No 323
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.8e-43 Score=323.39 Aligned_cols=193 Identities=23% Similarity=0.322 Sum_probs=164.0
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCccc------
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-----------LSITSK------ 74 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~------ 74 (321)
.|++|+|+++ +.+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|+ ++|.+.
T Consensus 4 ~~~~~~y~~~-~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999763 25999999 4999999999999999999999999999999999996 556432
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
.+++|+||+..+++. ++.+++.... .....++.+.++++.+++.. .++++.+||+|||||++|||||+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred hhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 137899999888874 7778776532 12223456678888999865 68889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
.+|+++||||||++||+.++..+.++|++++++|+|||++||+++++.. ||++++|+ |++.+.|
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999999999999999999998778999999999999986 99999995 5565533
No 324
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.9e-44 Score=306.90 Aligned_cols=196 Identities=22% Similarity=0.341 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
++++++.+.-++ .++|+++||++.+||+.+|.||||||||||+|+++-|++|++|++++.|++. ++|+|
T Consensus 4 le~kq~~y~a~~--a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 4 LELKQVGYLAGD--AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred hHHHHHHhhcCC--CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 566666655566 6799999999999999999999999999999999999999999999999874 68999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+-|.|.+|++ ||+||+.|+...++... .++++..+++.+++++ +++++.+||||||||++|+|-|..-|++|+||
T Consensus 82 ~~Q~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 82 CAQTPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHcCcccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999987 99999999877664322 2456677889999875 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
||||+||+.+++.+-++|..+. ++..+++.+|||.+++-+ +|+++-+..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999999886 779999999999999755 999999999876
No 325
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.7e-42 Score=352.57 Aligned_cols=194 Identities=24% Similarity=0.323 Sum_probs=164.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 322 ~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 322 TLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred eEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 59999999999753 4699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-cc---C--CCCccChHHHHHHHHHHHHhcCCC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK---R--KCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~---~--~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
|+||++.+|+. |+++| . . ...++.+.+.++.+++.. .+ . ...+||||||||++||||++++|+
T Consensus 401 ~v~q~~~lf~~-ti~~n---~-----~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ 469 (547)
T PRK10522 401 AVFTDFHLFDQ-LLGPE---G-----K--PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERD 469 (547)
T ss_pred EEecChhHHHH-hhccc---c-----C--chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999988875 77776 1 0 111234555666666643 21 1 135899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
++|||||||+||+.+++.+++.+.+.. +.|+|+|++||+++.+..||++++|++|++++..
T Consensus 470 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999987664 4589999999999888889999999999998763
No 326
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-42 Score=386.12 Aligned_cols=205 Identities=24% Similarity=0.322 Sum_probs=176.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+.+.+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.+. ++|+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 4999999999965435699999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||+|.+|+. |++||+.++. ..++++. .++++..++ +. ......+||||||||++||||
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~---~~sdeei----~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFS---EHNDADL----WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCC---CCCHHHH----HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 99999999986 9999997542 2233332 233333332 21 234456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+++.+.+.+.|++.. +++|+|+++|+++.+..||||++|++|++++.|++++++++
T Consensus 1386 LLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998864 58999999999999999999999999999999999999764
No 327
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2e-42 Score=352.89 Aligned_cols=195 Identities=22% Similarity=0.336 Sum_probs=165.1
Q ss_pred eEEEEeEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 8 AIRVENAYKRHSSK---LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~---~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 59999999999753 13599999999999999999999999999999999999999999999998753 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccC------CCCccChHHHHHHHHHHHHh
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKR------KCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~------~~~~LSgGqkQRv~iA~aL~ 148 (321)
+++|++|++.+|+. |+++|.. .+..++.+.++++..+++. .++ ...+||||||||++||||++
T Consensus 417 ~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 417 LFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred hCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence 69999999998875 7777731 1112344556777777653 221 23679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEe
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~-~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~ 212 (321)
.+|+++||||||++||+.+++.+.+.+. .++.+|+|+|++||+++.++.||+|++|++|++++.
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998664 455678999999999998888999999999999764
No 328
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.3e-42 Score=383.21 Aligned_cols=206 Identities=24% Similarity=0.368 Sum_probs=174.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC------------------------
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL------------------------ 62 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p------------------------ 62 (321)
.|+++||+++|++. ..++|+|+||+|++|+.+||+|||||||||++++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 49999999999742 24699999999999999999999999999999999999998
Q ss_pred ------------------------------CccEEEECCccc---------CeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 63 ------------------------------NGGNIHLSITSK---------KQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 63 ------------------------------~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
++|+|.++|.+. ++||||||+|.+|+ .|++||+.++..
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-- 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-- 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC--
Confidence 699999999764 57999999999996 699999998621
Q ss_pred CCCHHHHHHHHHHHHHHcCC-------cc-cc----CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 104 GMSLQQIKEKAEYLQALLHL-------NH-FK----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l-------~~-~~----~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
..+.++..+ +++..++ +. .+ .....||||||||++|||||+++|++||||||||+||+.+.+.+
T Consensus 1322 ~at~eeI~~----A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I 1397 (1466)
T PTZ00265 1322 DATREDVKR----ACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397 (1466)
T ss_pred CCCHHHHHH----HHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 223333332 3333222 21 23 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCceEEEecCChhHHhhcCEEEEEeC----CEEE-EecChhHHHh
Q psy106 172 WNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRK----GILL-EESPPKVLLE 220 (321)
Q Consensus 172 ~~ll~~l~-~~g~tIil~tH~l~~~~~~drv~il~~----G~i~-~~g~~~~l~~ 220 (321)
.+.|.++. .+++|+|++||.++.++.||+|++|++ |+++ +.|+.+++++
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999886 468999999999999999999999999 9955 8999999875
No 329
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-43 Score=317.06 Aligned_cols=207 Identities=31% Similarity=0.459 Sum_probs=179.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
+++|+++|++.+|++ +++|+|+|++|++||-.+|+||||||||||+++++|..+|++|.+.+.|+.. +
T Consensus 29 ~~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 29 EPLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred cceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 367999999999999 7799999999999999999999999999999999999999999999877642 6
Q ss_pred eEEEEcCCC--CCCCCCCHHHHHHHH--HH--HhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQI--SLYPEFTIDEMICYY--GL--IYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~--~l~~~ltv~e~l~~~--~~--~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+||||.... .+.++.+++|.+.-+ .. .|. ...++..+++..+++.+++.+ .+++..+||-||||||.|||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRAL 186 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARAL 186 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHH
Confidence 799997543 455667888866422 11 122 223455677888999999976 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES--GRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~--g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
+.+|++|||||||+|||..+++.+.+.+.++... +.++|+|||+.+++.. .++++.+++|++++.|.
T Consensus 187 v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999743 7899999999999977 69999999999998773
No 330
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-42 Score=385.29 Aligned_cols=205 Identities=25% Similarity=0.323 Sum_probs=177.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.+. ++|+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 5999999999975434699999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
+|||+|.+|+. |++||+.++. ..++++ +.++++..++ +. .......||||||||++||||
T Consensus 1317 iVpQdp~LF~G-TIreNLd~~~---~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1317 IIPQAPVLFSG-TVRFNLDPFN---EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARA 1388 (1622)
T ss_pred EECCCCccccc-cHHHHhCcCC---CCCHHH----HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999986 9999997542 223333 2333333332 21 233446899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+++|+++.+..||||++|++|+|++.|++++++++
T Consensus 1389 LLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1389 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998874 58999999999999999999999999999999999999864
No 331
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.5e-41 Score=354.65 Aligned_cols=201 Identities=19% Similarity=0.293 Sum_probs=168.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++|+++|+++.|+++ +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .+|||+||++.
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~ 582 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHV 582 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEecccc
Confidence 3689999999999642 45999999999999999999999999999999999999999999998753 47999999862
Q ss_pred CCCCCCHHHHHHHHH-HHh-CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 86 LYPEFTIDEMICYYG-LIY-GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 86 l~~~ltv~e~l~~~~-~~~-~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+.+++.++..+.. ..+ +.. .+.+..+++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 583 --~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~ 656 (718)
T PLN03073 583 --DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN 656 (718)
T ss_pred --ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3455655543221 111 211 245667888899862 578999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHH
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVL 218 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l 218 (321)
|||+.++..+.+.+.+. +| |||++|||++++.. ||++++|++|+++ +.|++++.
T Consensus 657 ~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 657 HLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999998887664 34 99999999999987 9999999999998 67877664
No 332
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.3e-42 Score=381.92 Aligned_cols=199 Identities=23% Similarity=0.364 Sum_probs=165.0
Q ss_pred eEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC-Cccc---------Ce
Q psy106 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-ITSK---------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~-g~~~---------~~ 76 (321)
.|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+. ++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 589999999998532 369999999999999999999999999999999999999999999994 4432 56
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHH----------hCC---C-------------------------------------
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLI----------YGM---S------------------------------------- 106 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~----------~~~---~------------------------------------- 106 (321)
||||||++.+|+. |++||+.++... +.. .
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 9999999999974 999999885310 000 0
Q ss_pred -HHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy106 107 -LQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173 (321)
Q Consensus 107 -~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ 173 (321)
....++.+.++++..+++. .++...+||||||||++|||||+++|++||||||||+||+.++..+.+
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 0001123444555554421 245678999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 174 HLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 174 ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
.|+++++ +|+|+|++||+++.++.||+|++|++|
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999875 689999999999999779999999986
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6e-42 Score=302.04 Aligned_cols=152 Identities=28% Similarity=0.382 Sum_probs=137.9
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT 91 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~lt 91 (321)
.|++|+|++ +.++++ +|++++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|+||++.
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~i~~~~q~~~------ 71 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI---TPVYKPQYID------ 71 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE---EEEEEcccCC------
Confidence 589999998 668998 4999999999999999999999999999999999999999885 4899998653
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
||+|||||++|||||+.+|++++|||||++||+.+++.+
T Consensus 72 -----------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l 110 (177)
T cd03222 72 -----------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA 110 (177)
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-ceEEEecCChhHHhh-cCEEEEEeCCEEEEe--cChh
Q psy106 172 WNHLLYLAESG-RTILITTHYIDEAKK-SHMIGLMRKGILLEE--SPPK 216 (321)
Q Consensus 172 ~~ll~~l~~~g-~tIil~tH~l~~~~~-~drv~il~~G~i~~~--g~~~ 216 (321)
.+.++++++++ .|||++||+++++.. ||++++|+++..+.+ |+|.
T Consensus 111 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 111 ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999987664 999999999999986 999999998755433 5554
No 334
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-41 Score=379.32 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=176.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+.+...+|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.+. ++|+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 4999999999976434699999999999999999999999999999999999999999999999764 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||+|.+|+. |++||+..+. ..++++. .++++..++ +. .......||||||||++||||
T Consensus 1364 iVpQdp~LF~g-TIr~NLdp~~---~~sdeei----~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1364 IIPQDPVLFSG-SLRMNLDPFS---QYSDEEV----WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred EECCCCcccCc-cHHHHcCccc---CCCHHHH----HHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 99999999987 9999997322 2333332 333343332 21 223446799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+++.+.+.+.|++.. +++|+|+++|+++.+..||||++|++|+|++.|++++++++
T Consensus 1436 LLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1436 LLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998764 57999999999999999999999999999999999999764
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.9e-41 Score=372.56 Aligned_cols=209 Identities=23% Similarity=0.364 Sum_probs=181.3
Q ss_pred eEEEEeEEEEeCC-----------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc
Q psy106 8 AIRVENAYKRHSS-----------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~-----------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 74 (321)
.+..+||++..+. +.+.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 4899999988641 124699999999999999999999999999999999999763 689999998643
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHcCCcc-ccCCC-----CccChHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNH-FKRKC-----GSLSGGQQR 139 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~-~~~~~-----~~LSgGqkQ 139 (321)
+.+||++|++.+++.+||+||+.+.+... ..+.++..+.++++++.+++.+ .++.+ +.|||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 45899999999999999999999876543 1233444566888999999875 56665 589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH-H-hhcCEEEEEeC-CEEEEecChh
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-A-KKSHMIGLMRK-GILLEESPPK 216 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~-~-~~~drv~il~~-G~i~~~g~~~ 216 (321)
||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++. + +.||++++|++ |++++.|++.
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 9999999999999999999999999999999999999998889999999999984 5 45999999996 8999999874
No 336
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.8e-41 Score=378.28 Aligned_cols=205 Identities=22% Similarity=0.342 Sum_probs=176.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++||+++|+++.+.+|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 4999999999976545699999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------cc----CCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FK----RKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~----~~~~~LSgGqkQRv~iA~a 146 (321)
|+||+|.+|+. |++|||..+. ..+++ .+.++++..++.+ +| ....+||||||||++||||
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~~---~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPFL---EASSA----EVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred EECCCCccccc-cHHHHhCccc---CCCHH----HHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 99999999986 9999996421 22333 3334444444321 23 3345799999999999999
Q ss_pred HhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHD-PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~-P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++ |++||||||||+||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|+|++.|+++++.++
T Consensus 1460 LL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1460 LLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred HhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9996 99999999999999999999999998764 47999999999999999999999999999999999999753
No 337
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.8e-42 Score=346.36 Aligned_cols=176 Identities=27% Similarity=0.388 Sum_probs=148.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
.|+++|++++|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|||
T Consensus 334 ~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 334 TLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred eEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 59999999999764 3599999999999999999999999999999999999999999999999764 48999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------cc----CCCCccChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FK----RKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~----~~~~~LSgGqkQRv~iA~aL 147 (321)
|||++.+|+. |++||+.++.. ..++++ +.++++..++++ .| .....||||||||++|||||
T Consensus 413 V~Q~~~lF~~-TI~eNI~~g~~--~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 413 FAQDAHLFDT-TVRDNLRLGRP--DATDEE----LWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred EccCcccccc-cHHHHHhccCC--CCCHHH----HHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 9999999976 99999987521 122332 333444433321 22 33457999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
+++|+++|||||||+||+.+.+.+.+.+.++. +++|+|++||++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999998763 579999999984
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.3e-41 Score=351.34 Aligned_cols=193 Identities=23% Similarity=0.322 Sum_probs=162.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.+|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++++|+||++.+
T Consensus 450 ~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--~~~i~~v~Q~~~l 526 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--KGKLFYVPQRPYM 526 (659)
T ss_pred CeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--CCcEEEECCCCCC
Confidence 469999999999643 4699999999999999999999999999999999999999999999865 3579999999998
Q ss_pred CCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCcc-ccCC---------CCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 87 YPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH-FKRK---------CGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~-~~~~---------~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
++. |++||+.+........ ....++.+.++++.++++. .+++ ..+||||||||++|||||+++|+++|
T Consensus 527 ~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 527 TLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887 9999998753221110 0011234556777777754 3332 37899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
|||||++||+.+++.+.+.+++ .|+|+|++||+++.++.||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999998865 48999999999999888999999973
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-41 Score=295.93 Aligned_cols=218 Identities=21% Similarity=0.299 Sum_probs=193.0
Q ss_pred cceEEEEeEEEEeCC-------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----
Q psy106 6 KCAIRVENAYKRHSS-------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---- 74 (321)
++.++++|++|.|.. +...+++.|||++++|+..|++|.||||||||.|||+|.++|++|+|.++|...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence 356899999998742 235699999999999999999999999999999999999999999999998753
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS--LYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA 144 (321)
++|-++||+|+ +-|.+.+.+.+..+.++.. ...++..+++.+.+.++|+- +.+-++..||-|||||||+|
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA 161 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA 161 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence 68999999985 6777888888877776643 44556667788889999983 46788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||+.+|+++|.||..++||...+.++.++..++. +.|.+-|.++.++..+.. +|.|++|++|++++.|++.+++..+
T Consensus 162 RALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 162 RALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred HHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 99999999999999999999999999999999998 459999999999999987 9999999999999999999998765
Q ss_pred c
Q psy106 223 N 223 (321)
Q Consensus 223 ~ 223 (321)
.
T Consensus 242 ~ 242 (267)
T COG4167 242 L 242 (267)
T ss_pred c
Confidence 4
No 340
>KOG0055|consensus
Probab=100.00 E-value=2.5e-41 Score=359.04 Aligned_cols=208 Identities=26% Similarity=0.426 Sum_probs=179.2
Q ss_pred EEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 9 IRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
|+++||+++|+... .++|+|+||+|++|+.+||+|||||||||.+.+|-.++.|++|.|.+||.+. +++|
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 89999999998532 5699999999999999999999999999999999999999999999999874 6899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH--HHH-cCCcc-cc----CCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL--QAL-LHLNH-FK----RKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l--l~~-~~l~~-~~----~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
.|.|+|.||+ -|++||+.|+ ....+..++.+.++.+ -++ ..++. .| .+..+||||||||+|||||+++|
T Consensus 1068 lVsQEP~LF~-~TIrENI~YG--~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1068 LVSQEPVLFN-GTIRENIAYG--SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred eeccCchhhc-ccHHHHHhcc--CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 9999999997 5999999987 2124555444433221 111 12332 33 45569999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|++|||||.||+||.++.+.+.+.|.+.. .|+|.|++.|.+..++.||.|+++++|+|++.|+-+++.+
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999998864 6899999999999999999999999999999999999976
No 341
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.5e-40 Score=367.19 Aligned_cols=203 Identities=24% Similarity=0.325 Sum_probs=175.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++||+++|+...+.+|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.++|.+. ++++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 599999999997544679999999999999999999999999999999999997 799999999764 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------ccC----CCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FKR----KCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~~----~~~~LSgGqkQRv~iA~a 146 (321)
|+||+|.+|+. |+++||.... ..++ +.+..+++..++.. ++. ....||||||||++||||
T Consensus 1296 ~IpQdp~LF~G-TIR~NLdp~~---~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1296 VIPQKVFIFSG-TFRKNLDPYE---QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred EEeCCCccCcc-CHHHHhCccc---CCCH----HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 99999999986 9999996432 1222 33444555554421 222 234799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++|++||||||||+||+.+.+.+.+.|++.. +++|||++||.++.+..||+|++|++|+|++.|+|+++++
T Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999998864 4799999999999998999999999999999999999975
No 342
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.7e-41 Score=327.64 Aligned_cols=211 Identities=26% Similarity=0.413 Sum_probs=180.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
-.+.++++++.-++.++++++++||++++||.+||+||||||||||.|+|.|..+|.+|.|++||.+. ++|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 36999999998777768899999999999999999999999999999999999999999999999764 689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHcCCcc-ccCC----CCccChHHHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALLHLNH-FKRK----CGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l~~-~~~~----~~~LSgGqkQRv~iA~aL 147 (321)
||+||+..+|+. |+.||+.-+.. ..+.+.+-+. +.++.-. ++. .|.. -..||||||||++|||||
T Consensus 413 GYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 413 GYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILR--LPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred CcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 999999999987 99999964321 1112211111 2222222 222 3333 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhc
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
-.+|.+++||||-|+||......+.+.|.+.+++|.|+|++||.+..+..+|+|.+|++|++...|+.+|++.+.
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988653
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-40 Score=283.02 Aligned_cols=146 Identities=40% Similarity=0.634 Sum_probs=136.0
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEc
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMP 81 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~ 81 (321)
++|+++.|++ +.+++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|... +.++|+|
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 6899999987 5699999999999999999999999999999999999999999999988642 4577777
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
| ||+||+||++||||++.+|++++|||||+
T Consensus 80 q--------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 80 Q--------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred e--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 7 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
|||+.++..+.+.++++++++.|++++||+++++.. ||++++|++|+
T Consensus 110 ~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 110 GLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999987668999999999999988 89999999875
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.8e-40 Score=289.16 Aligned_cols=151 Identities=26% Similarity=0.340 Sum_probs=132.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+++|+|+||++++|++++|+||||||||||+|++. +++|++.+++... .+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 67999999999999999999999999999999986 3799999876531 24777766
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHD--PELLILDEPTSGIDPVIAEEIWNH 174 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~--P~lllLDEPtsgLD~~~~~~i~~l 174 (321)
.++++.+++.. .++++.+||+|||||++|||||+.+ |+++||||||++||+.+++.+.+.
T Consensus 68 ----------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~ 131 (176)
T cd03238 68 ----------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV 131 (176)
T ss_pred ----------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 12456677753 5788999999999999999999999 999999999999999999999999
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+++++++|.|||++||++++++.||++++|++|+.
T Consensus 132 l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 132 IKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99988789999999999999867999999977654
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.3e-40 Score=339.57 Aligned_cols=183 Identities=25% Similarity=0.361 Sum_probs=158.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCccc-------
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-----------LSITSK------- 74 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~------- 74 (321)
+++++||.+ ..+|++++ ++++|+++||+||||||||||+|+|+|+++|++|+|. ++|.+.
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 489999862 35999999 9999999999999999999999999999999999997 777542
Q ss_pred ----CeEEEEcCCCCCCCCC---CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEF---TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~l---tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
.++++.+|....++.+ ||.|++... +..++++++++.+++.. .++++.+|||||||||+||+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAA 226 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 2467777765544433 999988631 12356777888899875 689999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
|+.+|++|||||||++||+..+..+++.|+++++ |+|||++|||++++.. ||++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999988 9999999999999987 9999999863
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.1e-40 Score=362.49 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=171.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC----CCCccEEEECCccc--------CeEEEEcCCCCCCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN----VLNGGNIHLSITSK--------KQLGFMPQQISLYPEF 90 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~----~p~~G~I~~~g~~~--------~~ig~v~Q~~~l~~~l 90 (321)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+. +.++|++|++.+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 45999999999999999999999999999999999986 57899999998642 3599999999999999
Q ss_pred CHHHHHHHHHHHhC-------CCHHHHHHH-HHHHHHHcCCcc-ccC-----CCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 91 TIDEMICYYGLIYG-------MSLQQIKEK-AEYLQALLHLNH-FKR-----KCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 91 tv~e~l~~~~~~~~-------~~~~~~~~~-~~~ll~~~~l~~-~~~-----~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+|++.|.+.... .+.++..++ .+.+++.+++.+ .++ .++.|||||||||+||+||+.+|++++|
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 99999998765431 223332233 466788899865 444 4578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCCh-hHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYI-DEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l-~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||+|||+.++.++++.|+++++ .|+|||+++|++ +++.. ||++++|++|++++.|+++++..
