Query psy106
Match_columns 321
No_of_seqs 364 out of 1826
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:29:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.2E-59 4E-64 455.1 30.5 218 6-223 22-256 (366)
2 1vpl_A ABC transporter, ATP-bi 100.0 4E-59 1.4E-63 432.0 31.1 225 6-232 13-247 (256)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-59 4.7E-64 453.9 28.2 215 7-223 3-231 (359)
4 3rlf_A Maltose/maltodextrin im 100.0 3.1E-59 1.1E-63 454.5 30.3 214 8-223 3-226 (381)
5 1b0u_A Histidine permease; ABC 100.0 6.2E-59 2.1E-63 431.7 31.0 214 6-221 4-243 (262)
6 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-59 8.3E-64 437.7 28.1 219 1-221 1-234 (275)
7 2olj_A Amino acid ABC transpor 100.0 7.7E-59 2.6E-63 431.7 30.7 213 7-221 23-249 (263)
8 2pcj_A ABC transporter, lipopr 100.0 5.5E-59 1.9E-63 422.5 28.9 207 6-214 2-222 (224)
9 3tif_A Uncharacterized ABC tra 100.0 8.8E-59 3E-63 424.2 27.3 211 8-218 1-232 (235)
10 1z47_A CYSA, putative ABC-tran 100.0 2.2E-58 7.6E-63 445.2 30.0 217 4-222 10-237 (355)
11 4g1u_C Hemin import ATP-bindin 100.0 2.3E-58 8E-63 429.0 26.2 211 6-220 9-237 (266)
12 1ji0_A ABC transporter; ATP bi 100.0 4.1E-58 1.4E-62 420.8 27.1 213 5-220 3-228 (240)
13 2it1_A 362AA long hypothetical 100.0 6.6E-58 2.3E-62 443.0 29.5 214 8-223 3-226 (362)
14 1g6h_A High-affinity branched- 100.0 1.6E-58 5.5E-63 427.5 23.8 210 6-217 5-239 (257)
15 2yyz_A Sugar ABC transporter, 100.0 4.2E-58 1.5E-62 443.9 26.7 214 8-223 3-226 (359)
16 1g29_1 MALK, maltose transport 100.0 2.1E-57 7.1E-62 441.1 30.7 214 8-223 3-232 (372)
17 1v43_A Sugar-binding transport 100.0 1E-57 3.5E-62 443.1 27.4 213 8-222 11-233 (372)
18 1oxx_K GLCV, glucose, ABC tran 100.0 8.8E-58 3E-62 441.0 26.3 213 8-222 3-232 (353)
19 3d31_A Sulfate/molybdate ABC t 100.0 3.3E-57 1.1E-61 436.1 27.3 210 8-223 1-220 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 5.7E-57 2E-61 413.8 23.0 207 8-221 1-217 (240)
21 2yz2_A Putative ABC transporte 100.0 2.9E-56 9.8E-61 414.5 24.7 213 8-221 2-228 (266)
22 2nq2_C Hypothetical ABC transp 100.0 1.6E-55 5.5E-60 407.0 28.3 207 7-220 3-217 (253)
23 2ihy_A ABC transporter, ATP-bi 100.0 3.4E-56 1.2E-60 417.1 23.0 213 6-220 19-252 (279)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 2.7E-55 9.1E-60 404.4 24.1 207 8-216 3-229 (250)
25 2zu0_C Probable ATP-dependent 100.0 1.5E-54 5.1E-59 403.3 27.8 212 6-219 18-253 (267)
26 2ixe_A Antigen peptide transpo 100.0 1.5E-54 5.3E-59 404.1 23.7 213 7-221 15-246 (271)
27 2ff7_A Alpha-hemolysin translo 100.0 4.2E-54 1.5E-58 396.0 25.1 204 8-221 7-233 (247)
28 2qi9_C Vitamin B12 import ATP- 100.0 6.4E-54 2.2E-58 395.6 23.0 202 7-220 3-222 (249)
29 1mv5_A LMRA, multidrug resista 100.0 3.2E-54 1.1E-58 395.5 16.7 204 8-220 1-226 (243)
30 3nh6_A ATP-binding cassette SU 100.0 3.6E-53 1.2E-57 401.5 22.6 210 7-221 52-278 (306)
31 1sgw_A Putative ABC transporte 100.0 5.9E-54 2E-58 387.6 16.3 198 6-209 8-210 (214)
32 2pze_A Cystic fibrosis transme 100.0 7.1E-53 2.4E-57 383.5 23.3 202 7-221 5-219 (229)
33 2ghi_A Transport protein; mult 100.0 1.2E-52 4.2E-57 389.0 24.4 206 7-221 16-243 (260)
34 2cbz_A Multidrug resistance-as 100.0 4.6E-53 1.6E-57 386.8 20.2 205 8-221 3-218 (237)
35 2pjz_A Hypothetical protein ST 100.0 9.9E-53 3.4E-57 390.6 22.8 203 8-221 1-216 (263)
36 3gd7_A Fusion complex of cysti 100.0 6.5E-52 2.2E-56 404.6 20.1 208 6-223 17-245 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 1.2E-49 4E-54 406.3 23.0 208 7-221 340-568 (582)
38 3b60_A Lipid A export ATP-bind 100.0 1.2E-49 4.1E-54 406.2 22.3 208 7-221 340-568 (582)
39 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-49 4.8E-54 406.3 21.1 210 8-221 341-567 (587)
40 4a82_A Cystic fibrosis transme 100.0 2.5E-49 8.4E-54 403.7 22.6 206 8-221 339-565 (578)
41 2yl4_A ATP-binding cassette SU 100.0 4.9E-49 1.7E-53 402.6 23.7 206 9-220 342-570 (595)
42 2bbs_A Cystic fibrosis transme 100.0 4.5E-49 1.5E-53 370.8 19.9 197 6-220 38-247 (290)
43 3qf4_B Uncharacterized ABC tra 100.0 5.4E-49 1.8E-53 402.8 17.9 205 8-221 354-579 (598)
44 3bk7_A ABC transporter ATP-bin 100.0 1.3E-45 4.5E-50 378.2 23.8 204 6-220 355-563 (607)
45 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-45 3.9E-50 374.1 21.7 203 6-220 285-493 (538)
46 3ozx_A RNAse L inhibitor; ATP 100.0 8.2E-45 2.8E-49 367.8 21.5 205 6-219 267-476 (538)
47 4f4c_A Multidrug resistance pr 100.0 3.1E-45 1.1E-49 403.2 18.9 208 8-221 1076-1305(1321)
48 3g5u_A MCG1178, multidrug resi 100.0 4.5E-44 1.5E-48 393.1 23.4 210 8-221 387-614 (1284)
49 3g5u_A MCG1178, multidrug resi 100.0 2.2E-44 7.5E-49 395.6 20.0 212 8-221 1030-1259(1284)
50 4f4c_A Multidrug resistance pr 100.0 3.8E-43 1.3E-47 386.6 24.9 206 8-221 415-642 (1321)
51 3j16_B RLI1P; ribosome recycli 100.0 5.3E-43 1.8E-47 358.8 18.4 201 12-221 350-560 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 5.4E-43 1.8E-47 358.9 14.1 189 8-207 83-304 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 7.5E-43 2.6E-47 353.5 14.2 188 9-207 21-234 (538)
54 2iw3_A Elongation factor 3A; a 100.0 3.1E-42 1.1E-46 366.8 17.3 204 6-214 669-981 (986)
55 3ux8_A Excinuclease ABC, A sub 100.0 3.7E-42 1.3E-46 356.1 17.3 198 23-221 31-299 (670)
56 2iw3_A Elongation factor 3A; a 100.0 1.3E-40 4.4E-45 354.4 24.4 193 8-220 435-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-39 4.6E-44 336.9 20.0 192 23-221 335-641 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 8E-39 2.7E-43 327.9 16.6 188 13-209 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 4.2E-39 1.4E-43 326.0 12.0 183 12-208 3-214 (538)
60 3pih_A Uvrabc system protein A 100.0 6E-36 2E-40 317.7 22.8 193 23-221 597-903 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 2.4E-36 8.3E-41 320.0 17.7 202 7-221 628-943 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 4.2E-36 1.4E-40 316.5 19.4 207 6-221 500-828 (842)
63 2ygr_A Uvrabc system protein A 100.0 1.2E-35 4.2E-40 315.5 18.1 202 7-221 646-961 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.6E-40 1.2E-44 328.0 -17.5 196 6-219 116-337 (460)
65 4aby_A DNA repair protein RECN 100.0 2.4E-33 8.1E-38 272.8 22.0 187 24-213 49-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 4.1E-32 1.4E-36 262.5 14.8 85 127-211 274-364 (365)
67 4gp7_A Metallophosphoesterase; 100.0 1.8E-32 6.2E-37 237.3 4.5 151 28-201 1-168 (171)
68 3b85_A Phosphate starvation-in 100.0 2.9E-34 9.9E-39 257.6 -9.5 145 16-197 8-163 (208)
69 1e69_A Chromosome segregation 100.0 8.6E-30 2.9E-34 241.6 13.4 90 126-216 213-309 (322)
70 1tq4_A IIGP1, interferon-induc 100.0 5.7E-33 2E-37 272.6 -12.3 174 23-207 36-254 (413)
71 1znw_A Guanylate kinase, GMP k 100.0 8.9E-33 3.1E-37 245.5 -15.8 170 23-205 9-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 2.2E-29 7.7E-34 220.3 1.9 143 38-211 2-159 (178)
73 2v9p_A Replication protein E1; 99.9 1.5E-32 5.1E-37 259.9 -24.0 162 8-218 101-264 (305)
74 2dpy_A FLII, flagellum-specifi 99.9 1.8E-30 6E-35 256.9 -12.5 188 7-220 130-344 (438)
75 3b9q_A Chloroplast SRP recepto 99.9 9E-29 3.1E-33 233.7 -0.5 166 25-209 89-284 (302)
76 2vf7_A UVRA2, excinuclease ABC 99.9 4.9E-25 1.7E-29 232.4 20.9 111 110-221 356-476 (842)
77 2o8b_B DNA mismatch repair pro 99.9 5.1E-27 1.7E-31 252.4 4.1 173 5-217 747-939 (1022)
78 2og2_A Putative signal recogni 99.9 3.3E-27 1.1E-31 227.9 1.3 164 27-209 148-341 (359)
79 2o5v_A DNA replication and rep 99.9 3E-25 1E-29 214.3 13.9 86 127-218 259-354 (359)
80 3qkt_A DNA double-strand break 99.9 1.5E-24 5E-29 207.1 18.2 79 127-205 243-327 (339)
81 1z6g_A Guanylate kinase; struc 99.9 3.6E-30 1.2E-34 231.5 -20.0 146 23-179 10-174 (218)
82 2obl_A ESCN; ATPase, hydrolase 99.9 8.9E-27 3.1E-31 224.0 1.4 186 7-219 44-254 (347)
83 3sop_A Neuronal-specific septi 99.9 1E-27 3.4E-32 223.0 -6.3 144 38-195 4-153 (270)
84 3aez_A Pantothenate kinase; tr 99.9 6.4E-29 2.2E-33 235.6 -14.9 179 7-208 42-246 (312)
85 1tf7_A KAIC; homohexamer, hexa 99.9 7.8E-26 2.7E-30 227.8 6.2 153 30-208 275-444 (525)
86 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.1E-26 3.9E-31 221.6 -0.4 125 25-208 160-291 (330)
87 1tf7_A KAIC; homohexamer, hexa 99.9 3.2E-28 1.1E-32 245.2 -13.0 174 7-208 11-211 (525)
88 1cr0_A DNA primase/helicase; R 99.9 1.3E-25 4.6E-30 209.2 4.4 177 23-209 22-237 (296)
89 3pih_A Uvrabc system protein A 99.9 6.1E-25 2.1E-29 233.4 9.2 158 52-221 384-561 (916)
90 2ehv_A Hypothetical protein PH 99.9 1.7E-26 6E-31 207.6 -2.5 174 8-206 6-207 (251)
91 2jeo_A Uridine-cytidine kinase 99.9 4.1E-26 1.4E-30 207.7 -1.9 173 23-221 12-188 (245)
92 4ad8_A DNA repair protein RECN 99.9 8.6E-24 2.9E-28 212.5 13.9 80 128-208 392-474 (517)
93 3thx_A DNA mismatch repair pro 99.9 1.2E-23 4.2E-28 224.1 10.8 167 8-219 631-812 (934)
94 2r6f_A Excinuclease ABC subuni 99.9 6.6E-23 2.3E-27 217.5 15.4 130 89-220 451-600 (972)
95 2ygr_A Uvrabc system protein A 99.9 1.1E-22 3.7E-27 216.4 12.8 132 88-221 467-618 (993)
96 1ewq_A DNA mismatch repair pro 99.9 6.9E-24 2.4E-28 222.2 3.5 159 8-214 550-718 (765)
97 4a74_A DNA repair and recombin 99.9 4.4E-24 1.5E-28 189.6 1.4 144 32-207 21-200 (231)
98 2qnr_A Septin-2, protein NEDD5 99.9 6E-25 2.1E-29 207.0 -5.4 158 12-193 2-168 (301)
99 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 5E-22 1.7E-26 169.1 11.6 82 127-208 52-141 (148)
100 1w1w_A Structural maintenance 99.9 6.5E-22 2.2E-26 194.3 13.7 77 129-205 330-410 (430)
101 3thx_B DNA mismatch repair pro 99.9 9.9E-23 3.4E-27 216.7 5.8 142 23-200 660-804 (918)
102 2eyu_A Twitching motility prot 99.9 3.4E-23 1.2E-27 191.5 1.7 140 9-205 6-146 (261)
103 3szr_A Interferon-induced GTP- 99.9 8.8E-25 3E-29 224.1 -10.3 183 7-218 9-235 (608)
104 3asz_A Uridine kinase; cytidin 99.9 9.6E-25 3.3E-29 192.9 -9.8 145 33-193 3-162 (211)
105 1wb9_A DNA mismatch repair pro 99.8 1.6E-22 5.3E-27 212.9 1.7 158 23-217 595-755 (800)
106 1rj9_A FTSY, signal recognitio 99.8 2.3E-22 7.8E-27 190.0 -1.6 144 35-194 101-260 (304)
107 2w0m_A SSO2452; RECA, SSPF, un 99.8 4.8E-21 1.6E-25 169.6 6.8 166 23-208 9-193 (235)
108 1pzn_A RAD51, DNA repair and r 99.8 3.7E-22 1.3E-26 191.7 -2.8 160 24-214 118-309 (349)
109 3jvv_A Twitching mobility prot 99.8 2.2E-21 7.4E-26 187.1 2.2 142 12-207 92-246 (356)
110 2i3b_A HCR-ntpase, human cance 99.8 1.5E-22 5E-27 178.9 -8.2 150 36-212 1-168 (189)
111 2qag_C Septin-7; cell cycle, c 99.8 1.1E-21 3.9E-26 192.7 -2.8 160 7-193 10-178 (418)
112 1pui_A ENGB, probable GTP-bind 99.8 2.1E-20 7.2E-25 163.7 5.4 171 8-184 3-202 (210)
113 2bdt_A BH3686; alpha-beta prot 99.8 2E-24 7E-29 187.9 -21.7 168 36-218 2-182 (189)
114 1s96_A Guanylate kinase, GMP k 99.8 7.4E-22 2.5E-26 178.1 -6.1 141 30-221 10-161 (219)
115 1nlf_A Regulatory protein REPA 99.8 3.2E-19 1.1E-23 164.9 10.9 149 32-196 26-185 (279)
116 3kta_B Chromosome segregation 99.7 6.3E-18 2.1E-22 147.4 11.3 81 127-208 59-145 (173)
117 2cvh_A DNA repair and recombin 99.7 2.8E-17 9.4E-22 144.8 13.5 152 24-207 7-185 (220)
118 1zp6_A Hypothetical protein AT 99.7 1.5E-20 5E-25 163.1 -7.8 144 32-189 5-158 (191)
119 2bbw_A Adenylate kinase 4, AK4 99.7 4.5E-21 1.5E-25 174.1 -12.4 139 35-182 26-200 (246)
120 2qag_B Septin-6, protein NEDD5 99.7 2.6E-19 9E-24 176.0 -2.3 176 8-192 16-219 (427)
121 2qm8_A GTPase/ATPase; G protei 99.7 1.5E-21 5.2E-26 186.6 -19.1 167 8-180 29-260 (337)
122 2gza_A Type IV secretion syste 99.7 4.6E-19 1.6E-23 170.8 -2.9 130 26-207 165-302 (361)
123 1lw7_A Transcriptional regulat 99.7 1.8E-20 6.3E-25 180.2 -13.7 177 25-219 157-354 (365)
124 2ewv_A Twitching motility prot 99.7 8.1E-18 2.8E-22 162.8 3.6 122 25-202 127-254 (372)
125 1htw_A HI0065; nucleotide-bind 99.7 1.8E-19 6.2E-24 154.7 -8.0 86 10-99 9-98 (158)
126 1n0w_A DNA repair protein RAD5 99.7 1.2E-16 4E-21 142.8 9.0 147 32-207 20-209 (243)
127 2rcn_A Probable GTPase ENGC; Y 99.7 3.9E-17 1.3E-21 157.4 5.0 116 25-147 205-328 (358)
128 1nij_A Hypothetical protein YJ 99.7 4E-20 1.4E-24 175.1 -16.1 148 37-196 5-193 (318)
129 2yhs_A FTSY, cell division pro 99.6 1.5E-17 5E-22 166.1 -1.2 150 26-194 283-450 (503)
130 3e70_C DPA, signal recognition 99.6 4.2E-17 1.4E-21 155.5 1.5 155 32-209 125-306 (328)
131 3ec2_A DNA replication protein 99.6 1.5E-16 5.2E-21 137.1 4.7 112 30-193 32-144 (180)
132 3auy_A DNA double-strand break 99.6 1.1E-15 3.9E-20 147.2 9.8 77 128-205 276-359 (371)
133 2oap_1 GSPE-2, type II secreti 99.6 1.1E-18 3.7E-23 175.6 -12.9 165 23-199 247-458 (511)
134 1udx_A The GTP-binding protein 99.6 2.7E-16 9.1E-21 154.4 2.7 146 26-190 147-306 (416)
135 2kjq_A DNAA-related protein; s 99.6 1.7E-15 5.9E-20 128.3 6.3 94 25-191 30-124 (149)
136 1ni3_A YCHF GTPase, YCHF GTP-b 99.6 2.8E-18 9.6E-23 167.3 -13.2 160 32-215 16-208 (392)
137 1in4_A RUVB, holliday junction 99.6 2.1E-18 7.1E-23 163.9 -14.7 169 7-200 17-211 (334)
138 1p9r_A General secretion pathw 99.5 2E-18 6.7E-23 169.7 -16.6 139 9-155 144-314 (418)
139 2yv5_A YJEQ protein; hydrolase 99.5 2.4E-16 8.3E-21 148.2 -1.9 112 32-145 161-300 (302)
140 1sxj_E Activator 1 40 kDa subu 99.5 9.1E-15 3.1E-19 138.1 7.5 132 38-195 38-177 (354)
141 1sq5_A Pantothenate kinase; P- 99.5 2E-17 6.7E-22 155.8 -10.8 135 7-165 36-199 (308)
142 1odf_A YGR205W, hypothetical 3 99.5 2.6E-16 8.8E-21 147.6 -4.6 126 34-167 29-169 (290)
143 3lda_A DNA repair protein RAD5 99.5 9.9E-14 3.4E-18 135.5 12.9 146 32-207 174-363 (400)
144 2f1r_A Molybdopterin-guanine d 99.5 6.8E-17 2.3E-21 140.4 -9.8 129 37-182 3-163 (171)
145 3c8u_A Fructokinase; YP_612366 99.5 2.9E-16 9.8E-21 139.0 -8.6 154 33-220 19-181 (208)
146 2px0_A Flagellar biosynthesis 99.4 1.9E-13 6.4E-18 128.4 7.8 140 34-212 103-247 (296)
147 2x8a_A Nuclear valosin-contain 99.4 1.3E-17 4.3E-22 154.8 -20.8 135 23-175 33-190 (274)
148 3lnc_A Guanylate kinase, GMP k 99.4 2.4E-18 8.2E-23 154.5 -25.2 160 24-195 15-198 (231)
149 1u0l_A Probable GTPase ENGC; p 99.4 2.8E-15 9.6E-20 140.7 -5.7 101 31-135 164-294 (301)
150 1ls1_A Signal recognition part 99.4 1.7E-13 6E-18 128.4 5.5 131 10-178 78-209 (295)
151 1vma_A Cell division protein F 99.4 9.8E-14 3.3E-18 131.0 2.8 113 28-178 96-211 (306)
152 1lvg_A Guanylate kinase, GMP k 99.4 5.3E-17 1.8E-21 143.2 -19.3 147 34-205 2-172 (198)
153 2dr3_A UPF0273 protein PH0284; 99.4 1.6E-13 5.6E-18 122.3 2.9 164 24-206 10-196 (247)
154 1t9h_A YLOQ, probable GTPase E 99.3 2.4E-14 8.4E-19 135.2 -4.8 109 31-140 168-303 (307)
155 3tr0_A Guanylate kinase, GMP k 99.3 3.4E-14 1.2E-18 123.9 -6.5 63 30-96 1-72 (205)
156 2zr9_A Protein RECA, recombina 99.3 5.5E-12 1.9E-16 121.0 7.6 145 32-214 57-237 (349)
157 3euj_A Chromosome partition pr 99.2 2.3E-12 8E-17 128.5 4.0 59 10-73 8-66 (483)
158 2r6a_A DNAB helicase, replicat 99.2 4.3E-11 1.5E-15 118.2 11.6 169 24-210 191-402 (454)
159 1iy2_A ATP-dependent metallopr 99.2 8.2E-16 2.8E-20 141.7 -21.3 129 11-159 52-194 (278)
160 2ius_A DNA translocase FTSK; n 99.2 2.5E-13 8.6E-18 136.3 -5.1 163 27-193 158-343 (512)
161 1ixz_A ATP-dependent metallopr 99.2 7.2E-16 2.5E-20 139.8 -21.7 131 10-160 27-171 (254)
162 3k1j_A LON protease, ATP-depen 99.1 3.5E-13 1.2E-17 137.7 -8.9 161 13-177 39-227 (604)
163 1oix_A RAS-related protein RAB 99.1 1.2E-11 4E-16 107.2 -0.6 37 139-177 152-188 (191)
164 1qhl_A Protein (cell division 99.1 2.7E-12 9.2E-17 116.3 -5.0 56 8-73 9-64 (227)
165 1svm_A Large T antigen; AAA+ f 99.0 3E-13 1E-17 131.2 -14.2 146 24-185 157-325 (377)
166 3kta_A Chromosome segregation 98.9 1.1E-09 3.6E-14 93.8 4.8 71 10-85 3-90 (182)
167 3hr8_A Protein RECA; alpha and 98.9 2.2E-09 7.4E-14 103.3 7.0 36 32-67 57-92 (356)
168 2qtf_A Protein HFLX, GTP-bindi 98.9 1.7E-10 6E-15 111.1 -0.9 134 38-179 181-352 (364)
169 3nwj_A ATSK2; P loop, shikimat 98.8 1.6E-10 5.4E-15 106.0 -2.0 52 7-60 16-72 (250)
170 2ce7_A Cell division protein F 98.8 5.4E-09 1.9E-13 104.1 8.8 115 24-195 39-167 (476)
171 2xau_A PRE-mRNA-splicing facto 98.8 4.3E-09 1.5E-13 110.5 7.6 144 33-199 106-260 (773)
172 1jjv_A Dephospho-COA kinase; P 98.8 4.5E-10 1.5E-14 98.2 -0.2 124 38-205 4-131 (206)
173 2f9l_A RAB11B, member RAS onco 98.8 1E-09 3.5E-14 95.1 1.6 36 141-178 130-165 (199)
174 4eun_A Thermoresistant glucoki 98.8 3.4E-10 1.2E-14 99.0 -1.9 45 25-73 18-62 (200)
175 2e87_A Hypothetical protein PH 98.7 6.5E-09 2.2E-13 99.3 5.7 123 35-193 166-293 (357)
176 3uie_A Adenylyl-sulfate kinase 98.7 9.1E-10 3.1E-14 96.3 -2.8 60 12-74 3-64 (200)
177 3a00_A Guanylate kinase, GMP k 98.7 5.6E-09 1.9E-13 90.3 2.0 30 36-65 1-30 (186)
178 4e22_A Cytidylate kinase; P-lo 98.6 2.3E-09 7.8E-14 97.6 -1.0 42 24-68 18-62 (252)
179 2j41_A Guanylate kinase; GMP, 98.6 1.5E-08 5E-13 87.9 3.9 35 31-65 1-35 (207)
180 3tqc_A Pantothenate kinase; bi 98.6 3.3E-11 1.1E-15 114.5 -14.8 137 15-165 67-211 (321)
181 2dhr_A FTSH; AAA+ protein, hex 98.6 1.6E-10 5.4E-15 115.8 -10.7 130 12-161 44-187 (499)
182 1zu4_A FTSY; GTPase, signal re 98.6 1E-08 3.5E-13 97.1 1.3 46 26-71 95-140 (320)
183 1fnn_A CDC6P, cell division co 98.6 2.1E-07 7.3E-12 87.8 10.2 125 35-195 41-172 (389)
184 4a1f_A DNAB helicase, replicat 98.5 1.1E-07 3.8E-12 90.8 7.7 128 24-190 34-164 (338)
185 3t34_A Dynamin-related protein 98.5 3.8E-07 1.3E-11 86.9 11.5 175 12-190 12-212 (360)
186 2www_A Methylmalonic aciduria 98.5 1.1E-08 3.8E-13 97.7 -0.1 38 34-71 72-109 (349)
187 3kl4_A SRP54, signal recogniti 98.5 3.2E-07 1.1E-11 90.3 9.8 125 35-191 96-223 (433)
188 1kgd_A CASK, peripheral plasma 98.4 5.7E-08 2E-12 83.5 2.3 35 35-69 4-39 (180)
189 2dy1_A Elongation factor G; tr 98.4 6.5E-08 2.2E-12 99.9 2.8 124 30-194 3-138 (665)
190 3vaa_A Shikimate kinase, SK; s 98.4 1.1E-07 3.8E-12 82.8 3.4 38 23-60 12-49 (199)
191 2vp4_A Deoxynucleoside kinase; 98.4 1.3E-07 4.4E-12 84.5 2.9 40 30-73 14-53 (230)
192 1rz3_A Hypothetical protein rb 98.3 1.1E-07 3.7E-12 83.2 1.5 42 32-73 18-59 (201)
193 2z4s_A Chromosomal replication 98.3 8.6E-07 3E-11 87.1 7.3 44 149-192 193-237 (440)
194 3tau_A Guanylate kinase, GMP k 98.3 3.7E-07 1.3E-11 80.2 3.8 29 34-62 6-34 (208)
195 1v5w_A DMC1, meiotic recombina 98.3 3.4E-06 1.2E-10 80.1 10.8 138 32-193 118-275 (343)
196 2ffh_A Protein (FFH); SRP54, s 98.3 5.2E-07 1.8E-11 88.6 4.8 151 13-190 81-246 (425)
197 3b9p_A CG5977-PA, isoform A; A 98.3 5.4E-06 1.8E-10 76.0 11.1 71 134-204 97-186 (297)
198 2p67_A LAO/AO transport system 98.2 9.4E-09 3.2E-13 97.8 -8.1 61 8-70 30-90 (341)
199 2z43_A DNA repair and recombin 98.2 4.8E-06 1.7E-10 78.3 10.5 138 32-193 103-259 (324)
200 3bh0_A DNAB-like replicative h 98.2 2.6E-06 8.9E-11 79.9 8.5 130 24-190 56-189 (315)
201 2qby_A CDC6 homolog 1, cell di 98.2 5.5E-07 1.9E-11 84.4 3.3 30 34-63 43-72 (386)
202 1ega_A Protein (GTP-binding pr 98.2 2.7E-08 9.2E-13 93.0 -5.8 145 35-196 7-163 (301)
203 3ney_A 55 kDa erythrocyte memb 98.2 5.2E-07 1.8E-11 79.8 2.8 32 30-61 13-44 (197)
204 2qt1_A Nicotinamide riboside k 98.2 8.2E-07 2.8E-11 77.4 3.7 47 28-88 13-59 (207)
205 1knq_A Gluconate kinase; ALFA/ 98.2 6.7E-07 2.3E-11 75.7 2.6 35 34-72 6-40 (175)
206 3cr8_A Sulfate adenylyltranfer 98.1 3.8E-07 1.3E-11 92.4 1.0 42 32-73 365-408 (552)
207 2q6t_A DNAB replication FORK h 98.0 8E-05 2.7E-09 72.9 15.0 149 24-190 188-361 (444)
208 1kag_A SKI, shikimate kinase I 98.0 1.8E-06 6.1E-11 72.7 2.6 28 35-62 3-30 (173)
209 3lxx_A GTPase IMAP family memb 98.0 5.8E-05 2E-09 67.1 12.0 30 38-67 31-60 (239)
210 3cf0_A Transitional endoplasmi 98.0 1.5E-05 5.1E-10 73.9 8.1 30 31-60 44-73 (301)
211 1ypw_A Transitional endoplasmi 98.0 4.5E-06 1.5E-10 88.0 5.1 33 30-62 232-264 (806)
212 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 3.6E-06 1.2E-10 70.6 3.4 30 27-57 15-44 (149)
213 3m6a_A ATP-dependent protease 98.0 8.8E-07 3E-11 89.4 -0.6 56 13-71 88-143 (543)
214 1u94_A RECA protein, recombina 98.0 6.9E-05 2.3E-09 71.8 12.6 141 33-211 60-236 (356)
215 1l8q_A Chromosomal replication 97.9 3.1E-05 1.1E-09 72.0 9.5 42 149-190 97-139 (324)
216 1cke_A CK, MSSA, protein (cyti 97.9 1.8E-06 6.2E-11 75.8 -0.2 34 36-69 5-41 (227)
217 4eaq_A DTMP kinase, thymidylat 97.9 4.9E-06 1.7E-10 74.6 2.7 43 25-68 12-57 (229)
218 2pez_A Bifunctional 3'-phospho 97.9 3.8E-06 1.3E-10 71.4 1.8 38 34-72 3-42 (179)
219 2w58_A DNAI, primosome compone 97.8 1.3E-05 4.4E-10 69.2 5.0 26 37-62 55-80 (202)
220 3bos_A Putative DNA replicatio 97.8 1.4E-05 4.7E-10 69.8 3.8 43 149-191 103-147 (242)
221 3k53_A Ferrous iron transport 97.7 1.5E-05 5.1E-10 72.6 3.7 44 159-202 144-189 (271)
222 1sxj_D Activator 1 41 kDa subu 97.7 3.3E-07 1.1E-11 85.6 -7.6 43 150-194 133-175 (353)
223 3ice_A Transcription terminati 97.7 3.6E-06 1.2E-10 81.8 -0.6 51 9-60 134-198 (422)
224 1mky_A Probable GTP-binding pr 97.7 2.6E-05 8.9E-10 76.3 5.3 35 38-72 182-228 (439)
225 3auy_A DNA double-strand break 97.7 4.3E-05 1.5E-09 73.1 6.5 43 9-57 3-46 (371)
226 3llm_A ATP-dependent RNA helic 97.7 4.2E-05 1.4E-09 68.1 6.0 140 33-194 73-222 (235)
227 4fcw_A Chaperone protein CLPB; 97.7 5.7E-05 1.9E-09 69.2 7.0 31 37-67 48-78 (311)
228 3qks_A DNA double-strand break 97.7 2.1E-05 7.1E-10 69.1 3.4 30 27-57 15-44 (203)
229 3h4m_A Proteasome-activating n 97.7 0.00012 4.1E-09 66.3 8.6 52 144-195 104-169 (285)
230 1m7g_A Adenylylsulfate kinase; 97.7 9.4E-06 3.2E-10 71.1 1.0 41 31-71 20-62 (211)
231 1j8m_F SRP54, signal recogniti 97.6 6.1E-06 2.1E-10 77.1 -0.6 56 12-72 78-134 (297)
232 2qag_A Septin-2, protein NEDD5 97.6 4.1E-06 1.4E-10 80.2 -2.4 52 8-67 17-68 (361)
233 1m2o_B GTP-binding protein SAR 97.6 5E-05 1.7E-09 64.9 4.4 34 24-58 12-45 (190)
234 2yvu_A Probable adenylyl-sulfa 97.6 2.1E-05 7.3E-10 67.1 2.0 37 32-68 9-45 (186)
235 1f6b_A SAR1; gtpases, N-termin 97.6 1.4E-05 4.6E-10 69.1 0.6 41 16-58 7-47 (198)
236 2i1q_A DNA repair and recombin 97.5 0.00023 7.9E-09 66.3 9.0 140 32-191 94-258 (322)
237 1sxj_C Activator 1 40 kDa subu 97.5 4.4E-06 1.5E-10 78.5 -3.0 52 13-66 23-76 (340)
238 1y63_A LMAJ004144AAA protein; 97.5 4E-05 1.4E-09 65.6 2.9 32 28-59 2-33 (184)
239 2if2_A Dephospho-COA kinase; a 97.5 4.5E-05 1.5E-09 65.9 3.0 21 38-58 3-23 (204)
240 2qor_A Guanylate kinase; phosp 97.4 5.7E-05 1.9E-09 65.7 3.1 30 32-61 8-37 (204)
241 2v1u_A Cell division control p 97.4 0.00013 4.4E-09 68.2 5.4 28 34-61 42-69 (387)
242 2wjg_A FEOB, ferrous iron tran 97.4 0.00011 3.8E-09 61.8 3.8 22 38-59 9-30 (188)
243 2gj8_A MNME, tRNA modification 97.4 0.00012 4E-09 61.6 3.9 27 34-60 2-28 (172)
244 2ohf_A Protein OLA1, GTP-bindi 97.3 8.5E-05 2.9E-09 72.2 3.3 41 32-72 18-69 (396)
245 2wji_A Ferrous iron transport 97.3 0.00015 5.1E-09 60.3 4.2 24 38-61 5-28 (165)
246 1xp8_A RECA protein, recombina 97.3 0.002 7E-08 61.7 12.3 139 32-208 70-244 (366)
247 1njg_A DNA polymerase III subu 97.3 0.00025 8.4E-09 61.0 5.1 45 149-195 125-169 (250)
248 2zej_A Dardarin, leucine-rich 97.3 0.00013 4.4E-09 61.8 3.2 26 38-63 4-29 (184)
249 3cm0_A Adenylate kinase; ATP-b 97.2 0.00014 4.7E-09 61.6 3.2 25 34-58 2-26 (186)
250 1np6_A Molybdopterin-guanine d 97.2 0.00012 4.2E-09 63.0 2.6 27 37-63 7-33 (174)
251 2r8r_A Sensor protein; KDPD, P 97.2 7.5E-05 2.6E-09 67.3 1.1 48 143-190 77-125 (228)
252 3t61_A Gluconokinase; PSI-biol 97.2 0.00014 4.7E-09 62.8 2.7 25 36-60 18-42 (202)
253 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.0014 4.9E-08 62.0 9.7 28 31-58 118-145 (331)
254 2ga8_A Hypothetical 39.9 kDa p 97.2 3.8E-05 1.3E-09 73.7 -1.3 37 24-60 10-48 (359)
255 1q3t_A Cytidylate kinase; nucl 97.1 0.00021 7.3E-09 63.5 3.3 26 33-58 13-38 (236)
256 1ypw_A Transitional endoplasmi 97.1 4.9E-05 1.7E-09 80.1 -1.2 31 30-60 505-535 (806)
257 3io5_A Recombination and repai 97.1 0.0019 6.4E-08 61.2 9.5 124 33-193 26-173 (333)
258 1lv7_A FTSH; alpha/beta domain 97.1 0.00016 5.5E-09 64.8 2.0 35 25-61 36-70 (257)
259 3kb2_A SPBC2 prophage-derived 97.0 0.00033 1.1E-08 58.1 3.4 23 38-60 3-25 (173)
260 3d8b_A Fidgetin-like protein 1 97.0 0.0028 9.7E-08 59.9 10.2 26 35-60 116-141 (357)
261 3cmw_A Protein RECA, recombina 97.0 0.0013 4.4E-08 74.1 8.9 138 33-208 729-902 (1706)
262 3dm5_A SRP54, signal recogniti 97.0 0.0035 1.2E-07 61.7 11.0 28 35-62 99-126 (443)
263 3lxw_A GTPase IMAP family memb 97.0 0.0013 4.3E-08 59.1 7.3 53 140-193 92-150 (247)
264 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00029 9.9E-09 67.5 2.9 46 150-195 262-310 (392)
265 2p5t_B PEZT; postsegregational 97.0 0.00029 9.9E-09 63.5 2.5 40 32-73 28-67 (253)
266 1qhx_A CPT, protein (chloramph 97.0 0.00049 1.7E-08 57.7 3.7 25 36-60 3-27 (178)
267 3r20_A Cytidylate kinase; stru 96.9 0.00027 9.3E-09 63.8 2.2 25 35-59 8-32 (233)
268 1kht_A Adenylate kinase; phosp 96.9 0.00048 1.7E-08 58.1 3.6 25 35-59 2-26 (192)
269 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0033 1.1E-07 55.7 9.0 27 34-60 37-63 (262)
270 3n70_A Transport activator; si 96.9 0.0023 7.8E-08 52.5 7.3 28 35-62 23-50 (145)
271 2b8t_A Thymidine kinase; deoxy 96.9 0.0013 4.5E-08 58.8 6.1 51 150-205 89-150 (223)
272 3lw7_A Adenylate kinase relate 96.9 0.00051 1.7E-08 56.6 3.2 19 38-56 3-21 (179)
273 2qgz_A Helicase loader, putati 96.9 0.00015 5E-09 67.8 -0.1 26 36-61 152-177 (308)
274 1gtv_A TMK, thymidylate kinase 96.9 0.00016 5.4E-09 62.5 -0.1 30 38-67 2-31 (214)
275 2rhm_A Putative kinase; P-loop 96.8 0.00059 2E-08 57.8 3.3 25 34-58 3-27 (193)
276 3syl_A Protein CBBX; photosynt 96.8 0.013 4.4E-07 53.3 12.4 26 35-60 66-91 (309)
277 1vht_A Dephospho-COA kinase; s 96.8 0.00076 2.6E-08 58.8 3.7 24 35-58 3-26 (218)
278 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.015 5.2E-07 54.2 12.9 27 34-60 43-69 (322)
279 2jaq_A Deoxyguanosine kinase; 96.8 0.00075 2.6E-08 57.5 3.4 23 38-60 2-24 (205)
280 1q57_A DNA primase/helicase; d 96.7 0.013 4.3E-07 58.0 12.6 148 26-192 232-404 (503)
281 2ze6_A Isopentenyl transferase 96.7 0.00071 2.4E-08 61.2 3.1 23 37-59 2-24 (253)
282 2v54_A DTMP kinase, thymidylat 96.7 0.00094 3.2E-08 57.1 3.7 26 35-60 3-28 (204)
283 3bgw_A DNAB-like replicative h 96.7 0.0023 7.9E-08 62.8 6.8 129 25-190 186-318 (444)
284 1jal_A YCHF protein; nucleotid 96.7 0.0012 4.2E-08 63.3 4.7 36 36-71 2-48 (363)
285 1ex7_A Guanylate kinase; subst 96.7 0.00082 2.8E-08 58.5 3.1 22 39-60 4-25 (186)
286 2plr_A DTMP kinase, probable t 96.7 0.001 3.5E-08 57.0 3.7 27 35-61 3-29 (213)
287 1ly1_A Polynucleotide kinase; 96.7 0.00095 3.2E-08 55.7 3.4 22 37-58 3-24 (181)
288 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 56.1 3.5 25 35-59 4-28 (185)
289 3iij_A Coilin-interacting nucl 96.7 0.00089 3E-08 56.5 3.1 25 34-58 9-33 (180)
290 1via_A Shikimate kinase; struc 96.6 0.00096 3.3E-08 56.1 3.1 22 38-59 6-27 (175)
291 2wwf_A Thymidilate kinase, put 96.6 0.0011 3.7E-08 57.1 3.5 26 34-59 8-33 (212)
292 1uf9_A TT1252 protein; P-loop, 96.6 0.0011 3.7E-08 56.6 3.5 24 36-59 8-31 (203)
293 3cmw_A Protein RECA, recombina 96.6 0.0075 2.6E-07 68.0 11.0 138 33-208 380-553 (1706)
294 2c95_A Adenylate kinase 1; tra 96.6 0.0012 4E-08 56.1 3.5 25 34-58 7-31 (196)
295 1tev_A UMP-CMP kinase; ploop, 96.6 0.0012 4E-08 55.7 3.5 24 35-58 2-25 (196)
296 1gvn_B Zeta; postsegregational 96.6 0.00094 3.2E-08 61.6 3.1 37 33-71 30-66 (287)
297 1nn5_A Similar to deoxythymidy 96.6 0.0012 4.2E-08 56.7 3.5 27 33-59 6-32 (215)
298 3cmu_A Protein RECA, recombina 96.6 0.0086 2.9E-07 68.5 11.1 138 33-208 380-553 (2050)
299 3co5_A Putative two-component 96.5 0.01 3.5E-07 48.4 8.6 40 150-190 75-114 (143)
300 1xjc_A MOBB protein homolog; s 96.5 0.00081 2.8E-08 57.8 1.8 26 37-62 5-30 (169)
301 1nks_A Adenylate kinase; therm 96.5 0.0014 4.9E-08 55.1 3.2 23 38-60 3-25 (194)
302 4dcu_A GTP-binding protein ENG 96.5 0.0027 9.1E-08 62.2 5.6 56 136-195 88-144 (456)
303 2z0h_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 55.4 3.3 23 38-60 2-24 (197)
304 2vli_A Antibiotic resistance p 96.5 0.0011 3.6E-08 55.8 2.3 26 34-59 3-28 (183)
305 3ake_A Cytidylate kinase; CMP 96.4 0.0015 5.2E-08 55.9 3.0 23 38-60 4-26 (208)
306 3ihw_A Centg3; RAS, centaurin, 96.4 0.0028 9.5E-08 53.6 4.7 28 38-65 22-54 (184)
307 2ged_A SR-beta, signal recogni 96.4 0.0016 5.4E-08 54.9 2.9 23 38-60 50-72 (193)
308 2bwj_A Adenylate kinase 5; pho 96.3 0.002 6.9E-08 54.7 3.4 27 33-59 9-35 (199)
309 1ko7_A HPR kinase/phosphatase; 96.3 0.0036 1.2E-07 58.9 5.2 34 24-58 133-166 (314)
310 2nzj_A GTP-binding protein REM 96.3 0.0022 7.4E-08 52.7 3.2 22 39-60 7-28 (175)
311 3q72_A GTP-binding protein RAD 96.3 0.0018 6.1E-08 52.9 2.7 22 39-60 5-26 (166)
312 2erx_A GTP-binding protein DI- 96.3 0.0022 7.7E-08 52.2 3.2 21 39-59 6-26 (172)
313 1aky_A Adenylate kinase; ATP:A 96.3 0.0025 8.6E-08 55.6 3.7 24 35-58 3-26 (220)
314 1fzq_A ADP-ribosylation factor 96.3 0.0018 6.1E-08 54.5 2.7 22 38-59 18-39 (181)
315 1z2a_A RAS-related protein RAB 96.3 0.002 6.8E-08 52.4 2.8 21 39-59 8-28 (168)
316 2ce2_X GTPase HRAS; signaling 96.2 0.002 6.7E-08 52.0 2.7 21 39-59 6-26 (166)
317 3b1v_A Ferrous iron uptake tra 96.2 0.0022 7.5E-08 58.8 3.2 23 38-60 5-27 (272)
318 1zd8_A GTP:AMP phosphotransfer 96.2 0.0024 8.3E-08 56.0 3.4 25 34-58 5-29 (227)
319 1kao_A RAP2A; GTP-binding prot 96.2 0.0022 7.4E-08 51.9 2.9 21 39-59 6-26 (167)
320 3q85_A GTP-binding protein REM 96.2 0.0025 8.4E-08 52.2 3.2 22 39-60 5-26 (169)
321 2pbr_A DTMP kinase, thymidylat 96.2 0.0025 8.6E-08 53.7 3.3 23 38-60 2-24 (195)
322 2dyk_A GTP-binding protein; GT 96.2 0.0022 7.6E-08 51.9 2.9 22 39-60 4-25 (161)
323 3tw8_B RAS-related protein RAB 96.2 0.0023 7.8E-08 52.8 2.8 21 39-59 12-32 (181)
324 1u8z_A RAS-related protein RAL 96.2 0.0023 7.8E-08 51.8 2.8 21 39-59 7-27 (168)
325 1z0j_A RAB-22, RAS-related pro 96.2 0.0024 8.2E-08 52.1 2.9 22 39-60 9-30 (170)
326 1qf9_A UMP/CMP kinase, protein 96.2 0.0028 9.6E-08 53.2 3.4 23 36-58 6-28 (194)
327 3fb4_A Adenylate kinase; psych 96.2 0.0027 9.3E-08 55.0 3.3 21 38-58 2-22 (216)
328 2cdn_A Adenylate kinase; phosp 96.2 0.003 1E-07 54.2 3.6 25 34-58 18-42 (201)
329 1ukz_A Uridylate kinase; trans 96.1 0.0028 9.6E-08 54.3 3.3 24 35-58 14-37 (203)
330 1ek0_A Protein (GTP-binding pr 96.1 0.0025 8.4E-08 51.9 2.8 22 39-60 6-27 (170)
331 1z08_A RAS-related protein RAB 96.1 0.0025 8.6E-08 52.0 2.9 21 39-59 9-29 (170)
332 1g16_A RAS-related protein SEC 96.1 0.0024 8.1E-08 52.1 2.7 22 39-60 6-27 (170)
333 1svi_A GTP-binding protein YSX 96.1 0.0024 8.4E-08 53.7 2.8 23 37-59 24-46 (195)
334 1ky3_A GTP-binding protein YPT 96.1 0.0025 8.7E-08 52.5 2.9 23 38-60 10-32 (182)
335 1zak_A Adenylate kinase; ATP:A 96.1 0.0024 8.2E-08 55.8 2.8 24 35-58 4-27 (222)
336 1moz_A ARL1, ADP-ribosylation 96.1 0.0017 5.6E-08 54.1 1.7 22 37-58 19-40 (183)
337 3pqc_A Probable GTP-binding pr 96.1 0.0025 8.6E-08 53.3 2.8 23 38-60 25-47 (195)
338 1c1y_A RAS-related protein RAP 96.1 0.0026 8.8E-08 51.7 2.8 21 39-59 6-26 (167)
339 1e6c_A Shikimate kinase; phosp 96.1 0.0026 8.8E-08 52.9 2.8 22 37-58 3-24 (173)
340 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0027 9.1E-08 52.3 2.9 21 39-59 10-30 (177)
341 2cxx_A Probable GTP-binding pr 96.1 0.0027 9.2E-08 53.0 2.9 22 39-60 4-25 (190)
342 2lkc_A Translation initiation 96.1 0.0038 1.3E-07 51.4 3.7 25 35-59 7-31 (178)
343 2fn4_A P23, RAS-related protei 96.1 0.0027 9.2E-08 52.3 2.7 22 38-59 11-32 (181)
344 2pt5_A Shikimate kinase, SK; a 96.1 0.0034 1.2E-07 51.9 3.4 21 38-58 2-22 (168)
345 1zuh_A Shikimate kinase; alpha 96.1 0.0035 1.2E-07 52.1 3.4 22 37-58 8-29 (168)
346 3dl0_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 54.5 3.3 21 38-58 2-22 (216)
347 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0037 1.3E-07 56.4 3.7 26 34-59 2-27 (260)
348 3clv_A RAB5 protein, putative; 96.0 0.003 1E-07 52.8 2.9 22 39-60 10-31 (208)
349 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0031 1E-07 52.5 2.9 21 39-59 7-27 (189)
350 3hu3_A Transitional endoplasmi 96.0 0.0078 2.7E-07 59.8 6.2 28 33-60 235-262 (489)
351 1r2q_A RAS-related protein RAB 96.0 0.0031 1.1E-07 51.2 2.8 20 39-58 9-28 (170)
352 3vfd_A Spastin; ATPase, microt 96.0 0.02 7E-07 54.4 8.8 25 35-59 147-171 (389)
353 2hxs_A RAB-26, RAS-related pro 96.0 0.0037 1.3E-07 51.5 3.2 21 39-59 9-29 (178)
354 3bc1_A RAS-related protein RAB 96.0 0.0033 1.1E-07 52.4 2.8 22 38-59 13-34 (195)
355 1upt_A ARL1, ADP-ribosylation 96.0 0.0034 1.1E-07 51.3 2.8 21 38-58 9-29 (171)
356 2oil_A CATX-8, RAS-related pro 96.0 0.0033 1.1E-07 53.0 2.8 22 38-59 27-48 (193)
357 2iyv_A Shikimate kinase, SK; t 96.0 0.0032 1.1E-07 53.1 2.7 22 37-58 3-24 (184)
358 3t1o_A Gliding protein MGLA; G 95.9 0.0038 1.3E-07 52.2 3.1 23 39-61 17-39 (198)
359 1r8s_A ADP-ribosylation factor 95.9 0.0037 1.3E-07 50.8 2.8 20 39-58 3-22 (164)
360 3cmu_A Protein RECA, recombina 95.9 0.028 9.6E-07 64.4 10.8 26 33-58 1424-1449(2050)
361 2y8e_A RAB-protein 6, GH09086P 95.9 0.0035 1.2E-07 51.5 2.7 21 39-59 17-37 (179)
362 2xb4_A Adenylate kinase; ATP-b 95.9 0.0043 1.5E-07 54.5 3.4 21 38-58 2-22 (223)
363 2a9k_A RAS-related protein RAL 95.9 0.0038 1.3E-07 51.7 2.8 22 38-59 20-41 (187)
364 1uj2_A Uridine-cytidine kinase 95.9 0.0042 1.4E-07 55.6 3.3 23 37-59 23-45 (252)
365 1z0f_A RAB14, member RAS oncog 95.9 0.0039 1.3E-07 51.2 2.8 22 39-60 18-39 (179)
366 2g6b_A RAS-related protein RAB 95.9 0.0039 1.3E-07 51.5 2.8 23 38-60 12-34 (180)
367 1wf3_A GTP-binding protein; GT 95.9 0.0044 1.5E-07 57.5 3.4 22 38-59 9-30 (301)
368 3tlx_A Adenylate kinase 2; str 95.9 0.0047 1.6E-07 55.2 3.5 24 35-58 28-51 (243)
369 3con_A GTPase NRAS; structural 95.8 0.004 1.4E-07 52.2 2.8 22 38-59 23-44 (190)
370 3iev_A GTP-binding protein ERA 95.8 0.0047 1.6E-07 57.3 3.4 22 38-59 12-33 (308)
371 2grj_A Dephospho-COA kinase; T 95.8 0.005 1.7E-07 53.5 3.3 23 37-59 13-35 (192)
372 2bme_A RAB4A, RAS-related prot 95.8 0.0041 1.4E-07 51.7 2.7 22 38-59 12-33 (186)
373 2efe_B Small GTP-binding prote 95.8 0.0045 1.5E-07 51.2 2.9 22 39-60 15-36 (181)
374 3u61_B DNA polymerase accessor 95.8 0.046 1.6E-06 50.2 10.1 44 150-195 105-149 (324)
375 1nrj_B SR-beta, signal recogni 95.8 0.0043 1.5E-07 53.4 2.8 23 38-60 14-36 (218)
376 3iby_A Ferrous iron transport 95.8 0.0045 1.5E-07 56.0 3.0 23 38-60 3-25 (256)
377 1ksh_A ARF-like protein 2; sma 95.8 0.0048 1.6E-07 51.5 3.0 25 36-60 18-42 (186)
378 2bov_A RAla, RAS-related prote 95.8 0.0045 1.5E-07 52.4 2.8 21 39-59 17-37 (206)
379 2xtp_A GTPase IMAP family memb 95.7 0.0048 1.7E-07 55.1 3.1 23 38-60 24-46 (260)
380 1vg8_A RAS-related protein RAB 95.7 0.0047 1.6E-07 52.4 2.9 23 38-60 10-32 (207)
381 3cbq_A GTP-binding protein REM 95.7 0.0038 1.3E-07 53.4 2.3 22 38-59 25-46 (195)
382 1m7b_A RND3/RHOE small GTP-bin 95.7 0.0045 1.5E-07 51.9 2.7 21 39-59 10-30 (184)
383 2gf0_A GTP-binding protein DI- 95.7 0.0045 1.6E-07 52.1 2.7 22 38-59 10-31 (199)
384 4edh_A DTMP kinase, thymidylat 95.7 0.0061 2.1E-07 53.8 3.6 28 34-61 4-31 (213)
385 1a7j_A Phosphoribulokinase; tr 95.7 0.0028 9.7E-08 58.6 1.5 25 35-59 4-28 (290)
386 2f6r_A COA synthase, bifunctio 95.7 0.0051 1.8E-07 56.4 3.2 23 36-58 75-97 (281)
387 3tkl_A RAS-related protein RAB 95.7 0.0048 1.6E-07 51.8 2.8 22 39-60 19-40 (196)
388 2dby_A GTP-binding protein; GD 95.7 0.0044 1.5E-07 59.4 2.9 21 39-59 4-24 (368)
389 2gf9_A RAS-related protein RAB 95.7 0.0049 1.7E-07 51.8 2.8 23 38-60 24-46 (189)
390 3t5d_A Septin-7; GTP-binding p 95.7 0.0045 1.5E-07 56.2 2.7 22 39-60 11-32 (274)
391 1jbk_A CLPB protein; beta barr 95.7 0.0063 2.2E-07 50.2 3.4 26 35-60 42-67 (195)
392 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0051 1.7E-07 51.0 2.8 21 38-58 7-27 (186)
393 3kkq_A RAS-related protein M-R 95.7 0.0051 1.8E-07 51.1 2.8 21 39-59 21-41 (183)
394 2qmh_A HPR kinase/phosphorylas 95.7 0.011 3.6E-07 52.3 4.9 35 24-59 23-57 (205)
395 2fg5_A RAB-22B, RAS-related pr 95.7 0.005 1.7E-07 52.1 2.7 21 39-59 26-46 (192)
396 3v9p_A DTMP kinase, thymidylat 95.7 0.005 1.7E-07 55.1 2.8 28 33-60 22-49 (227)
397 1sky_E F1-ATPase, F1-ATP synth 95.6 0.0027 9.3E-08 62.9 1.1 42 25-67 141-182 (473)
398 2wsm_A Hydrogenase expression/ 95.6 0.0055 1.9E-07 52.9 3.0 23 37-59 31-53 (221)
399 1zbd_A Rabphilin-3A; G protein 95.6 0.0061 2.1E-07 51.7 3.2 22 39-60 11-32 (203)
400 3be4_A Adenylate kinase; malar 95.6 0.0062 2.1E-07 53.2 3.2 24 35-58 4-27 (217)
401 3euj_A Chromosome partition pr 95.6 0.02 6.9E-07 56.8 7.3 73 128-205 375-464 (483)
402 4dhe_A Probable GTP-binding pr 95.6 0.0033 1.1E-07 54.2 1.4 24 37-60 30-53 (223)
403 3a1s_A Iron(II) transport prot 95.6 0.0061 2.1E-07 55.2 3.2 23 38-60 7-29 (258)
404 3t5g_A GTP-binding protein RHE 95.6 0.0054 1.8E-07 50.9 2.7 21 38-58 8-28 (181)
405 2o52_A RAS-related protein RAB 95.6 0.0061 2.1E-07 52.0 3.1 22 38-59 27-48 (200)
406 1e4v_A Adenylate kinase; trans 95.6 0.0064 2.2E-07 52.8 3.2 21 38-58 2-22 (214)
407 1zj6_A ADP-ribosylation factor 95.6 0.0063 2.2E-07 51.0 3.0 22 38-59 18-39 (187)
408 2h57_A ADP-ribosylation factor 95.6 0.0047 1.6E-07 51.9 2.2 23 38-60 23-45 (190)
409 2il1_A RAB12; G-protein, GDP, 95.6 0.0058 2E-07 51.7 2.8 21 39-59 29-49 (192)
410 3i8s_A Ferrous iron transport 95.6 0.006 2.1E-07 55.6 3.1 23 38-60 5-27 (274)
411 3oes_A GTPase rhebl1; small GT 95.6 0.0055 1.9E-07 52.2 2.7 23 38-60 26-48 (201)
412 3cnl_A YLQF, putative uncharac 95.6 0.0068 2.3E-07 55.2 3.4 30 37-66 100-129 (262)
413 3lv8_A DTMP kinase, thymidylat 95.6 0.0072 2.5E-07 54.4 3.5 27 35-61 26-52 (236)
414 1z06_A RAS-related protein RAB 95.6 0.0061 2.1E-07 51.2 2.9 22 38-59 22-43 (189)
415 2a5j_A RAS-related protein RAB 95.6 0.006 2.1E-07 51.4 2.8 22 39-60 24-45 (191)
416 2cjw_A GTP-binding protein GEM 95.5 0.006 2.1E-07 52.0 2.8 20 39-58 9-28 (192)
417 3bwd_D RAC-like GTP-binding pr 95.5 0.0062 2.1E-07 50.3 2.8 22 38-59 10-31 (182)
418 3dz8_A RAS-related protein RAB 95.5 0.0058 2E-07 51.5 2.7 22 39-60 26-47 (191)
419 4tmk_A Protein (thymidylate ki 95.5 0.0078 2.7E-07 53.2 3.6 27 35-61 2-28 (213)
420 1ltq_A Polynucleotide kinase; 95.5 0.0071 2.4E-07 55.1 3.4 22 37-58 3-24 (301)
421 4bas_A ADP-ribosylation factor 95.5 0.0064 2.2E-07 51.1 2.9 22 38-59 19-40 (199)
422 1x3s_A RAS-related protein RAB 95.5 0.0065 2.2E-07 50.8 2.8 22 38-59 17-38 (195)
423 1jwy_B Dynamin A GTPase domain 95.5 0.0072 2.5E-07 55.4 3.3 23 38-60 26-48 (315)
424 3reg_A RHO-like small GTPase; 95.5 0.0065 2.2E-07 51.2 2.8 22 38-59 25-46 (194)
425 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0061 2.1E-07 51.9 2.7 22 38-59 10-31 (206)
426 2ew1_A RAS-related protein RAB 95.5 0.0061 2.1E-07 52.5 2.7 22 38-59 28-49 (201)
427 2h17_A ADP-ribosylation factor 95.5 0.0061 2.1E-07 50.9 2.6 22 38-59 23-44 (181)
428 2iwr_A Centaurin gamma 1; ANK 95.5 0.0054 1.9E-07 50.7 2.2 21 39-59 10-30 (178)
429 2atv_A RERG, RAS-like estrogen 95.5 0.0068 2.3E-07 51.3 2.9 22 38-59 30-51 (196)
430 2qu8_A Putative nucleolar GTP- 95.5 0.0069 2.4E-07 52.9 3.0 22 38-59 31-52 (228)
431 1zd9_A ADP-ribosylation factor 95.5 0.0068 2.3E-07 51.0 2.8 22 38-59 24-45 (188)
432 3cph_A RAS-related protein SEC 95.4 0.0068 2.3E-07 51.6 2.8 22 38-59 22-43 (213)
433 2f7s_A C25KG, RAS-related prot 95.4 0.0079 2.7E-07 51.6 3.2 22 39-60 28-49 (217)
434 2p5s_A RAS and EF-hand domain 95.4 0.0069 2.4E-07 51.5 2.8 24 37-60 29-52 (199)
435 1qvr_A CLPB protein; coiled co 95.4 0.013 4.6E-07 61.7 5.6 27 37-63 589-615 (854)
436 1ak2_A Adenylate kinase isoenz 95.4 0.0091 3.1E-07 52.7 3.6 25 35-59 15-39 (233)
437 3llu_A RAS-related GTP-binding 95.4 0.0087 3E-07 50.8 3.4 24 38-61 22-45 (196)
438 2q3h_A RAS homolog gene family 95.4 0.0081 2.8E-07 50.8 3.2 22 38-59 22-43 (201)
439 2j1l_A RHO-related GTP-binding 95.4 0.0081 2.8E-07 51.9 3.1 22 38-59 36-57 (214)
440 2fv8_A H6, RHO-related GTP-bin 95.3 0.0075 2.6E-07 51.7 2.7 23 38-60 27-49 (207)
441 3tmk_A Thymidylate kinase; pho 95.3 0.0098 3.4E-07 52.8 3.5 29 34-62 3-31 (216)
442 3pxi_A Negative regulator of g 95.3 0.029 9.9E-07 58.3 7.6 23 38-60 523-545 (758)
443 2h92_A Cytidylate kinase; ross 95.3 0.0085 2.9E-07 51.9 3.0 25 36-60 3-27 (219)
444 2ocp_A DGK, deoxyguanosine kin 95.3 0.01 3.5E-07 52.5 3.6 26 35-60 1-26 (241)
445 1gwn_A RHO-related GTP-binding 95.3 0.0076 2.6E-07 52.0 2.7 22 38-59 30-51 (205)
446 3zvl_A Bifunctional polynucleo 95.3 0.0085 2.9E-07 58.1 3.2 26 33-58 255-280 (416)
447 2p65_A Hypothetical protein PF 95.3 0.0084 2.9E-07 49.5 2.8 26 35-60 42-67 (187)
448 3c5c_A RAS-like protein 12; GD 95.3 0.0087 3E-07 50.5 2.9 22 38-59 23-44 (187)
449 2fu5_C RAS-related protein RAB 95.3 0.0056 1.9E-07 50.9 1.6 22 38-59 10-31 (183)
450 3ld9_A DTMP kinase, thymidylat 95.2 0.011 3.8E-07 52.8 3.6 28 34-61 19-46 (223)
451 2b6h_A ADP-ribosylation factor 95.2 0.0083 2.9E-07 50.9 2.7 22 38-59 31-52 (192)
452 2zts_A Putative uncharacterize 95.2 0.014 4.7E-07 51.0 4.1 59 147-205 132-206 (251)
453 2aka_B Dynamin-1; fusion prote 95.2 0.0085 2.9E-07 54.3 2.8 23 38-60 28-50 (299)
454 3d3q_A TRNA delta(2)-isopenten 95.2 0.01 3.4E-07 56.4 3.3 24 37-60 8-31 (340)
455 3def_A T7I23.11 protein; chlor 95.2 0.0097 3.3E-07 53.6 3.1 23 38-60 38-60 (262)
456 2gco_A H9, RHO-related GTP-bin 95.2 0.0089 3E-07 50.9 2.7 21 39-59 28-48 (201)
457 2atx_A Small GTP binding prote 95.2 0.0092 3.1E-07 50.2 2.7 22 38-59 20-41 (194)
458 2fh5_B SR-beta, signal recogni 95.2 0.012 4.2E-07 50.3 3.6 23 38-60 9-31 (214)
459 4djt_A GTP-binding nuclear pro 95.1 0.0054 1.8E-07 52.8 1.2 22 39-60 14-35 (218)
460 1h65_A Chloroplast outer envel 95.1 0.01 3.5E-07 53.6 3.0 23 38-60 41-63 (270)
461 1p5z_B DCK, deoxycytidine kina 95.1 0.0083 2.9E-07 53.9 2.4 28 33-60 21-48 (263)
462 2v3c_C SRP54, signal recogniti 95.1 0.0026 8.8E-08 62.3 -1.2 38 31-68 92-131 (432)
463 3exa_A TRNA delta(2)-isopenten 95.0 0.014 4.6E-07 55.1 3.7 25 36-60 3-27 (322)
464 2hf9_A Probable hydrogenase ni 95.0 0.011 3.9E-07 51.0 2.9 23 37-59 39-61 (226)
465 3umf_A Adenylate kinase; rossm 95.0 0.013 4.6E-07 52.0 3.3 26 32-57 25-50 (217)
466 2g3y_A GTP-binding protein GEM 95.0 0.014 4.6E-07 51.2 3.2 22 38-59 39-60 (211)
467 2orw_A Thymidine kinase; TMTK, 94.9 0.016 5.3E-07 49.8 3.5 52 149-205 75-137 (184)
468 2x77_A ADP-ribosylation factor 94.9 0.0082 2.8E-07 50.3 1.7 21 38-58 24-44 (189)
469 2hup_A RAS-related protein RAB 94.9 0.012 4.1E-07 50.3 2.7 22 38-59 31-52 (201)
470 2yc2_C IFT27, small RAB-relate 94.9 0.0053 1.8E-07 51.9 0.4 22 38-59 22-43 (208)
471 2r62_A Cell division protease 94.9 0.0029 9.8E-08 56.7 -1.4 28 30-59 40-67 (268)
472 3cpj_B GTP-binding protein YPT 94.8 0.013 4.5E-07 50.8 2.9 23 38-60 15-37 (223)
473 3crm_A TRNA delta(2)-isopenten 94.8 0.015 5.1E-07 54.9 3.4 24 37-60 6-29 (323)
474 3a8t_A Adenylate isopentenyltr 94.8 0.016 5.5E-07 55.0 3.6 26 35-60 39-64 (339)
475 4hlc_A DTMP kinase, thymidylat 94.8 0.017 6E-07 50.5 3.5 26 36-61 2-27 (205)
476 4gzl_A RAS-related C3 botulinu 94.8 0.013 4.5E-07 50.2 2.7 21 38-58 32-52 (204)
477 2orv_A Thymidine kinase; TP4A 94.8 0.066 2.3E-06 48.2 7.3 51 149-205 89-150 (234)
478 2j0v_A RAC-like GTP-binding pr 94.7 0.014 4.8E-07 49.8 2.7 22 38-59 11-32 (212)
479 3q3j_B RHO-related GTP-binding 94.7 0.015 5.2E-07 50.3 2.8 22 38-59 29-50 (214)
480 2chg_A Replication factor C sm 94.5 0.02 6.8E-07 48.3 3.1 44 149-194 101-144 (226)
481 3sr0_A Adenylate kinase; phosp 94.5 0.021 7.3E-07 50.1 3.3 21 38-58 2-22 (206)
482 3foz_A TRNA delta(2)-isopenten 94.4 0.023 7.9E-07 53.4 3.6 25 36-60 10-34 (316)
483 3p32_A Probable GTPase RV1496/ 94.3 0.017 5.7E-07 54.7 2.4 27 35-61 78-104 (355)
484 3tqf_A HPR(Ser) kinase; transf 94.2 0.054 1.9E-06 46.8 5.2 32 25-57 6-37 (181)
485 1wxq_A GTP-binding protein; st 94.1 0.024 8.3E-07 54.7 3.1 22 39-60 3-24 (397)
486 1puj_A YLQF, conserved hypothe 94.1 0.034 1.2E-06 51.0 4.0 25 37-61 121-145 (282)
487 3gj0_A GTP-binding nuclear pro 94.1 0.019 6.5E-07 49.5 2.1 20 39-58 18-38 (221)
488 1lw7_A Transcriptional regulat 94.1 0.024 8.3E-07 53.6 2.9 30 131-160 295-329 (365)
489 3th5_A RAS-related C3 botulinu 93.1 0.0095 3.2E-07 50.7 0.0 21 38-58 32-52 (204)
490 3l0i_B RAS-related protein RAB 93.9 0.0064 2.2E-07 51.7 -1.3 23 38-60 35-57 (199)
491 3eph_A TRNA isopentenyltransfe 93.9 0.033 1.1E-06 54.2 3.6 23 37-59 3-25 (409)
492 1d2n_A N-ethylmaleimide-sensit 93.8 0.033 1.1E-06 50.0 3.1 25 35-59 63-87 (272)
493 3gmt_A Adenylate kinase; ssgci 93.7 0.034 1.2E-06 49.9 3.1 21 38-58 10-30 (230)
494 2qby_B CDC6 homolog 3, cell di 93.7 0.038 1.3E-06 51.6 3.5 25 36-60 45-69 (384)
495 3uk6_A RUVB-like 2; hexameric 93.7 0.038 1.3E-06 51.4 3.5 28 35-62 69-96 (368)
496 1ofh_A ATP-dependent HSL prote 93.7 0.034 1.2E-06 50.1 3.1 25 36-60 50-74 (310)
497 3r7w_A Gtpase1, GTP-binding pr 93.7 0.043 1.5E-06 50.6 3.8 22 38-59 5-26 (307)
498 2hjg_A GTP-binding protein ENG 93.6 0.029 1E-06 54.4 2.7 22 38-59 5-26 (436)
499 2x2e_A Dynamin-1; nitration, h 93.6 0.024 8.2E-07 53.4 1.9 23 38-60 33-55 (353)
500 3hws_A ATP-dependent CLP prote 93.5 0.038 1.3E-06 51.9 3.1 26 35-60 50-75 (363)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.2e-59 Score=455.12 Aligned_cols=218 Identities=26% Similarity=0.401 Sum_probs=201.0
Q ss_pred cceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
++||+++||+|+|+++ ...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 4689999999999642 24699999999999999999999999999999999999999999999998753
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++|||+||++.+++.+||+||+.++...++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~ 181 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 469999999999999999999999888777777777888999999999976 6899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|++||||||||||||.++..++++|++++ +.|+|||++|||++++.. |||+++|++|++++.|++++++....
T Consensus 182 P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~ 256 (366)
T 3tui_C 182 PKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256 (366)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCC
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999997 459999999999999977 99999999999999999999987643
No 2
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4e-59 Score=432.01 Aligned_cols=225 Identities=28% Similarity=0.437 Sum_probs=201.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
+++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 568999999999987 6799999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+||.||+.+....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998766666555555567788999999975 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~~ 232 (321)
||||+||||.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++.+......+++.|.
T Consensus 171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~l~~~~~ 247 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 247 (256)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHH
T ss_pred eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999998779999999999999987 99999999999999999999876543345555554
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-59 Score=453.89 Aligned_cols=215 Identities=30% Similarity=0.486 Sum_probs=198.1
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~ 75 (321)
++|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. +
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 47999999999998 6799999999999999999999999999999999999999999999998642 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||||||++.+|+.+||+||+.|+....+.+.++.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 69999999999999999999998766555566666788899999999976 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||||||||+..+.++++.++++. +.|+|+|++|||++++.. ||||++|++|++++.|++++++....
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence 9999999999999999999887775 679999999999999977 99999999999999999999987643
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.1e-59 Score=454.47 Aligned_cols=214 Identities=26% Similarity=0.469 Sum_probs=201.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. ++||||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 6999999999998 6799999999999999999999999999999999999999999999998753 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+||.+||.||+.|+...++.+.++.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999888888777777888999999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||+||+..+.++++.|+++++ .|+|+|++|||++++.. ||||++|++|++++.|++++++....
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 999999999999999999975 49999999999999977 99999999999999999999987643
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.2e-59 Score=431.72 Aligned_cols=214 Identities=29% Similarity=0.439 Sum_probs=194.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 4 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred CceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 358999999999987 6799999999999999999999999999999999999999999999988542
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQR 140 (321)
+++||+||++.+++.+||.||+.+.. ..++.+..+.+++++++++.+++.. .++++.+||||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 35999999999999999999999854 3445555555667888999999964 589999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998779999999999999976 9999999999999999999887
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
+.
T Consensus 242 ~~ 243 (262)
T 1b0u_A 242 GN 243 (262)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.4e-59 Score=437.72 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=196.1
Q ss_pred CCCCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 1 ~~~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
|.+. +++|+++|++++|+++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 M~m~-~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 1 MSLE-DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp ---C-CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHH
T ss_pred CCCc-CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccccc
Confidence 4433 4589999999999753 4599999999999999999999999999999999999999999999998653
Q ss_pred -----CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 -----~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++. .+..+||+||+.+....++.+.++.+++++++++.+++.. .++++.+|||||||||+|||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 46999999973 3447899999999877667777777788899999999976 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++|++|||||||+||||.++..++++|++++ ++|+|||++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999997 569999999999999976 999999999999999999998654
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.7e-59 Score=431.72 Aligned_cols=213 Identities=27% Similarity=0.442 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~ 75 (321)