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 999999999999999999999986 599999999997 56655 99999999999999999988753
No 347
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.4e-40 Score=330.85 Aligned_cols=206 Identities=27% Similarity=0.325 Sum_probs=173.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.+|+++|+++.|++ +.+|+|+||++.+|+.+||+|+||||||||||+|+|...|++|+|...+. .++||++|++.+
T Consensus 2 ~~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~ 77 (530)
T COG0488 2 SMITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPL 77 (530)
T ss_pred ceEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCc
Confidence 57999999999988 77999999999999999999999999999999999999999999987643 479999999999
Q ss_pred CCCCCHHHHHHHHHHH-hCC-----------------------------CHHHHHHHHHHHHHHcCCccccCCCCccChH
Q psy106 87 YPEFTIDEMICYYGLI-YGM-----------------------------SLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~-~~~-----------------------------~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG 136 (321)
++..||.+.+...... +.. ...+.+.++..++.-+++...++++++||||
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG 157 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGG 157 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHH
Confidence 9999999987643211 000 0011224455566666665458899999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE-ecC
Q psy106 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE-ESP 214 (321)
Q Consensus 137 qkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~-~g~ 214 (321)
||.||+||+||+.+|++|||||||+.||..+...+-+.|++. +| |+|+||||-+++.. |++|+-++.|++.. .|.
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence 999999999999999999999999999999999999999754 46 99999999999988 99999999998754 566
Q ss_pred hhHHH
Q psy106 215 PKVLL 219 (321)
Q Consensus 215 ~~~l~ 219 (321)
-+...
T Consensus 235 y~~~~ 239 (530)
T COG0488 235 YSSYL 239 (530)
T ss_pred HHHHH
Confidence 55543
No 348
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-39 Score=288.96 Aligned_cols=213 Identities=24% Similarity=0.335 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc----------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK---------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~---------- 74 (321)
.|++++||+.+-.++ +.+|+++||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|++.
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 579999999999873 36999999999999999999999999999999999985 78999999999874
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcCCcc--ccCCCC-ccChHHHHHHHHHHHHh
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS---LQQIKEKAEYLQALLHLNH--FKRKCG-SLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~ll~~~~l~~--~~~~~~-~LSgGqkQRv~iA~aL~ 148 (321)
..|...||.|.=+|..++.+.|.......... ..+..+.+++.++.++++. ++|.+. .+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 45888999999999999999987654432111 2355677788888899875 688885 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+|++.|||||-||||..+-+.+.+.+.+++++|.+++++||+-+.+.+ .|++.+|-+|+|+.+|.+ ++...
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 9999999999999999999999999999999999999999999999987 699999999999999999 56543
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.5e-40 Score=365.29 Aligned_cols=206 Identities=25% Similarity=0.409 Sum_probs=172.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
.|+++|+++.|++..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|||+||++.++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~ 711 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQ 711 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCcccc
Confidence 6999999999975335699999999999999999999999999999999999999999999986 599999999887
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHcCC-c-----cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQALLHL-N-----HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~~~l-~-----~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+ .|++||+.++... ..+..++..+. +.+.++. + ..+.+..+||||||||++||||+..+|+++|||||
T Consensus 712 ~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 712 N-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred C-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5 6999999875321 22222221111 1122211 1 13567889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH--hCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLA--ESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~--~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+||+...+.+++.+.+.. .+|+|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 788 ~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 788 LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc
Confidence 99999999999999887542 358999999999999988999999999999999999998653
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=290.58 Aligned_cols=209 Identities=27% Similarity=0.383 Sum_probs=174.6
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
|++++|+++.|.++. +++|+++|++|++|+|+-++|.||||||||+++|+|-++|++|.|.++|.+. .
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 578899998886543 6799999999999999999999999999999999999999999999999764 3
Q ss_pred eEEEEcCCC--CCCCCCCHHHHHHHHHHH---hCCCH---HHHHHHHHHHHHHcCC--cc-ccCCCCccChHHHHHHHHH
Q psy106 76 QLGFMPQQI--SLYPEFTIDEMICYYGLI---YGMSL---QQIKEKAEYLQALLHL--NH-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 76 ~ig~v~Q~~--~l~~~ltv~e~l~~~~~~---~~~~~---~~~~~~~~~ll~~~~l--~~-~~~~~~~LSgGqkQRv~iA 144 (321)
.++-|||+| ..++.||+.||+.+.... ++... ...++...+.++..++ +. ++.+++-|||||||-++++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 477899998 479999999999875433 12221 1122223334444443 33 6789999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHh-hcCEEEEEeCCEEEEecChh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAK-KSHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~-~~drv~il~~G~i~~~g~~~ 216 (321)
+|-++.|++|+|||-|++|||.+...++++=.++. +.+.|.+|+||+++.+- +.+|.++|++|+|+.+-+-+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 99999999999999999999999999999999987 45889999999999985 48999999999999875443
No 351
>KOG0061|consensus
Probab=100.00 E-value=2.1e-39 Score=333.50 Aligned_cols=213 Identities=32% Similarity=0.468 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CccEEEECCccc------C
Q psy106 8 AIRVENAYKRHSSK---LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL---NGGNIHLSITSK------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~---~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p---~~G~I~~~g~~~------~ 75 (321)
-+..+|++..-.++ .+.+|+|||.++++||+.||+||+||||||||++|+|-... .+|+|.+||+.. +
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 36788888877554 36799999999999999999999999999999999999864 689999999543 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCC-----ccChHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCG-----SLSGGQQRRVSLAIT 146 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~-----~LSgGqkQRv~iA~a 146 (321)
.+|||.|+..+++.+||+|++.|.+.+.- .+.++.+++++++++.+++.. .|..++ .+||||||||+||.-
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 79999999999999999999999887642 355778889999999999975 566665 599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH-H-hhcCEEEEEeCCEEEEecChhHHHh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-A-KKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~-~-~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|++||.+|+|||||||||..++.++.+.|++++++|+|||++-|.+.- + +..|++++|.+|++++.|+++++.+
T Consensus 185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999999999999999999999999999999999889999999999974 4 4599999999999999999987754
No 352
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=282.01 Aligned_cols=214 Identities=25% Similarity=0.400 Sum_probs=179.8
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---c------
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---K------ 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---~------ 74 (321)
.++|.++++++||.|+. ...++|+||++.+||+.||+|++|||||||++||++-+.|++|+|.+...+ .
T Consensus 2 ~~~PLL~V~~lsk~Yg~--~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 2 MDKPLLSVSGLSKLYGP--GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred CCCcceeehhhhhhhCC--CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 45679999999999998 559999999999999999999999999999999999999999999985321 1
Q ss_pred ---------CeEEEEcCCCC--CCCCCCHHHHH----H-HHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChH
Q psy106 75 ---------KQLGFMPQQIS--LYPEFTIDEMI----C-YYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGG 136 (321)
Q Consensus 75 ---------~~ig~v~Q~~~--l~~~ltv~e~l----~-~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgG 136 (321)
..=|+|-|+|. +-...|...|+ . .+.+.|+ .+++.+...++.+.++. .|..+.++|||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchH
Confidence 23699999984 32222333333 2 2333343 34556667888888764 57889999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 137 qkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
||||+.|||-|+..|+++++||||.|||...+.+++++++.+. +-|.+++++|||+..+.- +||..+|++|++++.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 9999999999999999999999999999999999999999997 559999999999999987 99999999999999999
Q ss_pred hhHHHhhcc
Q psy106 215 PKVLLEKYN 223 (321)
Q Consensus 215 ~~~l~~~~~ 223 (321)
.+.++.++.
T Consensus 236 TDrvLDDP~ 244 (258)
T COG4107 236 TDRVLDDPH 244 (258)
T ss_pred ccccccCCC
Confidence 988876543
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-39 Score=358.94 Aligned_cols=198 Identities=22% Similarity=0.295 Sum_probs=172.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~ 93 (321)
+.+|+|+|+++++||+++|+||||||||||||+|+|.++|+ +|+|.++|.+. +.++|++|++.+++.+||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 56999999999999999999999999999999999999998 99999998753 5699999999999999999
Q ss_pred HHHHHHHHHhCC----------CHHHH------------------------HHHHHHHHHHcCCcc-c-----cCCCCcc
Q psy106 94 EMICYYGLIYGM----------SLQQI------------------------KEKAEYLQALLHLNH-F-----KRKCGSL 133 (321)
Q Consensus 94 e~l~~~~~~~~~----------~~~~~------------------------~~~~~~ll~~~~l~~-~-----~~~~~~L 133 (321)
|++.|.+...+. ...+. +..++.+++.+++++ . ++.++.|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 999997765421 11110 012466888889864 2 5667899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCCh-hHHhh-cCEEEEEeCCEEE
Q psy106 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYI-DEAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 134 SgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l-~~~~~-~drv~il~~G~i~ 210 (321)
||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ .|+|+|+++|++ +++.. ||++++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999999999975 599999999997 46655 9999999999999
Q ss_pred EecChhHHHh
Q psy106 211 EESPPKVLLE 220 (321)
Q Consensus 211 ~~g~~~~l~~ 220 (321)
+.|+++++..
T Consensus 418 y~G~~~~~~~ 427 (1470)
T PLN03140 418 YQGPRDHILE 427 (1470)
T ss_pred EeCCHHHHHH
Confidence 9999998864
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.8e-39 Score=358.38 Aligned_cols=202 Identities=22% Similarity=0.341 Sum_probs=166.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.|+++|++++|+.. .+++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+.. ...+|+|++|+|.+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---IRGSVAYVPQVSWI 690 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---ecCcEEEEcCcccc
Confidence 59999999999742 256999999999999999999999999999999999999999986642 23579999999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-----ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-----FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-----~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++. |++||+.|+.. .+.++. .++++..++ +. ...+..+||||||||++||||+.++|+++
T Consensus 691 f~g-TIreNI~fg~~---~~~e~~----~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 762 (1495)
T PLN03232 691 FNA-TVRENILFGSD---FESERY----WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY 762 (1495)
T ss_pred ccc-cHHHHhhcCCc---cCHHHH----HHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 975 99999998642 223222 223332222 11 22345579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNH-LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~l-l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||||+||+.+.+.+++. +... .+|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 763 LLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 763 IFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 99999999999999988764 5443 368999999999999888999999999999999999998753
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.4e-38 Score=354.39 Aligned_cols=188 Identities=28% Similarity=0.373 Sum_probs=157.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|+||++.+++. |++||+.|+...
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l~~~-Ti~eNI~~g~~~- 513 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPG-TIKDNIIFGLSY- 513 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCccCCc-cHHHHHHhcccc-
Confidence 589999999999999999999999999999999999999999999987 59999999999875 999999976421
Q ss_pred CCCHHHHHHHH-----HHHHHHcCCc---cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-
Q psy106 104 GMSLQQIKEKA-----EYLQALLHLN---HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH- 174 (321)
Q Consensus 104 ~~~~~~~~~~~-----~~ll~~~~l~---~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l- 174 (321)
.....++.. ...++.+... ....+..+||||||||++||||++.+|+++||||||++||+..++.+++.
T Consensus 514 --~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~ 591 (1490)
T TIGR01271 514 --DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591 (1490)
T ss_pred --chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 111111111 1122222111 13456789999999999999999999999999999999999999999984
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.++. +|+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 592 l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 592 LCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 56654 5899999999999998899999999999999999998864
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.6e-39 Score=339.49 Aligned_cols=198 Identities=21% Similarity=0.233 Sum_probs=153.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC---CCCccEEEECCcccCeEEEEcC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN---VLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
..+|+++|++++|++ +.+|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|. |++|
T Consensus 175 ~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~----------~~~Q 242 (718)
T PLN03073 175 IKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL----------HVEQ 242 (718)
T ss_pred ceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE----------EEec
Confidence 357999999999987 56999999999999999999999999999999999964 45666654 4444
Q ss_pred CCCCCCCCCHHHHHH---------------HHHH-----------------HhCCCH-------------------HHHH
Q psy106 83 QISLYPEFTIDEMIC---------------YYGL-----------------IYGMSL-------------------QQIK 111 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~---------------~~~~-----------------~~~~~~-------------------~~~~ 111 (321)
+.. ..+.|+.+.+. +... ..+.+. ...+
T Consensus 243 ~~~-g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVV-GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 432 12233322210 0000 000011 1223
Q ss_pred HHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEec
Q psy106 112 EKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189 (321)
Q Consensus 112 ~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~t 189 (321)
.++..++..+++. . .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivs 398 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVS 398 (718)
T ss_pred HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEE
Confidence 4556677777774 2 57889999999999999999999999999999999999999999999999876 68999999
Q ss_pred CChhHHhh-cCEEEEEeCCEEE-EecChhHHH
Q psy106 190 HYIDEAKK-SHMIGLMRKGILL-EESPPKVLL 219 (321)
Q Consensus 190 H~l~~~~~-~drv~il~~G~i~-~~g~~~~l~ 219 (321)
||++++.. ||++++|++|++. +.|+.++..
T Consensus 399 Hd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999977 9999999999996 677776554
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.5e-39 Score=357.98 Aligned_cols=201 Identities=22% Similarity=0.377 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-cEEEECCcccCeEEEEcCCCC
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.|+++|++++|+.. .+++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+. .+|+|++|+|.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~----~~Iayv~Q~p~ 689 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR----GTVAYVPQVSW 689 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc----CeEEEEcCccc
Confidence 59999999999742 2569999999999999999999999999999999999999999 999875 46999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-----ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-----FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-----~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+++. |++||+.|+... +.+ +.+++++..++ +. ...+..+||||||||++||||+.++|++
T Consensus 690 Lfng-TIreNI~fg~~~---d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 690 IFNA-TVRDNILFGSPF---DPE----RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred cCCC-CHHHHHhCCCcc---cHH----HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 9875 999999986421 222 23333333332 11 2344567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWN-HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~-ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||||||+||+...+.+++ .+..+. +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 762 lLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred EEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 99999999999999888765 555443 58999999999999888999999999999999999998653
No 358
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.8e-37 Score=282.92 Aligned_cols=188 Identities=21% Similarity=0.330 Sum_probs=135.7
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHHcCC--------CCCc----cEEEECC--cc-cCeEEEEcCCCC-
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLL-SCITGQN--------VLNG----GNIHLSI--TS-KKQLGFMPQQIS- 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl-~~l~Gl~--------~p~~----G~I~~~g--~~-~~~ig~v~Q~~~- 85 (321)
..+|+++||+|++||++||+||||||||||+ ..+...- +|.. |.+.... .. ....++.+|++.
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTT 87 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCC
Confidence 5699999999999999999999999999996 3332100 0000 0010000 00 012344555443
Q ss_pred -CCCCCCHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEEEEe
Q psy106 86 -LYPEFTIDE---MICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELLILD 157 (321)
Q Consensus 86 -l~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~lllLD 157 (321)
+.+..++.. ...+....+. .....++ .+.++.+++.. .++++.+||||||||++|||||+.+| +++|||
T Consensus 88 ~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllD 164 (226)
T cd03270 88 SRNPRSTVGTVTEIYDYLRLLFA--RVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLD 164 (226)
T ss_pred CCCCCccHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 234445432 2222221211 1122233 35678888863 58899999999999999999999998 599999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEec
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEES 213 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g 213 (321)
|||+|||+..+..+.+.|++++++|.|||++|||+++++.|||+++| ++|+|+++|
T Consensus 165 EPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 165 EPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99999999999999999999987899999999999998779999999 999999875
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-38 Score=276.06 Aligned_cols=185 Identities=25% Similarity=0.276 Sum_probs=163.7
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLG 78 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig 78 (321)
++++.+|++...+. ..++.++||++.+||++-|.||||||||||+|+|+|+.+|++|+|.+++... +.+-
T Consensus 1 ~~L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~ 78 (209)
T COG4133 1 MMLEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78 (209)
T ss_pred CcchhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHH
Confidence 36788999998888 7799999999999999999999999999999999999999999999987643 3356
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+-..+.+-+.+|+.||+.|...+++... ...+.++++.+++.. .|.++++||-|||+||+|||-.+..+++.|||
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~---~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLD 155 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGN---AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD 155 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCc---hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeec
Confidence 77777888899999999999988876411 245667888899865 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
|||++||+.+...+-.++.+-+.+|-.||++||..-.+.
T Consensus 156 EP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 156 EPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999999988888889999999876553
No 360
>KOG0056|consensus
Probab=100.00 E-value=1.3e-38 Score=310.32 Aligned_cols=209 Identities=26% Similarity=0.410 Sum_probs=177.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|+++.|..+ +++|+||||++.+|+.+|++||+||||||++|++..+...++|.|.+||.+. +.||
T Consensus 537 ~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred eEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 48999999999765 6799999999999999999999999999999999999999999999999875 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HH-HHcCCcc-cc----CCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQ-ALLHLNH-FK----RKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll-~~~~l~~-~~----~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
.||||..+|++ |+..|+.|.. . ..+.++..+.++. +- +.++.++ .+ .+.-+|||||||||||||+++++
T Consensus 616 VVPQDtvLFNd-TI~yNIryak-~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 616 VVPQDTVLFND-TILYNIRYAK-P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred cccCcceeecc-eeeeheeecC-C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 99999999987 8999998742 1 2233343333221 11 2233332 23 34457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|.+++|||.||+||..+.+.+...+.++++ ++|-|++.|.+..+-.||.|.++++|+|++.|.-+++..+
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 999999999999999999999999999985 6788889999999999999999999999999999998765
No 361
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-37 Score=347.90 Aligned_cols=191 Identities=24% Similarity=0.388 Sum_probs=157.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ++|||+||++.+++ .|++||+.++...
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----~~i~yv~Q~~~l~~-~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMN-ATVRGNILFFDEE 747 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----CeEEEEeCCCccCC-CcHHHHHHcCChh
Confidence 569999999999999999999999999999999999999999999874 46999999998875 6999999875321
Q ss_pred hCCCHHHHHH-----HHHHHHHHc--CCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy106 103 YGMSLQQIKE-----KAEYLQALL--HLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174 (321)
Q Consensus 103 ~~~~~~~~~~-----~~~~ll~~~--~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l 174 (321)
..+...+ ..+..++.+ ++. ..+++..+|||||||||+|||||+.+|+++||||||++||+..++.+++.
T Consensus 748 ---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 748 ---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred ---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 1111111 112223333 333 24678899999999999999999999999999999999999999988874
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+.....+|+|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 825 ~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 825 CFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 42222358999999999999988999999999999999999998653
No 362
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-38 Score=267.25 Aligned_cols=194 Identities=26% Similarity=0.401 Sum_probs=169.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc-------CeE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK-------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~-------~~i 77 (321)
|+.++|++.+-++ ...|-++||+|.+||++-|+||+|||||||+.-+.|.+.++ +|++++++++. +++
T Consensus 2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 6889999999888 77999999999999999999999999999999999998875 79999998763 789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|++||++-+||.++|.+|+.|... ...+....++.+...++..+++. .++.+.+||||||-||++-|+|+..|+.++|
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp-~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL 158 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALP-ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL 158 (213)
T ss_pred eeeecccccccccccccceEEecC-cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence 999999999999999999987432 22233345566788899999976 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEecCChhHHhhcCEEEEE
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l-~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
|||+|.||..-+.++.+.+-.. .+.|...+++|||.+.+....||+-|
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999987554 46799999999999998855566543
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=263.30 Aligned_cols=199 Identities=22% Similarity=0.314 Sum_probs=177.4
Q ss_pred eEEEEeEEEEe-----CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---------
Q psy106 8 AIRVENAYKRH-----SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS--------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y-----~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~--------- 73 (321)
.|.++|++|+| ++-.-++++|+||+++.||++++=|||||||||++|+|-|-+.|++|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 49999999998 2323579999999999999999999999999999999999999999999984221
Q ss_pred --------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHH
Q psy106 74 --------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 74 --------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~i 143 (321)
.+.||||.|.....|..+..|.++-+..-.+.+.+..+.++..++..++++. ++-.+.++||||||||.|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 1569999999888898898898887777788888888888999999999975 577899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
||.++.|-++|+|||||++||..+++.+.++|.+-+.+|.+++=+-||-+.=+. |||++-+..
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999988899999999999766566 999987753
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=300.13 Aligned_cols=201 Identities=25% Similarity=0.323 Sum_probs=171.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.++++++|+++.|+++ +.+++++||.|.+|+.+||+||||||||||||+|+|...|.+|+|.+... -++||++|+.
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~ 395 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRD 395 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhh
Confidence 5689999999999764 57999999999999999999999999999999999999999999987533 5799999997
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+.++.|+.|++.-... .. .+..+...+..+++.. ..++++.||||||.|+.+|+.++.+|.+|||||||+.
T Consensus 396 ~l~~~~t~~d~l~~~~~--~~----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 396 ELDPDKTVLEELSEGFP--DG----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred hcCccCcHHHHHHhhCc--cc----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 44577799888763211 10 1355667888888853 5789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEe-cChhHHH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE-SPPKVLL 219 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~-g~~~~l~ 219 (321)
||..++..+.+.|.+. .-|||+||||..+++. |++++.+.+ ++... |..++..