+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 47999999999987 6699999999999999999999999999999999999999999999998642 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+|||+||++.+++.+||+||+.+.. ..++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 5999999999999999999999864 3445555555667888999999975 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||||+||||.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++.+.
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999998779999999999999976 999999999999999999988654
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.5e-59 Score=422.49 Aligned_cols=207 Identities=32% Similarity=0.435 Sum_probs=189.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 2 AEILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred CcEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence 358999999999987 6799999999999999999999999999999999999999999999998642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+++||+||++.+++.+||.||+.+....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 359999999999999999999998766665555555667888999999975 68999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
++|||||||+|||+.++..++++|++++++|+|||++|||+++++.||++++|++|++++.|+
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999877999999999999985599999999999998875
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.8e-59 Score=424.16 Aligned_cols=211 Identities=27% Similarity=0.407 Sum_probs=187.8
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++||+++|+++. ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 589999999997421 3599999999999999999999999999999999999999999999998643
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHcCCcc-c-cCCCCccChHHHHHHHHHHHH
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNH-F-KRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~-~-~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++.+++.+||.||+.+..... ..+..+..+++.++++.+++.. . ++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 25999999999999999999999876543 3445556677888899999865 3 889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l 218 (321)
+++|++|||||||+||||.++.+++++|++++++ |+|||++|||++.++.|||+++|++|++++.++++++
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999754 9999999999997756999999999999999988765
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.2e-58 Score=445.15 Aligned_cols=217 Identities=24% Similarity=0.360 Sum_probs=200.2
Q ss_pred CCcceEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------C
Q psy106 4 KDKCAIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------K 75 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~ 75 (321)
+..++|+++|++|+| ++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 10 ~~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 87 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKR 87 (355)
T ss_dssp -CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGS
T ss_pred CCCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhC
Confidence 346789999999999 76 5699999999999999999999999999999999999999999999998653 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||||||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 79999999999999999999999877766666666778899999999976 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||||||||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++.+..
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999975 49999999999999976 9999999999999999999997654
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.3e-58 Score=428.96 Aligned_cols=211 Identities=25% Similarity=0.317 Sum_probs=191.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
.++|+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +.
T Consensus 9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 468999999999998 6799999999999999999999999999999999999999999999999753 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc------
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------ 149 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------ 149 (321)
+||+||++.+++.+||.||+.+....+. ..+.+++++++++.+++.. .++++.+|||||||||+|||||++
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 9999999998888999999988654332 2234567788899999875 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|++|||||||+||||.++.+++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 99999999999999999999999999999754 6899999999999976 99999999999999999998864
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-58 Score=420.83 Aligned_cols=213 Identities=26% Similarity=0.438 Sum_probs=190.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 3 ~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (240)
T 1ji0_A 3 SDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp CSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CCceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 4578999999999987 6799999999999999999999999999999999999999999999998653
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-Ccc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-LNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+++||+||++.+++.+||.||+.++.. ......+..+.++++++.++ +.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 249999999999999999999987532 12223344566777888884 754 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998789999999999999876 99999999999999999988754
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.6e-58 Score=442.97 Aligned_cols=214 Identities=30% Similarity=0.475 Sum_probs=198.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++||||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998653 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 999999999999999999877666666666778889999999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|++++.|++++++....
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999999999999975 49999999999999976 99999999999999999999987543
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-58 Score=427.52 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=189.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
++||+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 468999999999987 6799999999999999999999999999999999999999999999998653 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH--hC-----------CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI--YG-----------MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv 141 (321)
++||+||++.+++.+||.||+.+.... .+ ....+.+++++++++.+++.. .++++.+|||||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 599999999999999999999876432 12 222344567788999999975 6899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
+|||||+++|++|||||||+||||.+++.++++|++++++|+|||++|||++++.. |||+++|++|++++.|++++
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999998779999999999999976 99999999999999999888
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-58 Score=443.87 Aligned_cols=214 Identities=29% Similarity=0.428 Sum_probs=195.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++||||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998653 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999998765444444445567888999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++++...
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 999999999999999999975 49999999999999976 99999999999999999999987543
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-57 Score=441.07 Aligned_cols=214 Identities=28% Similarity=0.455 Sum_probs=198.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
||+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 6999999999987 6799999999999999999999999999999999999999999999988532
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++||||||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 160 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV 160 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999999877766666666778889999999976 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||||||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|++++++....
T Consensus 161 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence 999999999999999999999999975 49999999999999976 99999999999999999999987543
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-57 Score=443.11 Aligned_cols=213 Identities=28% Similarity=0.448 Sum_probs=190.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. ++||||
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998653 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999999998765555666666778889999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||+||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|++++++...
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999975 49999999999999976 9999999999999999999998754
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.8e-58 Score=440.95 Aligned_cols=213 Identities=29% Similarity=0.454 Sum_probs=196.5
Q ss_pred eEEEEeEEEEeCCCCCc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKLPY--VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~--iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++|+|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 6999999999987 67 99999999999999999999999999999999999999999999988532
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++||||||++.+|+.+||+||+.|+...++.+.++.+++++++++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 469999999999999999999998766555566666778889999999976 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
+|||||||+|||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++++..
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999974 49999999999999976 9999999999999999999998654
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.3e-57 Score=436.11 Aligned_cols=210 Identities=29% Similarity=0.451 Sum_probs=193.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||+++|++|+|++ + +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++||||
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 5899999999987 6 99999999999999999999999999999999999999999999998653 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+.. ++++++++.++++. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9999999999999999998766554332 66788899999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|+|||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++.+...
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 999999999999999999974 59999999999999976 99999999999999999999986543
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-57 Score=413.78 Aligned_cols=207 Identities=27% Similarity=0.398 Sum_probs=186.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||+++|++++|++ +|+|+||++++ |++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 5899999999975 59999999999 99999999999999999999999999999999998653 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+||+||+.+....++ ....+++++++++.+++.. .++++.+|||||||||+|||||+++|++||||||
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred cCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999999999987643322 1222566788899999965 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||+.+++.++++|+++++ +|+|||++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999975 49999999999999876 999999999999999999988654
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-56 Score=414.53 Aligned_cols=213 Identities=21% Similarity=0.311 Sum_probs=188.2
Q ss_pred eEEEEeEEEEeC-CCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEE
Q psy106 8 AIRVENAYKRHS-SKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~-~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig 78 (321)
||+++|++++|+ ++. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 699999999997 221 3599999999999999999999999999999999999999999999998653 5699
Q ss_pred EEcCCC-CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--c-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 79 FMPQQI-SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--H-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 79 ~v~Q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
|+||++ .+++.+||.||+.++...+ .+..+.+++++++++.+++. . .++++.+|||||||||+|||||+++|++|
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999996 4566789999998864332 22222345677889999997 6 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++...
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999998669999999999999976 999999999999999999888654
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.6e-55 Score=407.00 Aligned_cols=207 Identities=27% Similarity=0.373 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 7 CAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 7 ~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
+||+++|++++|+ + +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ .+++||+||++.
T Consensus 3 ~~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----~~~i~~v~q~~~ 76 (253)
T 2nq2_C 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----YQSIGFVPQFFS 76 (253)
T ss_dssp EEEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE----CSCEEEECSCCC
T ss_pred ceEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE----eccEEEEcCCCc
Confidence 4799999999998 6 67999999999999999999999999999999999999999999983 357999999999
Q ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 86 LYPEFTIDEMICYYGLIY-G---MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
+++.+||.||+.+....+ + ....+.+++++++++.+++.. .++++.+|||||||||+|||||+++|++|||||||
T Consensus 77 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 77 SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 998999999998864322 1 122334566788899999975 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 161 SGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||+.++..++++|++++++ |+|||++|||++++.. ||++++|++|+ ++.|+++++..
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999999866 9999999999999976 99999999999 99999988753
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.4e-56 Score=417.10 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=186.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 357999999999987 6799999999999999999999999999999999999999999999998542
Q ss_pred CeEEEEcCCCCC--CCCCCHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 KQLGFMPQQISL--YPEFTIDEMICYYGLI----YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ~~ig~v~Q~~~l--~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++.+ ++.+||+||+.+.... ++....+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 469999999754 3457999999875321 12222334566788899999975 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE--EEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI--LITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tI--il~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.+++.++++|++++++|+|| |++|||++++.. ||++++|++|++++.|+++++.+
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999997669999 999999999976 99999999999999999988754
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.7e-55 Score=404.42 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=180.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc----------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~----------~ 75 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 7999999999987 6799999999999999999999999999999999999 789999999998653 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH-hC--CCHHHHHHHHHHHHHHcCCc-c-ccCCCCc-cChHHHHHHHHHHHHhc
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI-YG--MSLQQIKEKAEYLQALLHLN-H-FKRKCGS-LSGGQQRRVSLAITLLH 149 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~--~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~-LSgGqkQRv~iA~aL~~ 149 (321)
.++|+||++.+++.+|+.||+.+.... .+ ....+..+++.++++.++++ . .++++++ |||||||||+|||||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999876532 22 23334456678889999993 4 6889999 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~ 216 (321)
+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999997679999999999999976 4999999999999999887
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-54 Score=403.34 Aligned_cols=212 Identities=19% Similarity=0.302 Sum_probs=185.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~--------- 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.+.
T Consensus 18 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp --CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 468999999999987 6799999999999999999999999999999999999 478999999998652
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHH-H---hC---CCHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHH
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGL-I---YG---MSLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSL 143 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~---~~---~~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~i 143 (321)
+.+||+||++.+++.+|+.||+.+... . ++ .+..+..++++++++.+++. . .++++. +|||||||||+|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 239999999999999999999986532 1 12 23344456778889999995 3 578887 599999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHHH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l~ 219 (321)
||||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999987679999999999999965 8999999999999999988763
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-54 Score=404.13 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
.+|+++||+++|++ ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999975 124599999999999999999999999999999999999999999999998653 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK-----EKAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
|||+||++.+++ .||.||+.++..... ...+.. ..+.++++.+ +++. .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999887 599999987532111 101111 1234556666 4543 57889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++|++|||||||+|||+.++..++++|+++++ +|+|||++|||++++..||++++|++|++++.|+++++...
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999864 59999999999999877999999999999999999988653
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.2e-54 Score=396.04 Aligned_cols=204 Identities=29% Similarity=0.456 Sum_probs=176.7
Q ss_pred eEEEEeEEEEe--CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 8 AIRVENAYKRH--SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y--~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
-|+++|++++| ++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++
T Consensus 7 ~~~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred ceeEEEEEEEeCCCC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 48999999999 34 5699999999999999999999999999999999999999999999998653 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA 144 (321)
|||+||++.+++ .||+||+.++. ..... +++.++++.+++.. .++++.+|||||||||+||
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~--~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLAN--PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTC--TTCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred EEEEeCCCcccc-ccHHHHHhccC--CCCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 999999999886 59999998752 11222 23344555555432 2456789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+++|++|||||||+|||+.++..++++|++++ +|+|||++|||+++++.||++++|++|++++.|+++++...
T Consensus 158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999985 69999999999999877999999999999999999988653
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.4e-54 Score=395.61 Aligned_cols=202 Identities=23% Similarity=0.333 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
+||+++|++++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+. +++
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 47999999986 3899999999999999999999999999999999999999 9999998653 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC----
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE---- 152 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~---- 152 (321)
||+||++.+++.+||.||+.+.. ..... ++++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~-~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQ-HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTC-SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred EEECCCCccCCCCcHHHHHHHhh-ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999998752 11111 456778889999975 688999999999999999999999999
Q ss_pred ---EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 153 ---LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 ---lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++.+
T Consensus 151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999998679999999999999966 99999999999999999988753
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-54 Score=395.51 Aligned_cols=204 Identities=24% Similarity=0.321 Sum_probs=177.5
Q ss_pred eEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
||+++|++++| ++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 1 ml~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE
Confidence 58999999999 45 5699999999999999999999999999999999999999999999998642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-c-----------cCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-F-----------KRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~-----------~~~~~~LSgGqkQRv~iA~ 145 (321)
||+||++.+|+ .||.||+.++.. ..... +.+.++++.+++.. . ++++.+|||||||||+|||
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAr 152 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE-GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT-SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc-CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHH
Confidence 99999999887 599999986421 11222 33455666666542 2 3456899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||+++|++|||||||+|||+.+++.+++.|++++ +|+|||++|||++++..|||+++|++|++++.|+++++..
T Consensus 153 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999987 6999999999999887799999999999999999988864
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.6e-53 Score=401.47 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=177.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
..|+++||+++|+++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 359999999999643 5699999999999999999999999999999999999999999999999764 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|||||++.+|+ .||+||+.++... ...++..+..+ ..++.+ +++. .+++..+|||||||||+|||||++
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 99999999885 5999999875322 12222222111 111111 2222 356778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++||||||||+||+.++..+++.|+++.+ ++|+|++||+++.+..||+|++|++|+|++.|+++++.+.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999864 7899999999999988999999999999999999998764
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-54 Score=387.64 Aligned_cols=198 Identities=22% Similarity=0.330 Sum_probs=173.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEc
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMP 81 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~ 81 (321)
..+|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||+|
T Consensus 8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 357999999999976 499999999999999999999999999999999999999999999999653 6799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
|++.+++.+||.||+.++...++.. .+ ++++.++++.++++..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~-~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVK-VN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCC-CC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCc-hH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 9999999999999999876554421 12 356777889999853378899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
|||+.++..++++|++++++|+|||++|||++++.. ||+++++ .|+|
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999997668999999999999987 8887644 3444
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.1e-53 Score=383.50 Aligned_cols=202 Identities=24% Similarity=0.303 Sum_probs=169.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.+|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.+
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSWI 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCcc
Confidence 47999999999963225699999999999999999999999999999999999999999999998 49999999998
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc------------cccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN------------HFKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~------------~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++. ||+||+.++.. ..... ....++..++. ..++++.+|||||||||+|||||+++|+++
T Consensus 81 ~~~-tv~enl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 81 MPG-TIKENIIFGVS---YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp CSB-CHHHHHHTTSC---CCHHH----HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred cCC-CHHHHhhccCC---cChHH----HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 885 99999987421 11111 11122222221 123456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.+++.+++.+ ++++ +|+|||++|||++++..||++++|++|++++.|+++++.+.