T Consensus 470 LDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 470 LDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999775 4689999999999988 999999998 55544 6655543
No 365
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.4e-35 Score=272.20 Aligned_cols=186 Identities=21% Similarity=0.303 Sum_probs=150.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH--------cC--CCCCcc-----------EEEECCccc--------
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT--------GQ--NVLNGG-----------NIHLSITSK-------- 74 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~--------Gl--~~p~~G-----------~I~~~g~~~-------- 74 (321)
.-|+|+|++|+.|.+++|.|+||||||||++.+. +. ..|..+ -|.++..+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998662 11 012211 233432211
Q ss_pred ---------------------------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--
Q psy106 75 ---------------------------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-- 125 (321)
Q Consensus 75 ---------------------------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-- 125 (321)
..+.|..++...+.+||+.|++.|+....+ .++..++++.+++..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIK 162 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhh
Confidence 124565666666678999999988765431 134556788889975
Q ss_pred ccCCCCccChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 126 FKRKCGSLSGGQQRRVSLAITLLHD---PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
+++++.+||||||||++||+||+.+ |+++||||||+|||+..+..+++.|++++++|.|||++||++++++.||+++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 5889999999999999999999996 7999999999999999999999999999888999999999999997899999
Q ss_pred EE------eCCEEEEecCh
Q psy106 203 LM------RKGILLEESPP 215 (321)
Q Consensus 203 il------~~G~i~~~g~~ 215 (321)
.| ++|++++.|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 99 89999999874
No 366
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=284.98 Aligned_cols=209 Identities=26% Similarity=0.416 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.+.+.|+++.|... +++|+++||++++|+.++++||+|+||||++|++..++.+++|.|.++|.+. +-||
T Consensus 262 ~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 262 AVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred eEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 37899999999764 6799999999999999999999999999999999999999999999999874 5699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHcC-Ccc-ccC----CCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQALLH-LNH-FKR----KCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~~~-l~~-~~~----~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
.|||+..+|++ |...|+.++..- ...++..+.++. .-.+.. +++ .+. +.-.|||||||||+|||+++.+
T Consensus 341 ~VPQDtvLFND-ti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 341 IVPQDTVLFND-TIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred cCcccceehhh-hHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 99999999976 888888875321 222332222221 111111 222 333 3447999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++|+|||.||+||....+++...|++.. .|.|-+++.|.+..+-.||.|++|++|+|++.|+-++++..
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 99999999999999999999999998875 68899999999999999999999999999999999998764
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=8.2e-35 Score=260.52 Aligned_cols=158 Identities=14% Similarity=0.190 Sum_probs=129.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc---------cEEEECCcc------cCeEEEEcCCCCCCCCCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---------GNIHLSITS------KKQLGFMPQQISLYPEFT 91 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~---------G~I~~~g~~------~~~ig~v~Q~~~l~~~lt 91 (321)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|.+ .+++||+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999987653 356555544 26899999999765
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHH
Q psy106 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~ 167 (321)
| +... .++++++++. .+..++++.+||+|||||++||++++ .+|++++|||||+|||+..
T Consensus 89 ------~-----~~~~---~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~ 152 (197)
T cd03278 89 ------Y-----SIIS---QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN 152 (197)
T ss_pred ------e-----eEEe---hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH
Confidence 1 0000 1344455555 22357889999999999999999997 4679999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 168 ~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
+..+++.|+++++ +.|||++||++++++.||+++.|..
T Consensus 153 ~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 153 VERFARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999865 6899999999998877999998864
No 368
>KOG0054|consensus
Probab=100.00 E-value=3.7e-34 Score=309.90 Aligned_cols=204 Identities=24% Similarity=0.393 Sum_probs=172.7
Q ss_pred cceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~ 84 (321)
++.++++|.+++.+. ...+.|+||||+|++|+.+|++||-|||||+||.+|+|.++..+|++.++|. ++|+||.|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~p 591 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQP 591 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEecccc
Confidence 467999999999875 2245899999999999999999999999999999999999999999999986 99999999
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC------------ccccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL------------NHFKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l------------~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
.+++. |++||+.|+..+ .+ ++.++.++.+.| .....+.-+||||||||++||||+-+++|
T Consensus 592 WI~ng-TvreNILFG~~~---d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad 663 (1381)
T KOG0054|consen 592 WIQNG-TVRENILFGSPY---DE----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDAD 663 (1381)
T ss_pred HhhCC-cHHHhhhcCccc---cH----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCC
Confidence 98875 999999986432 12 222233333222 12346777999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||.|+|++|....+.+++-.-...-+++|+|++||.++....||.|++|++|+|.+.|+.+++.+.
T Consensus 664 IYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 664 IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred EEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc
Confidence 999999999999999888887544433468999999999999999999999999999999999999853
No 369
>KOG0054|consensus
Probab=100.00 E-value=2.6e-34 Score=311.11 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=176.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++.+|..+...||+|+||+|++||-+||+|..|||||||+++|-++..|.+|+|.+||.+. ++++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 4999999999987667899999999999999999999999999999999999999999999999874 6899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-ccC----CCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-FKR----KCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-~~~----~~~~LSgGqkQRv~iA~a 146 (321)
.+||||.+|.. |++.||.=+.. .++++.- ++++..++ +. +|. -..++|-||||.+|||||
T Consensus 1218 IIPQdPvLFsG-TvR~NLDPf~e---~sD~~IW----~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1218 IIPQDPVLFSG-TVRFNLDPFDE---YSDDEIW----EALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred eeCCCCceecC-ccccccCcccc---cCHHHHH----HHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHH
Confidence 99999999987 99999862211 1232222 22232222 11 333 346799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++++|+|||.|+++|+++-..+.+.|++-- ++.|||.+-|.++.+..||||+||++|++++.|+|.+++++
T Consensus 1290 LLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1290 LLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred HhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC
Confidence 999999999999999999999999999998743 47999999999999999999999999999999999999875
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.2e-34 Score=240.73 Aligned_cols=123 Identities=33% Similarity=0.638 Sum_probs=107.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcCCCCCCCCCCHHHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.+. +.++|++|++.+++.+|+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999998643 579999999999999999998
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcCCcc-c----cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQALLHLNH-F----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~----~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
...+.+.++++.+++.. . ++++.+||+|||||++||+||+.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12244556667666543 2 44559999999999999999999999999999997
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-33 Score=276.35 Aligned_cols=207 Identities=29% Similarity=0.389 Sum_probs=178.7
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+.+.++++|++..- .++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|.++|++.
T Consensus 260 ~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 260 GEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred CCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence 35678888887531 47999999999999999999999999999999999999999999999853
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHHHHH--h---CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHH
Q psy106 75 KQLGFMPQQI---SLYPEFTIDEMICYYGLI--Y---GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ~~ig~v~Q~~---~l~~~ltv~e~l~~~~~~--~---~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA 144 (321)
..|+|||.|. .++..+++.+|+.+.... . -.+....++.++.+.+.+.+.. .++++.+||||.||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 4699999874 688999999999876211 1 1333444456777788888753 5789999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|.|..+|++|||||||-|+|..++.+++++|++++++|++||++|-+++|+.. ||||++|++|+++.+-+.++
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999976 99999999999998655544
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=1.9e-33 Score=257.58 Aligned_cols=187 Identities=17% Similarity=0.255 Sum_probs=137.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH----------------cCCCCCcc-------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT----------------GQNVLNGG------- 65 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~----------------Gl~~p~~G------- 65 (321)
|+++|. |+|++ ..++++++ |++++|+||||||||||+++|+ +++.+++|
T Consensus 4 i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 455554 45776 55888887 8899999999999999999997 55666666
Q ss_pred -EEEECCcc------------cCeEEEEcCCCCCCC-CCCHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHcCCcc-ccC
Q psy106 66 -NIHLSITS------------KKQLGFMPQQISLYP-EFTIDEMICYYGLIYGMSLQQIKE--KAEYLQALLHLNH-FKR 128 (321)
Q Consensus 66 -~I~~~g~~------------~~~ig~v~Q~~~l~~-~ltv~e~l~~~~~~~~~~~~~~~~--~~~~ll~~~~l~~-~~~ 128 (321)
++.+++.+ .+++||+||+..+++ .+|..|+..+... .+........ ....+.+.+.+.. .++
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-~gl~~~~~~~~~~qg~i~~l~~l~~~~~~ 154 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-AGFSRSNPYYIVPQGKINSLTNMKQDEQQ 154 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-cCCCCCCCcEEEEcCchHHhhhccccccc
Confidence 66665421 145899999888877 4677666554433 3433211000 0112223334432 567
Q ss_pred CCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 129 KCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
++.+||||||||++|||||+. +|+++|+||||+||||.+++.+++.++++++ ++|||++||+.+..+.||++++|
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i~~l 233 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKFYGV 233 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEE
Confidence 899999999999999999973 6899999999999999999999999999865 78899999986655559999988
Q ss_pred e
Q psy106 205 R 205 (321)
Q Consensus 205 ~ 205 (321)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 5
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=9.1e-34 Score=246.20 Aligned_cols=203 Identities=24% Similarity=0.367 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.++.++|+...- -|-.+|.++..||++-++||||||||||+-.++|+. |-+|+|.++|.+. ++-
T Consensus 2 ~l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhR 74 (248)
T COG4138 2 ILMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHR 74 (248)
T ss_pred ceeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHH
Confidence 367888887642 367789999999999999999999999999999987 5699999999874 456
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc-------
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------- 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------- 149 (321)
+|+.|+......|.|..++.+. .+.+.....+.++...+++++ +.|.+++|||||-|||-+|...++
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP 149 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANP 149 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCc
Confidence 8999987766678898887653 233445556777778888865 789999999999999999998876
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
..++|++|||.++||...+..+..+|.+++.+|.+|||++||++-.-+ ||+++.++.|+++..|+.+++++.
T Consensus 150 ~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 150 AGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred cceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 447999999999999999999999999999999999999999998755 999999999999999999998753
No 374
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=3e-34 Score=259.72 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=139.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
|+++|.. .|++ ..+++++++ +++||+||||||||||+++|.-..-.+ + .....+++++++|+..+++
T Consensus 6 l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~---~--~~~~~~~i~~~~~~~~~~~ 72 (212)
T cd03274 6 LVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFR---A--SKMRQKKLSDLIHNSAGHP 72 (212)
T ss_pred EEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccC---H--HHhhhhhHHHHhcCCCCCC
Confidence 6777776 7887 669999988 899999999999999999997221100 0 1111256999999999999
Q ss_pred CCCHHHHHHHHHHH--------hCCCHHHHHH--HHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc----CCCE
Q psy106 89 EFTIDEMICYYGLI--------YGMSLQQIKE--KAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH----DPEL 153 (321)
Q Consensus 89 ~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~----~P~l 153 (321)
.+|+.+++.++... ++........ ...++.+.++++. .++++.+||+|||||++||+|++. +|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 73 NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 99998877665432 2222111000 0134445566654 577889999999999999999974 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
++|||||+||||.++..+++.+++++ ++.|+|++||+.+..+.|||+++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999999999999999999999985 46789999999655556999999974
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=4.1e-32 Score=245.26 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=135.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHHcC-CCCCccEEEEC--------CcccCeE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQ-KSTIYSLLGASGCGKTTLLSCITGQ-NVLNGGNIHLS--------ITSKKQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~-~Gei~~llGpNGaGKSTLl~~l~Gl-~~p~~G~I~~~--------g~~~~~i 77 (321)
.|+++|+. +|.+ . ++++|+.. +|++++|+||||||||||+++|++. .-+..+....+ +.....|
T Consensus 5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEE
Confidence 47888988 6654 2 66777654 5999999999999999999999954 33333433321 1122579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc-------
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------- 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------- 149 (321)
+++||++.-. .++..+ .+.+..+..+.+ .+...++.. .++++.+||+|||||++|||||+.
T Consensus 79 ~~~f~~~~~~--~~~~r~-------~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~ 147 (213)
T cd03279 79 SFTFQLGGKK--YRVERS-------RGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNR 147 (213)
T ss_pred EEEEEECCeE--EEEEEe-------cCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhc
Confidence 9999887321 111111 133333222211 123333333 578899999999999999999985
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 150 ---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 150 ---~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
+|+++||||||++||+..+..+.+.+++++++|.|||++||+++++.. ||++.++++|-
T Consensus 148 ~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 148 GGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 679999999999999999999999999998779999999999999977 99999999884
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.98 E-value=9e-33 Score=255.28 Aligned_cols=188 Identities=20% Similarity=0.250 Sum_probs=141.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCc-c-----------cC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSIT-S-----------KK 75 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~-~-----------~~ 75 (321)
|+++|. ++|.+ ..++. .+. ..+++|+||||||||||+++|++++.|+ .|++...+. + ..
T Consensus 6 ~~~~~f-~~~~~--~~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~ 77 (251)
T cd03273 6 IILDGF-KSYAT--RTVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKA 77 (251)
T ss_pred EEEeCc-cccCc--CEeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEE
Confidence 555555 55654 22222 222 5699999999999999999999999876 457766543 1 24
Q ss_pred eEEEEcCCC---------CCCCCCCHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHcCCc--------------------
Q psy106 76 QLGFMPQQI---------SLYPEFTIDEMICYYGLIYG-M-SLQQIKEKAEYLQALLHLN-------------------- 124 (321)
Q Consensus 76 ~ig~v~Q~~---------~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~ll~~~~l~-------------------- 124 (321)
++++++|++ .+.+.+||.+++........ . ......+.+..+++.+++.
T Consensus 78 ~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~ 157 (251)
T cd03273 78 SVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG 157 (251)
T ss_pred EEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH
Confidence 799999985 34567888887754332111 1 1222345677788888874
Q ss_pred c-ccCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcC
Q psy106 125 H-FKRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199 (321)
Q Consensus 125 ~-~~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~d 199 (321)
. .++++.+||+|||||++||+||+ .+|+++++||||++||+..+..+++.|++++ +|.|+|++||+.+..+.||
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d 236 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNAN 236 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCC
Confidence 1 24788999999999999999998 5789999999999999999999999999985 4899999999966667799
Q ss_pred EEEEEe
Q psy106 200 MIGLMR 205 (321)
Q Consensus 200 rv~il~ 205 (321)
+++-+.
T Consensus 237 ~v~~~~ 242 (251)
T cd03273 237 VLFRTR 242 (251)
T ss_pred EEEEEE
Confidence 998765
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=6.1e-32 Score=243.12 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=128.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHH----cCCCCCccEEEEC------CcccCeEEEEcCCC-----CCCCCCCHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCIT----GQNVLNGGNIHLS------ITSKKQLGFMPQQI-----SLYPEFTIDE 94 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~----Gl~~p~~G~I~~~------g~~~~~ig~v~Q~~-----~l~~~ltv~e 94 (321)
++++.+| +++|+||||||||||+++|. |..+|++|.+..+ +.....++++||++ .....+|+.|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 4567777 99999999999999999994 9999988866421 22235799999988 3445568888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 95 MICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRR------VSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQR------v~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
|+.+. +..+ .... .++++.+||+||+|| ++||+|++.+|+++++||||++||+..+
T Consensus 96 ~~~~~------~~~~----~~~~--------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~ 157 (204)
T cd03240 96 NVIFC------HQGE----SNWP--------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENI 157 (204)
T ss_pred ceeee------chHH----HHHH--------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHH
Confidence 87542 1111 1111 267889999999996 7899999999999999999999999999
Q ss_pred H-HHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeC
Q psy106 169 E-EIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 169 ~-~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
. .+.+++.+++++ |.|||++||+++.+..||+++.|++
T Consensus 158 ~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 158 EESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9 999999999765 8999999999998877999998864
No 378
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=1.7e-30 Score=276.75 Aligned_cols=126 Identities=25% Similarity=0.375 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCC
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP---ELLILDEPTSGID 164 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P---~lllLDEPtsgLD 164 (321)
||+.|++.|+....+ . ....++++.+++.. +++++.+||||||||++||++|+.+| +++||||||+|||
T Consensus 792 ltv~E~l~~f~~~~~-----i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD 865 (943)
T PRK00349 792 MTVEEALEFFEAIPK-----I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 865 (943)
T ss_pred CcHHHHHHHHHhchh-----h-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence 688888887654322 1 22345778888864 58899999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
+..+..+++.|++++++|.|||++||+++++..||+++.| ++|++++.|+++++...
T Consensus 866 ~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 866 FEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 9999999999999988899999999999999779999999 79999999999998754
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=9.8e-30 Score=281.68 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=158.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHHcCCCC----------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLS---------CITGQNVL---------------- 62 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~---------~l~Gl~~p---------------- 62 (321)
.+++++++. ..|+|+||+|++||+++|.|+||||||||++ .+.|...+
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 577777752 2699999999999999999999999999999 55554322
Q ss_pred --------CccEEEECCc----c----------------------------c--CeEEE----EcCCC------------
Q psy106 63 --------NGGNIHLSIT----S----------------------------K--KQLGF----MPQQI------------ 84 (321)
Q Consensus 63 --------~~G~I~~~g~----~----------------------------~--~~ig~----v~Q~~------------ 84 (321)
.|+.+++-|. . . +-+|+ ++...
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 2223432110 0 0 11222 22111
Q ss_pred -----CCCCCCCHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHh---cCC
Q psy106 85 -----SLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLL---HDP 151 (321)
Q Consensus 85 -----~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~---~~P 151 (321)
..|..+||.|++.+...- +....++..+++ ++++.+++.. +++++.+||||||||++||+||+ .+|
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCC
Confidence 246678999999876542 122334455556 4678888864 58899999999999999999998 699
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEe------CCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMR------KGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~------~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+..++.++++|++++++|.|||++||+++++..||++++|. +|++++.|+++++..
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999888999999999999995599999996 799999999999865
No 380
>KOG0065|consensus
Probab=99.97 E-value=4.4e-31 Score=281.37 Aligned_cols=210 Identities=28% Similarity=0.366 Sum_probs=178.8
Q ss_pred eEEEEeEEEEe--CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCccEEEECCccc------CeE
Q psy106 8 AIRVENAYKRH--SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--LNGGNIHLSITSK------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y--~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p~~G~I~~~g~~~------~~i 77 (321)
....+|+.+.- .++++++|+|||=-+.||..+||+|+|||||||||++|+|-.. ..+|+|.++|.+. +.+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 34555555433 3344789999999999999999999999999999999998542 2368889999764 679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCCc----cChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCGS----LSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~----LSgGqkQRv~iA~aL~~ 149 (321)
|||-|++.-.+.+||+|-|.|.+.++. .+.++..+.++++++.+++++ .+.-++. ||..||+|+.||--|+.
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec
Confidence 999999877799999999999987752 345555678999999999975 4555555 99999999999999999
Q ss_pred CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH--HhhcCEEEEEeC-CEEEEecChhH
Q psy106 150 DP-ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE--AKKSHMIGLMRK-GILLEESPPKV 217 (321)
Q Consensus 150 ~P-~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~--~~~~drv~il~~-G~i~~~g~~~~ 217 (321)
+| .+|+|||||||||.+++..+++.++++++.|.||+.+-|.+.- .+..|++++|++ |+.++.|++.+
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99 9999999999999999999999999999999999999999875 367999999975 69999999865
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=245.67 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=187.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+.+.++++||+..-..+ ...++++||+|.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|++.
T Consensus 254 g~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 35789999999875443 4689999999999999999999999999999999999999999999999763
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHHHHH------hC-CCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHH
Q psy106 75 -KQLGFMPQQI---SLYPEFTIDEMICYYGLI------YG-MSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -~~ig~v~Q~~---~l~~~ltv~e~l~~~~~~------~~-~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv 141 (321)
..+||+|.|. .+-+++|+.||+.+.... ++ ......++.+..+.+.++... ...++.+||||++||+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 4699999986 578899999999765322 11 445667788888999998853 4677899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
-+||-|..+|++||+.+||-|||..+.+.+.+.|.+.+++|++|+++|-|++|+.. ||||++|.+|+++...++++
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 99999999999999999999999999999999999999999999999999999976 99999999999998887765
No 382
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=9.8e-29 Score=262.86 Aligned_cols=123 Identities=24% Similarity=0.385 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhc---CCCEEEEeCCCCCCC
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLH---DPELLILDEPTSGID 164 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~---~P~lllLDEPtsgLD 164 (321)
||+.|.+.|+...... .....+++.+++.. +++++.+|||||+||++||++|+. +|+++||||||+|||
T Consensus 790 ~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD 863 (924)
T TIGR00630 790 MTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH 863 (924)
T ss_pred CcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCC
Confidence 5666666665433221 12345677888864 588999999999999999999997 599999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHH
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVL 218 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l 218 (321)
+..+..+++.|++++++|.|||++||+++++..||+++.| ++|++++.|+++++
T Consensus 864 ~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 864 FDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999988899999999999999779999999 79999999998875
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.96 E-value=2.8e-29 Score=224.89 Aligned_cols=166 Identities=18% Similarity=0.176 Sum_probs=125.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-----cE----EEECCcccCeEEEEcCCCCCCCCCCHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-----GN----IHLSITSKKQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-----G~----I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
.++++++++.+| +.+|+||||||||||+.+|.-....+. |. +.-.|.....|.+.+|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~------ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN------ 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC------
Confidence 357788888887 889999999999999999974332221 11 11123333568899988776651
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL----LHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL----~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
.... .....+.++++. -...++++++||+|||||++||+|+ +.+|+++||||||+|||+..+..+
T Consensus 84 --------~~~~-~~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~ 152 (198)
T cd03276 84 --------PLCV-LSQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIS 152 (198)
T ss_pred --------cCCH-HHHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHH
Confidence 1111 112344455554 2235788999999999999999999 589999999999999999999999
Q ss_pred HHHHHHHHhC---CceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 172 WNHLLYLAES---GRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 172 ~~ll~~l~~~---g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
.+.|+++.++ +.||+++||+++++..+|+|.+++.++
T Consensus 153 ~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 153 TDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999987642 468999999999998899999998753
No 384
>KOG0927|consensus
Probab=99.96 E-value=1.1e-29 Score=250.79 Aligned_cols=202 Identities=22% Similarity=0.267 Sum_probs=164.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.|.+.++|+++.|.++ ..++++++|-|+.++.++++||||||||||||+++|.+.|+.|.|.-.- ..++++.-|+..
T Consensus 387 ~pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~--H~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS--HNKLPRYNQHLA 463 (614)
T ss_pred CCeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc--cccchhhhhhhH
Confidence 6789999999999875 3689999999999999999999999999999999999999999996432 234666666543
Q ss_pred --CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 86 --LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 86 --l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+.-+.++.|++. ..+.. ....+.+..++..+|+.. .+.++++||.|||.||.+|++++..|.+|+|||||+
T Consensus 464 e~ldl~~s~le~~~---~~~~~--~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn 538 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMM---PKFPD--EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN 538 (614)
T ss_pred hhcCcchhHHHHHH---Hhccc--cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence 333456666553 22221 122356777899999963 578899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHH
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVL 218 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l 218 (321)
|||......+.+.|.+. .-++|++|||...+.+ ++++++..+|.+. ..|+....