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999974 5554 48999999999999877999999999999999999988653
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.2e-52 Score=389.01 Aligned_cols=206 Identities=25% Similarity=0.338 Sum_probs=176.0
Q ss_pred ceEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
++|+++|++++|++.. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.+. ++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 5799999999997631 3599999999999999999999999999999999999987 89999998653 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA 144 (321)
|||+||++.+|+ .||+||+.+... .... +.+.++++.+++.. .++++.+|||||||||+||
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 95 IGIVPQDTILFN-ETIKYNILYGKL--DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcccc-cCHHHHHhccCC--CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 999999999886 599999987421 1222 22334444444321 2467889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+++|++|||||||+|||+.++..++++|+++++ |+|||++|||+++++.||++++|++|++++.|+++++...
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999999864 8999999999999877999999999999999999988653
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.6e-53 Score=386.80 Aligned_cols=205 Identities=23% Similarity=0.380 Sum_probs=171.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+|+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWI- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCC-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcC-
Confidence 6999999999973225699999999999999999999999999999999999999999999998 49999999875
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHH--HHHHHcCCc------cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAE--YLQALLHLN------HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~~l~------~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+.+|+.||+.++... .....++..+ .+.+.+++. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 78 ~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 78 QNDSLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp CSEEHHHHHHTTSCC---CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred CCcCHHHHhhCcccc---CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 578999999875321 1111111111 112222221 14678999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH---HHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLL---YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~---~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||+.++..+++.+. +++ +|+|||++|||++++..||++++|++|++++.|+++++.+.
T Consensus 155 ts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 155 LSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp TTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999995 333 58999999999999877999999999999999999988653
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.9e-53 Score=390.61 Aligned_cols=203 Identities=24% Similarity=0.326 Sum_probs=180.8
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc------cCeEE-
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS------KKQLG- 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~------~~~ig- 78 (321)
||+++|++++|++. .+.+|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.+ .+++|
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 58999999999751 1359999999999 9999999999999999999999999 999999999854 24799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|+||++.+ .+|+.||+.++...+... ++++.++++.+++. . .++++.+|||||||||+|||||+++|++|||
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999987 789999999876544222 34567788889997 6 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cC-EEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SH-MIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~d-rv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+|||+.+++.+++.|+++++ |||++|||++++.. || ++++|++|++++.|+++++.+.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred ECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 999999999999999999998754 99999999999976 99 9999999999999999988753
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-52 Score=404.62 Aligned_cols=208 Identities=20% Similarity=0.274 Sum_probs=182.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
...|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+. ++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999994322679999999999999999999999999999999999998 899999999753 57
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCc-----------cChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGS-----------LSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~-----------LSgGqkQRv~iA 144 (321)
+|||||++.+|+ +||+||+.+.. ... ++++.++++.+++.. .++++.+ |||||||||+||
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred EEEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 999999999997 69999996421 112 245667888889875 6788887 999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||+++|++|||||||||||+..+.++++.|+++. .++|+|++|||++.+..|||+++|++|+|++.|++++++....
T Consensus 168 RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~ 245 (390)
T 3gd7_A 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245 (390)
T ss_dssp HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCS
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999999999999999999999999999998764 5899999999987766699999999999999999999987644
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.2e-49 Score=406.26 Aligned_cols=208 Identities=26% Similarity=0.365 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.+|+++|++++|+++.+++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 36999999999975324699999999999999999999999999999999999999999999999653 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~ 145 (321)
||+||++.+|+. |++||+.++.. ...+. +++.++++..++++ .+++..+||||||||++|||
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 420 ALVSQNVHLFND-TIANNIAYAAE-GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred EEEcCCCccccc-cHHHHHhccCC-CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 999999999875 99999987531 12222 33444555555432 23456899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++|+++|||||||+||+.+++.+.+.|+++++ |+|+|++||+++.++.||++++|++|++++.|+++++.+.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999864 8999999999999988999999999999999999998754
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.2e-49 Score=406.19 Aligned_cols=208 Identities=26% Similarity=0.351 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.+|+++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 46999999999974324699999999999999999999999999999999999999999999999753 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~ 145 (321)
||+||++.+|+. |++||+.++.. ...+. +++.++++..++.+ .+++..+||||||||++|||
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 420 ALVSQNVHLFND-TVANNIAYART-EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTTT-SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred eEEccCCcCCCC-CHHHHHhccCC-CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999875 99999987531 12222 33444555554421 24567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++|+++|||||||+||+.+++.+.+.++++++ |+|+|++||+++.++.|||+++|++|++++.|+++++.+.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999999999999999999999999999865 8999999999999878999999999999999999998754
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-49 Score=406.34 Aligned_cols=210 Identities=27% Similarity=0.368 Sum_probs=178.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE
Confidence 5999999999965446799999999999999999999999999999999999999999999999764 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.++.. ....++..+..+ +.++.+ +++. .+++..+||||||||++|||||+++
T Consensus 421 ~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 421 AVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp EECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred EECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 99999999875 99999986431 122222222111 111111 2322 4678899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|||||||+||+.+++.+.+.++++. +|+|+|++||+++.+..|||+++|++|++++.|+++++.++
T Consensus 498 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999874 58999999999999988999999999999999999998764
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.5e-49 Score=403.71 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=176.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 5999999999986446799999999999999999999999999999999999999999999999763 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----------c-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----------H-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ....+ .+.+.++..++. . .+++..+||||||||++||||
T Consensus 419 ~v~Q~~~l~~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 419 LVQQDNILFSD-TVKENILLGRP--TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp EECSSCCCCSS-BHHHHHGGGCS--SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEeCCCccCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 99999999976 99999986421 12222 222333333321 1 234567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++||||||||||+.+++.+.+.++++. +++|+|++||+++.++.|||+++|++|++++.|+++++.++
T Consensus 492 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998885 47999999999999988999999999999999999998764
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.9e-49 Score=402.65 Aligned_cols=206 Identities=25% Similarity=0.381 Sum_probs=175.9
Q ss_pred EEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 9 IRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
|+++|++++|+++ .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999753 24699999999999999999999999999999999999999999999999753 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~ 145 (321)
|+||++.+|+ .|++||+.++.... +... +++.++++..++.+ .+++..+||||||||++|||
T Consensus 422 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 422 TVSQEPILFS-CSIAENIAYGADDPSSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp EECSSCCCCS-SBHHHHHHTTSSSTTTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred EEccCCcccC-CCHHHHHhhcCCCccccCH----HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 9999999987 49999998753211 1222 33455556555421 23345899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||+++|+++|||||||+||+.+++.+.+.|+++++ |+|+|++||+++.++.|||+++|++|++++.|+++++.+
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999876 899999999999997899999999999999999998864
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.5e-49 Score=370.84 Aligned_cols=197 Identities=24% Similarity=0.316 Sum_probs=154.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++|+++|+++.+ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~ 109 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSW 109 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCC
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCc
Confidence 3579999999863 4599999999999999999999999999999999999999999999987 5999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+++. |++||+. .. ..... .....++..++.. .++++.+|||||||||+|||||+++|++
T Consensus 110 l~~~-tv~enl~-~~---~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 110 IMPG-TIKENII-GV---SYDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp CCSS-BHHHHHH-TT---CCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred cCcc-cHHHHhh-Cc---ccchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 8885 9999997 32 11111 1122223333311 2345689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||||+|||+.++..+++.+ ++++ +|+|||++|||++++..||++++|++|++++.|+++++..
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999974 4554 5899999999999987799999999999999999998854
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-49 Score=402.76 Aligned_cols=205 Identities=25% Similarity=0.401 Sum_probs=175.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 354 ~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred eEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 59999999999753 5699999999999999999999999999999999999999999999999764 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-c-----------cCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-F-----------KRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~-----------~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+ .|++||+.++.. ..+.++ +.++++..++.. . +++..+||||||||++||||
T Consensus 433 ~v~Q~~~lf~-~tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 433 IVLQDTILFS-TTVKENLKYGNP--GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp EECTTCCCCS-SBHHHHHHSSST--TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 9999999886 599999986421 122222 223333333321 1 23347899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+.+++.+.+.++++. +|+|+|++||+++.++.||++++|++|++++.|+++++.++
T Consensus 506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999985 58999999999999988999999999999999999998764
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-45 Score=378.25 Aligned_cols=204 Identities=23% Similarity=0.278 Sum_probs=179.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|+++.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .++||+||++.
T Consensus 355 ~~~l~~~~l~~~~~~--~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----~~i~~v~Q~~~ 427 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS--F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----LTVAYKPQYIK 427 (607)
T ss_dssp CEEEEECCEEEECSS--C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----CCEEEECSSCC
T ss_pred ceEEEEeceEEEecc--e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----eEEEEEecCcc
Confidence 468999999999986 3 6999999999999999999999999999999999999999999862 56999999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
+++.+||.|++....... ....+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 428 ~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD 503 (607)
T 3bk7_A 428 AEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503 (607)
T ss_dssp CCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred CCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCC
Confidence 878899999886541110 011245667888888865 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHHh
Q psy106 165 PVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLLE 220 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~~ 220 (321)
+.++..++++|++++ ++|+|||++|||++++.. |||+++|++ |++.+.|+|+++.+
T Consensus 504 ~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 504 VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999987 579999999999999977 999999986 88888999988764
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-45 Score=374.12 Aligned_cols=203 Identities=23% Similarity=0.291 Sum_probs=178.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|+++.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .++||+||++.
T Consensus 285 ~~~l~~~~l~~~~~~--~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~----~~i~~v~Q~~~ 357 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--F-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD----LTVAYKPQYIK 357 (538)
T ss_dssp CEEEEECCEEEEETT--E-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC----CCEEEECSSCC
T ss_pred CeEEEEeeEEEEECC--E-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC----ceEEEEecCCc
Confidence 468999999999976 3 6999999999999999999999999999999999999999999862 46999999998
Q ss_pred CCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy106 86 LYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 86 l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL 163 (321)
.++.+||.|++.... .... ..+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 358 ~~~~~tv~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~L 432 (538)
T 1yqt_A 358 ADYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYL 432 (538)
T ss_dssp CCCSSBHHHHHHHHHHHHHT-----CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC
T ss_pred CCCCCcHHHHHHhhhccCCC-----HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 778899998876531 1111 1245667788888865 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~~ 220 (321)
|+.++.+++++|++++ +.|.|||++|||++++.. |||+++|++ |++.+.|+++++.+
T Consensus 433 D~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 433 DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999987 469999999999999976 999999996 78888999988764
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.2e-45 Score=367.77 Aligned_cols=205 Identities=20% Similarity=0.223 Sum_probs=175.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|+++.|++ . .|++.||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +.++|+||+..
T Consensus 267 ~~~l~~~~l~~~~~~--~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---~~i~~~~q~~~ 340 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--F-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK---QILSYKPQRIF 340 (538)
T ss_dssp CEEEEECCEEEEETT--E-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC---CCEEEECSSCC
T ss_pred cceEEEcceEEEECC--E-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---eeeEeechhcc
Confidence 467999999999986 3 68889999999999999999999999999999999999999999765 46999999987
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
....+||.||+.+..... ... ....++++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 341 ~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 341 PNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp CCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred cccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 777889999987632111 111 1234566777888865 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHH
Q psy106 165 PVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLL 219 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~ 219 (321)
+.++.+++++|++++ +.|+|||++|||++++.. ||||++|++ |.....+++.++.
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999997 469999999999999987 999999986 5666667766553
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.1e-45 Score=403.22 Aligned_cols=208 Identities=25% Similarity=0.402 Sum_probs=178.6
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++||+++|+++ ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.+. ++|
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 49999999999753 24699999999999999999999999999999999999999999999999864 679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-cc----CCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-FK----RKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-~~----~~~~~LSgGqkQRv~iA~ 145 (321)
+||||+|.+|+. |++||+.|+......+.++ +.++++..++ +. +| ....+||||||||+||||
T Consensus 1156 ~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1156 AIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp EEECSSCCCCSE-EHHHHHSSSSCTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred EEECCCCEeeCc-cHHHHHhccCCCCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 999999999976 9999998653222233333 3334444443 11 23 345679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++|++||||||||+||+++.+.+.+.|+++. +|+|+|+++|.++.+..||||++|++|+|++.|++++++++
T Consensus 1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998764 58999999999999999999999999999999999999865
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.5e-44 Score=393.15 Aligned_cols=210 Identities=23% Similarity=0.385 Sum_probs=177.5
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 49999999999753 24699999999999999999999999999999999999999999999999763 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHcC--Ccc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALLH--LNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~~--l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|||||++.+|+. |++||+.++.. ....++..+..+ +.++.+. ++. ...+..+||||||||++|||||++
T Consensus 467 ~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 467 GVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp EEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 999999999976 99999987532 223333322221 1222221 111 345677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++||||||||+||+.+.+.+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998764 58999999999999988999999999999999999998764
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-44 Score=395.58 Aligned_cols=212 Identities=26% Similarity=0.396 Sum_probs=175.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 59999999999753 23699999999999999999999999999999999999999999999999763 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHc-CCcc-----ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL--QALL-HLNH-----FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l--l~~~-~l~~-----~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|||||++.+|+ .|++||+.++......+.++..+..+.. .+.. .++. ......+|||||||||+|||||++
T Consensus 1110 ~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1110 GIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp EEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 99999998875 6999999865322223333332222111 1111 1111 234557899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++|||||||+|||+.+++.+.+.|+++ .+|+|+|++|||++++..||||++|++|++++.|+++++.++
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999875 458999999999999977999999999999999999999765
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-43 Score=386.63 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=177.7
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. .+++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 49999999999753 35799999999999999999999999999999999999999999999999764 479
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------c-cccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------N-HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~-~~~~~~~~LSgGqkQRv~iA~ 145 (321)
|||||+|.+|+. |++||+.|+.. ..+.++. .++++..++ + ....+..+||||||||++|||
T Consensus 495 ~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~~v----~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 495 AVVSQEPALFNC-TIEENISLGKE--GITREEM----VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIAR 567 (1321)
T ss_dssp EEECSSCCCCSE-EHHHHHHTTCT--TCCHHHH----HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHH
T ss_pred cccCCcceeeCC-chhHHHhhhcc--cchHHHH----HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHH
Confidence 999999999875 99999987531 1233333 333333322 1 123556789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++|++||||||||+||+.+.+.+.+.|.++. +|+|+|++||++..+..||+|++|++|+|++.|+.+++.++
T Consensus 568 Al~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT
T ss_pred HHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh
Confidence 9999999999999999999999999999998875 58999999999999999999999999999999999999764
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-43 Score=358.80 Aligned_cols=201 Identities=19% Similarity=0.243 Sum_probs=171.1
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKS-----TIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~G-----ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
++++++|++. ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+.. ....++|+||+...
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----~~~~i~~~~q~~~~ 424 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI----PKLNVSMKPQKIAP 424 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----CSCCEEEECSSCCC
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----cCCcEEEecccccc
Confidence 5677888753 35899999999999 78999999999999999999999999999731 23569999999876
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
....|+.+++... ..+... ..+.+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 425 ~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 425 KFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp CCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred cCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 6677999987532 111111 1234566788888865 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHHhh
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLLEK 221 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~~~ 221 (321)
.++..++++|++++ +.|+|||++|||++++.. |||+++|++ |++++.|+|+++++.
T Consensus 501 ~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 501 EQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999986 569999999999999987 999999996 899999999998764
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.4e-43 Score=358.89 Aligned_cols=189 Identities=25% Similarity=0.354 Sum_probs=160.9
Q ss_pred eEEE--------EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE---------EEC
Q psy106 8 AIRV--------ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI---------HLS 70 (321)
Q Consensus 8 ~I~v--------~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I---------~~~ 70 (321)
+|++ +|++++|++. ..+|+++| ++++||++||+||||||||||+|+|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 5888 8999999872 24899999 999999999999999999999999999999999995 344
Q ss_pred Ccc-----------cCeEEEEcCCCCCCC---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccCh
Q psy106 71 ITS-----------KKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSG 135 (321)
Q Consensus 71 g~~-----------~~~ig~v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSg 135 (321)
|.. ...+++++|....++ ..|+.||+.. ... .++++++++.+++.. .++++.+|||
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~~-----~~~~~~~L~~lgL~~~~~~~~~~LSG 231 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VDE-----VGKFEEVVKELELENVLDRELHQLSG 231 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TCC-----SSCHHHHHHHTTCTTGGGSBGGGCCH
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----hHH-----HHHHHHHHHHcCCCchhCCChhhCCH
Confidence 532 135889998754322 1389998853 111 134567888899875 6899999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
||||||+|||||+++|++|||||||++||+.++..++++|++++++|+|||++|||++++.. |||+++|+++
T Consensus 232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999999999999998779999999999999977 9999999864
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.5e-43 Score=353.45 Aligned_cols=188 Identities=24% Similarity=0.336 Sum_probs=157.6
Q ss_pred EEE-EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE---------EECCccc----
Q psy106 9 IRV-ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI---------HLSITSK---- 74 (321)
Q Consensus 9 I~v-~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I---------~~~g~~~---- 74 (321)
-++ +|++|+|++. ..+++++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|...
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 455 6899999872 24899999 999999999999999999999999999999999995 3444321
Q ss_pred -------CeEEEEcCCCCCCCC---CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPE---FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~i 143 (321)
..+++++|...+++. .|+.|++... . ..++++++++.+++.. .++++.+|||||||||+|
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 358899997654332 3888877521 1 1234667888899875 689999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
||||+.+|++|||||||++||+.++..++++|++++++|+|||++|||++++.. |||+++|++|
T Consensus 170 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999998789999999999999977 9999999864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.1e-42 Score=366.75 Aligned_cols=204 Identities=21% Similarity=0.269 Sum_probs=166.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.+||+++|++++|++..+++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++. .++||++|++.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~~ 746 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHAF 746 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccchh
Confidence 4689999999999753246999999999999999999999999999999999999999999999864 36999999752
Q ss_pred ----CCCCCCHHHHHHHHHHH-----------------------------------------------------------
Q psy106 86 ----LYPEFTIDEMICYYGLI----------------------------------------------------------- 102 (321)
Q Consensus 86 ----l~~~ltv~e~l~~~~~~----------------------------------------------------------- 102 (321)
...+.|+.+++.+....
T Consensus 747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 12245777776542100
Q ss_pred ------------------------------------------hCCCHHHHHHHHHHHHHHcCCcc---ccCCCCccChHH
Q psy106 103 ------------------------------------------YGMSLQQIKEKAEYLQALLHLNH---FKRKCGSLSGGQ 137 (321)
Q Consensus 103 ------------------------------------------~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~LSgGq 137 (321)
.+......+++++++++.+++.. .++++++|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 00000001245677888999963 478899999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
||||+|||||+++|++|||||||+|||+.++..+++.|+++ |.|||++|||++++.. |||+++|++|+++..|+
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999888654 6799999999999976 99999999999987664
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.7e-42 Score=356.08 Aligned_cols=198 Identities=18% Similarity=0.326 Sum_probs=143.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCc-------cEEEECCcc-
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLL---------------------SCITGQNVLNG-------GNIHLSITS- 73 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl---------------------~~l~Gl~~p~~-------G~I~~~g~~- 73 (321)
..+|+||||+|++||++||+||||||||||+ +++.|+.+|+. |.|.+++..
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5699999999999999999999999999998 89999999984 455555543
Q ss_pred ----cCeEEEEcCCCCC-------------------CCCCCHHHHHHHHHHHhCC--CHHH-------HHHHHHHHHHHc
Q psy106 74 ----KKQLGFMPQQISL-------------------YPEFTIDEMICYYGLIYGM--SLQQ-------IKEKAEYLQALL 121 (321)
Q Consensus 74 ----~~~ig~v~Q~~~l-------------------~~~ltv~e~l~~~~~~~~~--~~~~-------~~~~~~~ll~~~ 121 (321)
.+.+|+++|.+.+ ++.+|+.||+.+....... .... ..++ ..+++.+
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 189 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHHT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHc
Confidence 1456666665432 3567999999874322110 0000 0111 1347778
Q ss_pred CCcc--ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 122 HLNH--FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 122 ~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++.. .++++.+|||||||||+|||||+++|+ +|||||||+||||.++..++++|++++++|.|||+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 8864 588999999999999999999999998 999999999999999999999999998889999999999998877
Q ss_pred cCEEEEE------eCCEEEEecChhHHHhh
Q psy106 198 SHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 198 ~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
|||+++| ++|++++.|+++++.+.
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 9999999 89999999999998754
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.3e-40 Score=354.42 Aligned_cols=193 Identities=20% Similarity=0.245 Sum_probs=166.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---cCeEEEEcCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---KKQLGFMPQQI 84 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---~~~ig~v~Q~~ 84 (321)
.|...|++++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+| |+| +|.+ ..+++|++|++
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~ 504 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDI 504 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCC
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccc
Confidence 4777799999988 679999999999999999999999999999999994 332 2221 13579999985
Q ss_pred -CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 85 -SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 85 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
.+++.+|+.||+.+ ...+. ++++.++++.+++. . .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 505 ~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 505 DGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp CCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred cccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 67888999999975 11221 45677888999994 3 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHHh
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLLE 220 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~~ 220 (321)
|||+.++..++++|++ .|.|||++|||++++.. |||+++|++|+++ +.|+++++..
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999987 58999999999999977 9999999999997 6899988754
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.4e-39 Score=336.88 Aligned_cols=192 Identities=24% Similarity=0.390 Sum_probs=149.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCccEEEECCcccC-----
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT----------------------GQNVLNGGNIHLSITSKK----- 75 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~----------------------Gl~~p~~G~I~~~g~~~~----- 75 (321)
..+|+|+||+|++||++||+||||||||||+++|+ |+..+ +|.+.+++.+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998754 44333 346666543210
Q ss_pred ---------------------------------------------eEEEEcCCCCCCC----------------------
Q psy106 76 ---------------------------------------------QLGFMPQQISLYP---------------------- 88 (321)
Q Consensus 76 ---------------------------------------------~ig~v~Q~~~l~~---------------------- 88 (321)
..|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1234444333322
Q ss_pred ----------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCC---E
Q psy106 89 ----------EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPE---L 153 (321)
Q Consensus 89 ----------~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~---l 153 (321)
.+|+.||+.+.... .. .++..+.++.+++.. .++++.+|||||||||+|||||+++|+ +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~-----~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l 567 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI-----PK-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL 567 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC-----HH-HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh-----hh-HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence 47889998765321 11 233445666777753 578999999999999999999999874 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
|||||||+||||.++.+++++|++++++|+|||++|||++++..|||+++| ++|++++.|+++++.+.
T Consensus 568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 999999999999999999999999988899999999999998779999999 89999999999998653
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-39 Score=327.87 Aligned_cols=188 Identities=20% Similarity=0.295 Sum_probs=147.8
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCccc-------
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-----------LSITSK------- 74 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~------- 74 (321)
|++++|+.. ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|...
T Consensus 82 ~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 467889763 34677777 6999999999999999999999999999999999983 223211
Q ss_pred --Ce--EEEEcCCCCC------CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHH
Q psy106 75 --KQ--LGFMPQQISL------YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 --~~--ig~v~Q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~i 143 (321)
+. ..+.+|.... .+..++.+++.. ... ...++++++++.+++.. .++++.+|||||||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----RME---KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----HCC---SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----hhh---hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 11 2233443211 111244444332 111 11255777889999975 789999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
||||+++|++|||||||++||+.++..++++|++++++|+|||++|||++++.. |||+++|++|..
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999998889999999999999987 999999997653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.2e-39 Score=325.97 Aligned_cols=183 Identities=20% Similarity=0.320 Sum_probs=147.6
Q ss_pred EeEEEEeCCCCCceeeeeeEEE-eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE-----------EECCccc-----
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTV-QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI-----------HLSITSK----- 74 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i-~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I-----------~~~g~~~----- 74 (321)
++.+.+||.+ .++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.+.
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3578899863 466666754 4999999999999999999999999999999998 4555432
Q ss_pred ------CeEEEEcCCC----CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHH
Q psy106 75 ------KQLGFMPQQI----SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 ------~~ig~v~Q~~----~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~i 143 (321)
..+...+|.. .++. .++.+++... . .+++++++++.+++.. .++++.+|||||||||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~i 149 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----D-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLV 149 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----C-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc----h-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 1344445443 2332 3777765311 1 1134566788889875 689999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
||||+++|++|||||||++||+.++..++++|+++++ |+|||++|||++++.. ||++++|++|.
T Consensus 150 A~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 150 AASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999976 9999999999999977 99999998754
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6e-36 Score=317.68 Aligned_cols=193 Identities=22% Similarity=0.374 Sum_probs=153.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCC------cc------EEEECCccc-------
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLL---------SCITGQNVLN------GG------NIHLSITSK------- 74 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl---------~~l~Gl~~p~------~G------~I~~~g~~~------- 74 (321)
...|+|+||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..+.
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3479999999999999999999999999997 4444443332 22 122221110
Q ss_pred -------------------------------------------CeEEEEcCCCCCCC-----------------------
Q psy106 75 -------------------------------------------KQLGFMPQQISLYP----------------------- 88 (321)
Q Consensus 75 -------------------------------------------~~ig~v~Q~~~l~~----------------------- 88 (321)
+..|+++++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 12467777766554
Q ss_pred ---------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC---CEE
Q psy106 89 ---------EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP---ELL 154 (321)
Q Consensus 89 ---------~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P---~ll 154 (321)
.+|+.|++.|+... . ...+..++++.+++.. .++++.+|||||||||+|||||+++| ++|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~-----~-~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI-----P-SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC-----H-HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc-----h-hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 36777877764321 1 1245567888899864 57899999999999999999999876 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+..++.++++|++++++|.|||++|||++++..||+|++| ++|+|++.|+++++.+.
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999988899999999999999789999999 89999999999999764
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.4e-36 Score=319.96 Aligned_cols=202 Identities=24% Similarity=0.357 Sum_probs=160.1
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC-------CCCcc-------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-GQN-------VLNGG------------- 65 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~-Gl~-------~p~~G------------- 65 (321)
+.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 5789999852 2699999999999999999999999999999864 221 12233
Q ss_pred EEEECCccc----------------------------CeEEEEcCCCCCCC-----------------------------
Q psy106 66 NIHLSITSK----------------------------KQLGFMPQQISLYP----------------------------- 88 (321)
Q Consensus 66 ~I~~~g~~~----------------------------~~ig~v~Q~~~l~~----------------------------- 88 (321)
.|.+++.+. +.+||+||.+.+.+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 355654321 23578877544321
Q ss_pred -------------------------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHH
Q psy106 89 -------------------------EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 89 -------------------------~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv 141 (321)
.+|+.|++.++.. . . .. ++..++++.+++.. .++++.+|||||||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~-~-~~-~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv 854 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I-P-KI-KRKLETLYDVGLGYMKLGQPATTLSGGEAQRV 854 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C-H-HH-HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c-h-hH-HHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence 3566777665321 1 1 11 23456788899864 5889999999999999
Q ss_pred HHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEe
Q psy106 142 SLAITLLHDP---ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEE 212 (321)
Q Consensus 142 ~iA~aL~~~P---~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~ 212 (321)
+||+||+++| ++|||||||+|||+..+..++++|++++++|.|||++|||++++..|||+++| ++|++++.
T Consensus 855 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence 9999999875 99999999999999999999999999988899999999999998779999999 78999999
Q ss_pred cChhHHHhh
Q psy106 213 SPPKVLLEK 221 (321)
Q Consensus 213 g~~~~l~~~ 221 (321)
|+++++...
T Consensus 935 g~~~el~~~ 943 (972)
T 2r6f_A 935 GTPEEVAEV 943 (972)
T ss_dssp ESHHHHHTC
T ss_pred cCHHHHHhC
Confidence 999998754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4.2e-36 Score=316.50 Aligned_cols=207 Identities=22% Similarity=0.326 Sum_probs=157.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HHcCC-------CC---------------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-ITGQN-------VL--------------- 62 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~-l~Gl~-------~p--------------- 62 (321)
.+.|+++|+++ . +|+|+||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~---~----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 500 AGWLELNGVTR---N----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp SCEEEEEEEEE---T----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred CceEEEEeeee---c----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45799999975 1 5999999999999999999999999999997 76543 33
Q ss_pred ---Ccc-------EEEECCccc----------------------------CeEEEEcCCCC-------------------
Q psy106 63 ---NGG-------NIHLSITSK----------------------------KQLGFMPQQIS------------------- 85 (321)
Q Consensus 63 ---~~G-------~I~~~g~~~----------------------------~~ig~v~Q~~~------------------- 85 (321)
.+| .|.+++.+. +..||.++...
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 345 456665421 01123222111
Q ss_pred ---CC------------------------CCCCHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCc
Q psy106 86 ---LY------------------------PEFTIDEMICYYG----LIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGS 132 (321)
Q Consensus 86 ---l~------------------------~~ltv~e~l~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~ 132 (321)
++ ...++.|++.+.. .+.... .. .+++.++++.+++.. .++++.+
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~-~~-~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE-SA-IFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS-HH-HHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc-hH-HHHHHHHHHHcCCCcccccCCccc
Confidence 11 1234444442211 111111 11 245677889999965 4889999
Q ss_pred cChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE-----
Q psy106 133 LSGGQQRRVSLAITLLHD---PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM----- 204 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il----- 204 (321)
|||||||||+||++|+++ |++|||||||+|||+..+..++++|++++++|.|||++|||++++..|||+++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g 810 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAG 810 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCC
Confidence 999999999999999996 799999999999999999999999999988899999999999999669999999
Q ss_pred -eCCEEEEecChhHHHhh
Q psy106 205 -RKGILLEESPPKVLLEK 221 (321)
Q Consensus 205 -~~G~i~~~g~~~~l~~~ 221 (321)
++|++++.|+++++.+.
T Consensus 811 ~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 811 EDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp GGCCSEEEEECHHHHTTC
T ss_pred CCCCEEEEEcCHHHHHhC
Confidence 79999999999998654
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.2e-35 Score=315.46 Aligned_cols=202 Identities=24% Similarity=0.340 Sum_probs=157.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-c----CCC---CCccEE-----------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-G----QNV---LNGGNI----------- 67 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~-G----l~~---p~~G~I----------- 67 (321)
+.|+++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ | .+. +..|.+
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 5789999852 2699999999999999999999999999999863 2 121 234432
Q ss_pred --EECCccc----------------------------CeEEEEcCCCCCC----------------------C-------
Q psy106 68 --HLSITSK----------------------------KQLGFMPQQISLY----------------------P------- 88 (321)
Q Consensus 68 --~~~g~~~----------------------------~~ig~v~Q~~~l~----------------------~------- 88 (321)
.+++.+. +..||+||.+.+. +
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 2332111 2346777754331 1
Q ss_pred -------------------------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHH
Q psy106 89 -------------------------EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 89 -------------------------~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv 141 (321)
.+|+.|++.++.. . . .. ++..++++.+++.. .++++.+|||||||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~---~-~-~~-~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv 872 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP---I-A-GV-HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRV 872 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT---C-H-HH-HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc---c-h-HH-HHHHHHHHHcCCCcccccCccccCCHHHHHHH
Confidence 2456666654321 1 1 11 23456788889864 5789999999999999
Q ss_pred HHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEe
Q psy106 142 SLAITLLHDP---ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEE 212 (321)
Q Consensus 142 ~iA~aL~~~P---~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~ 212 (321)
+||+||+.+| ++|||||||+|||+..+..++++|++++++|.|||++|||++++..|||+++| ++|++++.
T Consensus 873 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 873 KLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp HHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEe
Confidence 9999999875 99999999999999999999999999988899999999999998779999999 68999999
Q ss_pred cChhHHHhh
Q psy106 213 SPPKVLLEK 221 (321)
Q Consensus 213 g~~~~l~~~ 221 (321)
|+++++...
T Consensus 953 G~~~el~~~ 961 (993)
T 2ygr_A 953 GTPEDVAAV 961 (993)
T ss_dssp ECHHHHHHC
T ss_pred cCHHHHHhC
Confidence 999998754
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-40 Score=328.04 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=159.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-E-EEECCcccCeEEEEcCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-N-IHLSITSKKQLGFMPQQ 83 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~-I~~~g~~~~~ig~v~Q~ 83 (321)
.+|++++|++++|+ ++||++++|++++|+||||||||||+|+|+|+.+|++| + |.++|...+.++|+||+
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 46788888888874 68999999999999999999999999999999999999 9 99998666789999999
Q ss_pred CC---CCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHH--HhcCCCE----
Q psy106 84 IS---LYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAIT--LLHDPEL---- 153 (321)
Q Consensus 84 ~~---l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~a--L~~~P~l---- 153 (321)
.. +++.+|+.||+ ++... .+... .+++..+++.+++..... +.+|||||||||+|||| |+.+|++
T Consensus 188 ~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sG 262 (460)
T 2npi_A 188 ISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSG 262 (460)
T ss_dssp CEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSC
T ss_pred hhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcce
Confidence 84 45567999888 54321 11111 123344566677754322 88999999999999999 9999999
Q ss_pred EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh------HHhh-cCE-----EEEEe-CCEEEEecChhHHH
Q psy106 154 LILDE-PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID------EAKK-SHM-----IGLMR-KGILLEESPPKVLL 219 (321)
Q Consensus 154 llLDE-PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~------~~~~-~dr-----v~il~-~G~i~~~g~~~~l~ 219 (321)
||||| ||++||+. ++.+.+++++ .++|+|++||+.+ ++.. ||| +++|+ +|+++ .|+++++.
T Consensus 263 LlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 263 CIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred EEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99999 99999999 5555555544 3789999999988 7766 999 99999 99999 99998774
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=2.4e-33 Score=272.79 Aligned_cols=187 Identities=19% Similarity=0.212 Sum_probs=138.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--------------------------------------CCcc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--------------------------------------LNGG 65 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--------------------------------------p~~G 65 (321)
.+++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 999999999999999999977664 4578
Q ss_pred EEEECCcccC----------eEEEEcCCCCCCCCCCHHHHHHHHHHHh----------------------CCCH------
Q psy106 66 NIHLSITSKK----------QLGFMPQQISLYPEFTIDEMICYYGLIY----------------------GMSL------ 107 (321)
Q Consensus 66 ~I~~~g~~~~----------~ig~v~Q~~~l~~~ltv~e~l~~~~~~~----------------------~~~~------ 107 (321)
++.++|.+.. .++++||+..++.. +..+...+.-... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999987642 38999999876543 4433332211000 0000
Q ss_pred --------------------------------HHHHHHHHHHHHHcCCcc------------------------cc----
Q psy106 108 --------------------------------QQIKEKAEYLQALLHLNH------------------------FK---- 127 (321)
Q Consensus 108 --------------------------------~~~~~~~~~ll~~~~l~~------------------------~~---- 127 (321)
....+.+...++.+++.. ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000111222233333211 00
Q ss_pred ---CCCCc-cChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 128 ---RKCGS-LSGGQQRRVSLAITLLHDP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 128 ---~~~~~-LSgGqkQRv~iA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
+++.+ ||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|++++ +|.|||++||+++.+..||++
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeE
Confidence 23333 6999999999999999999 9999999999999999999999999997 689999999999888779999
Q ss_pred EEE----eCCEEEEec
Q psy106 202 GLM----RKGILLEES 213 (321)
Q Consensus 202 ~il----~~G~i~~~g 213 (321)
++| ++|+++...
T Consensus 366 ~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 366 YKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCceEEEE
Confidence 999 999987653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.97 E-value=4.1e-32 Score=262.52 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=79.8
Q ss_pred cCCCCccChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQRRVSLAITLL------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++.+|||||||||+||+||+ .+|++|||||||+||||..+..++++|++++++|.|||++|||+++++.||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4688999999999999999999 7999999999999999999999999999998889999999999999767999
Q ss_pred EEEEeCCEEEE
Q psy106 201 IGLMRKGILLE 211 (321)
Q Consensus 201 v~il~~G~i~~ 211 (321)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999864
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=1.8e-32 Score=237.27 Aligned_cols=151 Identities=12% Similarity=0.073 Sum_probs=107.3
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC-CCCCHHHHHHHHHHHhCCC
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY-PEFTIDEMICYYGLIYGMS 106 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~-~~ltv~e~l~~~~~~~~~~ 106 (321)
|+||++++||+++|+||||||||||+|++.+ |...++... ..|+++|++.-. ..-++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~--~~g~~~~~~~~~~~~~~~~~~~---------- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDF--CRGLMSDDENDQTVTGAAFDVL---------- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHH--HHHHHCSSTTCGGGHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHH--HHHHhcCcccchhhHHHHHHHH----------
Confidence 6899999999999999999999999998653 211122111 126777765310 000111111
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHH
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV----------------IAEE 170 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~----------------~~~~ 170 (321)
.......+. .+...........|+|||||++||||++.+|++++|||||++||+. .+..
T Consensus 63 ----~~~~~~~~~-~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 63 ----HYIVSKRLQ-LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ 137 (171)
T ss_dssp ----HHHHHHHHH-TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 111222222 2333222234556999999999999999999999999999999999 6688
Q ss_pred HHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 171 i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
+++.+++++++|.|+|++|||+++++.++++
T Consensus 138 l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 138 MKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 9999988876699999999999999876654
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.97 E-value=2.9e-34 Score=257.63 Aligned_cols=145 Identities=23% Similarity=0.260 Sum_probs=103.1
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC------cccCeEEEEcCCCCCCCC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI------TSKKQLGFMPQQISLYPE 89 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g------~~~~~ig~v~Q~~~l~~~ 89 (321)
|+|++ +.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.... ...+++||+||++
T Consensus 8 k~~g~--~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 8 KTLGQ--KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp CSHHH--HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------
T ss_pred CCHhH--HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-----
Confidence 45666 5689996 89999999999999999999999999 99999985310 1125699999986
Q ss_pred CCHHHHH-HHHH----HHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 90 FTIDEMI-CYYG----LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 90 ltv~e~l-~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
.||+ .+.. ....... .+.++++++. ++ ||||||+|||||+.+|++|||||||+|
T Consensus 76 ---~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~lllLDEPts~-- 134 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFVILDEAQNT-- 134 (208)
T ss_dssp -------CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred ---HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 3444 2211 1111100 1233344433 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++..++++|+++ ++|+||| +|||+++++.
T Consensus 135 --~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 --TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp --CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred --cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 899999999988 6789999 9999988764
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=8.6e-30 Score=241.61 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=75.4
Q ss_pred ccCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 126 FKRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
.++++.+||+|||||++||+||+ .+|+++||||||++||+..+..++++|++++ +|.|||++||+++..+.||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 35678899999999999999997 6899999999999999999999999999984 589999999997655669986
Q ss_pred --EEEeCCEE-EEecChh
Q psy106 202 --GLMRKGIL-LEESPPK 216 (321)
Q Consensus 202 --~il~~G~i-~~~g~~~ 216 (321)
++|.+|.- +...+.+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 77888753 3334443
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.96 E-value=5.7e-33 Score=272.65 Aligned_cols=174 Identities=9% Similarity=0.095 Sum_probs=140.6
Q ss_pred CceeeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcC
Q psy106 23 PYVLDKLCMTVQKST--------------------IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 23 ~~iL~~isl~i~~Ge--------------------i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
+.+|+++||++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+..+.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999999999999999999999998865434489999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChH--HHHHHHHHHHHhc----------C
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG--QQRRVSLAITLLH----------D 150 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG--qkQRv~iA~aL~~----------~ 150 (321)
++ .++++|+.|++.+.. . +..++++++.+++...+..+. ||+| ||||++||+||++ +
T Consensus 116 ~~-~~~~ltv~D~~g~~~---~------~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS---T------NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp CS-SCTTEEEEECCCGGG---S------SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cc-ccCCeeehHhhcccc---h------HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 85 577889888765431 1 123556777777765444444 9999 9999999999999 9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----ceEEEecCChhH--Hhh-cCEEE-EEeCC
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLA-----ESG----RTILITTHYIDE--AKK-SHMIG-LMRKG 207 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~-----~~g----~tIil~tH~l~~--~~~-~drv~-il~~G 207 (321)
|++++|||||+||||..+.++++.++++. +.| .+|+++||++++ ++. ||++. .+.+|
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 99999999999999999999999999884 332 678999999987 766 88774 34333
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.95 E-value=8.9e-33 Score=245.54 Aligned_cols=170 Identities=13% Similarity=0.089 Sum_probs=119.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----cCeEEEEcCCCCCCCCCCHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-----KKQLGFMPQQISLYPEFTIDEMIC 97 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~~~ig~v~Q~~~l~~~ltv~e~l~ 97 (321)
.++++| .+|++||+++|+||||||||||+|+|+|+++...+.+.+.+.. .+.++|+||++.+|+.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 457888 7999999999999999999999999999986333222221111 246899999988777777777653
Q ss_pred HH----H--HHhCCCHHHHHHHHHHH------HHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC-
Q psy106 98 YY----G--LIYGMSLQQIKEKAEYL------QALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI- 163 (321)
Q Consensus 98 ~~----~--~~~~~~~~~~~~~~~~l------l~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL- 163 (321)
.. . ..++.+..+.++++.+. ++.+++.. .++++.+|| ||+.+|++++|||||+|+
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~ 155 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRG 155 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTS
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcC
Confidence 21 1 22334444444555443 33444433 466778888 899999999999999998
Q ss_pred ---CHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 164 ---DPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 164 ---D~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
|+..++++++++++++ +.|.|+|++|||++++.. |||+++|.
T Consensus 156 ~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 156 TETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 7889999999999997 468999999999999977 99999884
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.95 E-value=2.2e-29 Score=220.34 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECC---cccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSI---TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g---~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
.++|+||||||||||+++|+|++... .|...-.- ...+++||++|++. +.+++ + ... ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~~-~~~------- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SSK-FFT------- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EET-TCC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hhh-cCC-------
Confidence 58999999999999999999997522 22211000 12357899999762 22222 0 000 000
Q ss_pred HHHHHHHcCCccccCCCCccChHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEE
Q psy106 114 AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAIT-----LLHDPELLILDE--PTSGIDPVIAEEIWNHLLYLAESGRTIL 186 (321)
Q Consensus 114 ~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~a-----L~~~P~lllLDE--PtsgLD~~~~~~i~~ll~~l~~~g~tIi 186 (321)
.-...++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+.+.+.+ .+.|+|
T Consensus 66 --------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i 134 (178)
T 1ye8_A 66 --------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVV 134 (178)
T ss_dssp --------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEE
T ss_pred --------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEE
Confidence 0023567889999999999999996 999999999999 9999999999999988854 467788
Q ss_pred Eec---CChhHHhh-cCEEEEEeCCEEEE
Q psy106 187 ITT---HYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 187 l~t---H~l~~~~~-~drv~il~~G~i~~ 211 (321)
++| ||.++++. |+| .+|++++
T Consensus 135 ~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 135 ATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp EECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred EEEccCCCchHHHHHHhc----CCcEEEE
Confidence 887 58888877 887 5667665
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.94 E-value=1.5e-32 Score=259.93 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=129.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+|+++||+++|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I---------~~~v~q~~~lf 165 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV---------LSFANHKSHFW 165 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE---------ECGGGTTSGGG
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE---------EEEecCccccc
Confidence 478899999997 35999999999999999999999999999999999998 7988 45789988887
Q ss_pred CCCCHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 88 PEFTIDE-MICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 88 ~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
+. |+.+ |+.+.. .... .+...++.+ ++. ++ ..+|||||||| ||||+++|++|| ||+||+
T Consensus 166 ~~-ti~~~ni~~~~---~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 166 LA-SLADTRAALVD---DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp GG-GGTTCSCEEEE---EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred cc-cHHHHhhccCc---cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 64 7776 776531 1111 222333332 322 34 78999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHH
Q psy106 166 VIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 166 ~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l 218 (321)
.++..+.. .||+++.+..||++ +|++|++++.|+++++
T Consensus 227 ~~~~~i~~--------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp TTCGGGGG--------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHHHH--------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 99888762 29999887779999 9999999999999887
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.94 E-value=1.8e-30 Score=256.89 Aligned_cols=188 Identities=13% Similarity=0.095 Sum_probs=154.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS------------- 73 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~------------- 73 (321)
++++++++++.|+.+ ..+|+++ |++.+|++++|+||||||||||+++|+|+.+|++|.|.+.|++
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 578999999999732 5699999 9999999999999999999999999999999999999998872
Q ss_pred ----cCeEEEEcCC-CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh
Q psy106 74 ----KKQLGFMPQQ-ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 74 ----~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
.+.++|++|+ ..+++.+++.+|+.+.+..+... .-.....-..+..||+|| |||+|| +
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------------~~~v~~~ld~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------------GQHVLLIMDSLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------------TCEEEEEEECHHHHHHHH-HHHHHH---T
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------------CCCHHHHHHhHHHHHHHH-HHHHHH---h
Confidence 1468999995 45677789999988765432110 000011112367899999 999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----eEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAE---S-GR-----TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~---~-g~-----tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
.+|++ |+||||..+..+.+++.++.+ + |+ ||+++|||++ ...||++++|.+|+++.+++++++.
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHcc
Confidence 89988 999999999999999998865 3 75 9999999999 4449999999999999999998875
Q ss_pred h
Q psy106 220 E 220 (321)
Q Consensus 220 ~ 220 (321)
.
T Consensus 344 ~ 344 (438)
T 2dpy_A 344 H 344 (438)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.94 E-value=9e-29 Score=233.66 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=131.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCC-CCC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQIS-LYP 88 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~-l~~ 88 (321)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+. ..++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 34678999999999999999999999999999999999999999987542 25899999998 888
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDP 165 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~ 165 (321)
.+|++||+.+... .+.. ..+++..++.+ .++++.+|| |||++||||++.+|+ +|+|| ||+|||+
T Consensus 169 ~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~ 235 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 235 (302)
T ss_dssp HHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGG
T ss_pred HHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCH
Confidence 8999999986432 2111 12344555543 456788999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecC---------ChhHHhh-cCEEEEEeCCEE
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTH---------YIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH---------~l~~~~~-~drv~il~~G~i 209 (321)
..+. ++++ +.|.|+|++|| .++.+.. ++.|.++..|+.
T Consensus 236 ~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 236 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 8652 4455 45999999999 4445544 788999999864
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=4.9e-25 Score=232.43 Aligned_cols=111 Identities=24% Similarity=0.435 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE
Q psy106 110 IKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tI 185 (321)
+.++++ .+..+++.. +++++.+|||||||||+||+||+.+| ++|||||||+||||...+.++++|+++++.|.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 344454 466788874 58999999999999999999999999 5999999999999999999999999999889999
Q ss_pred EEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 186 LITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 186 il~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
|++|||++++..||+|++| ++|++++.|+++++...
T Consensus 435 IvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 435 FVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp EEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred EEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999999988779999999 79999999999988653
No 77
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.93 E-value=5.1e-27 Score=252.42 Aligned_cols=173 Identities=15% Similarity=0.175 Sum_probs=127.1
Q ss_pred CcceEEEEe-----EEEEe-CCCCCceeeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 5 DKCAIRVEN-----AYKRH-SSKLPYVLDKLCMTVQK-------STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 5 ~~~~I~v~n-----l~k~y-~~~~~~iL~~isl~i~~-------Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
+.++|+++| |++.| ++ ..+++|++|++++ |++++|+||||||||||||++ |++.+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------- 814 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------- 814 (1022)
T ss_dssp SCCCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH---------
Confidence 346899999 99999 55 5699999999987 999999999999999999999 99875
Q ss_pred cccCeEE-EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 72 TSKKQLG-FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 72 ~~~~~ig-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
..++| ||||++. .+++.|++.. .+++.. ..+..+++|++|++ +++|++++.
T Consensus 815 --~aqiG~~Vpq~~~---~l~v~d~I~~---------------------rig~~d~~~~~~stf~~em~~-~a~al~la~ 867 (1022)
T 2o8b_B 815 --MAQMGCYVPAEVC---RLTPIDRVFT---------------------RLGASDRIMSGESTFFVELSE-TASILMHAT 867 (1022)
T ss_dssp --HHTTTCCEESSEE---EECCCSBEEE---------------------ECC---------CHHHHHHHH-HHHHHHHCC
T ss_pred --HhheeEEeccCcC---CCCHHHHHHH---------------------HcCCHHHHhhchhhhHHHHHH-HHHHHHhCC
Confidence 23466 9999863 3455554410 111111 22345788888876 999999999
Q ss_pred CCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEE--EecChhH
Q psy106 150 DPELLILDEPTSGIDPVIA-EEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILL--EESPPKV 217 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~-~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~--~~g~~~~ 217 (321)
+|+++||||||+|+|+... ..+++++..++++ |.++|++||+++++.. ||++.++ +|++. +.|++++
T Consensus 868 ~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 9999999999999999975 5578999999866 9999999999999977 9998876 58887 4455443
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=3.3e-27 Score=227.89 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=131.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCC-CCCCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQIS-LYPEF 90 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~-l~~~l 90 (321)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 568999999999999999999999999999999999999999987542 25899999998 88889
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHH
Q psy106 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDPVI 167 (321)
Q Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~~~ 167 (321)
|++|++.+... .+.. ..+++..++.+ .++++.+|| |||++||||++.+|+ +|+|| ||+|||+..
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999986532 1111 11334455543 456788999 999999999999999 99999 999999986
Q ss_pred HHHHHHHHHHHH-hCCceEEEecC---------ChhHHhh-cCEEEEEeCCEE
Q psy106 168 AEEIWNHLLYLA-ESGRTILITTH---------YIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 168 ~~~i~~ll~~l~-~~g~tIil~tH---------~l~~~~~-~drv~il~~G~i 209 (321)
+. +++. +.|.|+|++|| .++.+.. +..|.++..|+.
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 53 3444 45999999999 3444544 788999988853
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.92 E-value=3e-25 Score=214.27 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=78.1
Q ss_pred cCCCC-ccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 127 KRKCG-SLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 127 ~~~~~-~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.+.++. .|+|++||. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34666 79999999999999999 8999999999999999999999999998764 799999994 44
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q psy106 197 KSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 197 ~~drv~il~~G~i~~~g~~~~l 218 (321)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998876
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.92 E-value=1.5e-24 Score=207.12 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=71.4
Q ss_pred cCCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++.+||||||| |+++|+||+.+|++|||||||+||||..+..++++|+++.++|.|||++|||.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 5678999999999 6788888999999999999999999999999999999987778999999999765555999
Q ss_pred EEEEe
Q psy106 201 IGLMR 205 (321)
Q Consensus 201 v~il~ 205 (321)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.92 E-value=3.6e-30 Score=231.46 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=97.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----------cCeEEEEcCCCCCCCCCCH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------KKQLGFMPQQISLYPEFTI 92 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------~~~ig~v~Q~~~l~~~ltv 92 (321)
+..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+ ...++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999998 6 99988 432 1468999998766554321
Q ss_pred -HHHHH---HHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHH-----HHHHhcCCCEEEEeCCCCCC
Q psy106 93 -DEMIC---YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL-----AITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 93 -~e~l~---~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~i-----A~aL~~~P~lllLDEPtsgL 163 (321)
.+++. +....++.+. ..++++++.......+ .+|||||+||++| |++|+.+|++++|||||+++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred ccchhhhhhcccccCCCcH----HHHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 11111 1111222222 2234444443322122 5799999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy106 164 DPVIAEEIWNHLLYLA 179 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~ 179 (321)
|..+...+.+.+.+..
T Consensus 159 d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLN 174 (218)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999889988887764
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.92 E-value=8.9e-27 Score=223.98 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=141.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
++++++++++.|+.+ ..+++++ |+|.+|+++||+||||||||||+++|+|+.+|+.|.+.+.|++.
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 578999999999832 5799999 99999999999999999999999999999999999998877541
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+.+.+++|.. .+..+.+...... ....+.....+.+. .-..+.+||+|| ||+++| +
T Consensus 122 ~~~~~~v~~~~~~~-----~~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 122 STLSKCVLVVTTSD-----RPALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp HHHTTEEEEEECTT-----SCHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred hhhhceEEEEECCC-----CCHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 2356666542 2222222111000 00011111111111 114678999999 899999 6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----eEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAE--SGR-----TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~--~g~-----tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
.+|++ |+||||..+.++++++.++.+ .|. ||+++|||++ ...||++++|.+|+++.+++++++.
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 88888 999999999999999999864 587 9999999999 2339999999999999999988764
No 83
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.92 E-value=1e-27 Score=222.99 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
.++|+||||||||||+|+|+|+.+|++|+|.++|.+. +.+||+||++.+++.+||.||+.|+....+.. ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---CW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT---CS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---HH
Confidence 3799999999999999999999999999999987642 57999999999999999999988764333211 11
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCC
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~ 191 (321)
+.+...++. ...++.+.+||||||||+++|||++. ++++|||++||||.. .+.++.+++. .+||++.|.
T Consensus 81 ~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 81 EPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp HHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETT
T ss_pred HHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEec
Confidence 122222220 11355678999999999999999886 999999999999987 4556666655 888888887
Q ss_pred hhHH
Q psy106 192 IDEA 195 (321)
Q Consensus 192 l~~~ 195 (321)
.+.+
T Consensus 150 ~D~l 153 (270)
T 3sop_A 150 ADTM 153 (270)
T ss_dssp GGGS
T ss_pred cccC
Confidence 6544
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.92 E-value=6.4e-29 Score=235.65 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=132.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMT-----------------------VQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~-----------------------i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
.+|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 42 ~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 42 EQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 3588899999994 366777664 8999999999999999999999999999998
Q ss_pred ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHH
Q psy106 64 GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 64 ~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~i 143 (321)
+|. ++++|++|++.+++. |+.||+.+.. .++.+.....+.+.++++.++-...+.++.+|||||+||+++
T Consensus 118 ~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 118 DHH--------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEE
T ss_pred CCC--------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhh
Confidence 664 469999999988887 9999986432 123332222344555666655222356788999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHH-hh-cCEEEEEeCCE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEA-KK-SHMIGLMRKGI 208 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~-~~-~drv~il~~G~ 208 (321)
|+|++.+|++||||||++.+|+.. ..+.+ -+. .|+++|+.+.. ++ ++|...++++.
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~-~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDF-SLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSE-EEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHhccCCCEEEECCccccCCcch--------HHHHHhcCc-EEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998621 11222 233 46667777665 33 66665555554
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.92 E-value=7.8e-26 Score=227.77 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=121.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
+..+++|++++|+||||||||||+++++|+.+|+ |+ +.+.|.+|++. .++.++. ...+....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~--------~vi~~~~ee~~----~~l~~~~----~~~g~~~~- 336 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE--------RAILFAYEESR----AQLLRNA----YSWGMDFE- 336 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC--------CEEEEESSSCH----HHHHHHH----HTTSCCHH-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC--------CEEEEEEeCCH----HHHHHHH----HHcCCCHH-
Confidence 4589999999999999999999999999998885 43 12456777652 1222222 12233211
Q ss_pred HHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCc
Q psy106 110 IKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV-----IAEEIWNHLLYLAESGR 183 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~-----~~~~i~~ll~~l~~~g~ 183 (321)
++. ..++. ..+.++.+||+||+||+++|+++..+|+++|+| ||++||+. .++.++++++.+++.|.
T Consensus 337 ------~~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 337 ------EME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp ------HHH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------HHH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 122 23433 357788999999999999999999999999999 99999999 99999999999988899
Q ss_pred eEEEecCCh----------hHHhh-cCEEEEEeCCE
Q psy106 184 TILITTHYI----------DEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 184 tIil~tH~l----------~~~~~-~drv~il~~G~ 208 (321)
|||++||+. ++++. ||++++|++|+
T Consensus 409 tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 409 TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999 67766 99999999886
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.91 E-value=1.1e-26 Score=221.63 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=105.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMIC 97 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~ 97 (321)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+. +.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe----------------
Confidence 78999999999999999999999999999999999999999999987531 1122211
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 98 YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
. |||+||++||+||.++|+++++||||+ .++++.++.
T Consensus 224 ----------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~ 260 (330)
T 2pt7_A 224 ----------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNV 260 (330)
T ss_dssp ----------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHH
T ss_pred ----------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHH
Confidence 0 899999999999999999999999998 245677777
Q ss_pred HHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 178 LAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 178 l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
+...+.|++++||+++..+.|||+++|.+|.
T Consensus 261 ~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 261 LCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 6644568999999999545599999888774
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.91 E-value=3.2e-28 Score=245.21 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=125.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCccEEEECCccc--------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSC--ITGQNVLNGGNIHLSITSK--------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~--l~Gl~~p~~G~I~~~g~~~--------~ 75 (321)
++++.+++.+..++ .++|+++|| +|++|++++|+||||||||||+++ ++|+.+|++|.|+++|.+. +
T Consensus 11 ~~~~~~~~~~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~ 88 (525)
T 1tf7_A 11 NNSEHQAIAKMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNAR 88 (525)
T ss_dssp ---CCSSCCEECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHG
T ss_pred CCccccccccccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHH
Confidence 45677777766656 679999999 999999999999999999999999 6899999999999988652 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++||+||++...++ +.+. .... . + ...++++.+++.. .++.+.+||+| +|+++
T Consensus 89 ~~g~~~q~~~~~~~------l~~~-~~~~-~-~----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~l 142 (525)
T 1tf7_A 89 SFGWDLAKLVDEGK------LFIL-DASP-D-P----EGQEVVGGFDLSALIERINYAIQKY-------------RARRV 142 (525)
T ss_dssp GGTCCHHHHHHTTS------EEEE-ECCC-C-S----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEE
T ss_pred HcCCChHHhhccCc------EEEE-ecCc-c-c----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEE
Confidence 68888887542211 1000 0000 0 0 0000111111111 23444555555 58899
Q ss_pred EEeCCCC-----CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH---------hh-cCEEEEEeCCE
Q psy106 155 ILDEPTS-----GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA---------KK-SHMIGLMRKGI 208 (321)
Q Consensus 155 lLDEPts-----gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~---------~~-~drv~il~~G~ 208 (321)
++||||+ +||+..++.+++++++++++|+|||++||+++++ +. ||++++|++|+
T Consensus 143 ilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 143 SIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp EEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred EECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 9999998 4699999999999999987899999999999984 56 99999999844
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.91 E-value=1.3e-25 Score=209.15 Aligned_cols=177 Identities=13% Similarity=0.126 Sum_probs=119.5
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEEE-CCccc-----CeEEEEcCCCCCCCCCCHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-NIHL-SITSK-----KQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~~-~g~~~-----~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+ .+... +++.++++...+ +..++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccc
Confidence 3479999999999999999999999999999999999999877 6654 33211 223333333221 22233
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HH
Q psy106 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ-QRRVSLAITLLHDPELLILDEPTS---G---IDP-VI 167 (321)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq-kQRv~iA~aL~~~P~lllLDEPts---g---LD~-~~ 167 (321)
+.... + +.++..+.++.+++...+. ....+.++|.++ +||+. |+++.++|+++|+||||+ + +|+ ..