T Consensus 539 hLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 539 HLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred CCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 99999999999988654 4579999999999987 9999999988764 45665543
No 385
>KOG0927|consensus
Probab=99.96 E-value=5.8e-29 Score=245.57 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=146.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
-+.+.|+++.|.+ ..+++|++|++.+|+-+||+|||||||||+|++|.|-..|..-++.+-- +.++ ...
T Consensus 75 dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~--------ls~e-~~p 143 (614)
T KOG0927|consen 75 DVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYL--------LSRE-IEP 143 (614)
T ss_pred cceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhh--------hccc-CCC
Confidence 4899999999998 7799999999999999999999999999999999999888655543311 0000 000
Q ss_pred CCCCHHHHHH-----------HHH--------------------HHhCCCHHHHHHHHHHHHHHcCC-cc-ccCCCCccC
Q psy106 88 PEFTIDEMIC-----------YYG--------------------LIYGMSLQQIKEKAEYLQALLHL-NH-FKRKCGSLS 134 (321)
Q Consensus 88 ~~ltv~e~l~-----------~~~--------------------~~~~~~~~~~~~~~~~ll~~~~l-~~-~~~~~~~LS 134 (321)
...++.+.+. +.. +.-....+..+.++..++.-++. .. .++++..||
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 0111111111 100 00011112222333333333333 33 578899999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE-EEEe
Q psy106 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI-LLEE 212 (321)
Q Consensus 135 gGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~-i~~~ 212 (321)
||+|.|++|||||..+|++|+|||||++||+.+..-+-+.|.+..+ + ++++++|+-+.+.. |++|+-+++++ +.+.
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecchhhhhhHhhhhheecccceeeec
Confidence 9999999999999999999999999999999999999998876532 1 89999999999987 99999999999 6677
Q ss_pred cChhHHHh
Q psy106 213 SPPKVLLE 220 (321)
Q Consensus 213 g~~~~l~~ 220 (321)
|+.++...
T Consensus 302 Gnydqy~~ 309 (614)
T KOG0927|consen 302 GNYDQYVK 309 (614)
T ss_pred CCHHHHhh
Confidence 88877643
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.4e-29 Score=240.86 Aligned_cols=193 Identities=25% Similarity=0.330 Sum_probs=153.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|+.+.|.... .-+..||++|++||++-|+|.|||||||+++.++|+.+|++|+|.+||++. +-++
T Consensus 322 ~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 322 TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 489999999998742 468999999999999999999999999999999999999999999999864 1234
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc----ccC--CCCccChHHHHHHHHHHHHhcCCC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH----FKR--KCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~~--~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
-+|.|..+|+.+-..| .....+.++..++++.+.+ .|. ..-+||.|||+|+++.-|++-+.+
T Consensus 401 avFsDyhLF~~ll~~e------------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~ 468 (546)
T COG4615 401 AVFSDYHLFDQLLGPE------------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERD 468 (546)
T ss_pred HHhhhHhhhHhhhCCc------------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCC
Confidence 4444444444321111 1111233444445444421 233 346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
++++||=.+--||.-|+.|+..+ -.++++|+||+.+|||-.-...|||++.+++|++++.-
T Consensus 469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999866 44578899999999998888889999999999998753
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.96 E-value=4.2e-28 Score=235.66 Aligned_cols=185 Identities=21% Similarity=0.277 Sum_probs=147.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+++...++|.||+ . .|+-=.=+|..||++|++||||-||||+.++|+|.++|++|. . ..-+++|=||...-.
T Consensus 342 lv~y~~~~k~~g~--F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~----~~~~vSyKPQyI~~~ 413 (591)
T COG1245 342 LVEYPDLKKTYGD--F-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E----EDLKVSYKPQYISPD 413 (591)
T ss_pred eeecchheeecCc--e-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-C----ccceEeecceeecCC
Confidence 3455566666664 1 233334456678899999999999999999999999999998 1 124699999987766
Q ss_pred CCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 88 PEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
.+.||.+.+.-.... ++. . ....++.+-+.++. .++++.+|||||.|||+||.||.+++++++||||++.||.
T Consensus 414 ~~gtV~~~l~~~~~~~~~~--s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFGS--S---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred CCCcHHHHHHHhhhhhccc--c---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 778999977643322 111 1 11234555666665 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
+.+..+.+.|++.. +.++|.+++.||+-.+.. +||+++.+
T Consensus 489 EqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 489 EQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999988 458999999999999988 99998876
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.96 E-value=5.2e-29 Score=229.90 Aligned_cols=186 Identities=14% Similarity=0.112 Sum_probs=125.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC--------cc------c
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI--------TS------K 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g--------~~------~ 74 (321)
|+++|. +.|.+ .. +|...++ +++|+||||||||||+.+|+++..++.|++...+ .. .
T Consensus 4 i~l~nf-~~~~~--~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 4 LELENF-KSYKG--RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEECc-cccCC--Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 677776 66654 21 2333344 9999999999999999999999888777765432 11 1
Q ss_pred CeEE--EEcCCCCC-CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-----------------------ccC
Q psy106 75 KQLG--FMPQQISL-YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-----------------------FKR 128 (321)
Q Consensus 75 ~~ig--~v~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------------------~~~ 128 (321)
..+. |..|++.. .-..++.+....+ ...+. ....+..+++++.+++.. .++
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~-~ingk--~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~ 151 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSY-RINGK--VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFR 151 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEE-EECCE--EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhh
Confidence 2333 33333221 0000111110000 00111 111223345555555531 123
Q ss_pred CCCccChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 129 KCGSLSGGQQRRVSLAITLLHD----PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~----P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
++.+||+|||||++||+|++.+ |+++||||||+|||+..+..+.+.|++++++|.|||++||+.+.++.||++++|
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGV 231 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEE
Confidence 4589999999999999999875 999999999999999999999999999987799999999998877779999888
Q ss_pred eC
Q psy106 205 RK 206 (321)
Q Consensus 205 ~~ 206 (321)
..
T Consensus 232 ~~ 233 (247)
T cd03275 232 YR 233 (247)
T ss_pred Ee
Confidence 64
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=1e-27 Score=242.58 Aligned_cols=186 Identities=27% Similarity=0.352 Sum_probs=153.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
..+|+++|++..-+++ ...+++.||++++||.+-|.||||||||||+|+|+|+.|.-+|+|... ....+-|+||.|.
T Consensus 390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--~~~~~lflpQ~PY 466 (604)
T COG4178 390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--ADSALLFLPQRPY 466 (604)
T ss_pred cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--CCCceEEecCCCC
Confidence 4689999999998876 478999999999999999999999999999999999999999999775 2346899999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc----cc---CCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH----FK---RKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~---~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+... |.+|-+.|+......++ +.+.+.+..++|++ ++ +=-..||+|||||+++||.|+++|++++|||
T Consensus 467 ~p~G-tLre~l~YP~~~~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE 541 (604)
T COG4178 467 LPQG-TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541 (604)
T ss_pred CCCc-cHHHHHhCCCCCCCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec
Confidence 7666 99999987654432333 33445666667643 11 2235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
-|++||+.++..+++++++.. .+.|||-++|....-...++
T Consensus 542 ATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 542 ATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred chhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhh
Confidence 999999999999999997743 58999999998876655444
No 390
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=3e-28 Score=217.32 Aligned_cols=216 Identities=24% Similarity=0.353 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC----ccEEEECCccc------
Q psy106 7 CAIRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN----GGNIHLSITSK------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~--~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~----~G~I~~~g~~~------ 74 (321)
+.+.++|++..+. .+..++++++|+++.+||+-|++|.+|||||-..+.|+|..+-+ ....++++.+.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4678999998773 33367999999999999999999999999999999999987632 22223333221
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHH-------HHHHHhCCCHHHHHHHHHHHHHHcCCcc----ccCCCCccC
Q psy106 75 -------KQLGFMPQQIS--LYPEFTIDEMIC-------YYGLIYGMSLQQIKEKAEYLQALLHLNH----FKRKCGSLS 134 (321)
Q Consensus 75 -------~~ig~v~Q~~~--l~~~ltv~e~l~-------~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LS 134 (321)
+.|+++||+|. +.|.-++...+. |-++.+.. -...++++-+++..+|+.+ ...++.+|-
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~-F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQR-FGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhh-hchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 46899999985 555544433221 11111110 0123466777889999843 357899999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEe
Q psy106 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 135 gGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~ 212 (321)
-||-|+|.||.|++.+|++||.||||+++||..+.+++.++.+++ .+|+||+++|||+..+.. ||++-+|.-|.-+++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999998 469999999999999977 999999999999999
Q ss_pred cChhHHHhhcc
Q psy106 213 SPPKVLLEKYN 223 (321)
Q Consensus 213 g~~~~l~~~~~ 223 (321)
++.+++.+...
T Consensus 241 a~~e~l~~~Ph 251 (330)
T COG4170 241 APSEELVTMPH 251 (330)
T ss_pred cchhHHhcCCC
Confidence 99999887644
No 391
>KOG2355|consensus
Probab=99.94 E-value=3.2e-26 Score=203.61 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=163.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
+.+|+++++.++|... .+++.|+|++++.|.-..++|.||||||||+++|+|---.-.|.|.+.|.+. ..
T Consensus 11 ~~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 4579999999999865 4799999999999999999999999999999999997666668898887653 12
Q ss_pred EEEEcC----------CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHH
Q psy106 77 LGFMPQ----------QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 77 ig~v~Q----------~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~a 146 (321)
..|+-. +..+-.++++.+.+. . ..+... ++-+.+.+.++++ ..-+.+.+|-|||+||.||+.
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mif-g--V~g~dp----~Rre~LI~iLDId-l~WRmHkvSDGqrRRVQicMG 161 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIF-G--VGGDDP----ERREKLIDILDID-LRWRMHKVSDGQRRRVQICMG 161 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHh-h--ccCCCh----hHhhhhhhheecc-ceEEEeeccccchhhhHHHHh
Confidence 344432 223344667765443 1 122222 3445566666665 233567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|++.=++|+|||-|--||..++..+++.+++.++ +|.||+.+||..+-++. .++++.|++|+++..-+.+++.
T Consensus 162 LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 162 LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIK 236 (291)
T ss_pred cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhh
Confidence 9999999999999999999999999999999884 69999999999998887 9999999999999855554443
No 392
>KOG0062|consensus
Probab=99.94 E-value=3e-27 Score=232.39 Aligned_cols=199 Identities=24% Similarity=0.232 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC-eEEEEcCCC-CC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK-QLGFMPQQI-SL 86 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~-~ig~v~Q~~-~l 86 (321)
|.+++.+..||+ +.+|++-++++..|.-|||+||||+|||||||+|+. |.|........ +--+++-.. .+
T Consensus 81 i~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l 152 (582)
T KOG0062|consen 81 IHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVL 152 (582)
T ss_pred eeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhh
Confidence 788899999998 679999999999999999999999999999999996 44432211100 111222111 23
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
..++++.+.+.--..+... ....+....++.-+|... ..++.++||||-|-|++|||||..+||+|+|||||+.||
T Consensus 153 ~~D~~~~dfl~~e~~l~~~--~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAG--LTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hccHHHHHHHHhhhhhhcc--chHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 3344444444322111110 011233333666677653 468889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHHh
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLLE 220 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~~ 220 (321)
..+..-+-+.|..+ +.|+|+||||-+++.. |..|+-+++-++- +-|+.+++.+
T Consensus 231 v~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 231 VVAVAWLENYLQTW---KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred hHHHHHHHHHHhhC---CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999888664 4899999999999987 9999988887763 4577666543
No 393
>KOG0062|consensus
Probab=99.94 E-value=2.8e-26 Score=225.53 Aligned_cols=200 Identities=19% Similarity=0.223 Sum_probs=164.4
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcC
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
+.+.|.+++.++++.|..+....+.++++.++.-+-.+++|+||+||||+++++.|-..|..|.+.+.+ +.+|+|.+|
T Consensus 357 ~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--r~ri~~f~Q 434 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--RLRIKYFAQ 434 (582)
T ss_pred cCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--cceecchhH
Confidence 345688999999999976433689999999999999999999999999999999999999999887653 468999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
...=+-++.|.+.-.+.....|... +.+..-+..+|++. ..+++.+||||||-||++|.+...+|.+|+|||||
T Consensus 435 hhvd~l~~~v~~vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPT 510 (582)
T KOG0062|consen 435 HHVDFLDKNVNAVDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPT 510 (582)
T ss_pred hhhhHHHHHhHHHHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCC
Confidence 8643334455443333333334443 34455677889863 45668999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
+.||..+...+.+.|+.. +-.||++|||.++++. |+.+++.++|++..
T Consensus 511 NhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 511 NHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred ccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999988888765 4569999999999987 99999999999875
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.93 E-value=6.1e-26 Score=203.07 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=111.7
Q ss_pred eeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHH
Q psy106 26 LDKLCMTVQKST-IYSLLGASGCGKTTLLSCIT--------GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 26 L~~isl~i~~Ge-i~~llGpNGaGKSTLl~~l~--------Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
+-++||++.+|+ +++|.||||||||||+|+|+ |...|....+ .++|+.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~--------~~~~~~~~~~~---------- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS--------SLPVFENIFAD---------- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc--------cCcCccEEEEe----------
Confidence 457899999995 89999999999999999998 5444422111 23333332110
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HH
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NH 174 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~l 174 (321)
++.. ..+...+++|+||||++.++++ +.+|+++++|||++|+|+..+..++ .+
T Consensus 79 ------------------------lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 79 ------------------------IGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ------------------------cCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 0111 1345668999999999999988 4899999999999999999999996 47
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
++++++.|.|+|++||+.+..+.||++..|++|++..++
T Consensus 134 l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 134 LEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 788777799999999996555569999999999998763
No 395
>KOG0066|consensus
Probab=99.93 E-value=7.9e-26 Score=218.92 Aligned_cols=191 Identities=22% Similarity=0.298 Sum_probs=154.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.|++-+.++++.|.++ ++.+++++|-|.-..-++|+||||.||||||++|.|-+.|+.|+.+-+. +-+||+.-|..+
T Consensus 584 PPvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh--rL~iG~FdQh~~ 660 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH--RLRIGWFDQHAN 660 (807)
T ss_pred CCeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc--eeeeechhhhhH
Confidence 5789999999999765 5799999999999999999999999999999999999999999987542 246999888753
Q ss_pred --CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-ccc-CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 86 --LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-HFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 86 --l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~-~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+-..-|..|++. +.++++..+. ...+-.+|+. +.+ -++..||||||-||++|-.-+..|++|||||||+
T Consensus 661 E~L~~Eetp~EyLq---r~FNlpyq~A----RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 661 EALNGEETPVEYLQ---RKFNLPYQEA----RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred HhhccccCHHHHHH---HhcCCChHHH----HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 444456666654 4556665433 3456677774 343 4688999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
+||.++...+.+.|.++ .-.|||+|||-..+.. .-.++++++..|
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999876 3469999999998854 235666665443
No 396
>KOG0060|consensus
Probab=99.92 E-value=2.8e-24 Score=213.87 Aligned_cols=193 Identities=23% Similarity=0.290 Sum_probs=154.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-cCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-KKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-~~~ig~v~Q~~ 84 (321)
+.+|++++++..-++....+++|+||+|++|+-+-|.||||||||+|+|+++|+.+..+|++..-... .+.+=|+||.|
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 46899999999887633668899999999999999999999999999999999999999999864332 25589999999
Q ss_pred CCCCCCCHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcC----------Ccc-ccC-CCCccChHHHHHHHHHHHH
Q psy106 85 SLYPEFTIDEMICYYGLI-----YGMSLQQIKEKAEYLQALLH----------LNH-FKR-KCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~-----~~~~~~~~~~~~~~ll~~~~----------l~~-~~~-~~~~LSgGqkQRv~iA~aL 147 (321)
.+-.. |.+|.+.|+... ...+++ .+...++... ++. .+. -...||+|||||+++||-+
T Consensus 511 Ymt~G-TLRdQvIYP~~~~~~~~~~~~d~----~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 511 YMTLG-TLRDQVIYPLKAEDMDSKSASDE----DILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred Ccccc-chhheeeccCccccccccCCCHH----HHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 76555 999998887321 122222 2222333322 221 112 2357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
.++|++-||||-||++|......+.+.+++ .|+|.|-++|.-..-+.-|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999999999999987765 59999999999988887888888874
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=1.7e-25 Score=217.48 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=136.4
Q ss_pred eEEEEeCCCCCceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE-----------CCccc------
Q psy106 13 NAYKRHSSKLPYVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----------SITSK------ 74 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~-----------~g~~~------ 74 (321)
+++.+||.+ -++=-.+ ...+|+++||+||||-||||.+|+|+|.++|+=|+-.- .|...
T Consensus 79 e~vHRYg~N---gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN---GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC---ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 457788753 2333344 35689999999999999999999999999998776531 11110
Q ss_pred -----CeEEEEcCCCCCCCC---CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPE---FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
-++..=||.....|. -+|.|.|.-. ..+-..+++.+.+++.. +++.+++|||||.||+|||.
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~---------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV---------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhh---------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 122222332211111 1444433210 01123567788888876 79999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
|++++++++++|||||-||...+-.....|+++++.+++||++.||+..+.. +|.|.++.
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999999999999889999999999999988 99988876
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=6.4e-24 Score=192.41 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=71.6
Q ss_pred ccCCCCccChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-ceEEEecCChhHHhh-c
Q psy106 126 FKRKCGSLSGGQQRRVSLAITL----LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-G-RTILITTHYIDEAKK-S 198 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL----~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g-~tIil~tH~l~~~~~-~ 198 (321)
.+..+.+||+|||||+.+|+++ +.+|+++|+||||+|||+..+..+++.+.+++++ | .|+|++||++.+... |
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 3567899999999999877554 5899999999999999999999999999998765 5 589999999987643 6
Q ss_pred C--EEEEEeCCE
Q psy106 199 H--MIGLMRKGI 208 (321)
Q Consensus 199 d--rv~il~~G~ 208 (321)
| ++++|++|+
T Consensus 200 ~~~~v~~l~~g~ 211 (213)
T cd03277 200 EKMTVLCVYNGP 211 (213)
T ss_pred CceEEEEEecCc
Confidence 5 889999886
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.89 E-value=1e-22 Score=179.67 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=69.5
Q ss_pred cChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 133 LSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.+.+++++|.|+|++||+++.+..||+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999987778999999999988877999998875
No 400
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.89 E-value=3.4e-23 Score=179.56 Aligned_cols=139 Identities=22% Similarity=0.236 Sum_probs=104.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEE-EcCCCCCCCCCCHHHHHHHHHHHhCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGF-MPQQISLYPEFTIDEMICYYGLIYGM 105 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~-v~Q~~~l~~~ltv~e~l~~~~~~~~~ 105 (321)
...++.+.++.+..|+|||||||||+++.+....-..+|.+..... .+.|+ +|+....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~------------------ 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG--VKAGCIVAAVSAEL------------------ 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc--ccCCCcceeeEEEE------------------
Confidence 3445566666799999999999999999987665555444432110 01111 11111100
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy106 106 SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 106 ~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
+ ....+||+||+||+++|++|+. +|+++|+|||++|+|+..+..+.+.+.++.++
T Consensus 72 -----------------i----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 72 -----------------I----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred -----------------e----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 0 0012299999999999999987 78999999999999999999999999888655
Q ss_pred CceEEEecCChhHHhhcCEEEEEeC
Q psy106 182 GRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 182 g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
|.++|++||+.+.++.+|+++.|+.
T Consensus 131 ~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 131 GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 8999999999999988999998864
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.89 E-value=3.2e-23 Score=185.99 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=105.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.+++|++|+. |++++|+||||||||||+|+|+|.... ...|.....-.+++|...+|+.+|+.||+.+....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~ 86 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISY 86 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecCccCcccceEEEeccchhccccccCh
Confidence 45778877665 799999999999999999999986531 11232221124677866789999999998764322
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NHLLYLAES 181 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~ll~~l~~~ 181 (321)
+ ..+. +++.++++.++. .+|+++|+||||+|+|+..+..+. .+++++.+.
T Consensus 87 ~---~~e~-~~~~~iL~~~~~-------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~ 137 (199)
T cd03283 87 F---YAEL-RRLKEIVEKAKK-------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK 137 (199)
T ss_pred H---HHHH-HHHHHHHHhccC-------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC
Confidence 1 2222 345555555431 799999999999999999998765 578888777
Q ss_pred CceEEEecCChhHHhh---cCEEEEE
Q psy106 182 GRTILITTHYIDEAKK---SHMIGLM 204 (321)
Q Consensus 182 g~tIil~tH~l~~~~~---~drv~il 204 (321)
|.|+|++||+++++.. .+++-.+
T Consensus 138 ~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 138 NTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 9999999999999854 3455443
No 402
>KOG0065|consensus
Probab=99.88 E-value=1.4e-22 Score=216.80 Aligned_cols=198 Identities=26% Similarity=0.370 Sum_probs=168.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CccEEEECCccc------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL---NGGNIHLSITSK------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p---~~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~ 93 (321)
..+|+|+|.-+++|+.+.++||.|||||||+++++|-..- ..|+|.++|.+. +.++|.+|+..-++.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4699999999999999999999999999999999987532 256999998763 5699999999999999999
Q ss_pred HHHHHHHHHhCC-------CHHHHH-HHHHHHHHHcCCcc-c-----cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 94 EMICYYGLIYGM-------SLQQIK-EKAEYLQALLHLNH-F-----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 94 e~l~~~~~~~~~-------~~~~~~-~~~~~ll~~~~l~~-~-----~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
|.+.|.++..+. .+.+.. ...+.+++.+|+++ . |...+-.|||||+||++|-+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 999998876532 111111 14568899999865 3 455678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhH-H-hhcCEEEEEeCCEEEEecChhHHHh
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDE-A-KKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~-~-~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|.|||..+.-++.+.++++++ -+.|.+++-|.... + +..|.|++|.+|++++.|+.++++.