T Consensus 98 l~~~~-~---~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 98 LKREI-I---ENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHH-H---HHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred cccCC-C---CHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 32211 1 1122233334333222222 233456789998 67777 999999999999999999 5 566 66
Q ss_pred HHHHHHHHHHHHh-CCceEEEecCCh--h--------------------HHhh-cCEEEEEeCCEE
Q psy106 168 AEEIWNHLLYLAE-SGRTILITTHYI--D--------------------EAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 168 ~~~i~~ll~~l~~-~g~tIil~tH~l--~--------------------~~~~-~drv~il~~G~i 209 (321)
..++++.|+++++ .|+|||++||+. + .++. ||+|++|++|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 7889999999974 599999999995 4 5666 999999999875
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=6.1e-25 Score=233.41 Aligned_cols=158 Identities=20% Similarity=0.316 Sum_probs=127.1
Q ss_pred HHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHc
Q psy106 52 LLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----------LQQIKEKAEYLQALL 121 (321)
Q Consensus 52 Ll~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~~~~~~~~ll~~~ 121 (321)
...|..+.++|..++|.++|++... +..+++.+++.+.... ... .++..+ ..+.+..+
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~----------~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~-~~~~L~~v 451 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHE----------FTELSISEELEFLKNL-NLTEREREIVGELLKEIEK-RLEFLVDV 451 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHH----------HHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHHH-HHHHHHTT
T ss_pred chhcccccCChHhcCcEECCccHHH----------hhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHHH-HHHHHHHc
Confidence 3455567788999999999875411 3456778877764321 111 011222 33456677
Q ss_pred CCcc--ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 122 HLNH--FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 122 ~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++.. .++++.+|||||||||+|||||+++|+ +|||||||+||||..+..++++|++++++|.|||++|||++++..
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 8864 589999999999999999999999887 999999999999999999999999998889999999999999877
Q ss_pred cCEEEEE------eCCEEEEecChhHHHhh
Q psy106 198 SHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 198 ~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
||++++| ++|++++.|+++++.+.
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 9999999 89999999999998764
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.91 E-value=1.7e-26 Score=207.63 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=112.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeE--EEeCCcEEEEEcCCCCcHHHHHHHHH--cCCCCCccEEEECCccc--------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCM--TVQKSTIYSLLGASGCGKTTLLSCIT--GQNVLNGGNIHLSITSK--------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl--~i~~Gei~~llGpNGaGKSTLl~~l~--Gl~~p~~G~I~~~g~~~--------~ 75 (321)
|+++++++..+.. |+++ + .|++|++++|+||||||||||+++|+ |+.++.+|.+.+.+... +
T Consensus 6 ~~~~~~i~tg~~~-----lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPG-----FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp --CCCEECCSCTT-----TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred ccccceeecCCHh-----HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH
Confidence 5677777766544 4443 2 79999999999999999999999999 76567777777765432 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
++||.+|+...++.+++.++....... .. . + ........+.++..+...+..-..+|++++
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~----~------~------~~~~~~~~~~~~~~~~~~~~l~~~~p~~li 140 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVGL---PS----E------E------KFVLEDRFNVDNFLRYIYRVVKAINAKRLV 140 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC--------------------------------------CCHHHHHHHHHHHHHHTTCSEEE
T ss_pred HcCCChHHHhhcCCEEEEEcccccccc---cc----c------c------ceeccCcccHHHHHHHHHHHHHhhCCCEEE
Confidence 456666554333333333322111000 00 0 0 001112234455555555555568999999
Q ss_pred EeCCCCCCC-----HHHHHHHHHHHHHHHhCCceEEEecCChhHH---------hh-c-CEEEEEeC
Q psy106 156 LDEPTSGID-----PVIAEEIWNHLLYLAESGRTILITTHYIDEA---------KK-S-HMIGLMRK 206 (321)
Q Consensus 156 LDEPtsgLD-----~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~---------~~-~-drv~il~~ 206 (321)
+||||+++| +..++.+.++++.++++|+|||++||+++++ +. | |++++|++
T Consensus 141 lDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 141 IDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999998 6777779999999988899999999999998 55 7 99999963
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.90 E-value=4.1e-26 Score=207.73 Aligned_cols=173 Identities=10% Similarity=0.101 Sum_probs=112.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...++++|++|+. +++.+|+.+++.+....
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTC
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhhhccC
Confidence 67999999999999999999999999999999999965 444333 2346799999995 77889999998765433
Q ss_pred hCCCHHH--HHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy106 103 YGMSLQQ--IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180 (321)
Q Consensus 103 ~~~~~~~--~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~ 180 (321)
+....++ ..+.+.+.++.+. ...++++.+||+||+||+++ ++++.+|+++|+|||....|+. +.++
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-- 153 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-- 153 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--
T ss_pred CCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--
Confidence 2221111 1122233333221 22456788999999999988 6889999999999999888864 1222
Q ss_pred CCceEEEecCChhHH-hh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 181 SGRTILITTHYIDEA-KK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 181 ~g~tIil~tH~l~~~-~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+.||+++||+...+ +. ++++ ++|+ +++++.++
T Consensus 154 ~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 154 FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 378999999985544 44 5444 6664 56666543
No 92
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.90 E-value=8.6e-24 Score=212.50 Aligned_cols=80 Identities=28% Similarity=0.383 Sum_probs=74.5
Q ss_pred CCCCcc-ChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 128 RKCGSL-SGGQQRRVSLAITLLHDP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 128 ~~~~~L-SgGqkQRv~iA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..+.++|+++++ |.|||++||+++.+..|||+++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 456778 999999999999999999 99999999999999999999999999987 89999999999988789999999
Q ss_pred eCCE
Q psy106 205 RKGI 208 (321)
Q Consensus 205 ~~G~ 208 (321)
+++.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 6653
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.89 E-value=1.2e-23 Score=224.10 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=120.0
Q ss_pred eEEEEeEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCccEEEECCcccCe
Q psy106 8 AIRVENAYKRHSS---KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI--------TGQNVLNGGNIHLSITSKKQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~---~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l--------~Gl~~p~~G~I~~~g~~~~~ 76 (321)
.|++++...-+=. +...+++|+||++++|++++|+|||||||||+||++ .|...|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4666665443311 114688999999999999999999999999999999 56555543221
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~ll 154 (321)
++.+. .++. .+++. +.....+|+||+++..+|+++ +.+|+++
T Consensus 702 ~~~~d---~i~~-------------------------------~ig~~--d~l~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 702 VSIVD---CILA-------------------------------RVGAG--DSQLKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp EECCS---EEEE-------------------------------ECC-----------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred chHHH---HHHH-------------------------------hcCch--hhHHHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 11100 0010 11111 122345777777777777777 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 155 ILDEPTSGIDPVIAEEI-WNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i-~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
||||||+|+||.....+ +.++..+++ .|.|+|++||+.+.++.||++..+++|++.+.++++++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999999999988888 777788875 599999999998877779999999999999888777653
No 94
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.89 E-value=6.6e-23 Score=217.47 Aligned_cols=130 Identities=19% Similarity=0.401 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEE
Q psy106 89 EFTIDEMICYYGLIYGMSL----------QQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELL 154 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~ll 154 (321)
.+||.|++.|+..+ ..+. +++.++++ .+..++++. +++++.+|||||||||+||++|..+| ++|
T Consensus 451 ~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl~-~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRLG-FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHHH-HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH-HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 47899999985433 3443 23444553 467888874 58999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
||||||+||||...+.+++.|+++++.|.|||++|||++++..||||++| ++|++++.|+++++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999998899999999999998779999999 7999999999998865
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=1.1e-22 Score=216.44 Aligned_cols=132 Identities=22% Similarity=0.358 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcC--CCE
Q psy106 88 PEFTIDEMICYYGLIYGMSL----------QQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHD--PEL 153 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~--P~l 153 (321)
..+||.|.+.|... .+.+. +++.++++ .+..++++. +++++.+|||||||||+||+||+.+ |++
T Consensus 467 ~~ltV~e~l~f~en-l~l~~~~~~i~~~i~~ei~~Rl~-~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~l 544 (993)
T 2ygr_A 467 CELSIADCADFLNA-LTLGPREQAIAGQVLKEIRSRLG-FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVL 544 (993)
T ss_dssp SHHHHHHHHHTTTT-TTSCHHHHHHHHHHHHHHHHHHH-HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hhCCHHHHHHHHHh-cCCCHHHhHHHHHHHHHHHHHHH-HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcE
Confidence 34688888887432 23333 23444553 467788864 5899999999999999999999999 599
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
|||||||+||||...+.+++.|+++++.|.|||++|||++++..||||++| ++|++++.|+++++...
T Consensus 545 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 545 YVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 999999999999999999999999998999999999999998779999999 79999999999998753
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.88 E-value=6.9e-24 Score=222.16 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=118.0
Q ss_pred eEEEEeEEEEe---CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEECCcccCeEEEEcCC
Q psy106 8 AIRVENAYKRH---SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLSITSKKQLGFMPQQ 83 (321)
Q Consensus 8 ~I~v~nl~k~y---~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~ig~v~Q~ 83 (321)
.|++++...-. ++ ..+++|+||+ |++++|+||||||||||+|+++|+.. ++.|.+. . ....++|+++|
T Consensus 550 ~i~i~~~rHP~le~~~--~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-p-a~~~~i~~v~~- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRT--EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-P-AEEAHLPLFDG- 621 (765)
T ss_dssp SEEEEEECCTTGGGTS--CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-S-SSEEEECCCSE-
T ss_pred cEEEEEeECceEccCC--ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-e-hhccceeeHHH-
Confidence 36666663322 22 5689999999 99999999999999999999999874 6788753 1 12346788776
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCC--
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEP-- 159 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEP-- 159 (321)
+++.+++.||+.. .+|+||+|++.+|+++ +.+|+++|||||
T Consensus 622 --i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 622 --IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp --EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred --hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 5566677665432 3589999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 160 -TSGIDPVIA-EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 160 -tsgLD~~~~-~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
|++||+.+. ..+.+.+.+ .|.|+|++||+.+++..| .-.+.++++.....
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC--CTTEEEEEEEEECC
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh--hhcceEEEEEEEEc
Confidence 999999876 467777765 589999999999887655 22345566555443
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.88 E-value=4.4e-24 Score=189.56 Aligned_cols=144 Identities=21% Similarity=0.255 Sum_probs=91.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-------CccEEEECCccc---CeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVL-------NGGNIHLSITSK---KQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-------~~G~I~~~g~~~---~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
-|++|++++|+||||||||||+++|+|+..| ..|.+++++... +++++++|...+++. ++.||+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~--- 96 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYV--- 96 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEE---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEE---
Confidence 6999999999999999999999999996555 233555544321 123333333322221 22222111
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH-HHHHHHHHHHhc-------CCCEEEEeCCCCCCCHH-------
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ-QRRVSLAITLLH-------DPELLILDEPTSGIDPV------- 166 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq-kQRv~iA~aL~~-------~P~lllLDEPtsgLD~~------- 166 (321)
....+.++ ++.+..+++++. +|+++++||||+++|+.
T Consensus 97 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~ 148 (231)
T 4a74_A 97 ----------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 148 (231)
T ss_dssp ----------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred ----------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence 11223333 333555555554 99999999999999984
Q ss_pred H-----HHHHHHHHHHHH-hCCceEEEecCChhH----Hhh-cCEEEEEeCC
Q psy106 167 I-----AEEIWNHLLYLA-ESGRTILITTHYIDE----AKK-SHMIGLMRKG 207 (321)
Q Consensus 167 ~-----~~~i~~ll~~l~-~~g~tIil~tH~l~~----~~~-~drv~il~~G 207 (321)
. ..++++.+.+++ +.|+|||++||+.++ ++. ||++++|++|
T Consensus 149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2 236777777776 459999999996655 766 9999999875
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.87 E-value=6e-25 Score=206.98 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=89.3
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCccEEEECCcc------cCeEEEEcCCC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ-NVLNGGNIHLSITS------KKQLGFMPQQI 84 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl-~~p~~G~I~~~g~~------~~~ig~v~Q~~ 84 (321)
+||++.|++ +.++++++|+| +|+||||||||||+++|+|. ..|++| +.++|.+ .+.+++++|..
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 589999998 67999999999 99999999999999999998 889999 7665533 24579999988
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GI 163 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gL 163 (321)
.++..+|+.|+..+...... .+..+.....+.+ ..++++.++|||||||+.+|||++ ++++||||+ ||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~L 141 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINC--RDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGL 141 (301)
T ss_dssp -CCEEEEEEEEC-------------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSC
T ss_pred CcccCcchhhhhhhhhhcCc--HHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCC
Confidence 88888888887766432210 0111111222211 135678899999999999999986 999999998 59
Q ss_pred CHHHHHHHHHHHHHHHh-CCceEEEecCChh
Q psy106 164 DPVIAEEIWNHLLYLAE-SGRTILITTHYID 193 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~-~g~tIil~tH~l~ 193 (321)
|+... ++++++.+ .+.++++++||+.
T Consensus 142 d~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 142 KPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99873 56666654 3889999999984
No 99
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.87 E-value=5e-22 Score=169.11 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=73.7
Q ss_pred cCCCCccChHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQRRVSLA------ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA------~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.+.+++++|.|||++|||++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 578899999999999876 89999999999999999999999999999999987678999999999954445999
Q ss_pred EEEE--eCCE
Q psy106 201 IGLM--RKGI 208 (321)
Q Consensus 201 v~il--~~G~ 208 (321)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.87 E-value=6.5e-22 Score=194.25 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 129 KCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||+...+..||+++.+
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEE
Confidence 34569999999999999999 58999999999999999999999999999876689999999998776779999988
Q ss_pred e
Q psy106 205 R 205 (321)
Q Consensus 205 ~ 205 (321)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.86 E-value=9.9e-23 Score=216.68 Aligned_cols=142 Identities=14% Similarity=0.217 Sum_probs=99.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+++|+||++++|++++|+||||||||||||+++++... ..|.. +... ...++++ ..++..+.+.+
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~-~~~i~~~---d~i~~~ig~~d------- 727 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAE-EATIGIV---DGIFTRMGAAD------- 727 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSS-EEEEECC---SEEEEEC-----------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccch-hhhhhHH---HHHHHhCChHH-------
Confidence 5689999999999999999999999999999999754211 11100 0000 0111111 01111111111
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NHLLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~ll~~l~~ 180 (321)
...+..+++|+||+|++.++++ +.+|+++||||||+||||.....+. .++..+.+
T Consensus 728 -----------------------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~ 783 (918)
T 3thx_B 728 -----------------------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR 783 (918)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1234567899999999999999 8999999999999999999998887 77777764
Q ss_pred -CCceEEEecCChhHHhhcCE
Q psy106 181 -SGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 181 -~g~tIil~tH~l~~~~~~dr 200 (321)
.|.|+|++||+++.++.||+
T Consensus 784 ~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 784 DVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCCEEEEECSCGGGGGHHHH
T ss_pred hcCCeEEEEeCcHHHHHHHhh
Confidence 69999999999988765554
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.86 E-value=3.4e-23 Score=191.54 Aligned_cols=140 Identities=17% Similarity=0.157 Sum_probs=103.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCcccCeEEEEcCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
++++++++. .+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+..-+
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~---i~~~~~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP---IEYVFKHKKSI 74 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS---CCSCCCCSSSE
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc---ceeecCCccee
Confidence 455666532 3899999 9999999999999999999999999999998 9999988765 34555543100
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
. .. ..++++ ..+| |++||+||.++|+++++|||| |+.+
T Consensus 75 --------------v---~q-----------~~~gl~-----~~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 --------------V---NQ-----------REVGED-----TKSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp --------------E---EE-----------EEBTTT-----BSCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred --------------e---eH-----------HHhCCC-----HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 012221 1223 899999999999999999999 9988
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEe
Q psy106 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMR 205 (321)
Q Consensus 168 ~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~ 205 (321)
...++ +. ++.|.+|+++||+.+....|||++.|.
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHH---HH-HccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 65443 33 356999999999988544578765553
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.86 E-value=8.8e-25 Score=224.06 Aligned_cols=183 Identities=14% Similarity=0.239 Sum_probs=118.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCccc-
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKL----------CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSK- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~i----------sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~- 74 (321)
++++++|+++.|+.+.+++++.+ +++++. +||+||||||||||+++|+|+..| ++|.|+++|.+.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46899999999975333455544 477776 999999999999999999999988 799999887541
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++.+||.+|+.+.....+.. +. .+| ++++.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~---------------~~--------~~s---~~~i~l 139 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE---------------GM--------GIS---HELITL 139 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS---------------SS--------CCC---SCCEEE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC---------------cc--------ccc---hHHHHH
Confidence 47999999999999999999987653321100 00 001 122233
Q ss_pred HHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHH-h-CCceEEEecCChhHH--------hh-----cCEEE
Q psy106 144 AITLLHDPELLILDEP------TSGIDPVIAEEIWNHLLYLA-E-SGRTILITTHYIDEA--------KK-----SHMIG 202 (321)
Q Consensus 144 A~aL~~~P~lllLDEP------tsgLD~~~~~~i~~ll~~l~-~-~g~tIil~tH~l~~~--------~~-----~drv~ 202 (321)
+.+....|+++|+||| |+|||+..+.++.++++++. + .+.+++++||+++.+ .. +..|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 3344568999999999 99999999999999999964 3 478899999998632 11 35689
Q ss_pred EEeCCEEEEecChhHH
Q psy106 203 LMRKGILLEESPPKVL 218 (321)
Q Consensus 203 il~~G~i~~~g~~~~l 218 (321)
++.++.++..|+.+++
T Consensus 220 VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKV 235 (608)
T ss_dssp EEECGGGSSSSSTTCC
T ss_pred EecchhhcCcccHHHH
Confidence 9999888877766543
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.85 E-value=9.6e-25 Score=192.90 Aligned_cols=145 Identities=13% Similarity=0.051 Sum_probs=113.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC--CCCCHHHHHHHHHHHhCCCHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY--PEFTIDEMICYYGLIYGMSLQQI 110 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~ 110 (321)
.++|+++||+||||||||||+++|+|++.| +++|++|++.++ ..+|+.++..+.. +.+....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~ 66 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFD 66 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------CeEEEecCccccCcccccHHHhcCCCC---CChhhhh
Confidence 578999999999999999999999998875 589999998766 5678888765431 1111111
Q ss_pred HHHHHHHHHHcCCcc-ccCCCCccChHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH
Q psy106 111 KEKAEYLQALLHLNH-FKRKCGSLSGGQ----QRRVSLAITLLHDPELLILDEPTSG-------IDPVIAEEIWNHLLYL 178 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~-~~~~~~~LSgGq----kQRv~iA~aL~~~P~lllLDEPtsg-------LD~~~~~~i~~ll~~l 178 (321)
.+.+.+.++.+++.. .++++.++|+|| +||+++|++++.+|+++++||||++ ||+....++.+.+.+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 233444555555543 556788999997 4788999999999999999999999 9999999999998875
Q ss_pred -HhCCceEEEecCChh
Q psy106 179 -AESGRTILITTHYID 193 (321)
Q Consensus 179 -~~~g~tIil~tH~l~ 193 (321)
+++|.|++.++|+..
T Consensus 147 ~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 147 VLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHSCCCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHH
Confidence 467999999999753
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.84 E-value=1.6e-22 Score=212.92 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=111.8
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..|.. +. ....++++++| ++..+++.|++..
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vp-a~~~~i~~~~~---i~~~~~~~d~l~~--- 665 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VP-AQKVEIGPIDR---IFTRVGAADDLAS--- 665 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BS-SSEEEECCCCE---EEEEEC----------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cc-hhcccceeHHH---HHhhCCHHHHHHh---
Confidence 5689999999 99999999999999999999999997432 23321 11 11134555554 4455555555421
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~ 180 (321)
..+++|++|++ ++.+...+.+|+++|||||++|+|+.....+ ++++..+++
T Consensus 666 ---------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 666 ---------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred ---------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 12346777765 4455557999999999999999999877775 788888887
Q ss_pred -CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhH
Q psy106 181 -SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 181 -~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~ 217 (321)
.|.|+|++||+.+.+..||++..+++|++......++
T Consensus 718 ~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~ 755 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDT 755 (800)
T ss_dssp TTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTE
T ss_pred ccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEcCCc
Confidence 5999999999998877788877788888876654333
No 106
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.83 E-value=2.3e-22 Score=189.98 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=104.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCCCHHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEFTIDEMICYY 99 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~ltv~e~l~~~ 99 (321)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ..++|++|++.++|.+++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999987542 2589999999988888999998754
Q ss_pred HHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy106 100 GLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179 (321)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~ 179 (321)
.. .+.. ..+++..+. .+.....++..++||++||||++.+|+.++| .||+.+...+++.++++.
T Consensus 181 ~~-~~~d--------~~llDt~G~--~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KA-RGYD--------LLFVDTAGR--LHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH 244 (304)
T ss_dssp HH-HTCS--------EEEECCCCC--CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred Hh-CCCC--------EEEecCCCC--CCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence 21 1110 001122222 1222233455558999999999999994444 444444455666677766
Q ss_pred h-CCceEEEecCChhH
Q psy106 180 E-SGRTILITTHYIDE 194 (321)
Q Consensus 180 ~-~g~tIil~tH~l~~ 194 (321)
+ .|.|+|++||+.+.
T Consensus 245 ~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHCCSEEEEECTTSS
T ss_pred HHcCCcEEEEECCccc
Confidence 4 48999999998543
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.82 E-value=4.8e-21 Score=169.55 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=111.5
Q ss_pred CceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
.+.|+++.. .+++|++++|+||||||||||++.+++...+++|.+.+.+. + .+..+......
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~----------~------~~~~~~~~~~~- 71 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT----------E------ESRDSIIRQAK- 71 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES----------S------SCHHHHHHHHH-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc----------c------cCHHHHHHHHH-
Confidence 457899988 89999999999999999999999999888777776654321 1 12222111111
Q ss_pred HhCCCHHHHHHH----HHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHH
Q psy106 102 IYGMSLQQIKEK----AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGI--DPVIAEEIWN 173 (321)
Q Consensus 102 ~~~~~~~~~~~~----~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgL--D~~~~~~i~~ 173 (321)
..+......... .+......+ . .......|.++.++...+.+...+|+ ++++||||+++ |+..+.++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~ 148 (235)
T 2w0m_A 72 QFNWDFEEYIEKKLIIIDALMKEKE-D--QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISY 148 (235)
T ss_dssp HTTCCCGGGBTTTEEEEECCC-----C--TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHH
T ss_pred HhcchHHHHhhCCEEEEeccccccC-c--eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHH
Confidence 111111000000 000000000 0 00113459999999988888888999 99999999887 9999999999
Q ss_pred HHHHHH-hCCceEEEecCCh--------hHHhh-cCEEEEEeCCE
Q psy106 174 HLLYLA-ESGRTILITTHYI--------DEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 174 ll~~l~-~~g~tIil~tH~l--------~~~~~-~drv~il~~G~ 208 (321)
.|++++ +.|.|||++||+. ..++. ||++++|++..
T Consensus 149 ~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 149 YLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 999986 5699999999999 44666 99999998643
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.82 E-value=3.7e-22 Score=191.72 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=103.9
Q ss_pred ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCc----cE-EEECCccc---CeEEEEcCCCCCCCCCCH
Q psy106 24 YVLDKL-CMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNG----GN-IHLSITSK---KQLGFMPQQISLYPEFTI 92 (321)
Q Consensus 24 ~iL~~i-sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~----G~-I~~~g~~~---~~ig~v~Q~~~l~~~ltv 92 (321)
..|+.+ ++.+++|++++|+||||||||||++++++.. +|++ |. +++++... +++++++|...+++. ++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-HH
Confidence 356666 6899999999999999999999999999988 6776 57 77776542 345555555443322 23
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCH
Q psy106 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL-------HDPELLILDEPTSGIDP 165 (321)
Q Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-------~~P~lllLDEPtsgLD~ 165 (321)
.+|+.+. . . .-|.+|+|++.++++++ .+|+++|+||||+++|+
T Consensus 197 ~~ni~~~---------------------------~-~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 197 LKHIYVA---------------------------R-A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp GGGEEEE---------------------------E-C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred hhCEEEE---------------------------e-c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 2222111 0 0 01566777777777777 78999999999999998
Q ss_pred HH------------HHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 166 VI------------AEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 166 ~~------------~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
.. ..+++..|++++ +.|.|||+++|....... ++.......|+++++++
T Consensus 247 ~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 247 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 52 355666667765 469999999998876543 33344555666655544
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.81 E-value=2.2e-21 Score=187.08 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=99.5
Q ss_pred EeEEEEeCCCCCceeeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCccc-----CeEE
Q psy106 12 ENAYKRHSSKLPYVLDKLCM-------TVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSK-----KQLG 78 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl-------~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~-----~~ig 78 (321)
.+++.+|-......|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.+. ...+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 35555653333456777776 77899999999999999999999999999987 56664322211 1223
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+++|........+. .+ +||+||.++|++|++||
T Consensus 172 ~v~q~~~~~~~~~~-------------------------------------------~~----~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 172 LVNQREVHRDTLGF-------------------------------------------SE----ALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEEEBTTTBSCH-------------------------------------------HH----HHHHHTTSCCSEEEESC
T ss_pred ceeeeeeccccCCH-------------------------------------------HH----HHHHHhhhCcCEEecCC
Confidence 33333221111111 11 99999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
|| |++. ++.+.++++.|.||++++|+.+.+..|||++.|..|
T Consensus 205 p~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 205 MR---DLET----IRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CC---SHHH----HHHHHHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CC---CHHH----HHHHHHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99 6555 444445567799999999999988669998877543
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.80 E-value=1.5e-22 Score=178.87 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=99.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ 108 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~ 108 (321)
|++++|+||||||||||+++|+|+++ ++| |.++|.. .+++||++|+. .... +++. .. .....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~-~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RV-GLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---EC-CCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---cc-cccCC
Confidence 78999999999999999999999998 899 8877643 26789999976 2211 1111 00 00000
Q ss_pred HHHHHHHHHHHHcCC-ccccCCCCccChHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhC
Q psy106 109 QIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRV-SLAI---TLLHDPELLILDE--PTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 109 ~~~~~~~~ll~~~~l-~~~~~~~~~LSgGqkQRv-~iA~---aL~~~P~lllLDE--PtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
+ ... ....++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.+++. .
T Consensus 70 ----------~-~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~ 134 (189)
T 2i3b_A 70 ----------P-GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T 134 (189)
T ss_dssp ----------S-SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C
T ss_pred ----------c-cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C
Confidence 0 000 013445567999999988 4455 6899999999999 899999976665555553 3
Q ss_pred CceEEE----ecCChhHHhhcCEEEEEeCCEEEEe
Q psy106 182 GRTILI----TTHYIDEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 182 g~tIil----~tH~l~~~~~~drv~il~~G~i~~~ 212 (321)
..++|+ +||+.+ ...+|++..+.+|+|+..
T Consensus 135 ~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 135 PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 445553 449863 122444444577888764
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.1e-21 Score=192.74 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=99.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--EEEECCc---ccCeEEEEc
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSIT---SKKQLGFMP 81 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G--~I~~~g~---~~~~ig~v~ 81 (321)
.+|.++||++.|++ +.+++++||+| +|+||||||||||+++|+|...|+.| .+.++.. ....+++++
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 57999999999988 67999999998 99999999999999999999875544 2222111 124589999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCC---EEEEeC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE---LLILDE 158 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~---lllLDE 158 (321)
|++.+++.+|+.|++.+...... ....+.+...++ ..++.+++||++||||++.+|+ ++++||
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~~~vlL~lde 147 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 147 (418)
T ss_dssp -----CEEEEEEECC--------------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECC
T ss_pred ecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEec
Confidence 99888888999998876533211 100011111111 1456678889999999999999 999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHhCCceEEEecCChh
Q psy106 159 PT-SGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193 (321)
Q Consensus 159 Pt-sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~ 193 (321)
|| .|||+... ++++++.. +.+||++.|..+
T Consensus 148 Pt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 148 PSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp C-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred CcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 99 69999873 44445543 678888877554
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=2.1e-20 Score=163.68 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=100.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCccEEEECCccc--CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----VLNGGNIHLSITSK--KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-----~p~~G~I~~~g~~~--~~ig~v 80 (321)
+|+++|+++.|+. .++++ |++++|..++|+|+||||||||++.|+|.. .|+.|++...+... ..+- +
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~-l 76 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-L 76 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-E
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEE-E
Confidence 6899999999974 37887 899999999999999999999999999998 78888775422100 0111 1
Q ss_pred cCCCCCCC----CCC---HHHHHHHHHHH-h---------C--CCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHH
Q psy106 81 PQQISLYP----EFT---IDEMICYYGLI-Y---------G--MSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQR 139 (321)
Q Consensus 81 ~Q~~~l~~----~lt---v~e~l~~~~~~-~---------~--~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQ 139 (321)
.+.+.+.. .-. ....+...... . . .......+.+..+++..++.. ...++..+|+||+|
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~ 156 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK 156 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence 12222110 000 11112111110 0 0 001112223444555566653 35678889999999
Q ss_pred H-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy106 140 R-VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184 (321)
Q Consensus 140 R-v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~t 184 (321)
| +..|++++.+|+.+++|||||++|+.+..++++.|.++.++|.|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 157 AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9 89999999999999999999999999999999999988765544
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.79 E-value=2e-24 Score=187.89 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
|++++|+||||||||||+++|++ |.+|.+.+++.+. ...|+++|....++..++++++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ----- 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcC-----
Confidence 68999999999999999999997 6789999987543 345677776544445577777765432210000
Q ss_pred HHHHHHHHcCCccccCCCCcc--ChHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy106 113 KAEYLQALLHLNHFKRKCGSL--SGGQQRRVSLAI------TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~L--SgGqkQRv~iA~------aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~t 184 (321)
...+++.+......+.+.++ |+||+|++.++. +++.+|+...+|+ ++|+..+.. ++.+..+.+.+.+
T Consensus 74 -~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ 148 (189)
T 2bdt_A 74 -NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERY 148 (189)
T ss_dssp -CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTS
T ss_pred -CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccE
Confidence 00000000000001122345 899999988888 9999999888884 899998888 8888888666889
Q ss_pred EEEecCC-hhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 185 ILITTHY-IDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 185 Iil~tH~-l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
+|.+||. +++++. ||+|+ ++|++++.|+++.+
T Consensus 149 ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 149 FYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred EEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 9999999 999987 99998 99999999988765
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.79 E-value=7.4e-22 Score=178.08 Aligned_cols=141 Identities=19% Similarity=0.256 Sum_probs=97.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc-----CeEEEEcCCCCCCCCCCH----HHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK-----KQLGFMPQQISLYPEFTI----DEMICY 98 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~-----~~ig~v~Q~~~l~~~ltv----~e~l~~ 98 (321)
.-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.+.+. ..++|+||++..|+.+++ .||+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 446799999999999999999999999999986 688888876543 357888887654443333 222211
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
....++. | +++ +..++..++++||| ||+.++.++++.+.
T Consensus 90 ~~~~yg~----------------------------~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-- 128 (219)
T 1s96_A 90 FGNYYGT----------------------------S---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-- 128 (219)
T ss_dssp TTEEEEE----------------------------E---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred HhccCCC----------------------------C---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence 1111111 1 111 33445568999999 99999999999875
Q ss_pred HhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 179 ~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++.||+++||++++++. |+ +.+| .++++++...
T Consensus 129 --~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 129 --HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp --TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred --CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 58999999999999865 32 5667 6788887654
No 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.79 E-value=3.2e-19 Score=164.94 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=101.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---cCeEEEEcCCCCCCCCCCHHHHHHHHHHH-hCCCH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---KKQLGFMPQQISLYPEFTIDEMICYYGLI-YGMSL 107 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~~~~ 107 (321)
.+++|++++|+||||||||||++.+++... .|.+. .|.. ..++.|+..+.. ..+........ .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~~~~v~~~~~e~~------~~~~~~r~~~~g~~~~~ 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELPTGPVIYLPAEDP------PTAIHHRLHALGAHLSA 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCCCCCEEEEESSSC------HHHHHHHHHHHHTTSCH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCCCccEEEEECCCC------HHHHHHHHHHHHhhcCh
Confidence 488999999999999999999999998654 45553 2332 235777765432 21111111111 11222
Q ss_pred HHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHHH-h
Q psy106 108 QQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS--GIDPVI---AEEIWNHLLYLA-E 180 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts--gLD~~~---~~~i~~ll~~l~-~ 180 (321)
.....+++.+.+.. .++++..||+||+|++ ++++.+|+++++||||+ ++|+.. ..++++.|++++ +
T Consensus 97 ----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 97 ----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp ----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 22344556666544 5678999999998865 68889999999999999 999854 478888888886 5
Q ss_pred CCceEEEecCChhHHh
Q psy106 181 SGRTILITTHYIDEAK 196 (321)
Q Consensus 181 ~g~tIil~tH~l~~~~ 196 (321)
.|.|||+++|+.....
T Consensus 170 ~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 170 TGCSIVFLHHASKGAA 185 (279)
T ss_dssp HCCEEEEEEEC-----
T ss_pred cCCEEEEEecCCCccc
Confidence 6999999999987654
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.74 E-value=6.3e-18 Score=147.36 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=70.4
Q ss_pred cCCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 127 KRKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
.+++..||||||||++||++|+. +|+++||||||+|||+.++..+.++|+++.+ +.++|++||+....+.||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEEE
Confidence 35678999999999999999974 4699999999999999999999999998864 468999999988777799998
Q ss_pred EE--eCCE
Q psy106 203 LM--RKGI 208 (321)
Q Consensus 203 il--~~G~ 208 (321)
.+ .+|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 65 4564
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.73 E-value=2.8e-17 Score=144.75 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=100.2
Q ss_pred ceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 24 YVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 24 ~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.|+++.. .+++|++++|+||||||||||++.+++ ++. + ++.|+..+..+ +.. .+.-....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~----------~v~~i~~~~~~----~~~-~~~~~~~~ 68 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-K----------KVAYVDTEGGF----SPE-RLVQMAET 68 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-S----------EEEEEESSCCC----CHH-HHHHHHHT
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-C----------cEEEEECCCCC----CHH-HHHHHHHh
Confidence 35666665 689999999999999999999999999 322 2 23444433321 221 11111111
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHH
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ--QRRVSLAITLLHD-PELLILDEPTSGIDPVI--------AEEI 171 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq--kQRv~iA~aL~~~-P~lllLDEPtsgLD~~~--------~~~i 171 (321)
.+...+ .+++.+ .+.++|+++ +|+++.+++++.+ |+++++||||+.+|+.. ..++
T Consensus 69 ~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~ 134 (220)
T 2cvh_A 69 RGLNPE-------EALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQ 134 (220)
T ss_dssp TTCCHH-------HHHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHH
T ss_pred cCCChH-------HHhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHH
Confidence 222211 111211 223445554 5788889999986 99999999999999743 2445
Q ss_pred HHHHHHHHh-CCceEEEecCChh-------------HHhh-cCEEEEEeCC
Q psy106 172 WNHLLYLAE-SGRTILITTHYID-------------EAKK-SHMIGLMRKG 207 (321)
Q Consensus 172 ~~ll~~l~~-~g~tIil~tH~l~-------------~~~~-~drv~il~~G 207 (321)
++.|+++++ .|.|||+++|... .++. ||++++|++.
T Consensus 135 ~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 135 LQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 566777764 5899999999875 4555 9999999754
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.73 E-value=1.5e-20 Score=163.06 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=95.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
.+++|++++|+||||||||||+++|+|. |+.|.|.+++.+. +.++|++|+.. +.+++.+|+.+......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999997 7889999987542 23566666543 34678888765432210
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-c--cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy106 105 MSLQQIKEKAEYLQALLHLNH-F--KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~-~--~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
.... ...++.++...++.. . +.++..+|+|++||+++||++.++|+++ +|+...+.+++.+..+.+.
T Consensus 81 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 81 KEGY--FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HTSC--EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred ccCC--eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0000 000000001111211 1 3456789999999999999999999876 6898888888877665433
Q ss_pred CceEEEec
Q psy106 182 GRTILITT 189 (321)
Q Consensus 182 g~tIil~t 189 (321)
+..+|.++
T Consensus 151 ~~~~i~t~ 158 (191)
T 1zp6_A 151 EHHVLPVS 158 (191)
T ss_dssp GGGEEECT
T ss_pred cccEEECC
Confidence 33344443
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.72 E-value=4.5e-21 Score=174.09 Aligned_cols=139 Identities=22% Similarity=0.234 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCccEEEECCccc-----CeEEEEcCCCCCCCCCCHHHHHHHHHH-----
Q psy106 35 KSTIYSLLGASGCGKTTLLSCIT---GQNVLNGGNIHLSITSK-----KQLGFMPQQISLYPEFTIDEMICYYGL----- 101 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~---Gl~~p~~G~I~~~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~~~~----- 101 (321)
++++++|+||||||||||+++|+ |+..|++|++.+++.+. ..+++++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 99999999998765321 235566788778888899998876432
Q ss_pred ---HhCCCHHHHHHHHHHHHHHc--C------------Ccc-ccCCCCccChHHHHHHHHHHHH-hcCCCEEEEe----C
Q psy106 102 ---IYGMSLQQIKEKAEYLQALL--H------------LNH-FKRKCGSLSGGQQRRVSLAITL-LHDPELLILD----E 158 (321)
Q Consensus 102 ---~~~~~~~~~~~~~~~ll~~~--~------------l~~-~~~~~~~LSgGqkQRv~iA~aL-~~~P~lllLD----E 158 (321)
..+.+... ..+..+.... + +.. .++++.+||| |+ +|+ +.+|++++|| |
T Consensus 106 ~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 11222211 1122222111 1 111 3567889999 66 778 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESG 182 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g 182 (321)
||++||+.++..+.+.++++.+++
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHHhH
Confidence 999999999999999999887653
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=2.6e-19 Score=176.03 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=115.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCcccCeEEEEcC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTI--YSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMPQ 82 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei--~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~~~ig~v~Q 82 (321)
.+++++ ++.|++ .+ |+++||++++|++ +||+||||||||||+|+|+|+.- .|.-.. .+...+.++|++|
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q 89 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQ 89 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEee
Confidence 366777 899987 55 9999999999999 99999999999999999999842 222111 1122357999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhC-C-CH---HHHHHHHHHHHHHc-CCc----c-ccCCC-----------CccChHHHHH
Q psy106 83 QISLYPEFTIDEMICYYGLIYG-M-SL---QQIKEKAEYLQALL-HLN----H-FKRKC-----------GSLSGGQQRR 140 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~-~-~~---~~~~~~~~~ll~~~-~l~----~-~~~~~-----------~~LSgGqkQR 140 (321)
++.+++.+|+.||+.++..... . .. .........++... ++. . .+.++ ..|+-..
T Consensus 90 ~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--- 166 (427)
T 2qag_B 90 ESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--- 166 (427)
T ss_dssp C--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---
T ss_pred cCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---
Confidence 9988888999888765432100 0 00 11222333333333 221 0 12221 2455555
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCceEEEecCCh
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-LAESGRTILITTHYI 192 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~-l~~~g~tIil~tH~l 192 (321)
+.++++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.+-
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7999999999999999999999999999999999986 777899999988753
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.70 E-value=1.5e-21 Score=186.64 Aligned_cols=167 Identities=11% Similarity=0.162 Sum_probs=118.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
+|+++++++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.
T Consensus 29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 5788899999976 5699999999999999999999999999999999999999999999865432
Q ss_pred CeEEEEcCCCCCCCCCC------------HHHHHHHHH-------------------H----------HhCCC-HHHHH-
Q psy106 75 KQLGFMPQQISLYPEFT------------IDEMICYYG-------------------L----------IYGMS-LQQIK- 111 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~lt------------v~e~l~~~~-------------------~----------~~~~~-~~~~~- 111 (321)
.+++|++|++.+|...+ +.|.+.... . ..... ..+.+
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 46899999988775321 222221100 0 00000 00100
Q ss_pred --HHHHHHHHHcCCccccC-CCCccChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy106 112 --EKAEYLQALLHLNHFKR-KCGSLSGGQQRRVSLAITLLH------DPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180 (321)
Q Consensus 112 --~~~~~ll~~~~l~~~~~-~~~~LSgGqkQRv~iA~aL~~------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~ 180 (321)
+.+.+....+.++..|. ...++|+|++|++..|++++. +|+++. ||++|+.+..++++.|.++.+
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 00111111122222342 335789999999999999988 688886 999999999999999988653
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.70 E-value=4.6e-19 Score=170.83 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=99.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------cCeEEEEc-CCCCCCCCCCHHHHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQLGFMP-QQISLYPEFTIDEMIC 97 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------~~~ig~v~-Q~~~l~~~ltv~e~l~ 97 (321)
++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.. ...++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE----------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc-----------
Confidence 399999999999999999999999999999999999999999998642 13577777 44321
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 98 YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+++++.+|..|+.++..+|+.+++|||.. .+..+.+..
T Consensus 234 ----------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~ 272 (361)
T 2gza_A 234 ----------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINV 272 (361)
T ss_dssp ---------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHH
T ss_pred ----------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHH
Confidence 013344578889999999999999999986 345666766
Q ss_pred HHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 178 LAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 178 l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
+.....|++.++|..+....+||+..+..+
T Consensus 273 l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 273 AASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp HHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 654456789999997744559998888765
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.69 E-value=1.8e-20 Score=180.17 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=110.6
Q ss_pred eeeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCc----cEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 25 VLDKLCMTVQK--STIYSLLGASGCGKTTLLSCITGQNVLNG----GNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 25 iL~~isl~i~~--Gei~~llGpNGaGKSTLl~~l~Gl~~p~~----G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |++.+++... .....++.... +++.+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-------~~~~~~~~~~~-~~I~~ 228 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-------GDEQAMQYSDY-PQMAL 228 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-------SCTTSSCTTTH-HHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-------CCcccCChhHH-HHHHH
Confidence 35679999999 99999999999999999999999999998 7766532100 00111111122 34443
Q ss_pred HHHHhCCCHHHHHHHHHHHHH---HcCCccccCCCCccChHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQA---LLHLNHFKRKCGSLSGGQQRRVSLAITLL-HDPELLILDE---PT------SGIDP 165 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~---~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-~~P~lllLDE---Pt------sgLD~ 165 (321)
.... .. .......+ .++.+..+..+..+|+|++|+..+++++. .+|++++||| |+ +++|+
T Consensus 229 ~~q~-----~~--~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~ 301 (365)
T 1lw7_A 229 GHQR-----YI--DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQ 301 (365)
T ss_dssp HHHH-----HH--HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------C
T ss_pred HHHH-----HH--HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccH
Confidence 2110 00 00000000 11111123344567788888888888874 6999999999 65 58999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
..+..+.+.++++. +.|.+|++++|. .+.++ |+++.++++ ++..++++++.
T Consensus 302 ~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 302 KQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 99999999998875 458999999975 44444 666655543 33455555553
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.68 E-value=8.1e-18 Score=162.85 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=88.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCccc-----CeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSK-----KQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|...+.+. ..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~-------------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE-------------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE--------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee--------------
Confidence 455554 7899999999999999999999999999998 89997654332 2455555530
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
+++ .+..+ +.+|+++|..+|+++++|||+ |+.... ..++.
T Consensus 191 ----------------------~g~-----~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~- 230 (372)
T 2ewv_A 191 ----------------------VGE-----DTKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRA- 230 (372)
T ss_dssp ----------------------BTT-----TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-
T ss_pred ----------------------cCC-----CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-
Confidence 121 12334 469999999999999999999 776543 33433
Q ss_pred HhCCceEEEecCChhHHhhcCEEE
Q psy106 179 AESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 179 ~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
+..|.+|+.++|+.+..+.|||++
T Consensus 231 ~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 231 AETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HhcCCEEEEEECcchHHHHHHHHH
Confidence 356899999999966333366653
No 125
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.67 E-value=1.8e-19 Score=154.73 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=73.3
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC----eEEEEcCCCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK----QLGFMPQQIS 85 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~----~ig~v~Q~~~ 85 (321)
+.+++++.|++ +.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.+.. .-.++||++.
T Consensus 9 ~~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~ 85 (158)
T 1htw_A 9 PDEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD 85 (158)
T ss_dssp CSHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE
T ss_pred CCHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc
Confidence 34456788887 66999999999999999999999999999999999999 99999999886541 1137999998
Q ss_pred CCCCCCHHHHHHHH
Q psy106 86 LYPEFTIDEMICYY 99 (321)
Q Consensus 86 l~~~ltv~e~l~~~ 99 (321)
+| .+|+.||+.+.
T Consensus 86 l~-~ltv~e~l~~~ 98 (158)
T 1htw_A 86 LY-RLADPEELEFM 98 (158)
T ss_dssp CT-TCSCTTHHHHS
T ss_pred cc-cCCcHHHHHHc
Confidence 88 89999998653
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.67 E-value=1.2e-16 Score=142.83 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=85.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG--QNVL-----NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p-----~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
-+++|++++|+||||||||||++.+++ +.+| ..|.+++++. ..+ +... +.-.....+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~-----------~~~----~~~~-~~~~~~~~g 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE-----------GTF----RPER-LLAVAERYG 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-----------SCC----CHHH-HHHHHHHTT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC-----------CCc----CHHH-HHHHHHHcC
Confidence 489999999999999999999999999 5665 4455555433 111 1111 111111222
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------H-----HH
Q psy106 105 MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRR-VSLAITLL--HDPELLILDEPTSGIDPV-------I-----AE 169 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQR-v~iA~aL~--~~P~lllLDEPtsgLD~~-------~-----~~ 169 (321)
...++ +++.+. .....+..+... +.-+.+++ .+|+++++|||++.+|+. . ..
T Consensus 84 ~~~~~-------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 84 LSGSD-------VLDNVA------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp CCHHH-------HHHTEE------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred CCHHH-------HhhCeE------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 22211 111111 112244444332 33333343 589999999999999985 3 34
Q ss_pred HHHHHHHHHH-hCCceEEEecCChhHH-------------------h-hcCEEEEEeCC
Q psy106 170 EIWNHLLYLA-ESGRTILITTHYIDEA-------------------K-KSHMIGLMRKG 207 (321)
Q Consensus 170 ~i~~ll~~l~-~~g~tIil~tH~l~~~-------------------~-~~drv~il~~G 207 (321)
+++..+.+++ +.|.|||+++|..... + .||++++|+.|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 4555666665 4599999999976543 2 38999999865
No 127
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.66 E-value=3.9e-17 Score=157.44 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEEC-Ccc-----cCeEEEEcCCCCCCCCCCHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLS-ITS-----KKQLGFMPQQISLYPEFTIDEMIC 97 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~-g~~-----~~~ig~v~Q~~~l~~~ltv~e~l~ 97 (321)
.++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.+. |.. ...++++||+..+++..++.++.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~- 282 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG- 282 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh-
Confidence 46777765 4899999999999999999999999999 999999886 532 35799999999888888888741
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 98 YYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++.+.++..+.+.++++.+++.. .++++.+|| ||+||++||+++
T Consensus 283 ----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 ----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp ----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred ----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 234555555566677888888865 688899999 999999999875
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.65 E-value=4e-20 Score=175.10 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=97.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC--------CCCccEEEECCccc------------------------CeEEEE---c
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN--------VLNGGNIHLSITSK------------------------KQLGFM---P 81 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~--------~p~~G~I~~~g~~~------------------------~~ig~v---~ 81 (321)
++++|+|+||||||||+|+|+|+. .|+.|+|.++|... +.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999987 78999999877542 125555 5
Q ss_pred CCCCCCCCCCHHHHHHHH--HHH-hCC-CHHHHHH--HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 82 QQISLYPEFTIDEMICYY--GLI-YGM-SLQQIKE--KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~--~~~-~~~-~~~~~~~--~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
|++.+++++++.|+..+. ... ... ..+.... .++.++..+++....+...++|+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 666655566666655432 000 000 0000000 011111122332221222379999999999999999999987
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
||| .++.+.+++++ .+.||+++||+...++
T Consensus 164 -de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 164 -GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLG 193 (318)
T ss_dssp -SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGG
T ss_pred -CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHH
Confidence 999 67888888875 5899999999754443
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.63 E-value=1.5e-17 Score=166.09 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=104.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEF 90 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~l 90 (321)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ++++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4789999999999999999999999999999999999999999964321 3589999998888888
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh-cCC-CEEEEeCCCCCCCHHHH
Q psy106 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL-HDP-ELLILDEPTSGIDPVIA 168 (321)
Q Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-~~P-~lllLDEPtsgLD~~~~ 168 (321)
++++|+.+... .+.. . .+++..|... .. ..|-.-.+|++.+++++. ..| +++|...|++|.|...
T Consensus 363 tV~e~l~~a~~-~~~D------v--VLIDTaGrl~--~~-~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~- 429 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------V--LIADTAGRLQ--NK-SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS- 429 (503)
T ss_dssp HHHHHHHHHHH-TTCS------E--EEECCCCSCC--CH-HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH-
T ss_pred HHHHHHHHHHh-cCCC------E--EEEeCCCccc--hh-hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH-
Confidence 99999987532 1110 0 0111111111 10 112223358888998774 456 4565666998876552
Q ss_pred HHHHHHHHHHH-hCCceEEEecCChhH
Q psy106 169 EEIWNHLLYLA-ESGRTILITTHYIDE 194 (321)
Q Consensus 169 ~~i~~ll~~l~-~~g~tIil~tH~l~~ 194 (321)
.++.++ .-|.|.+++|| ++.
T Consensus 430 -----~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 430 -----QAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp -----HHHHHHHHTCCSEEEEEC-GGG
T ss_pred -----HHHHHHhhcCCCEEEEEc-CCC
Confidence 344444 35899999999 555
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.62 E-value=4.2e-17 Score=155.48 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=106.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
..++|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ..+.|++|...++|.+++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999977653 1356999999999999999998
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll 175 (321)
.+.... +.. . .+++..+... .... +++.-.+++++..++.+++||.++. +.+.+.+
T Consensus 205 ~~~~~~-~~d------~--vliDtaG~~~~~~~l-------~~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~ 261 (328)
T 3e70_C 205 QHAKAR-GID------V--VLIDTAGRSETNRNL-------MDEMKKIARVTKPNLVIFVGDALAG-------NAIVEQA 261 (328)
T ss_dssp HHHHHH-TCS------E--EEEEECCSCCTTTCH-------HHHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHH
T ss_pred HHHHhc-cch------h--hHHhhccchhHHHHH-------HHHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHH
Confidence 764321 100 0 0111112211 1122 3333458999999998999996554 3455556
Q ss_pred HHHH-hCCceEEEecCChhH---------Hhh-cCEEEEEeCCEE
Q psy106 176 LYLA-ESGRTILITTHYIDE---------AKK-SHMIGLMRKGIL 209 (321)
Q Consensus 176 ~~l~-~~g~tIil~tH~l~~---------~~~-~drv~il~~G~i 209 (321)
+.+. +.+.|+|++||.-.. +.. .-.|.++..|+-
T Consensus 262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 6665 458999999994321 112 346677766653
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.62 E-value=1.5e-16 Score=137.08 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=79.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
+|++++|+.++|.||||||||||++++++.+.|++|.. +.| ++..+.+.....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---------~~~----------~~~~~~~~~~~~-------- 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---------GYF----------FDTKDLIFRLKH-------- 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---------CCE----------EEHHHHHHHHHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---------EEE----------EEHHHHHHHHHH--------
Confidence 56778899999999999999999999999987766621 111 233333221110
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEe
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGRTILIT 188 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~tIil~ 188 (321)
...... .. -+...+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++
T Consensus 85 -------~~~~~~----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 85 -------LMDEGK----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp -------HHHHTC----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------HhcCch----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 000000 00 0122244999999999985 999999999999998887789999999
Q ss_pred cCChh
Q psy106 189 THYID 193 (321)
Q Consensus 189 tH~l~ 193 (321)
||...
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99764
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.61 E-value=1.1e-15 Score=147.20 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCCccChHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 128 RKCGSLSGGQQRRV------SLAITLLHD-PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 128 ~~~~~LSgGqkQRv------~iA~aL~~~-P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
+++.+||||||||+ ++|+||+.+ |+++||||||+|||+..+..+.+.|.++.+ +.+||++||+++....||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRELEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGGGGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHHHHhhCCE
Confidence 45679999999988 567899999 999999999999999999999999988743 4689999999875445999
Q ss_pred EEEEe
Q psy106 201 IGLMR 205 (321)
Q Consensus 201 v~il~ 205 (321)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 133
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.60 E-value=1.1e-18 Score=175.55 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=112.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEcCCCC-----------
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMPQQIS----------- 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~Q~~~----------- 85 (321)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|++.+... ..+++..|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 3478899999999999999999999999999999999999999999977541 34566655422
Q ss_pred -----------CCCCCCHHHHHHHHHHHh-CCC------HHHHHHHHHHHHHH-cCCcc-----cc---CCCCccChHHH
Q psy106 86 -----------LYPEFTIDEMICYYGLIY-GMS------LQQIKEKAEYLQAL-LHLNH-----FK---RKCGSLSGGQQ 138 (321)
Q Consensus 86 -----------l~~~ltv~e~l~~~~~~~-~~~------~~~~~~~~~~ll~~-~~l~~-----~~---~~~~~LSgGqk 138 (321)
++..++..|++.+....+ +.. .....+.+..+... .++.. .+ .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 123456666554443332 210 01111222222111 11211 11 23446899999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE--ecCChhHHhh-cC
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI--TTHYIDEAKK-SH 199 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil--~tH~l~~~~~-~d 199 (321)
||.++|. + | |+||||.....+++.+.++.+.|.|+++ +||++++++. |+
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9987752 2 7 9999999888888888777767899885 9999999876 74
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.58 E-value=2.7e-16 Score=154.45 Aligned_cols=146 Identities=20% Similarity=0.227 Sum_probs=92.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----------CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----------VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDE 94 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-----------~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e 94 (321)
-++++|+++.|+.++|+|+||||||||+++|+|.. .|+.|.+.+++. .--.+.+.+.+.... .+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~---~~~~l~DtpGli~~a--~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE---ERFTLADIPGIIEGA--SE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS---CEEEEEECCCCCCCG--GG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc---ceEEEEeccccccch--hh
Confidence 47999999999999999999999999999999983 333444433320 011233334333211 01
Q ss_pred HHHHHHHHhCCCHHHHH--HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy106 95 MICYYGLIYGMSLQQIK--EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~--~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~ 172 (321)
+ .++.....+ ++++.++..+++. ++++.+||+||+|++++|++|+.+|.++++ +.+|+..+ ..+
T Consensus 222 ~-------~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~ 287 (416)
T 1udx_A 222 G-------KGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAV 287 (416)
T ss_dssp S-------CCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHH
T ss_pred h-------hhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHH
Confidence 0 011111000 1111122222222 456788999999999999999999999999 99999877 444
Q ss_pred HHHHH-HHhCCceEEEecC
Q psy106 173 NHLLY-LAESGRTILITTH 190 (321)
Q Consensus 173 ~ll~~-l~~~g~tIil~tH 190 (321)
+.+.+ +.+.|.+++++|.
T Consensus 288 ~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 288 KALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEC
Confidence 44444 4456777776664
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.57 E-value=1.7e-15 Score=128.29 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=72.2
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
+|+++ +|+.++|+||||||||||++++++...+ +| .++.|++..... ..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g---------~~~~~~~~~~~~-~~--------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG---------KNAAYIDAASMP-LT--------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT---------CCEEEEETTTSC-CC---------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC---------CcEEEEcHHHhh-HH---------------
Confidence 45666 8999999999999999999999998876 45 123344432211 11
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy106 105 MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~t 184 (321)
+++.+|++|++|||++ +|+..++.+++++.++.++|++
T Consensus 79 -----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~ 116 (149)
T 2kjq_A 79 -----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKG 116 (149)
T ss_dssp -----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCC
T ss_pred -----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCc
Confidence 2357899999999998 6666689999999998877888
Q ss_pred -EEEecCC
Q psy106 185 -ILITTHY 191 (321)
Q Consensus 185 -Iil~tH~ 191 (321)
+|++||.