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999985 58898888887764 3 4599999999999999999999875
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=9.3e-22 Score=218.73 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcC---CCEEEEeCCCCCC
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHD---PELLILDEPTSGI 163 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~---P~lllLDEPtsgL 163 (321)
+|||.|.+.|+.. .+.+.+ .-..+..+||.. +.++..+|||||.||+-||..|..+ +.+++|||||+||
T Consensus 1660 ~mtv~ea~~~F~~-----~~~i~~-~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1660 QTPIEEVAETFPF-----LKKIQK-PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred cCCHHHHHHHhhc-----cHHHHH-HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 3556665555421 122223 345667788875 6899999999999999999999876 7999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
++...+.+++.+.+|.+.|.|||++.||++.+..||+++=| +.|+|++.|+|+++.+.
T Consensus 1734 h~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1734 DNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 99999999999999999999999999999999999999988 45899999999999753
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.88 E-value=6.8e-23 Score=186.82 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=112.5
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEE-EEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG-FMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig-~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+.+|++++..++++++|.||||+||||++++++=. .-..++| |+|.+...++ .
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------------~~la~~g~~vpa~~~~~~---~--------- 72 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------------VLMAQIGCFVPCDSADIP---I--------- 72 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------------HHHHHhCCCcCcccEEEe---c---------
Confidence 4689999999999999999999999999999999811 1113344 5555432211 0
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEP---TSGIDPVIAEEIWNHLL 176 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEP---tsgLD~~~~~~i~~ll~ 176 (321)
.+.++..+++. +.....+|.||+|++.+++++ +.+|+++||||| |+++|+.+... ..++
T Consensus 73 ------------~~~il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~ 136 (222)
T cd03285 73 ------------VDCILARVGAS--DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAE 136 (222)
T ss_pred ------------cceeEeeeccc--cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHH
Confidence 11123334433 233578999999999999999 899999999999 99999998853 3444
Q ss_pred HHHh-CCceEEEecCChhHHh-hcCEEEEEeCCEEEEecC
Q psy106 177 YLAE-SGRTILITTHYIDEAK-KSHMIGLMRKGILLEESP 214 (321)
Q Consensus 177 ~l~~-~g~tIil~tH~l~~~~-~~drv~il~~G~i~~~g~ 214 (321)
.+.+ .|.++|++||+ .++. .||++..+++|++...++
T Consensus 137 ~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 137 YIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 5543 58999999996 5554 499999999999987764
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.6e-22 Score=186.59 Aligned_cols=77 Identities=27% Similarity=0.321 Sum_probs=69.3
Q ss_pred CccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 131 GSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
.+|||||+||+++|++++. +|+++++||||++||+..+..+.+.++++.+ +.|+|++||+++....||++++|.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEEEEEE
Confidence 4599999999999997654 9999999999999999999999999998864 7899999999997666999999988
Q ss_pred CE
Q psy106 207 GI 208 (321)
Q Consensus 207 G~ 208 (321)
|.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 64
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.87 E-value=1.1e-22 Score=182.18 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=108.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~ 105 (321)
-..++++.+|++++|+||||||||||+++|++.. .+..|.... . ...+++|..|.. ..+...
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~-~~~~i~~~dqi~---~~~~~~------------ 82 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A-ESASIPLVDRIF---TRIGAE------------ 82 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c-cccccCCcCEEE---EEecCc------------
Confidence 3446677799999999999999999999999543 223332111 0 011222221110 000000
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCce
Q psy106 106 SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN-HLLYLAESGRT 184 (321)
Q Consensus 106 ~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-ll~~l~~~g~t 184 (321)
+......+++|.+++| +..+.+++.+|+++|+||||+|+||..+..+.. +++.+.+.+.+
T Consensus 83 ------------------d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 83 ------------------DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred ------------------ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 0123345677877776 666678889999999999999999998888755 56667677899
Q ss_pred EEEecCChhHHhhcCEEEEEeCCEEEEecChhHH
Q psy106 185 ILITTHYIDEAKKSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 185 Iil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l 218 (321)
+|++||+.+.++.|+++..+++|++...++.+++
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 9999999988888889999999999888765444
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.87 E-value=4.2e-21 Score=197.27 Aligned_cols=126 Identities=26% Similarity=0.420 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP---ELLILDEPTSGI 163 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P---~lllLDEPtsgL 163 (321)
+|||.|-..|+... +.+.++.+ .+..+||.. +.++..+|||||.|||-||.-|.... -++||||||+||
T Consensus 783 ~MTveEA~~FF~~~-----p~I~rkLq-tL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 783 DMTVEEALEFFEAI-----PKIARKLQ-TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred hccHHHHHHHHhcc-----hHHHHHHH-HHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 35666655554321 22333343 455678875 68999999999999999999999988 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
-+.-.+++++.|.+|..+|-|||++.|+|+.+..||+|+=| ..|+|++.|+|+++.+
T Consensus 857 H~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 857 HFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999999999999987 4689999999999976
No 408
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=188.53 Aligned_cols=178 Identities=28% Similarity=0.407 Sum_probs=141.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--------CCCCccEEEECCcccCeEEEEcCCCC-CCCCCCHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--------NVLNGGNIHLSITSKKQLGFMPQQIS-LYPEFTIDE 94 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~~ig~v~Q~~~-l~~~ltv~e 94 (321)
.+++|+||++++|++++++|+|||||||++++|+|. ++|++|.|.+--.. --+.+|.+.- -|..-|+.|
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--VSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--hhhccCcccccccCchhHHH
Confidence 489999999999999999999999999999999975 57999999874322 2345665432 133456666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc---ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 95 MICYYGLIYGMSLQQIKEKAEYLQALLHLNH---FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
.+.- ..+ + -..+.+++...++.+ ..++.++||-|||.|+.||++++..|.+++.||-.|.||+.+...+
T Consensus 475 hl~s---~tG----D-~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rV 546 (593)
T COG2401 475 HLRS---KTG----D-LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRV 546 (593)
T ss_pred HHhh---ccC----c-hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHH
Confidence 5431 111 1 123445777778754 3678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCceEEEecCChhHHhh--cCEEEEEeCCEEEE
Q psy106 172 WNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLE 211 (321)
Q Consensus 172 ~~ll~~l~-~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~ 211 (321)
..-|.+++ +.|.|.+++||+.+.... -|+++.+.-|+...
T Consensus 547 ArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 547 ARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 99999998 569999999999999864 69998887776543
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=2.8e-21 Score=206.50 Aligned_cols=130 Identities=25% Similarity=0.445 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHhCCCHH----------HHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEE
Q psy106 89 EFTIDEMICYYGLIYGMSLQ----------QIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELL 154 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~ll 154 (321)
.++|.|.+.|.-.+ +.+.. +..++++ +++.+++.. +++++.+|||||||||+||+||+.+| +++
T Consensus 436 ~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ll 513 (943)
T PRK00349 436 ELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 513 (943)
T ss_pred cCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 56788877774332 22221 2334443 567778864 58999999999999999999999997 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
||||||+||||..+..++++|++++++|.|||++||+++++..||++++| ++|++++.|+++++..
T Consensus 514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99999999999999999999999988899999999999998779999999 9999999999998754
No 410
>KOG0064|consensus
Probab=99.85 E-value=4.8e-21 Score=189.12 Aligned_cols=178 Identities=24% Similarity=0.362 Sum_probs=135.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
|.++|+-.--+.+ ..++..+||+|++|-.+.|+||||||||+|+|+|.|+.|...|...+. ...++-|+||.|.+-
T Consensus 482 I~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P--~~~~mFYIPQRPYms- 557 (728)
T KOG0064|consen 482 IILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP--RPNNIFYIPQRPYMS- 557 (728)
T ss_pred eEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC--CCcceEeccCCCccC-
Confidence 7888887766655 458899999999999999999999999999999999999988877653 235699999998654
Q ss_pred CCCHHHHHHHHH-----HHhCCCHHHHHHHHHHHHHHcCCcc----------ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 89 EFTIDEMICYYG-----LIYGMSLQQIKEKAEYLQALLHLNH----------FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 89 ~ltv~e~l~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~----------~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
.-|.+|.+.|+- ...+..+++..+ ++..+.+++ ...--..||||+|||+++||.+-++|+.
T Consensus 558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~----iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky 633 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEA----ILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY 633 (728)
T ss_pred cCcccceeecCCcHHHHHhcCCCHHHHHH----HHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch
Confidence 335566554431 122444433222 223222221 1111246999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
-+|||-||+..+.....+++..+. .|.+.+-+||.+..-..
T Consensus 634 alLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 634 ALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY 674 (728)
T ss_pred hhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence 999999999999999999887744 59999999999988654
No 411
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.85 E-value=2.2e-21 Score=174.76 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=106.0
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
..+.+|++|++++|++++|+||||+||||++++++++. ...++|+-. |..+..+++.|++..
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------~la~~G~~v--pa~~~~l~~~d~I~~---- 77 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------IMAQIGCFV--PAEYATLPIFNRLLS---- 77 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------HHHHcCCCc--chhhcCccChhheeE----
Confidence 56899999999999999999999999999999999874 112333211 344455566665521
Q ss_pred hCCCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh
Q psy106 103 YGMSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAE 180 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~ 180 (321)
.++.. ..++..+++|+||+|+ ..+.+++.+|+++|+|||++|+||.....+ ++.+..+.+
T Consensus 78 -----------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~ 139 (204)
T cd03282 78 -----------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK 139 (204)
T ss_pred -----------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 11222 1346678999999975 566678999999999999999999776654 556777777
Q ss_pred CCceEEEecCChhHHhh
Q psy106 181 SGRTILITTHYIDEAKK 197 (321)
Q Consensus 181 ~g~tIil~tH~l~~~~~ 197 (321)
.|.++|++||+.+.++.
T Consensus 140 ~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 140 KESTVFFATHFRDIAAI 156 (204)
T ss_pred cCCEEEEECChHHHHHH
Confidence 79999999999999875
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=1e-20 Score=201.90 Aligned_cols=130 Identities=25% Similarity=0.423 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEE
Q psy106 89 EFTIDEMICYYGLIYGMSL----------QQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELL 154 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~ll 154 (321)
.||+.|.+.|...+. ... ++..++.+ .+..+++.. +++++.+|||||+|||.||+||+.+| +++
T Consensus 434 ~~~v~~~~~~~~~l~-~~~~~~~ia~~i~~~i~~rl~-~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 434 ELSIREAHEFFNQLD-LTPEEKKIAEEILKEIKERLG-FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred cCCHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHH-hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 567777776654431 111 11222332 345567764 58899999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
||||||+||||..+..++++|++++++|.|||+++||++++..||++++| ++|+|++.|+++++..
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99999999999999999999999988899999999999998789999999 9999999999998753
No 413
>KOG0066|consensus
Probab=99.84 E-value=6.3e-22 Score=192.00 Aligned_cols=203 Identities=25% Similarity=0.255 Sum_probs=143.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--C-CCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--Q-NVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G--l-~~p~~G~I~~~g~~~---------- 74 (321)
-|+++|.+.+-.+ +..+.|.|+.|-.|.-||++||||-||||||+.|+. + ++|. =.+.++....
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn-IDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN-IDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC-CceEeeeeeeeecCcHHHHH
Confidence 3889999988877 568999999999999999999999999999999974 2 4443 2343322110
Q ss_pred ------CeEEEEcCCCC-----CCCCCCHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHH
Q psy106 75 ------KQLGFMPQQIS-----LYPEFTIDEMICYY-GLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 ------~~ig~v~Q~~~-----l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQR 140 (321)
++..++-.+.. --.+.|+.|-+.-. ..+........+.++..++.-+|.+. .+++...+|||-|-|
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 11111111100 01233444443211 11211112223345555666666653 478889999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE-ecChh
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE-ESPPK 216 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~-~g~~~ 216 (321)
|+|||||..+|-+|.|||||+.||......+-+.|+-+ .+|.+++|||-.++.. |+.|+.+++-++-+ -|.-.
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW---kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh---hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHH
Confidence 99999999999999999999999999888888887665 4799999999999987 99999999988754 35443
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.2e-19 Score=166.87 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=65.7
Q ss_pred CCCccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-c
Q psy106 129 KCGSLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-S 198 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~ 198 (321)
....+|+||||++++|++|+ .+|+++++||||++||+..+..+++.+.++. .+++++|+.+.+.. |
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchh
Confidence 35568999999999999985 7999999999999999999999999997653 46777777777655 6
Q ss_pred ---CEEEEEeCCEE
Q psy106 199 ---HMIGLMRKGIL 209 (321)
Q Consensus 199 ---drv~il~~G~i 209 (321)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.80 E-value=1.4e-19 Score=164.43 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=106.7
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+.+|++|+.++ ++++|+|||||||||++|+++++.-. ..|.. +... ..++++++| +|+.+++.|++...
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-vp~~-~~~i~~~~~---i~~~~~~~~~ls~g-- 89 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF-VPAS-KAEIGVVDR---IFTRIGASDDLAGG-- 89 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe-eccc-cceecceee---EeccCCchhhhccC--
Confidence 4588999999988 99999999999999999999865322 22221 1111 145666654 45666666665422
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEP---TSGIDPVIAEEIWNHLL 176 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEP---tsgLD~~~~~~i~~ll~ 176 (321)
.|.=+..+..+++++ +.+|+++||||| |+++|+... ...++.
T Consensus 90 -------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~ 136 (216)
T cd03284 90 -------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVE 136 (216)
T ss_pred -------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHH
Confidence 122223333344333 579999999999 888887542 344555
Q ss_pred HHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 177 YLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 177 ~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
.+.+. +.|+|++||+.+..+.+|++..+++|++...++.+++.
T Consensus 137 ~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 137 YLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 55555 89999999998666668887777889988877776654
No 416
>KOG0063|consensus
Probab=99.79 E-value=8.6e-19 Score=169.88 Aligned_cols=180 Identities=20% Similarity=0.287 Sum_probs=139.4
Q ss_pred EEeCCCCCceeeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEEECCcccCeEEEEcCCCCCCCC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKST-----IYSLLGASGCGKTTLLSCITGQNVLNGG-NIHLSITSKKQLGFMPQQISLYPE 89 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Ge-----i~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~ig~v~Q~~~l~~~ 89 (321)
++|++- +.-+-+..|.|+.|+ ++..+|.||.||||++++++|.++|+.| ++ +.-.++|=||...--..
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~-----p~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI-----PVLNVSYKPQKISPKRE 416 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc-----cccceeccccccCcccc
Confidence 346553 346788999999885 6899999999999999999999999876 22 22458999998765555
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
-||++.+.--.+-... .. ..+....+-+.+++ .++.+.+||||++|||++|.+|-..+++++.|||.+-||.+.|
T Consensus 417 ~tvR~ll~~kIr~ay~-~p---qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQR 492 (592)
T KOG0063|consen 417 GTVRQLLHTKIRDAYM-HP---QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQR 492 (592)
T ss_pred chHHHHHHHHhHhhhc-CH---HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHH
Confidence 6888765421111111 11 22333444444544 6888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 169 EEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 169 ~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
..--..+++.- +.++|-.++.||+-.+.+ +||+++.+
T Consensus 493 i~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 493 IIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 88888888865 668999999999998887 99998775
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.75 E-value=1.2e-18 Score=154.25 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 116 (321)
++.|.||||+||||++|.++ ..+....|..... . ..+++++.+-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a-~-~~~~~~~d~i--------------------------------- 45 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA-E-SAELPVFDRI--------------------------------- 45 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee-h-heEecccceE---------------------------------
Confidence 36799999999999999997 3333333322110 0 0112221110
Q ss_pred HHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CceEEEecCChh
Q psy106 117 LQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NHLLYLAES-GRTILITTHYID 193 (321)
Q Consensus 117 ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~ll~~l~~~-g~tIil~tH~l~ 193 (321)
...++.+ ..++..+++|+|++|...+++ .+.+|+++|+|||++|+||.....+. .+++.+.++ +.++|++||+.+
T Consensus 46 -l~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 46 -FTRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred -EEEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 1112221 135667899999887444433 23599999999999999999877764 566677664 899999999997
Q ss_pred HHhhcCEEEEEeCCEEEE
Q psy106 194 EAKKSHMIGLMRKGILLE 211 (321)
Q Consensus 194 ~~~~~drv~il~~G~i~~ 211 (321)
....||+---++++++..
T Consensus 124 l~~~~~~~~~v~~~~~~~ 141 (185)
T smart00534 124 LTKLADEHPGVRNLHMSA 141 (185)
T ss_pred HHHHhhcCccceEEEEEE
Confidence 555577544445555443
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.74 E-value=8.6e-18 Score=157.49 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC----------eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK----------QLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~----------~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~ 106 (321)
.-++|+||||||||||+++|+|+++|++|++.++|++.. .++++||.. +.+.++|.+|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~---------- 180 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGC---------- 180 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccc----------
Confidence 568999999999999999999999999999999886531 123333322 12222332221
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEE
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIi 186 (321)
.|.....+.+.+++|+++++|||++ .+.+..++..+ +.|+|+|
T Consensus 181 ------------------------------~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI 223 (270)
T TIGR02858 181 ------------------------------PKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSII 223 (270)
T ss_pred ------------------------------hHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEE
Confidence 1111113333447999999999974 33344555554 4699999
Q ss_pred EecCChhH--H-----------hh-cCEEEEEeCCEEEEecChhHHH
Q psy106 187 ITTHYIDE--A-----------KK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 187 l~tH~l~~--~-----------~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++||+.+. + .. +||+++|++|+ ..|+++++.
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99997655 4 13 89999999887 667666543
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.72 E-value=7.2e-17 Score=146.30 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=93.5
Q ss_pred eeeeeeEEEeCC--cEEEEEcCCCCcHHHHHHHHH--cCCCCCccEEEECCcccCeEEEEcCCCCC-CCCCCHHHHHHHH
Q psy106 25 VLDKLCMTVQKS--TIYSLLGASGCGKTTLLSCIT--GQNVLNGGNIHLSITSKKQLGFMPQQISL-YPEFTIDEMICYY 99 (321)
Q Consensus 25 iL~~isl~i~~G--ei~~llGpNGaGKSTLl~~l~--Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l-~~~ltv~e~l~~~ 99 (321)
+=+|+++ ..+ .+++|.||||+|||||+|.++ +++ +..|...... ..+++|..|...- ...-++.+++
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~~~~~~~d~i~~~l~~~~si~~~~--- 89 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--SATIGLVDKIFTRMSSRESVSSGQ--- 89 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--CcEEeeeeeeeeeeCCccChhhcc---
Confidence 4455554 444 799999999999999999998 434 5667665432 2457887775421 1111221111
Q ss_pred HHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHH
Q psy106 100 GLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA-EEIWNHLLYL 178 (321)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~-~~i~~ll~~l 178 (321)
+++ .-+-||+++|++++.+|+++|+|||++|+|+... ..+...++++
T Consensus 90 -------------------------------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l 137 (213)
T cd03281 90 -------------------------------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHL 137 (213)
T ss_pred -------------------------------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHH
Confidence 111 2356889999999999999999999999999764 4446788888
Q ss_pred HhC---CceEEEecCChhHHhh
Q psy106 179 AES---GRTILITTHYIDEAKK 197 (321)
Q Consensus 179 ~~~---g~tIil~tH~l~~~~~ 197 (321)
.+. +.++|++||+.+.++.
T Consensus 138 ~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 138 LKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HhcCCCCcEEEEEcChHHHHHh
Confidence 654 3589999999999865
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.70 E-value=3.9e-17 Score=172.38 Aligned_cols=133 Identities=20% Similarity=0.302 Sum_probs=97.1
Q ss_pred eeEEEeCC-cEEEEEcCCCCcHHHHHHHHHcC-CCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC
Q psy106 29 LCMTVQKS-TIYSLLGASGCGKTTLLSCITGQ-NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106 (321)
Q Consensus 29 isl~i~~G-ei~~llGpNGaGKSTLl~~l~Gl-~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~ 106 (321)
+|+++..+ ++++|.||||+|||||||+++|. +.+..|. ++|..... .+...+.+. ....
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------~Vpa~~~~--~~~~~d~i~-----~~i~ 374 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------PIPANEHS--EIPYFEEIF-----ADIG 374 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------CccCCccc--cccchhhee-----eecC
Confidence 78889888 99999999999999999999987 3444441 34443210 011111110 0011
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCceE
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAESGRTI 185 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~~g~tI 185 (321)
.. + ......+++|+||++++.+++++ .+|.++|+|||++|+||.....+ +.++..+.+.|.++
T Consensus 375 ~~---~------------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~v 438 (771)
T TIGR01069 375 DE---Q------------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQV 438 (771)
T ss_pred hH---h------------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 10 0 02245678999999999998877 89999999999999999999998 56778887789999
Q ss_pred EEecCChhHHh
Q psy106 186 LITTHYIDEAK 196 (321)
Q Consensus 186 il~tH~l~~~~ 196 (321)
|++||+.+...
T Consensus 439 iitTH~~eL~~ 449 (771)
T TIGR01069 439 LITTHYKELKA 449 (771)
T ss_pred EEECChHHHHH
Confidence 99999988754
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.66 E-value=6.1e-15 Score=143.63 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=67.5
Q ss_pred CCccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-c-
Q psy106 130 CGSLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-S- 198 (321)
Q Consensus 130 ~~~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~- 198 (321)
...+|.||||++++|++|+ .+|++++||||+++||+..+..+++.+.++ +..++++||+.+.+.. +
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhc
Confidence 4689999999999999996 799999999999999999999999988654 4579999999887754 3
Q ss_pred -CEEEEEeCCEE
Q psy106 199 -HMIGLMRKGIL 209 (321)
Q Consensus 199 -drv~il~~G~i 209 (321)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.62 E-value=3.2e-16 Score=141.41 Aligned_cols=73 Identities=27% Similarity=0.329 Sum_probs=57.3
Q ss_pred CccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 131 GSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
..||||||.+++||.-|+ .++++++||||.++||+..+..+.++|+++.+ ..-+|++||+...++.||+.+.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 399999999999996653 47899999999999999999999999998864 47799999999999989876554
No 423
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.60 E-value=8.6e-15 Score=133.64 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=93.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc-CCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-QNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+.+|++|++.+|++++|.||||+||||+++++++ .+.++.|...... . .+++|..|- +-.+...|.+.-
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~-~~~~~~~~i---~~~~~~~d~~~~--- 89 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S-ATLSIFDSV---LTRMGASDSIQH--- 89 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c-eEEeccceE---EEEecCcccccc---
Confidence 468999999999999999999999999999999999 6778888765432 1 234443331 111111111110
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~ 180 (321)
..++++. +-++++-+..-+.+|.++|+|||.+|.|+.....+ +.++..+.+
T Consensus 90 ---------------------------~~StF~~-e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~ 141 (222)
T cd03287 90 ---------------------------GMSTFMV-ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE 141 (222)
T ss_pred ---------------------------ccchHHH-HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh
Confidence 0011111 11122222223568999999999999997776664 567777776
Q ss_pred C-CceEEEecCChhHHhh
Q psy106 181 S-GRTILITTHYIDEAKK 197 (321)
Q Consensus 181 ~-g~tIil~tH~l~~~~~ 197 (321)
. +.++|++||+.+.++.
T Consensus 142 ~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 142 EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred ccCCeEEEEcccHHHHHH
Confidence 5 8899999999998653
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.59 E-value=1.5e-15 Score=160.62 Aligned_cols=145 Identities=20% Similarity=0.246 Sum_probs=99.0
Q ss_pred eEEEe-CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEE-EEcCCCCCCCCCCHHHHHHHHHHHhCCCH
Q psy106 30 CMTVQ-KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG-FMPQQISLYPEFTIDEMICYYGLIYGMSL 107 (321)
Q Consensus 30 sl~i~-~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~ 107 (321)
++++. .+.++.|.|||++||||+||.++...- ..++| |||-... ..+++.+++. .
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~------------maq~G~~vpa~~~--~~i~~~~~i~--~------- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL------------MAKSGLPIPANEP--SEIPVFKEIF--A------- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH------------HHHhCCCcccCCC--ccccccceEE--E-------
Confidence 45554 457899999999999999999963210 01222 3443310 0112222211 0
Q ss_pred HHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceE
Q psy106 108 QQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN-HLLYLAESGRTI 185 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-ll~~l~~~g~tI 185 (321)
..+.. ...+..+++|+||+|++.|++++ .+|.++|+|||++|+||.....+.. ++..+.+.|.++
T Consensus 377 ------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~v 443 (782)
T PRK00409 377 ------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKI 443 (782)
T ss_pred ------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 01111 13457789999999999999998 8999999999999999999988865 666777779999
Q ss_pred EEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 186 LITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 186 il~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
|++||+.+.+.. +++..++ ++.+..
T Consensus 444 IitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 444 IATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred EEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 999999988876 6655443 345444
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.58 E-value=1.5e-15 Score=136.62 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPT-----SGIDPVIAEEIWNHLLYLAE 180 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPt-----sgLD~~~~~~i~~ll~~l~~ 180 (321)
-|++++.||++++.+|+++++|||| +||||..++.+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999863
No 426
>KOG0063|consensus
Probab=99.57 E-value=5.9e-15 Score=143.47 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=119.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-CeEEEE--------cCCCCCCCCC---CHHHHHH-HHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-KQLGFM--------PQQISLYPEF---TIDEMIC-YYG 100 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-~~ig~v--------~Q~~~l~~~l---tv~e~l~-~~~ 100 (321)
.+|++.|++|.||-||||-+++++|-.+|.-|.-.. +.+. .-++|. |+.+. ..++ .=-+++. ++.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~il~~frgselq~yftk~l-e~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEILTYFRGSELQNYFTKIL-EDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhc-cccccCcCChHHHHHHHH
Confidence 489999999999999999999999999998775421 1110 011111 11100 0000 0001111 111
Q ss_pred HHhC-----CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy106 101 LIYG-----MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174 (321)
Q Consensus 101 ~~~~-----~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l 174 (321)
...+ +.....++...++.+...|+. .++-+.+||||+-||.+||.+.+++.++.++|||.+.||...+..-...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 0000 001111122344555555654 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 175 LLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
|+.+...+.-||++.||++...+ .|-+.++..
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 99998888899999999999988 899988864
No 427
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.56 E-value=4.5e-14 Score=129.44 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=100.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHH-HHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTL-LSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+.++++++.++++ +++|+++.|.|||||||||| +++++++.++. .++.|+..+
T Consensus 8 ~~~~~ld~~l~gg-----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-----------~~~~yi~~e---- 61 (230)
T PRK08533 8 LSRDELHKRLGGG-----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNG-----------YSVSYVSTQ---- 61 (230)
T ss_pred EEEeeeehhhCCC-----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-----------CcEEEEeCC----
Confidence 5677777777652 78999999999999999999 68889876542 224455422
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGI 163 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgL 163 (321)
.+..+.+..... .+...+ + ....-.+...+-. ..+|+++.++-.+++.+-. +|+++++||||+++
T Consensus 62 --~~~~~~~~~~~~-~g~~~~---~----~~~~~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 62 --LTTTEFIKQMMS-LGYDIN---K----KLISGKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred --CCHHHHHHHHHH-hCCchH---H----HhhcCcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 244455443322 222111 1 1111111111212 2467776666555544433 69999999999999
Q ss_pred ----CHHHHHHHHHHHHHHHhCCceEEEecCChhHH--------hh-cCEEEEEe
Q psy106 164 ----DPVIAEEIWNHLLYLAESGRTILITTHYIDEA--------KK-SHMIGLMR 205 (321)
Q Consensus 164 ----D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~--------~~-~drv~il~ 205 (321)
|+..++++++.++.++++|.|+++ ||+.... +. ||-++.|+
T Consensus 131 ~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 131 SNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 888889999999999877887666 5554432 22 56566555
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.55 E-value=1.3e-14 Score=149.02 Aligned_cols=77 Identities=29% Similarity=0.299 Sum_probs=71.5
Q ss_pred CccChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 131 GSLSGGQQRRVSLAITLLHD----PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~~----P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
..|||||+||++||++++.. |+++||||||+|||+..+..+.+.|+++.+ +.|||++||++..+..||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 47899999999999999985 699999999999999999999999999874 8999999999998877999999998
Q ss_pred CE
Q psy106 207 GI 208 (321)
Q Consensus 207 G~ 208 (321)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=1.6e-14 Score=157.60 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=76.6
Q ss_pred ccCCCCccChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 126 FKRKCGSLSGGQQRRVSLAITLLH----------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL~~----------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.++++.+|||||++||+||+||+. +|++||+||||+|||+.+...+++.|.++++.|++|+++||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 357899999999999999999986 8999999999999999999999999999987899999999999999
Q ss_pred hh-cCEEEEEeCC
Q psy106 196 KK-SHMIGLMRKG 207 (321)
Q Consensus 196 ~~-~drv~il~~G 207 (321)
.. ||+|.|++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 87 9999999754
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.54 E-value=1.3e-14 Score=148.03 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=71.1
Q ss_pred CCCccChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 129 KCGSLSGGQQRRVSLAITLL----------HDPELLILDEPT-SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~----------~~P~lllLDEPt-sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++.+||||||||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ +|.|||++||+.+....
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQK 542 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchhh
Confidence 56899999999999999988 599999999998 789999999999999988 58999999999877777
Q ss_pred cCEEEEEeC-CEE
Q psy106 198 SHMIGLMRK-GIL 209 (321)
Q Consensus 198 ~drv~il~~-G~i 209 (321)
||++++|.+ |+.
T Consensus 543 ~d~~~~l~~~~~~ 555 (562)
T PHA02562 543 FDRHLKMEKVGRF 555 (562)
T ss_pred hhcEEEEEEECCe
Confidence 999999986 544
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.52 E-value=7.2e-14 Score=129.64 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=103.9
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE--E--CCccc----------CeEEEEcCCCCCCCCCCHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH--L--SITSK----------KQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~--~--~g~~~----------~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
=+.+.+|+.++|+||+|+|||||++.+++......+++. + -+... ..+-++.+ ... +....
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~-~~~----~~~~~ 84 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST-FDE----PPERH 84 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec-CCC----CHHHH
Confidence 358899999999999999999999999998876533222 1 11110 11111111 110 11111
Q ss_pred HHHH-------HHH--hCCC----HHHHHHHHHHHHHHcCCccccCCCCccChHH--------HHHHHHHHHHhcCCCEE
Q psy106 96 ICYY-------GLI--YGMS----LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ--------QRRVSLAITLLHDPELL 154 (321)
Q Consensus 96 l~~~-------~~~--~~~~----~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq--------kQRv~iA~aL~~~P~ll 154 (321)
.... ... .+.. -++..+..+..-+ .. ......+|||+ +||+++||++..++++.
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~e-v~----~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNT-VV----PPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhh-cc----ccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 1100 000 0100 0011111111111 11 12234579999 99999999999999999
Q ss_pred EEeCCCCCCCHHHHHH-HHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 155 ILDEPTSGIDPVIAEE-IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~-i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+| ||+.+|+.+... ++ +.+++..+.|.|+.||.+.....+|.|.+|+.|++
T Consensus 160 ~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 160 II--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred Ee--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence 99 999999654443 44 45555467899999999999999999999999987
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.51 E-value=1.1e-13 Score=137.74 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=111.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------------CeEEEEcCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------------KQLGFMPQQIS 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------------~~ig~v~Q~~~ 85 (321)
..+++++ |++.+|+.++|+|+||+|||||+++|+|+.+|+.|.|.+.|++. +.|+++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4589999 99999999999999999999999999999999999998854321 35667764321
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccCh-HHHHHHHHHHHHhcCCCEEEEeCC--CCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG-GQQRRVSLAITLLHDPELLILDEP--TSG 162 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSg-GqkQRv~iA~aL~~~P~lllLDEP--tsg 162 (321)
+..+-.. +.. -.-..++.+.+. +.+-+ --..+++. -|-+| .++ +.+.|| |+|
T Consensus 225 -----~~~~r~~--~~~------~a~~iAEyfr~~-g~~Vl-l~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G 279 (438)
T PRK07721 225 -----PALMRIK--GAY------TATAIAEYFRDQ-GLNVM-LMMDSVTRVAMAQR-EIG---------LAVGEPPTTKG 279 (438)
T ss_pred -----CHHHHHH--HHH------HHHHHHHHHHHC-CCcEE-EEEeChHHHHHHHH-HHH---------HhcCCCCcccc
Confidence 2211111 000 001122222222 32210 00112221 01111 111 123565 789
Q ss_pred CCHHHHHHHHHHHHHHH--hCCc-----eEEEecCChhHHhhcCEEEEEeCCEEEEecChhH
Q psy106 163 IDPVIAEEIWNHLLYLA--ESGR-----TILITTHYIDEAKKSHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~--~~g~-----tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~ 217 (321)
+||.....+.+++.++. ++|. ||++.+||+++ ..||++..|.+|+++.+++.++
T Consensus 280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 99999999999999987 3686 99999999995 4499999999999999998765
No 433
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.49 E-value=3e-13 Score=118.23 Aligned_cols=141 Identities=17% Similarity=0.077 Sum_probs=97.5
Q ss_pred EEEEcCCCCcHHHHHHHHH-cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
+.|.||.|+|||||...++ ...+. | +++.|+.= +.|..+.+.... ..+.... .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g---~~v~~~s~------e~~~~~~~~~~~-~~g~~~~-------~l 56 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------G---EPGLYVTL------EESPEELIENAE-SLGWDLE-------RL 56 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------C---CcEEEEEC------CCCHHHHHHHHH-HcCCChH-------HH
Confidence 6789999999999887654 22221 1 22444431 234444443322 2243321 11
Q ss_pred HHHcCC-ccccCCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEE
Q psy106 118 QALLHL-NHFKRKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGID---PVIAEEIWNHLLYLAESGRTILI 187 (321)
Q Consensus 118 l~~~~l-~~~~~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD---~~~~~~i~~ll~~l~~~g~tIil 187 (321)
...+. ...+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+.+++..+++.|.|+|+
T Consensus 57 -~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~ 135 (187)
T cd01124 57 -EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLL 135 (187)
T ss_pred -HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEE
Confidence 12232 2356788899999998 5555666778999999999999999 88888899999999888999999
Q ss_pred ecCChhH---------Hhh-cCEEEEEe
Q psy106 188 TTHYIDE---------AKK-SHMIGLMR 205 (321)
Q Consensus 188 ~tH~l~~---------~~~-~drv~il~ 205 (321)
++|+... ++. ||.++.|+
T Consensus 136 v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 136 TSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998765 455 89998887
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=99.49 E-value=1.1e-13 Score=141.75 Aligned_cols=76 Identities=29% Similarity=0.347 Sum_probs=70.1
Q ss_pred ccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 132 SLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 132 ~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
.|||||+||++||++++. +|+++|+|||++|||+.....+.+.|+++++ +.+||++||++..+..||+.+.++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 489999999999999997 6899999999999999999999999999864 69999999999988779999999875
Q ss_pred E
Q psy106 208 I 208 (321)
Q Consensus 208 ~ 208 (321)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 435
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.48 E-value=1.5e-13 Score=136.23 Aligned_cols=169 Identities=20% Similarity=0.122 Sum_probs=124.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
.++-+.+++.|..+ ..+++.+ |++.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+. .
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer----------g--- 194 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER----------G--- 194 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC----------c---
Confidence 46778888888754 4688885 9999999999999999999999999999999988866544432 1
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh-------cCCCEEEEeCCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL-------HDPELLILDEPT 160 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-------~~P~lllLDEPt 160 (321)
.++.|++.......++.. ...=....+.|.|+|+|++.+.+.+ .++-++++|+||
T Consensus 195 --~ev~e~~~~~l~~~gl~~----------------tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 195 --REVKDFIRKELGEEGMRK----------------SVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred --ccHHHHHHHHhhhcccce----------------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 466665542211111100 0011345678999999999999988 799999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
...|+. +++...+.+....|.+..+.||....+++|-+ .++|.|.+..+
T Consensus 257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 257 RFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 999996 66666666665458999999996555666443 36888876544
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.47 E-value=1e-13 Score=122.56 Aligned_cols=67 Identities=30% Similarity=0.394 Sum_probs=55.6
Q ss_pred CCCccChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 129 KCGSLSGGQQRRVSLAITLLHDP---ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~P---~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+...+|.|+||.+.++.++...+ .++++|||-++|.|..++.+.+.|.++.+.+.-+|++||.+..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 35667999999999998888877 89999999999999999999999988766678899999998754
No 437
>PRK03918 chromosome segregation protein; Provisional
Probab=99.47 E-value=1.2e-13 Score=147.87 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=71.2
Q ss_pred cCCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++..|||||+| |++||++++.+|+++|+||||++||+..+..+.++|..+...+.|||++||+.+....||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4678899999999 5566678889999999999999999999999999999887668899999999987666999
Q ss_pred EEEEeC
Q psy106 201 IGLMRK 206 (321)
Q Consensus 201 v~il~~ 206 (321)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 438
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=1.8e-13 Score=124.66 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=87.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+-+|++|+.++|++++|.||||+||||+++++++..-.. .|.- +... ..+++++ ..++..+...|++...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-vpa~-~~~i~~~---~~i~~~~~~~d~~~~~-- 89 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-VPAK-SMRLSLV---DRIFTRIGARDDIMKG-- 89 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-cCcc-ccEeccc---cEEEEecCcccccccC--
Confidence 56889999999999999999999999999999998643211 1110 0000 0111111 1112222222222110
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH-LLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l-l~~l~~ 180 (321)
-++++ -+-++++-+...+.+|.++|+|||++|.||.....+... ++.+.+
T Consensus 90 ----------------------------~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~ 140 (218)
T cd03286 90 ----------------------------ESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK 140 (218)
T ss_pred ----------------------------cchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHH
Confidence 01111 122222222233467999999999999999998888877 666766
Q ss_pred C-CceEEEecCChhHHhh
Q psy106 181 S-GRTILITTHYIDEAKK 197 (321)
Q Consensus 181 ~-g~tIil~tH~l~~~~~ 197 (321)
. +.++|++||+++.+..
T Consensus 141 ~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 141 KVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred hcCCcEEEEeccHHHHHH
Confidence 5 8999999999999865
No 439
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.47 E-value=8e-14 Score=113.20 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=56.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~ 93 (321)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.+. +.++|+||+ ++ ..|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhHH
Confidence 45899999999999999999999999999999986 78999987653 346777777 33 34899
Q ss_pred HHHHH
Q psy106 94 EMICY 98 (321)
Q Consensus 94 e~l~~ 98 (321)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99986
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=1e-12 Score=136.03 Aligned_cols=112 Identities=29% Similarity=0.434 Sum_probs=98.4
Q ss_pred HcCCcc--ccCCCCccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 120 LLHLNH--FKRKCGSLSGGQQRRVSLAITLLHD--PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 120 ~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~--P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+||+. ++|...+|||||.||+.||..+-.. -=+++||||+.||=+.--.++++.|+.|+..|-|+|+|.||.+.+
T Consensus 467 ~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti 546 (935)
T COG0178 467 DVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTI 546 (935)
T ss_pred HcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 356765 5899999999999999999999876 457899999999999999999999999999999999999999999
Q ss_pred hhcCEEEEE------eCCEEEEecChhHHHhhcccccHHHHHHH
Q psy106 196 KKSHMIGLM------RKGILLEESPPKVLLEKYNMKSLEDVFLL 233 (321)
Q Consensus 196 ~~~drv~il------~~G~i~~~g~~~~l~~~~~~~~l~~~~~~ 233 (321)
..||+++=| +.|+|++.|+|+++++.. .++...|+.
T Consensus 547 ~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~--~SlTG~YLs 588 (935)
T COG0178 547 RAADHIIDIGPGAGEHGGEIVAEGTPEELLANP--ESLTGQYLS 588 (935)
T ss_pred hhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC--cchhhHhhc
Confidence 999999877 679999999999998753 356666644
No 441
>PRK13695 putative NTPase; Provisional
Probab=99.46 E-value=2.1e-14 Score=125.50 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
.++|.|+||||||||++.+++.+.+ .| +. ..||+.|+..........+ ....... . ...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~-------~~g~~~~~~~~~~~~~~~~-------~~~~~~~---~--~~~ 60 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YK-------VGGFYTEEVREGGKRIGFK-------IIDLDTG---E--EGI 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-Ce-------EEEEEcHHHHhcCCccceE-------EEEcCCC---C--eEE
Confidence 4789999999999999999876654 34 22 1455555321111111100 0000000 0 001
Q ss_pred HHHcCC-c--cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 118 QALLHL-N--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE--PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 118 l~~~~l-~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE--PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
+...+. . ...+....+|++++-+..+++..+.+|+++++|| |+.++|+. +.+.+.++.+.|.++|+++|+-
T Consensus 61 l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 61 LARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred ccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch
Confidence 111221 1 1234556799999999999999999999999999 44455544 4555555556789999999995
Q ss_pred hHHhhcCEEEEEeCCEEEEe
Q psy106 193 DEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 193 ~~~~~~drv~il~~G~i~~~ 212 (321)
.....+|++..+.+|+|...
T Consensus 137 ~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 137 SVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred hhHHHHHHHhccCCcEEEEE
Confidence 44455999999999999765
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.42 E-value=6.4e-13 Score=145.09 Aligned_cols=80 Identities=29% Similarity=0.321 Sum_probs=73.6
Q ss_pred cCCCCccChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-
Q psy106 127 KRKCGSLSGGQQRRVSLAITLLH--------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK- 197 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~~--------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~- 197 (321)
++++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++.|+||+++||..+..++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 47899999999999999999996 899999999999999999999999999998889999999998888877
Q ss_pred cCEEEEEeC
Q psy106 198 SHMIGLMRK 206 (321)
Q Consensus 198 ~drv~il~~ 206 (321)
..+|.|-+.
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 677777764
No 443
>PRK01156 chromosome segregation protein; Provisional
Probab=99.41 E-value=1.6e-12 Score=139.93 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=69.0
Q ss_pred CCCCccChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-ceEEEecCChhHHhhc
Q psy106 128 RKCGSLSGGQQRRVSL------AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ES-G-RTILITTHYIDEAKKS 198 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~i------A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~-g-~tIil~tH~l~~~~~~ 198 (321)
.++..||||||+|++| |++++.+|++++|||||++||+..+..+.+++.... .. | .|||++|||.+.+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 599999999999999999999999999999997643 33 3 4899999999988779
Q ss_pred CEEEEEe
Q psy106 199 HMIGLMR 205 (321)
Q Consensus 199 drv~il~ 205 (321)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.37 E-value=1.2e-11 Score=132.07 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=61.5
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEecCChhHHh----------hcCEEEEEeCCEEEEecChh
Q psy106 148 LHDPELLILDEPTSGI-DPVIAEEIWNHLLYLAESGRTILITTHYIDEAK----------KSHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 148 ~~~P~lllLDEPtsgL-D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~----------~~drv~il~~G~i~~~g~~~ 216 (321)
..+|+++++|||+.+| ||..++.+.+.++.+++.|.+++++||+++.+. .|++.++|.+|++...++.+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~~ 729 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTRE 729 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchHH
Confidence 5799999999999999 799999999999999888999999999999873 49999999999987666543
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.35 E-value=1.2e-12 Score=142.88 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=69.7
Q ss_pred cCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 127 KRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
+.++..||||||||++||++++ .+|+++||||||++||+.++..+.++|.++++ +.++|++||+++.+..||+++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~~ 1162 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQLY 1162 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhHe
Confidence 4678899999999999999985 67899999999999999999999999999864 478999999999887799987
Q ss_pred EEe
Q psy106 203 LMR 205 (321)
Q Consensus 203 il~ 205 (321)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 554
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.34 E-value=3.3e-12 Score=121.90 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=96.5
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH
Q psy106 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ 108 (321)
Q Consensus 29 isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~ 108 (321)
+++.+..|+.++|.||+|||||||+++|+++++|+.|.+.+.... .+. +.. ++ .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~--El~--~~~----~~------~------------ 190 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR--EIF--LPH----PN------Y------------ 190 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc--ccC--CCC----CC------E------------
Confidence 457788999999999999999999999999999988876653211 000 000 00 0
Q ss_pred HHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEe
Q psy106 109 QIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188 (321)
Q Consensus 109 ~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~ 188 (321)
..+........ ++.....-.++.+|-++|+++++|||.+ .+.+++++.+...+.+++.+
T Consensus 191 ------------~~l~~~~~~~~--~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T 249 (308)
T TIGR02788 191 ------------VHLFYSKGGQG--LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITT 249 (308)
T ss_pred ------------EEEEecCCCCC--cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEE
Confidence 00000000000 1111122356778889999999999996 34567776665333467999
Q ss_pred cCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 189 THYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 189 tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
+|..+.....+|+..|..|++...|.+.+..
T Consensus 250 ~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 250 LHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred EeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 9999966669999999889988888877665
No 447
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=3.6e-12 Score=142.10 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=63.0
Q ss_pred CCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCceEEEecCChhHHh
Q psy106 128 RKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-----ESGRTILITTHYIDEAK 196 (321)
Q Consensus 128 ~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-----~~g~tIil~tH~l~~~~ 196 (321)
...+.||+|||| |++||+|++.+|++|+|||||+|||+.+...+.+.|..+. ..|.|||++|||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345799999999 9999999999999999999999999999999999888763 24789999999999985
Q ss_pred h
Q psy106 197 K 197 (321)
Q Consensus 197 ~ 197 (321)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 3
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.31 E-value=5e-12 Score=106.48 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=83.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
++.|.||||+||||+++.+++...+..+.+ .|+..+....+ ..+... .. .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v----------~~~~~e~~~~~---~~~~~~------~~-------~~~~~ 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV----------VYVDIEEEIEE---LTERLI------GE-------SLKGA 54 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE----------EEEECCcchHH---HHHHHh------hh-------hhccc
Confidence 368999999999999999998876654444 44444332111 111110 00 00000
Q ss_pred HHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCceEEE
Q psy106 118 QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS----------GIDPVIAEEIWNHLLYLAESGRTILI 187 (321)
Q Consensus 118 l~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts----------gLD~~~~~~i~~ll~~l~~~g~tIil 187 (321)
.+ ............+..+.++.+.+++...+|+++++|||++ +.|+...+.+.++....++.+.|+++
T Consensus 55 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~ 132 (165)
T cd01120 55 LD--NLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIF 132 (165)
T ss_pred cc--cEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEE
Confidence 00 1111122333456667778899999999999999999994 55656667777777666667999999
Q ss_pred ecCChhHH
Q psy106 188 TTHYIDEA 195 (321)
Q Consensus 188 ~tH~l~~~ 195 (321)
++|.....
T Consensus 133 ~~~~~~~~ 140 (165)
T cd01120 133 TLQVPSGD 140 (165)
T ss_pred EEecCCcc
Confidence 99977543
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.30 E-value=6.8e-12 Score=126.04 Aligned_cols=149 Identities=23% Similarity=0.356 Sum_probs=101.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
++++.++.+++|++++|+|||||||||++..|++.+.+..|. ++|+++.++. ...++.|++.+++..++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------~kV~LI~~Dt---~RigA~EQLr~~AeilG 313 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------SKVALLTTDS---YRIGGHEQLRIYGKILG 313 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------CeEEEEeCCc---cchhHHHHHHHHHHHhC
Confidence 566778888999999999999999999999999987766653 2578999886 34789999999888877
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-cCCCCccChHHHH-HHHHHHHHhcCC-----CEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 105 MSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQR-RVSLAITLLHDP-----ELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~-~~~~~~LSgGqkQ-Rv~iA~aL~~~P-----~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+........+....+.++... ...+.+.+.+++. .+.-..+++.++ .+|+||.++.+ ..+.+.++.
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~ 387 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQA 387 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHH
Confidence 6543333333344444555432 3456664444432 233444555555 68999999887 344555555
Q ss_pred HHhCCceEEEecC
Q psy106 178 LAESGRTILITTH 190 (321)
Q Consensus 178 l~~~g~tIil~tH 190 (321)
....+.+=++.|+
T Consensus 388 f~~~~~~g~IlTK 400 (484)
T PRK06995 388 YRGPGLAGCILTK 400 (484)
T ss_pred hccCCCCEEEEeC
Confidence 5555666566666
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.30 E-value=2e-11 Score=107.89 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=68.4
Q ss_pred cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
.+.....|.||-=---+.+.+ ++--++|||||-++|.|.-|.+++..|+++++.|.-+||+||.+=.+.. --+|+-++
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 345678899997666666655 4668999999999999999999999999999999999999999988766 66788777
Q ss_pred CCEE
Q psy106 206 KGIL 209 (321)
Q Consensus 206 ~G~i 209 (321)
.+-+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 6643
No 451
>PRK02224 chromosome segregation protein; Provisional
Probab=99.24 E-value=1.7e-11 Score=131.59 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCCccChHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEecCChhHH
Q psy106 129 KCGSLSGGQQR------RVSLAITLLHD-----P-ELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TILITTHYIDEA 195 (321)
Q Consensus 129 ~~~~LSgGqkQ------Rv~iA~aL~~~-----P-~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~-tIil~tH~l~~~ 195 (321)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+.++|.++...|. +||++|||.+.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 99999999864 3 67999999999999999999999999876664 799999999999
Q ss_pred hhcCEEEEEeCC
Q psy106 196 KKSHMIGLMRKG 207 (321)
Q Consensus 196 ~~~drv~il~~G 207 (321)
..||+++.|...
T Consensus 858 ~~ad~~~~~~~~ 869 (880)
T PRK02224 858 GAADDLVRVEKD 869 (880)
T ss_pred HhcCeeEEeecC
Confidence 779999999743
No 452
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.23 E-value=1.8e-11 Score=134.04 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=69.4
Q ss_pred CCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEE
Q psy106 128 RKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGL 203 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~i 203 (321)
+++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++.+ +.++|++||+...+..||+++.
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRAIG 1148 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcceeEe
Confidence 4577999999999999999985 7899999999999999999999999998764 4789999999987777999987
Q ss_pred EeC
Q psy106 204 MRK 206 (321)
Q Consensus 204 l~~ 206 (321)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 653
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.20 E-value=1.4e-10 Score=105.85 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=87.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI 110 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 110 (321)
=+++|.++.|.||+|||||||...++ +..+ .. .++.|+..+. +..+.+.-. ..++....+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g----------~~~~y~~~e~------~~~~~~~~~-~~~g~~~~~- 81 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG----------KKVYVITTEN------TSKSYLKQM-ESVKIDISD- 81 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC----------CEEEEEEcCC------CHHHHHHHH-HHCCCChhH-
Confidence 48899999999999999999998875 2222 12 2344554422 333332211 122222111
Q ss_pred HHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCceE
Q psy106 111 KEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH--DPELLILDEPTSG---IDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~--~P~lllLDEPtsg---LD~~~~~~i~~ll~~l~~~g~tI 185 (321)
......+..... .-......|.++++.+..+..++. +|+++++||||+. .|+....++++.++.++++|.|+
T Consensus 82 -~~~~g~l~i~~~--~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tv 158 (234)
T PRK06067 82 -FFLWGYLRIFPL--NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTI 158 (234)
T ss_pred -HHhCCCceEEec--cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEE
Confidence 000000011111 112234567899999999999998 9999999999964 55555556666677767779999
Q ss_pred EEecCChhH
Q psy106 186 LITTHYIDE 194 (321)
Q Consensus 186 il~tH~l~~ 194 (321)
++++|+...
T Consensus 159 llt~~~~~~ 167 (234)
T PRK06067 159 LITLHPYAF 167 (234)
T ss_pred EEEecCCcC
Confidence 999997654
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.13 E-value=2.8e-10 Score=101.92 Aligned_cols=119 Identities=22% Similarity=0.210 Sum_probs=73.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 116 (321)
++.|.||+||||||+++.+++.+.+. .|.|.....+. -|..+... + + .. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~---E~~~~~~~-----~------~---i~---q--------- 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI---EFVHESKR-----S------L---IN---Q--------- 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc---cccccCcc-----c------e---ee---e---------
Confidence 68899999999999999998887643 45554322111 11111000 0 0 00 0
Q ss_pred HHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 117 ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
...+ .....++. ++++||.++|+++++|||. |++.... .+ +.+..|.+++.++|..+..+
T Consensus 54 --~~vg-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~---~l-~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 54 --REVG-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRL---AL-TAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred --cccC-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHH---HH-HHHHcCCEEEEEecCCcHHH
Confidence 0000 01112221 5889999999999999996 6554332 22 34567999999999998776
Q ss_pred hcCEEEEEe
Q psy106 197 KSHMIGLMR 205 (321)
Q Consensus 197 ~~drv~il~ 205 (321)
.++|++.+-
T Consensus 114 ~~~Rl~~l~ 122 (198)
T cd01131 114 TIDRIIDVF 122 (198)
T ss_pred HHhHHHhhc
Confidence 688876553
No 455
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.06 E-value=5.5e-12 Score=127.42 Aligned_cols=151 Identities=18% Similarity=0.242 Sum_probs=94.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCCccEEEECCccc--------CeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCI--TGQNVLNGGNIHLSITSK--------KQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l--~Gl~~p~~G~I~~~g~~~--------~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
=+++|.++.|.||+|||||||...+ .|+.++....+++..... +.+|+-+++..--. ++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g------~l~~--- 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG------KLFI--- 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC------ceEE---
Confidence 4789999999999999999999876 465554444455432211 22333222110000 0000
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLA--ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA--~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
...... .......+.++++. .++...++|+|++|||.|+ .+|...|+.. +..++.++++++.+
T Consensus 88 -~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L 153 (484)
T TIGR02655 88 -LDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARL 153 (484)
T ss_pred -EecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHH
Confidence 000000 00001122233332 4566788999999999999 6666665544 57788899999999
Q ss_pred HhCCceEEEecCChhH--------H-hh-cCEEEEEe
Q psy106 179 AESGRTILITTHYIDE--------A-KK-SHMIGLMR 205 (321)
Q Consensus 179 ~~~g~tIil~tH~l~~--------~-~~-~drv~il~ 205 (321)
++.|.|+|++||+.++ + +. ||.|+.|+
T Consensus 154 ~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 154 KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 8889999999998864 2 45 89999887
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.06 E-value=1.1e-10 Score=116.36 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=44.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEEECCccc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-NIHLSITSK 74 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~~~g~~~ 74 (321)
.+|++|||++++||+++|+|||||||||||| +|+.+|++| +|.++|.+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 5899999999999999999999999999999 788888888 799998653
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.05 E-value=1.6e-10 Score=102.81 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
++||.||||||||||.++|++++ .+|. +.+++++. ++..++..+........+..+.....+...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~----------~~v~~~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK----------VVIISQDS-YYKDLSHEELEERKNNNYDHPDAFDFDLLISH 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC----------eEEEEecc-cccccccccHHHhccCCCCCCCcccHHHHHHH
Confidence 58999999999999999999987 2333 34455443 23233333322221111111111111222233
Q ss_pred HHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy106 118 QALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166 (321)
Q Consensus 118 l~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~ 166 (321)
+..+... ..+.+..++|.|++++..+ .+.+|+++|+|+|+.+.++.
T Consensus 68 l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 68 LQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 3333332 2567788999999887655 57889999999999999873
No 458
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.02 E-value=4e-09 Score=105.34 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=106.8
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------------CeEEEEcCCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------------KQLGFMPQQISL 86 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------------~~ig~v~Q~~~l 86 (321)
..+++++ |++.+|+.++|+|+||+|||||+++|+|..+|+.|.+...|... ++..++.....
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d- 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD- 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC-
Confidence 4689999 99999999999999999999999999999999888766544321 12222221111
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccCh-HHHHHHHHHHHHhcCCCEEEEeCC--CCCC
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG-GQQRRVSLAITLLHDPELLILDEP--TSGI 163 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSg-GqkQRv~iA~aL~~~P~lllLDEP--tsgL 163 (321)
.+..+-.. +... .-..++.+.+. |.+-+ -...+|+. -|-+| .++ +.+.|| +.|.
T Consensus 229 ---~~p~~r~~--~~~~------a~t~AE~frd~-G~~Vl-l~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gy 285 (440)
T TIGR01026 229 ---QSPLLRLK--GAYV------ATAIAEYFRDQ-GKDVL-LLMDSVTRFAMAQR-EIG---------LAAGEPPATKGY 285 (440)
T ss_pred ---CCHHHHHH--HHHH------HHHHHHHHHHC-CCCEE-EEEeChHHHHHHHH-HHH---------HhcCCCCccccc
Confidence 11211110 0000 01122222222 22110 01122221 11122 122 345676 5599
Q ss_pred CHHHHHHHHHHHHHHHhCCc-------eEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 164 DPVIAEEIWNHLLYLAESGR-------TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~-------tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||.....+.+++.+....+. ||++.+||+ .+. ||++..+.+|+++.+.+.++.
T Consensus 286 pp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 286 TPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred ChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEecchhhC
Confidence 99999999999988876667 899999998 344 899999999999999887664
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=4.9e-09 Score=84.53 Aligned_cols=118 Identities=31% Similarity=0.345 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-cEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
++..+.|.||+|+||||+++.++....... +-+.++.. .... . +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~-----------~~~~-~-~~~~~~----------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE-----------DILE-E-VLDQLL----------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE-----------Eccc-c-CHHHHH-----------------
Confidence 367899999999999999999999887654 23333211 1100 0 110000
Q ss_pred HHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCceEEE
Q psy106 114 AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN------HLLYLAESGRTILI 187 (321)
Q Consensus 114 ~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~------ll~~l~~~g~tIil 187 (321)
...........++++..+..+++|--.+|+++++||+..-.+......... ........+..+|.
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 001223345678888888889988888899999999999999888776654 22222345788899
Q ss_pred ecCC
Q psy106 188 TTHY 191 (321)
Q Consensus 188 ~tH~ 191 (321)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 9884
No 460
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=5.8e-10 Score=108.99 Aligned_cols=63 Identities=29% Similarity=0.367 Sum_probs=57.7
Q ss_pred CccChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 131 GSLSGGQQRRVSLAITLLH---------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~---------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
..+|.||||+++||.+|+. +|+++|||||+++||+..+..+++.|.+. |.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 4789999999999999999 99999999999999999999999999753 679999999987653
No 461
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.99 E-value=1.4e-09 Score=117.58 Aligned_cols=79 Identities=33% Similarity=0.409 Sum_probs=71.6
Q ss_pred CCCCccChHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcC
Q psy106 128 RKCGSLSGGQQRRVSLAITLL------HD--PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~aL~------~~--P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~d 199 (321)
+++.+|||||+=.++||.+|+ .+ -++++|||||..||+.....+++.|..+...+.+|++|||+-++.+++|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 678999999999888877765 35 7999999999999999999999999999877999999999999999999
Q ss_pred EEEEEeC
Q psy106 200 MIGLMRK 206 (321)
Q Consensus 200 rv~il~~ 206 (321)
+++.++.
T Consensus 891 ~~i~V~k 897 (908)
T COG0419 891 VRIRVKK 897 (908)
T ss_pred eEEEEEe
Confidence 9888865
No 462
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.95 E-value=3.5e-10 Score=102.73 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
-+++|+++.|.||+|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 58899999999999999999988665
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.95 E-value=1.2e-09 Score=108.56 Aligned_cols=80 Identities=23% Similarity=0.215 Sum_probs=66.0
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc---c---------------cCeEEEEcCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT---S---------------KKQLGFMPQQI 84 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~---~---------------~~~ig~v~Q~~ 84 (321)
..+++++ |++.+|+.++|+||||||||||+++|+|+.+|+.+.+-..|. + +..++++||+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4599999 999999999999999999999999999999988643322221 1 13689999999
Q ss_pred CCCCCCCHHHHHHHHHHHh
Q psy106 85 SLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~ 103 (321)
..+..+++.+++.+.+.++
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999988776654
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.93 E-value=1.4e-09 Score=96.26 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=58.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc------cCeEEEEcCCC--CCCCCCCHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS------KKQLGFMPQQI--SLYPEFTIDEMI 96 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~------~~~ig~v~Q~~--~l~~~ltv~e~l 96 (321)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.+.+.+.. ...+++++|.. ..++..+..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 3445667889999999999999999999999999999999999986532 13456665543 345667887777
Q ss_pred HHHHH
Q psy106 97 CYYGL 101 (321)
Q Consensus 97 ~~~~~ 101 (321)
....+
T Consensus 94 ~~~lR 98 (186)
T cd01130 94 RSALR 98 (186)
T ss_pred HHHhc
Confidence 65444
No 465
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=4.4e-09 Score=104.82 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=65.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc---c----------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT---S---------- 73 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~---~---------- 73 (321)
+.++.+++++.|..+ ..+++.++ ++.+|+.++|+||||||||||+++|+++.+|+.|.+.+.|+ +
T Consensus 138 ~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 138 PAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 468999999999754 56899996 99999999999999999999999999999999998887542 1
Q ss_pred ---cCeEEEEcCCCC
Q psy106 74 ---KKQLGFMPQQIS 85 (321)
Q Consensus 74 ---~~~ig~v~Q~~~ 85 (321)
.+.|++++|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 146999999653
No 466
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.91 E-value=5.7e-09 Score=95.78 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=39.7
Q ss_pred HHhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHh-CCceEEEecCChh
Q psy106 146 TLLHDPELLILDEPTS------GIDPVIAEEIWNHLLYLAE-SGRTILITTHYID 193 (321)
Q Consensus 146 aL~~~P~lllLDEPts------gLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~ 193 (321)
+...+|+++++| |++ .+|+.....+++.+.++++ .|.||++++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 775 4799999999999999874 5999999999863
No 467
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.89 E-value=1e-07 Score=101.92 Aligned_cols=50 Identities=30% Similarity=0.465 Sum_probs=45.3
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 146 TLLHDPELLILDEPTSGID-PVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD-~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+..+|.++++|||...|| |..++.+.+.++..++.|.+++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 3556899999999999999 9999999999999988899999999999774
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.89 E-value=1.2e-08 Score=109.51 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=84.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
.+=+|+++. +.+.++.|.|||.+||||+||.++-.. -..-| .|||-+.. .+++.+.+.
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G------------~~VPa~~a---~i~~~d~I~----- 654 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG------------SFVPAESA---RIGIVDRIF----- 654 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC------------Cceeccce---EecccCeee-----
Confidence 456778887 778899999999999999999986321 11111 12232211 011111110
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHH
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH--DPELLILDEP---TSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~--~P~lllLDEP---tsgLD~~~~~~i~~ll~~ 177 (321)
-+.|. .|.....+|--|.....++.+|-. ++.++|+||| |+.+|.. ...+.++..
T Consensus 655 ----------------triga--~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~ 714 (854)
T PRK05399 655 ----------------TRIGA--SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEY 714 (854)
T ss_pred ----------------eccCc--ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHH
Confidence 00111 122334567777777777777665 8999999999 8888843 446667777
Q ss_pred HHhC-CceEEEecCChhHHhhcC
Q psy106 178 LAES-GRTILITTHYIDEAKKSH 199 (321)
Q Consensus 178 l~~~-g~tIil~tH~l~~~~~~d 199 (321)
+.+. +.+++++||+.+..+.++
T Consensus 715 l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 715 LHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHhcCCceEEEEechHHHHHHhh
Confidence 7655 589999999966554344
No 469
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.83 E-value=5.2e-08 Score=104.79 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=50.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGI-DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgL-D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
|++++..+|+++++|||+.+| ||..++.+.+.++.+++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 7999999999999998889999999999998753
No 470
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.83 E-value=5.6e-09 Score=116.87 Aligned_cols=64 Identities=25% Similarity=0.396 Sum_probs=56.5
Q ss_pred cCCCCccChHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh
Q psy106 127 KRKCGSLSGGQQRRVS----LAIT--------LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~----iA~a--------L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~ 193 (321)
+++++.||||||||++ +|++ +..+|++++|||||+|||+.++..+++++.++ |.++||+||.+-
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSEREW 1317 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccchh
Confidence 4457899999999996 5655 55899999999999999999999999999887 789999999874
No 471
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=1.6e-07 Score=89.09 Aligned_cols=66 Identities=29% Similarity=0.431 Sum_probs=60.5
Q ss_pred CccChHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 131 GSLSGGQQRRVSLAITLLH--DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~--~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
.+||-|+.+-+++|.+|.. .|.+++||||-++|=|..-..+.+++++.++.+ -|+++||..+.+..
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~ 336 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNA 336 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhh
Confidence 4999999999999999997 599999999999999999999999999987655 79999999999864
No 472
>PRK14079 recF recombination protein F; Provisional
Probab=98.80 E-value=1.1e-08 Score=99.41 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=62.4
Q ss_pred CccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 131 GSLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
.-+|+|||+++++|..|+ .+|++++||||+++||+..+..+.+.|.... .++|.+|+ ...-||++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~---~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTE---APPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCC---CCCCCceE
Confidence 468999999999999999 8999999999999999999999998885432 34444442 22349999
Q ss_pred EEEeCCEEEEecC
Q psy106 202 GLMRKGILLEESP 214 (321)
Q Consensus 202 ~il~~G~i~~~g~ 214 (321)
+.+.+|++.-+.+
T Consensus 336 ~~~~~~~~~~~~~ 348 (349)
T PRK14079 336 LRIEAGVFTPEAP 348 (349)
T ss_pred EEEeccEecCCCC
Confidence 9999998754443
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.76 E-value=5.2e-08 Score=94.49 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=71.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
.++.++.|.||+||||||+++++.+.+.+ .++.|.....+.. |. +++ .. .
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---~~------~~~--------------~~------~ 170 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---YV------HRN--------------KR------S 170 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---hh------ccC--------------cc------c
Confidence 46889999999999999999999987653 3555543211100 00 000 00 0
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
...... .... ..+ -.-++++||-++|+++++||+. |+.+....++ .+..|.+++.+.|-.
T Consensus 171 ----~i~q~e---vg~~--~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 171 ----LINQRE---VGLD--TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTN 230 (343)
T ss_pred ----eEEccc---cCCC--CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCC
Confidence 000000 0000 011 1234678899999999999997 8887754433 346799999999986
Q ss_pred hHHhhcCEE
Q psy106 193 DEAKKSHMI 201 (321)
Q Consensus 193 ~~~~~~drv 201 (321)
+-....+|+
T Consensus 231 ~~~~~~~Rl 239 (343)
T TIGR01420 231 SAAQTIERI 239 (343)
T ss_pred CHHHHHHHH
Confidence 555434444
No 474
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.75 E-value=3.8e-08 Score=108.99 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=81.4
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHH-HHHHHHHHhCCC
Q psy106 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDE-MICYYGLIYGMS 106 (321)
Q Consensus 29 isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e-~l~~~~~~~~~~ 106 (321)
++++.++++++||+||+|+|||||++++.+.+ ...+|.+++++.... +....+...+..+ +....
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~------~~~~~~~~~~~~~~~~~~~------- 266 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS------KSMEIYSSANPDDYNMKLH------- 266 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc------cchhhcccccccccchhHH-------
Confidence 46778899999999999999999999996544 445788887642211 1111111000000 10000
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCc
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA---ESGR 183 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~---~~g~ 183 (321)
-.++....+++..++ .+..+ ++.|+| |..++-+++||+- |.. ..++.+.... ..|.
T Consensus 267 --l~~~~l~~il~~~~~-----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 267 --LQRAFLSEILDKKDI-----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGS 325 (1153)
T ss_pred --HHHHHHHHHhCCCCc-----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCc
Confidence 001122222222221 22233 556665 4466778888983 333 3345554432 3589
Q ss_pred eEEEecCChhHHhh--cCEEEEEe
Q psy106 184 TILITTHYIDEAKK--SHMIGLMR 205 (321)
Q Consensus 184 tIil~tH~l~~~~~--~drv~il~ 205 (321)
+||++|||...+.. +|+++-+.
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEec
Confidence 99999999999854 68776553
No 475
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.69 E-value=4e-08 Score=82.48 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=72.3
Q ss_pred EEEEcCCCCcHHHHHHHHH--cCCCCCccEEEECCcc----cCeEEEEcCC-CCCCCC---CCHHHHHH-----HHH---
Q psy106 39 YSLLGASGCGKTTLLSCIT--GQNVLNGGNIHLSITS----KKQLGFMPQQ-ISLYPE---FTIDEMIC-----YYG--- 100 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~--Gl~~p~~G~I~~~g~~----~~~ig~v~Q~-~~l~~~---ltv~e~l~-----~~~--- 100 (321)
++++|++|||||||++.|+ +..++.+|+....... ... .+.+-+ +.+... ....+... +..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999999999999 6777666654221000 000 111111 111100 00111111 000
Q ss_pred ------HH--hCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCH
Q psy106 101 ------LI--YGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITL-----LHDPELLILDEPTSGIDP 165 (321)
Q Consensus 101 ------~~--~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL-----~~~P~lllLDEPtsgLD~ 165 (321)
.. ...........+...+...+... ...+...+|++++++.....+. ...|+++ |+|++|+
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~ 156 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKG 156 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCC
Confidence 00 00011122223334444444331 2345677899988887666552 3456666 9999999
Q ss_pred HHHHHHHHHHHHH
Q psy106 166 VIAEEIWNHLLYL 178 (321)
Q Consensus 166 ~~~~~i~~ll~~l 178 (321)
.+..++++.|.++
T Consensus 157 ~~~~~l~~~l~~~ 169 (170)
T cd01876 157 QGIDELRALIEKW 169 (170)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988764
No 476
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.66 E-value=3e-08 Score=87.70 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH--Hhh-cCEEEEEeC
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE--AKK-SHMIGLMRK 206 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~--~~~-~drv~il~~ 206 (321)
|+-+|..||.++..+|+.+..+| +.+||..++++.+.+.+..++|.+|++.+|.+.+ +.. ||++++++.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 88999999999999999988877 8899999999999998876667899999999976 444 999988764
No 477
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.61 E-value=1.2e-07 Score=94.51 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=68.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcc---c------------CeEEEE-----c
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITS---K------------KQLGFM-----P 81 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~---~------------~~ig~v-----~ 81 (321)
..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.+.+.|+. . .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3588988 99999999999999999999999999998854 44666654421 1 235566 8
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcCCc-----c-ccCCCCccC
Q psy106 82 QQIS--LYPEFTIDEMICYYGLIYGMS---LQQIKEKAEYLQALLHLN-----H-FKRKCGSLS 134 (321)
Q Consensus 82 Q~~~--l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~ll~~~~l~-----~-~~~~~~~LS 134 (321)
|++. +.+.+ +...+.-+.+.++.. ..+...+..++++..++. . ...+++.||
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 8763 33333 333333222333322 133445666677777762 1 245555555
No 478
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.60 E-value=3.4e-07 Score=95.28 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHH--HHHHHHHHHhCCCHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTID--EMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~--e~l~~~~~~~~~~~~~~~~ 112 (321)
..+.++|+|||||||||+.+++.+..++..|+-... ...|+..+..-++ .... .+-.+ +...+....
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~-----~~~fv~i~~~~l~-~d~~~i~~~ll-----g~~~~~~~~ 242 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE-----DAPFVEVDGTTLR-WDPREVTNPLL-----GSVHDPIYQ 242 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC-----CCCeEEEechhcc-CCHHHHhHHhc-----CCccHHHHH
Confidence 446799999999999999999999887655431100 0112221111111 0111 11111 111111122
Q ss_pred HHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+...++..++.. .+..+.++||| +|+||| +..||+..+..+.+.+.+
T Consensus 243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 3334456677654 56778899999 999999 799999999999999865
No 479
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.60 E-value=1.7e-06 Score=79.69 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=70.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH--------cCCCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT--------GQNVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~--------Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
+-+|+.++-....+..|.|||.+||||+||.++ |..-|- +.++.+.+.. ...+..+..+....|-
T Consensus 32 v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I---~t~~~~~d~~~~~~S~--- 105 (235)
T PF00488_consen 32 VPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRI---FTRIGDDDSIESGLST--- 105 (235)
T ss_dssp --EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEE---EEEES---SSTTSSSH---
T ss_pred ecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEE---Eeeccccccccccccc---
Confidence 446655544444599999999999999999985 655553 3333322111 1122222222222221
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-H
Q psy106 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN-H 174 (321)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-l 174 (321)
|.. +. .++..+++ -+.+..++|+||+..|=++.....+.. .
T Consensus 106 --F~~--------E~-~~~~~il~---------------------------~~~~~sLvliDE~g~gT~~~eg~ai~~ai 147 (235)
T PF00488_consen 106 --FMA--------EM-KRLSSILR---------------------------NATEKSLVLIDELGRGTNPEEGIAIAIAI 147 (235)
T ss_dssp --HHH--------HH-HHHHHHHH---------------------------H--TTEEEEEESTTTTSSHHHHHHHHHHH
T ss_pred --HHH--------hH-HHHHhhhh---------------------------hcccceeeecccccCCCChhHHHHHHHHH
Confidence 111 11 11111111 123567899999999999998877665 4
Q ss_pred HHHHHh-CCceEEEecCChhHHh
Q psy106 175 LLYLAE-SGRTILITTHYIDEAK 196 (321)
Q Consensus 175 l~~l~~-~g~tIil~tH~l~~~~ 196 (321)
+..+.+ .+..++++||+.+..+
T Consensus 148 le~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 148 LEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp HHHHHHTTT-EEEEEES-GGGGG
T ss_pred HHHHHHhccccEEEEeccchhHH
Confidence 555666 4888999999998764
No 480
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.58 E-value=7.6e-07 Score=95.47 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=50.0
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEecCChhHHh----------hcCEEEEEeCC
Q psy106 147 LLHDPELLILDEPTSGID-PVIAEEIWNHLLYLAESGRTILITTHYIDEAK----------KSHMIGLMRKG 207 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD-~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~----------~~drv~il~~G 207 (321)
+-.+|+++++|||+.+|| |..+..+.+.++..++.|.+++++||+++.+. .|+..++|.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 345899999999999999 78899999999999888999999999997542 35655555543
No 481
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.56 E-value=1.1e-07 Score=83.37 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=44.9
Q ss_pred HHHHHHcCCcc--ccCCCCccChHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy106 115 EYLQALLHLNH--FKRKCGSLSGGQQRRVS--LAITLLH-DPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 115 ~~ll~~~~l~~--~~~~~~~LSgGqkQRv~--iA~aL~~-~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
...++..+... .-.++..+|+|++|++. +++.+-. +++++ |+|++|+.+.+++.+.|.++.++
T Consensus 128 ~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 128 IEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 34445555542 34567789999999987 5555544 34443 99999999999999999887654
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.53 E-value=6.6e-08 Score=85.19 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
+||+++++|||||||||++++|+|++.+ +.++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcc
Confidence 6999999999999999999999999877 4566543
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.52 E-value=3.4e-07 Score=92.01 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=78.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
=+.+|+++.|.|++|+|||||+..++.......+. +-|+.-+. +..+ +..-+...+...+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~k----------vlYvs~EE------s~~q-i~~ra~rlg~~~~--- 149 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMK----------VLYVSGEE------SLQQ-IKMRAIRLGLPEP--- 149 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCc----------EEEEECcC------CHHH-HHHHHHHcCCChH---
Confidence 48899999999999999999999988755443333 33433221 2222 1111111111100
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---------HHHHHHHHHHHHHHH-hC
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID---------PVIAEEIWNHLLYLA-ES 181 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD---------~~~~~~i~~ll~~l~-~~ 181 (321)
.+.+ . .+.+-. +-...+ --.+|+++++|.-++=.. +...+++...|.+++ +.
T Consensus 150 --------~l~~--~----~e~~~~--~I~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~ 211 (454)
T TIGR00416 150 --------NLYV--L----SETNWE--QICANI--EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTR 211 (454)
T ss_pred --------HeEE--c----CCCCHH--HHHHHH--HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 0000 0 011111 111111 225899999998754211 223445555566664 67
Q ss_pred CceEEEecCChhH--------Hhh-cCEEEEEeCCE
Q psy106 182 GRTILITTHYIDE--------AKK-SHMIGLMRKGI 208 (321)
Q Consensus 182 g~tIil~tH~l~~--------~~~-~drv~il~~G~ 208 (321)
|.|+++++|...+ ++. ||.|+.|+.++
T Consensus 212 giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 212 GIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred CCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 9999999997654 456 99999998654
No 484
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.49 E-value=1.7e-07 Score=85.62 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=45.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccE----EEECCcc-----cCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN----IHLSITS-----KKQLGFMPQQISLYPEFTIDEMICYY 99 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~----I~~~g~~-----~~~ig~v~Q~~~l~~~ltv~e~l~~~ 99 (321)
.+..++||.||||||||||+++|++++++++|. +.+++.. ....|++++.. .++.+++.+...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l 104 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALL 104 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHH
Confidence 456799999999999999999999999999998 4333321 13356666532 33455665554443
No 485
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.49 E-value=1.2e-07 Score=89.93 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC--CCccEEEE---CCccc-----CeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV--LNGGNIHL---SITSK-----KQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~--p~~G~I~~---~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
=.++||.||||||||||+++|.+++. |++|+|.+ +|... ++.|++ |...+++.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 36999999999999999999999987 77888765 33211 335543 666666677777766654433
No 486
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.48 E-value=6.7e-06 Score=76.41 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=80.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH-H
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL-I 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~ 102 (321)
+.|+++.--+.+|+++.|.||+|+||||++..++--.....| .++.|+.-+ ++..+....... .
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g---------~~vl~iS~E------~~~~~~~~r~~~~~ 82 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG---------VRVGTISLE------EPVVRTARRLLGQY 82 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC---------ceEEEEEcc------cCHHHHHHHHHHHH
Confidence 468888888999999999999999999999887643322211 223443321 122222211111 0
Q ss_pred hC-----------CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----
Q psy106 103 YG-----------MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDP---- 165 (321)
Q Consensus 103 ~~-----------~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~---- 165 (321)
.+ ....+..+.++.+.+ .+.-.........+ ...-+..++.++ .+|+++++|.++.-.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~ 159 (271)
T cd01122 83 AGKRLHLPDTVFIYTLEEFDAAFDEFEG-TGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERAS 159 (271)
T ss_pred hCCCcccCCccccccHHHHHHHHHHhcC-CCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCc
Confidence 11 111111111222211 01001111122222 234445555554 47999999998664433
Q ss_pred ---H-HHHHHHHHHHHHH-hCCceEEEecCC
Q psy106 166 ---V-IAEEIWNHLLYLA-ESGRTILITTHY 191 (321)
Q Consensus 166 ---~-~~~~i~~ll~~l~-~~g~tIil~tH~ 191 (321)
. ....++..|++++ +.+.||++++|-
T Consensus 160 ~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 160 GDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 1 2345666677775 569999999984
No 487
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=3.9e-07 Score=74.22 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 114 (321)
.+..+.|.||.|+||||+++.++......... +-++..... .. +. ....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~----------v~~~~~~~~-~~-----~~-~~~~-------------- 66 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAP----------FLYLNASDL-LE-----GL-VVAE-------------- 66 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCC----------eEEEehhhh-hh-----hh-HHHH--------------
Confidence 57889999999999999999999877522221 222221110 00 00 0000
Q ss_pred HHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCceEEEec
Q psy106 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-----SGRTILITT 189 (321)
Q Consensus 115 ~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-----~g~tIil~t 189 (321)
.... . .+......+...+|.++++||.-.. ++.....+.+.+.+... .+.++|++|
T Consensus 67 --~~~~------~----------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~ 127 (151)
T cd00009 67 --LFGH------F----------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGAT 127 (151)
T ss_pred --Hhhh------h----------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEec
Confidence 0000 0 5566667777889999999998765 66677788888877653 578899998
Q ss_pred CChh
Q psy106 190 HYID 193 (321)
Q Consensus 190 H~l~ 193 (321)
++..
T Consensus 128 ~~~~ 131 (151)
T cd00009 128 NRPL 131 (151)
T ss_pred Cccc
Confidence 8654
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.47 E-value=2e-06 Score=77.91 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=43.2
Q ss_pred cCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhCCceEEEecCCh---------hHHhh-cCEEEEEe
Q psy106 149 HDPELLILDEPTS------GIDPVIAEEIWNHLLYLAESGRTILITTHYI---------DEAKK-SHMIGLMR 205 (321)
Q Consensus 149 ~~P~lllLDEPts------gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l---------~~~~~-~drv~il~ 205 (321)
.+|+.+++| |.+ +.|+..+..+.++++.+++.|.|+++++|.- ..++. ||.+++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368999999 433 4455567788899999988899999999952 33455 99999985
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.46 E-value=2.8e-07 Score=72.55 Aligned_cols=51 Identities=35% Similarity=0.509 Sum_probs=39.2
Q ss_pred cCCCCccChHHHH-HHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 127 KRKCGSLSGGQQR-RVSLAIT------LLH------DPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 127 ~~~~~~LSgGqkQ-Rv~iA~a------L~~------~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+..+++|||||| .+.+|.+ +.. .|++++|||||++||+..++.+++++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4677899999995 3333333 333 3799999999999999999999999864
No 490
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.46 E-value=2e-07 Score=92.78 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
.++.++++..+..+ ..+++++ |++.+|+.++|+|+||+|||||+++|+|+..++.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47778888888533 5699999 9999999999999999999999999999999999887776654
No 491
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.42 E-value=4.5e-07 Score=87.34 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=48.8
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~ 72 (321)
.++..|..+ ..+++++ |++.+|+.++|+||||+|||||+++|+|...|+.|.+..-|+
T Consensus 48 ~~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 48 PIDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred cceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 344555443 5699999 999999999999999999999999999999999887766443
No 492
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.42 E-value=2.1e-07 Score=94.51 Aligned_cols=62 Identities=21% Similarity=0.102 Sum_probs=56.3
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK 74 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 74 (321)
+.|+++.||. ..+++++++.+..|+.++++||||||||||++.|.|+++|.+|++.+.....
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 4588999987 5699999999999999999999999999999999999999999998876543
No 493
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=7.3e-07 Score=87.38 Aligned_cols=70 Identities=23% Similarity=0.402 Sum_probs=50.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
.++++.++.+++|++++|+||||+||||++..|++......|. ++|+++..+.. .....|.+..++...
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~--------~~V~lit~D~~---R~ga~EqL~~~a~~~ 193 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA--------SKVALLTTDSY---RIGGHEQLRIFGKIL 193 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------CeEEEEecccc---cccHHHHHHHHHHHc
Confidence 4677888999999999999999999999999999764222221 35777775543 235667776655444
Q ss_pred C
Q psy106 104 G 104 (321)
Q Consensus 104 ~ 104 (321)
+
T Consensus 194 g 194 (374)
T PRK14722 194 G 194 (374)
T ss_pred C
Confidence 3
No 494
>PRK08149 ATP synthase SpaL; Validated
Probab=98.41 E-value=5.9e-07 Score=89.38 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=52.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc---cEEEECCccc-------------CeEEEEcCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---GNIHLSITSK-------------KQLGFMPQQIS 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~---G~I~~~g~~~-------------~~ig~v~Q~~~ 85 (321)
..+++++ +++.+||.++|+||||+|||||+++|++...++. |.|-.++.+. +++++|+....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 4699999 9999999999999999999999999999998886 7777666532 56788876543
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.41 E-value=2.3e-07 Score=89.23 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=46.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCCCHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
++|++++++|||||||||++..|++.+.+.+++|.+.+.+. ..+.+++|.....+..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 57999999999999999999999999998888998754432 346677765444443333443
No 496
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.38 E-value=1.2e-07 Score=85.13 Aligned_cols=29 Identities=38% Similarity=0.334 Sum_probs=27.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
++|+++||.||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999998764
No 497
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.37 E-value=5.9e-07 Score=89.49 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=58.0
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEE
Q psy106 14 AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLG 78 (321)
Q Consensus 14 l~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig 78 (321)
++..+..+ ..+++++ |++.+|+.++|+||||+|||||+++|+|...|+.|.+...|... ...+
T Consensus 125 i~~~l~tG-~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~t 202 (422)
T TIGR02546 125 IDQPLPTG-VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRS 202 (422)
T ss_pred cccccCCC-ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccce
Confidence 34444333 4699999 99999999999999999999999999999999998887644321 2356
Q ss_pred EEcCCCCCCCCCC
Q psy106 79 FMPQQISLYPEFT 91 (321)
Q Consensus 79 ~v~Q~~~l~~~lt 91 (321)
.+++....++.++
T Consensus 203 vvv~~~s~~p~~~ 215 (422)
T TIGR02546 203 VLVVSTSDRPSLE 215 (422)
T ss_pred EEEeccccCCHHH
Confidence 6777776555443
No 498
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=2e-06 Score=85.60 Aligned_cols=62 Identities=23% Similarity=0.510 Sum_probs=40.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~ 105 (321)
+++|++++++||||+|||||++.|+|......| ..+++++..+.. .....|.+.+++...+.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~--------~~~v~~i~~d~~---rigalEQL~~~a~ilGv 249 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG--------ADKVALLTTDSY---RIGGHEQLRIYGKLLGV 249 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------CCeEEEEecCCc---chhHHHHHHHHHHHcCC
Confidence 478999999999999999999999985311111 123555554442 12455666665555544
No 499
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.34 E-value=8.6e-07 Score=83.95 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=56.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC---Cccc---------CeEEEEcCCCCC---C-CC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITSK---------KQLGFMPQQISL---Y-PE 89 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~---g~~~---------~~ig~v~Q~~~l---~-~~ 89 (321)
++.+...+. +++++++||||+|||||+|.|+|...++.|++... |... ...|++.+.|.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344555555 58999999999999999999999999999998752 2211 236789999876 3 56
Q ss_pred CCHHHHHHHHHHH
Q psy106 90 FTIDEMICYYGLI 102 (321)
Q Consensus 90 ltv~e~l~~~~~~ 102 (321)
++..|...++..+
T Consensus 231 ~~~~~~~~~f~~~ 243 (287)
T cd01854 231 IDPEELAHYFPEF 243 (287)
T ss_pred CCHHHHHHHhHHH
Confidence 7888877665443
No 500
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.33 E-value=2.6e-06 Score=83.67 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=75.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
=+.+|+++.|.||+|+|||||+..++.......+.+ -|+.-+. +..+ +...+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~V----------lYvs~EE------s~~q-i~~Ra~---------- 130 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKV----------LYVSGEE------SPEQ-IKLRAD---------- 130 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE----------EEEECCc------CHHH-HHHHHH----------
Confidence 378899999999999999999999987665443333 3443221 1111 111011
Q ss_pred HHHHHHHHHcCCcccc-CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHH-h
Q psy106 112 EKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS----GID-----PVIAEEIWNHLLYLA-E 180 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~-~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts----gLD-----~~~~~~i~~ll~~l~-~ 180 (321)
.+++...+ ....+.+-. +-. +..--.+|+++++|+-.+ .+| ....+++...|.+++ +
T Consensus 131 --------rlg~~~~~l~l~~e~~le--~I~--~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~ 198 (372)
T cd01121 131 --------RLGISTENLYLLAETNLE--DIL--ASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE 198 (372)
T ss_pred --------HcCCCcccEEEEccCcHH--HHH--HHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 11111000 000111111 111 111235899999999632 232 222344455555554 5
Q ss_pred CCceEEEecCChh--------HHhh-cCEEEEEeCC
Q psy106 181 SGRTILITTHYID--------EAKK-SHMIGLMRKG 207 (321)
Q Consensus 181 ~g~tIil~tH~l~--------~~~~-~drv~il~~G 207 (321)
.|.|++++.|--. .++. +|.++.++..
T Consensus 199 ~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 199 RNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 6999999999433 2455 8998888754
Done!