T Consensus 117 ~iiits~~ 124 (149)
T 2kjq_A 117 FLLLGSEY 124 (149)
T ss_dssp EEEEEESS
T ss_pred EEEEECCC
Confidence 8888884
No 136
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=2.8e-18 Score=167.26 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=119.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCccEEEECCccc----------Ce---EEEEcCCCCC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG------------QNVLNGGNIHLSITSK----------KQ---LGFMPQQISL 86 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G------------l~~p~~G~I~~~g~~~----------~~---ig~v~Q~~~l 86 (321)
++++|..+||+|+||||||||+|+|+| .+.|+.|.+.+.+... +. ..++++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 6779999999987321 22 3478888888
Q ss_pred CCCCCHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCC--CEEEEeCCCCC
Q psy106 87 YPEFTIDEMI--CYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDP--ELLILDEPTSG 162 (321)
Q Consensus 87 ~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P--~lllLDEPtsg 162 (321)
++..+..|++ .|...++.. +.++..+... .+..+..+|+++ +| ++.++|||+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~---------d~il~Vvd~~-~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV---------DAIYQVVRAF-DDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC---------SEEEEEEECC-CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH---------HHHHHHHhcc-ccceeeeecccc------------CcchhhhhchhhhHH
Confidence 8888776655 333322211 0111111111 134555577653 99 99999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCceEEEecCChhHHhh-cCEEE-EEeCC-EEEEecCh
Q psy106 163 IDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIG-LMRKG-ILLEESPP 215 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l-~~~g~tIil~tH~l~~~~~-~drv~-il~~G-~i~~~g~~ 215 (321)
+|+...++.++.+... .+.|.|++ +|++.+++. |+++. +|++| +++..+++
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999988 66688864 999999977 99998 99999 88776654
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.56 E-value=2.1e-18 Score=163.94 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=117.8
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCccEEEECCcc--
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKS-------TIYSLLGASGCGKTTLLSCITGQN----VLNGGNIHLSITS-- 73 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~G-------ei~~llGpNGaGKSTLl~~l~Gl~----~p~~G~I~~~g~~-- 73 (321)
.+++.+++++.||+ ..+++++++.+++| +.++|.||||+|||||+++|+|.+ .|++|++..++.+
T Consensus 17 ~~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 17 QFLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp CTTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred HHcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 34667788888887 56999999999887 899999999999999999999987 7778877654432
Q ss_pred -------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHH
Q psy106 74 -------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 74 -------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~ 142 (321)
...|+|++|...+.+ ++.|++......++.. .....+.+...+..+.+.....++..||+|++||++
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCS
T ss_pred HHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcC
Confidence 246999999887765 7888774333222211 111122333333334443356778899999999986
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCE
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHM 200 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~dr 200 (321)
++ .+|||....++.++|++.++ .+ ++|+.+.+.. |++
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 55 78899999999999988763 34 3688777655 554
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.54 E-value=2e-18 Score=169.72 Aligned_cols=139 Identities=16% Similarity=0.039 Sum_probs=96.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------C
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------K 75 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~ 75 (321)
++++++++.|+. ..+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.+.+. +
T Consensus 144 ~~l~~Lg~~~~~--~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHN--HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHH--HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHH--HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 455666666654 4477887 54 89999999999999999999999999999999998865432 2
Q ss_pred eEEEEc---------CCCCC--CCC----CCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCccccCCCCccChH
Q psy106 76 QLGFMP---------QQISL--YPE----FTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136 (321)
Q Consensus 76 ~ig~v~---------Q~~~l--~~~----ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG 136 (321)
++|+.| |+|.+ +.+ .|+.+++.+...-+ ........+.+. .+..+++... ..+.+||||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~-~~~~~LSgg 297 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPF-LISSSLLGV 297 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHH-HHHHHEEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHH-HHHHHHHHH
Confidence 345544 88765 343 57888887643111 001111112233 3445566543 367899999
Q ss_pred HHHHHHHHHHHhcCCCEEE
Q psy106 137 QQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 137 qkQRv~iA~aL~~~P~lll 155 (321)
|+|| |||+|+.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999876
No 139
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.54 E-value=2.4e-16 Score=148.20 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=83.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCccc---------CeEEEEcCCCCCC-----CCCCHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK---------KQLGFMPQQISLY-----PEFTIDE 94 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~---------~~ig~v~Q~~~l~-----~~ltv~e 94 (321)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+.. +.+||++|.|.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999998 66532 2589999998654 67899 8
Q ss_pred HH--HHH------HHHhCC-CHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHH
Q psy106 95 MI--CYY------GLIYGM-SLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 95 ~l--~~~------~~~~~~-~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~ 145 (321)
++ .|. .++++. ...+...++.++++.+++.. .++++..|||.++|++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77 343 122221 22233456788899999964 57888999999999999986
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=9.1e-15 Score=138.11 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=77.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITG-QNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G-l~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
.+.|.||||+||||+++++++ +..|+.|.+.++|... ..+++++|...+.-+.+- . .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------CCcchHH
Confidence 389999999999999999999 8899999998876432 457788876643211110 0 0001111
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEec
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~t 189 (321)
.++.++.+.+... .+... +||| +..+|+++|+|||++ ||+..+..+++.+.+.. .+.++|++|
T Consensus 109 ~~~~i~~~~~~~~---~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t 171 (354)
T 1sxj_E 109 IQELLKEVAQMEQ---VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVC 171 (354)
T ss_dssp HHHHHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEE
T ss_pred HHHHHHHHHHhcc---ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEe
Confidence 2222222211111 11222 5676 788999999999999 99999999999998764 468999999
Q ss_pred CChhHH
Q psy106 190 HYIDEA 195 (321)
Q Consensus 190 H~l~~~ 195 (321)
|+++.+
T Consensus 172 ~~~~~l 177 (354)
T 1sxj_E 172 DSMSPI 177 (354)
T ss_dssp SCSCSS
T ss_pred CCHHHH
Confidence 998654
No 141
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.53 E-value=2e-17 Score=155.82 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=99.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCcc
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTV-------------------QKSTIYSLLGASGCGKTTLLSCITGQNV--LNGG 65 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i-------------------~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p~~G 65 (321)
.+|+++||++.|+ ++++++|+++ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 3588899999994 3899999988 9999999999999999999999999988 9999
Q ss_pred EEEE---CCccc-----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH
Q psy106 66 NIHL---SITSK-----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ 137 (321)
Q Consensus 66 ~I~~---~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq 137 (321)
+|.+ +|... +.+|++ |...+++.+++.+++.+...+..... . ...+....+.+
T Consensus 112 ~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------------~---i~~P~~~~~~~- 172 (308)
T 1sq5_A 112 RVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------------N---VTAPVYSHLIY- 172 (308)
T ss_dssp CEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------------C---EEECCEETTTT-
T ss_pred eEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------------c---eeccccccccc-
Confidence 9999 77543 347788 87777888999999887655432110 0 11111122222
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
+|+..+.+.+.+|+++|+|.|....++
T Consensus 173 -~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 173 -DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -CcccccceecCCCCEEEECchhhCCCc
Confidence 333333345678999999999998874
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.51 E-value=2.6e-16 Score=147.55 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=84.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH----H--hCCCH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL----I--YGMSL 107 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~----~--~~~~~ 107 (321)
.++.++||.||+|||||||.+.|.+++.+. | ...+.+.+|+|+..+++. +..+|+.+... . .+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccccCCh-HHHHHHhccccccchhhhccCcc
Confidence 478899999999999999999999998763 2 113345566999887754 78888876420 1 11121
Q ss_pred HHHHHHHHHHHHHcCCc------c---ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 108 QQIKEKAEYLQALLHLN------H---FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~------~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
....+...+.++.+... . ...+-..+||||+||+++|++...+|+|+|+||||+++|+..
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 11112233333333221 1 234457899999999999833333999999999999999863
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.50 E-value=9.9e-14 Score=135.53 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=87.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCcc-----EEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSC--ITGQNVLNGG-----NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~--l~Gl~~p~~G-----~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
-|++|++++|+||||||||||++. +.++.+++.| .++++++ ..+ +. +.+...+...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E-----------~~~----~~-~rl~~~a~~~g 237 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE-----------GTF----RP-VRLVSIAQRFG 237 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-----------SCC----CH-HHHHHHHHHTT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC-----------Ccc----CH-HHHHHHHHHcC
Confidence 589999999999999999999994 4577777554 4444433 211 11 11221222223
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCccChHH--HHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHH------------
Q psy106 105 MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ--QRRVSLAITLL--HDPELLILDEPTSGIDPVIA------------ 168 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq--kQRv~iA~aL~--~~P~lllLDEPtsgLD~~~~------------ 168 (321)
.... .+++.+. +.....++ .+.+.-+.+++ .+|+++++|||++.+|+...
T Consensus 238 l~~~-------~vleni~-------~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l 303 (400)
T 3lda_A 238 LDPD-------DALNNVA-------YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303 (400)
T ss_dssp CCHH-------HHHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHH
T ss_pred CChH-------hHhhcEE-------EeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHH
Confidence 3221 1111111 11112233 33333333333 57999999999999997533
Q ss_pred HHHHHHHHHHHh-CCceEEEecCCh-------------------hHHhh-cCEEEEEeCC
Q psy106 169 EEIWNHLLYLAE-SGRTILITTHYI-------------------DEAKK-SHMIGLMRKG 207 (321)
Q Consensus 169 ~~i~~ll~~l~~-~g~tIil~tH~l-------------------~~~~~-~drv~il~~G 207 (321)
.++++.|+++++ .|.|||+++|.. ..++. ||.+++|+++
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 567788888874 599999999982 12344 8998888875
No 144
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.49 E-value=6.8e-17 Score=140.38 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc-------------CeEE----EEcCCCCCCCCCCHHHHH
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK-------------KQLG----FMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~-------------~~ig----~v~Q~~~l~~~ltv~e~l 96 (321)
++++|+||||||||||+++|+|+++|+ .|.|.+++.+. +++| +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 589999999999999999999999998 89999876541 2466 7888765440 00
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-c-CCccccCCCCccChHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CC
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQAL-L-HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL-------ILDEPTSG---ID 164 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~-~-~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll-------lLDEPtsg---LD 164 (321)
. . .+....+.++++. + +++. .-...|||||+||++||||++.+|++. .=|.|..+ +|
T Consensus 77 -------~-~-~~~~a~l~~~i~~~l~g~dt--~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 77 -------V-S-EEEGNDLDWIYERYLSDYDL--VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp -------C-C-HHHHTCHHHHHHHHTTTCSE--EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred -------C-C-hhhhhCHHHHHHhhCCCCCE--EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 0 0 0101122333333 2 3321 111239999999999999999999873 23554322 33
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy106 165 PVIAEEIWNHLLYLAESG 182 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g 182 (321)
......+.+.|.+...+|
T Consensus 146 ~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 146 RDEVERIAEFILSLLREG 163 (171)
T ss_dssp TTCHHHHHHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 445567777776655444
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.45 E-value=2.9e-16 Score=139.01 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=90.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC----CHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM----SLQ 108 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~----~~~ 108 (321)
.++|+++||+||||||||||+++|+|+++|+ | ..+|+++++...++. +..+++.... ..+. ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g---------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G---------LPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETFDFE 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T---------CCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C---------CceEEEecCCCcCCH-HHHHHhcccc-cCCCCchhhHH
Confidence 5789999999999999999999999999875 4 236677766543322 2222221000 0111 111
Q ss_pred HHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE
Q psy106 109 QIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLA-ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 109 ~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA-~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tI 185 (321)
...+.+..+...-.+. ..++ ...+|+||+||+++| ++++.++.++++|||. +. ++.+.--.+
T Consensus 87 ~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~---~l~~~~d~~ 151 (208)
T 3c8u_A 87 GFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WR---DLTAIWDVS 151 (208)
T ss_dssp HHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GG---GGGGTCSEE
T ss_pred HHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch-----------hH---HHHHhcCEE
Confidence 1122222222211121 1233 345799999999998 8888888888888883 11 112222467
Q ss_pred EEecCChhHH-hh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 186 LITTHYIDEA-KK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 186 il~tH~l~~~-~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++++++.+.. ++ +.|. ++.|. +.+++..
T Consensus 152 i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~ 181 (208)
T 3c8u_A 152 IRLEVPMADLEARLVQRW--LDHGL-----NHDAAVA 181 (208)
T ss_dssp EEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHH
Confidence 8888988873 44 6662 34453 5555544
No 146
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.42 E-value=1.9e-13 Score=128.36 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=94.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
++|++++++|||||||||+++.|++.+.+++| +++.++.+++. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G---------~~V~lv~~D~~---r~~a~eqL~~~~~------------ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH---------KKIAFITTDTY---RIAAVEQLKTYAE------------ 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------CCEEEEECCCS---STTHHHHHHHHHT------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CEEEEEecCcc---cchHHHHHHHHHH------------
Confidence 57999999999999999999999999988777 35677777662 3355555543221
Q ss_pred HHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCceEEE-ec
Q psy106 114 AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA---ESGRTILI-TT 189 (321)
Q Consensus 114 ~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~---~~g~tIil-~t 189 (321)
..+++... ..+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ +|
T Consensus 159 ------~~gl~~~~----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 159 ------LLQAPLEV----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp ------TTTCCCCB----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred ------hcCCCeEe----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 12222110 112 2334556664 4999999999 99999887766666554433 12345555 59
Q ss_pred CChhHHhh-cCEEEEEeCCEEEEe
Q psy106 190 HYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 190 H~l~~~~~-~drv~il~~G~i~~~ 212 (321)
|..+++.. |+++..+..+.++..
T Consensus 224 ~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 224 AKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp BCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEe
Confidence 99888876 877666666777664
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.3e-17 Score=154.84 Aligned_cols=135 Identities=15% Similarity=0.157 Sum_probs=95.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcCCC-CCCCCCCH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQQI-SLYPEFTI 92 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q~~-~l~~~ltv 92 (321)
..+++++++++++| ++|+||||||||||+|+|+|...+ |.+.++|.+. ++++++||.. ...+.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45889999999999 999999999999999999999876 6888877542 3466777764 34455555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC----------
Q psy106 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS---------- 161 (321)
Q Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts---------- 161 (321)
.|++.......+ . ... .... ..++.+.+|||||+||+.+++|+.++|++| |||+.
T Consensus 109 ~Deid~~~~~r~---~---~~~------~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~ 174 (274)
T 2x8a_A 109 FDEVDALCPRRS---D---RET------GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF 174 (274)
T ss_dssp EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred eehhhhhhcccC---C---Ccc------hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence 555543211100 0 000 0111 135667889999999999999999999985 99864
Q ss_pred --CCCHHHHHHHHHHH
Q psy106 162 --GIDPVIAEEIWNHL 175 (321)
Q Consensus 162 --gLD~~~~~~i~~ll 175 (321)
--|...+.++++.+
T Consensus 175 ~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 175 VGLPPPADRLAILKTI 190 (274)
T ss_dssp CCSCCHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHH
Confidence 34777777777654
No 148
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.41 E-value=2.4e-18 Score=154.49 Aligned_cols=160 Identities=16% Similarity=0.077 Sum_probs=61.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCC------------CccEEEECCcccCeEEEEcCCCCCCCCC
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-GQNVL------------NGGNIHLSITSKKQLGFMPQQISLYPEF 90 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~-Gl~~p------------~~G~I~~~g~~~~~ig~v~Q~~~l~~~l 90 (321)
...+++||++++|+++||+||||||||||+++|+ |+.++ +.|++ + .++|.|+++..+..+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~-----g~~~~~~~~~~~~~~ 87 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E-----GKDYYFVDREEFLRL 87 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B-----TTTBEECCHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C-----CCeEEEecHHHhhhh
Confidence 4678999999999999999999999999999999 99843 33322 1 233555544333222
Q ss_pred CHHHHHHH----HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHH-HHH-HHHhcCCCEEEEeCCCCCCC
Q psy106 91 TIDEMICY----YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRV-SLA-ITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 91 tv~e~l~~----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv-~iA-~aL~~~P~lllLDEPtsgLD 164 (321)
+..+++.. ....++.+.. .+...++....-..+-.+. -....+++. .-+ ..++..|+..++||++.+.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~ 162 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRR 162 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECT----THHHHHHHTCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC-----
T ss_pred hhcCceehhhhhccccCCCCHH----HHHHHHHcCCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcC
Confidence 22222110 0011111111 1222222211100111110 011223333 111 23456778888899999998
Q ss_pred HHHHHHHHHHHHHHHh-----CCceEEEecCChhHH
Q psy106 165 PVIAEEIWNHLLYLAE-----SGRTILITTHYIDEA 195 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~-----~g~tIil~tH~l~~~ 195 (321)
..+...+.+.+..... ....+++++|+++++
T Consensus 163 ~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~ 198 (231)
T 3lnc_A 163 ADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198 (231)
T ss_dssp ---------CHHHHHHHHTTGGGSSEEEECSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHH
Confidence 8887777776655431 123444555555544
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.41 E-value=2.8e-15 Score=140.70 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=71.2
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCccc---------CeEEEEcCCCC-------------
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK---------KQLGFMPQQIS------------- 85 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~---------~~ig~v~Q~~~------------- 85 (321)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|... +.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999998 66532 35899999985
Q ss_pred ---CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccCh
Q psy106 86 ---LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSG 135 (321)
Q Consensus 86 ---l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSg 135 (321)
+++++|+ +|+.|....+ ..+...++.++++.++++ . .++++.+||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4788888 8887642111 122345678889999995 3 5777888885
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.39 E-value=1.7e-13 Score=128.39 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=92.6
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPE 89 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ 89 (321)
.++++++.|+. .. ++++|+ +|++++++||||+||||+++.|++++.+.+|+|.+.+.+.++.+
T Consensus 78 ~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~----------- 140 (295)
T 1ls1_A 78 VYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA----------- 140 (295)
T ss_dssp HHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH-----------
T ss_pred HHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh-----------
Confidence 45567777865 32 788998 99999999999999999999999999998898887654432110
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP-TSGIDPVIA 168 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP-tsgLD~~~~ 168 (321)
..+.+. ...+..+++..... ...+..+.+|.+++++...+++++|+||| ++++|....
T Consensus 141 --~~~ql~------------------~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 141 --AREQLR------------------LLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp --HHHHHH------------------HHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred --HHHHHH------------------HhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 001010 01223344322110 01234456789999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q psy106 169 EEIWNHLLYL 178 (321)
Q Consensus 169 ~~i~~ll~~l 178 (321)
.++.++...+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8888877654
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.38 E-value=9.8e-14 Score=131.00 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=81.1
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCH
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL 107 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~ 107 (321)
.++++.++|++++++|||||||||+++.|++.+++++|+|.+.+.+..+.+ ..+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-------------a~eq------------ 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-------------AIEQ------------ 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-------------HHHH------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-------------HHHH------------
Confidence 456667899999999999999999999999999998888877544321110 1111
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCccChHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRV---SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv---~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
...+.+..+++. +..+|+|+.|++ ++++|+..+|+++|+|||.. +.....+++.++++
T Consensus 151 ------L~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 151 ------LKIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp ------HHHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred ------HHHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 112233445542 235689999999 99999999999999999974 34455556555554
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.36 E-value=5.3e-17 Score=143.21 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=79.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCccEEEECCcccCeE------EEEcCCCCCCCCCCHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV-------------LNGGNIHLSITSKKQL------GFMPQQISLYPEFTIDE 94 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~-------------p~~G~I~~~g~~~~~i------g~v~Q~~~l~~~ltv~e 94 (321)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+...+ ..++|+..++ +.++.+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~-~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIE-HAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEE-EEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEe-eeeecC
Confidence 5799999999999999999999999875 55554 233221000 0001111111 111111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHH----HHHHHH-HHhcCCCEEEEeCCCCCCCHHHHH
Q psy106 95 MICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQR----RVSLAI-TLLHDPELLILDEPTSGIDPVIAE 169 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQ----Rv~iA~-aL~~~P~lllLDEPtsgLD~~~~~ 169 (321)
|+ ++.+..+ +...++.......+.. -.|-++ ++ .|+ +++.+|++++|||||+++|..+.+
T Consensus 79 n~------~g~~~~~----i~~~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 79 NL------YGTSKEA----VRAVQAMNRICVLDVD----LQGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp EE------EEEEHHH----HHHHHHTTCEEEEECC----HHHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred cc------CCCCHHH----HHHHHHcCCcEEEECC----HHHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 21 2222222 2223332111001100 011111 12 456 788899999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEe
Q psy106 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMR 205 (321)
Q Consensus 170 ~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~ 205 (321)
.+.+.|.+..+. +..+| .. ..||++++++
T Consensus 144 ~i~~~l~~~~~~----~~~a~--~~-~~~D~iivnd 172 (198)
T 1lvg_A 144 SLAKRLAAARTD----MESSK--EP-GLFDLVIIND 172 (198)
T ss_dssp HHHHHHHHHHHH----TTGGG--ST-TTCSEEEECS
T ss_pred HHHHHHHHHHHH----HHHhh--cc-CCceEEEECC
Confidence 999988776542 23456 11 4599987665
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.36 E-value=1.6e-13 Score=122.35 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=86.8
Q ss_pred ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHH-HcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 24 YVLDKL-CMTVQKSTIYSLLGASGCGKTTLLSCI-TGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 24 ~iL~~i-sl~i~~Gei~~llGpNGaGKSTLl~~l-~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
+.|+.+ .--+++|++++|.||||||||||+..+ .+..++..+.++++.. .+..+..... .
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-----------------~~~~~~~~~~-~ 71 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-----------------EHPVQVRQNM-A 71 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----------------SCHHHHHHHH-H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-----------------CCHHHHHHHH-H
Confidence 356666 667999999999999999999996555 4444433333333221 1222211111 1
Q ss_pred HhCCCHHHHHHHHHHH--HH----HcCC-ccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYL--QA----LLHL-NHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGI--DPVIAEE 170 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~l--l~----~~~l-~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgL--D~~~~~~ 170 (321)
..+...++.... ..+ .+ .++. ...+.....-+....+....++.++ .+|+++++|+|++.+ |+..+.+
T Consensus 72 ~~g~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~ 150 (247)
T 2dr3_A 72 QFGWDVKPYEEK-GMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARS 150 (247)
T ss_dssp TTTCCCHHHHHH-TSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHH
T ss_pred HcCCCHHHHhhC-CcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHH
Confidence 112221110000 000 00 0000 0000111111122333333444444 589999999999988 6644555
Q ss_pred HHHHHHHH-HhCCceEEEecCChhH--------Hhh-cCEEEEEeC
Q psy106 171 IWNHLLYL-AESGRTILITTHYIDE--------AKK-SHMIGLMRK 206 (321)
Q Consensus 171 i~~ll~~l-~~~g~tIil~tH~l~~--------~~~-~drv~il~~ 206 (321)
++..+.++ ++.|.||++++|.... ++. ||.++.|+.
T Consensus 151 ~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 151 IILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 55555554 4679999999998765 344 999999874
No 154
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.33 E-value=2.4e-14 Score=135.23 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=67.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCccc-------Ce-EEEEcCCCCCCC----CCCHHHH
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK-------KQ-LGFMPQQISLYP----EFTIDEM 95 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~-------~~-ig~v~Q~~~l~~----~ltv~e~ 95 (321)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+.. +. +||++|.|.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 667899999999999999999999999999999999987 55432 11 799999997765 6889 88
Q ss_pred HH-HHHHH---------hCC-CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHH
Q psy106 96 IC-YYGLI---------YGM-SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRR 140 (321)
Q Consensus 96 l~-~~~~~---------~~~-~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQR 140 (321)
+. ++..+ .+. ...+...++.++++.+++.. ..+.+.+|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 83 22211 111 11222356778889999865 445566777888874
No 155
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.27 E-value=3.4e-14 Score=123.89 Aligned_cols=63 Identities=16% Similarity=0.348 Sum_probs=45.0
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---------cCeEEEEcCCCCCCCCCCHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---------KKQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---------~~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
|+++++|++++|+||||||||||+++|+|+.+ .+.+.+.. ...++|+||++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 67889999999999999999999999999964 35554422 23578999987766655555443
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.26 E-value=5.5e-12 Score=120.97 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=87.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
-+++|+++.|.||||||||||+..++......+|. +.|+.-+..+.+ . .+...+...+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~----------vlyi~~E~~~~~-----~----~a~~lG~~~~--- 114 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI----------AAFIDAEHALDP-----E----YAKKLGVDTD--- 114 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC----------EEEEESSCCCCH-----H----HHHHTTCCGG---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe----------EEEEECCCCcCH-----H----HHHHcCCCHH---
Confidence 58899999999999999999988887544333332 445544432211 0 0111121110
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHH
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHD--PELLILDEPTSGI----------DP---VIAEEIWNHLL 176 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~--P~lllLDEPtsgL----------D~---~~~~~i~~ll~ 176 (321)
.+. ..+ ..+. .|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++
T Consensus 115 ----------~l~-i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 115 ----------SLL-VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp ----------GCE-EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred ----------HeE-Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 000 011 1122 3456678888765 9999999999998 33 22223444554
Q ss_pred HH----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCEEEEecC
Q psy106 177 YL----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 177 ~l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~i~~~g~ 214 (321)
++ ++.|.|||+++|... .++. ||.++.++.++.+..|+
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 44 456999999999643 1345 99888888776654443
No 157
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.24 E-value=2.3e-12 Score=128.49 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=50.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
++.+++... ..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 345555432 3489999999999 9999999999999999999999999999999998754
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.22 E-value=4.3e-11 Score=118.19 Aligned_cols=169 Identities=12% Similarity=0.106 Sum_probs=107.3
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHH-HHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY-GLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~ 102 (321)
..|+++..-+++|+++.|.||+|+|||||+..+++...+..| ..+.|+.-+ ++..+..... +..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---------~~Vl~~s~E------~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN---------ENVAIFSLE------MSAQQLVMRMLCAE 255 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS---------CCEEEEESS------SCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---------CcEEEEECC------CCHHHHHHHHHHHH
Confidence 468888878999999999999999999999999987655433 123443322 3333322111 111
Q ss_pred hC----------CCHHHHHHHHHHHHHHcCC-ccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----
Q psy106 103 YG----------MSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDP---- 165 (321)
Q Consensus 103 ~~----------~~~~~~~~~~~~ll~~~~l-~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~---- 165 (321)
.+ +...+. +++...++.+.. ...-.....+|.++.+ +.|++++ ++|+++++|+|+...++
T Consensus 256 ~~~~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 256 GNINAQNLRTGKLTPEDW-GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HTCCHHHHHTSCCCHHHH-HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred cCCCHHHHhcCCCCHHHH-HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 11 222222 223333333322 2121224579999887 5666666 68999999999987743
Q ss_pred ----HHHHHHHHHHHHHH-hCCceEEEecC---------C--hh--------HHhh-cCEEEEEeCCEEE
Q psy106 166 ----VIAEEIWNHLLYLA-ESGRTILITTH---------Y--ID--------EAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 166 ----~~~~~i~~ll~~l~-~~g~tIil~tH---------~--l~--------~~~~-~drv~il~~G~i~ 210 (321)
....++...|+.++ +.|.+||+++| + +. .+++ ||.|++|+.++..
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 33466777777776 45999999999 3 22 3455 9999999877653
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.21 E-value=8.2e-16 Score=141.75 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=89.1
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEc
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMP 81 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~ 81 (321)
++++.+.|++ ..+++++++++++| ++|+||||||||||+++|++... .|.+.+++.+. ++++++|
T Consensus 52 l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 52 LKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 4455556655 45889999999999 89999999999999999999875 78888876431 3467788
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 82 QQIS-LYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 82 Q~~~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|... ..+.+++.|++......... ...+..+.+.. ...+|||||+||+.+++|+.++|++ +
T Consensus 126 ~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~------------ll~~lsgg~~~~~~i~~a~t~~p~~--l 191 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ------------LLVEMDGFEKDTAIVVMAATNRPDI--L 191 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHH------------HHHHHTTCCTTCCEEEEEEESCTTS--S
T ss_pred HHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHH------------HHHHHhCCCCCCCEEEEEecCCchh--C
Confidence 7753 45566777777433211100 01111122222 2346899999999999999999987 5
Q ss_pred eCC
Q psy106 157 DEP 159 (321)
Q Consensus 157 DEP 159 (321)
|++
T Consensus 192 d~~ 194 (278)
T 1iy2_A 192 DPA 194 (278)
T ss_dssp CHH
T ss_pred CHh
Confidence 654
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.21 E-value=2.5e-13 Score=136.33 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=99.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCccEEEECCcccCeEEEEcCCCCCCCCC--CHHHHHHHHHHH
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--QNVLNGGNIHLSITSKKQLGFMPQQISLYPEF--TIDEMICYYGLI 102 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~l--tv~e~l~~~~~~ 102 (321)
+.+++++.++..+.|.|++||||||++++|.. +..++.|++.+.+.+.+... ++...-+|.+ +|.++.......
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e--l~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE--LSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG--GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh--hhhhccCCcccceeecCHHHHHHH
Confidence 35788888999999999999999999999875 55666677776544443321 1211112222 121222111111
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccc---cCC-CCccChHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHH
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHF---KRK-CGSLSGGQQRRV----------SLAITLLHDPE-LLILDEPTSGIDPVI 167 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~---~~~-~~~LSgGqkQRv----------~iA~aL~~~P~-lllLDEPtsgLD~~~ 167 (321)
......+.+++. +++...+.... +++ ...+|+||+|+. ++|+++...|. ++++||+++-+|..
T Consensus 236 L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~- 313 (512)
T 2ius_A 236 LRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV- 313 (512)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-
Confidence 111124455554 45666666432 222 246899988753 35667788898 89999999988733
Q ss_pred HHHHHHHHHHHH----hCCceEEEecCChh
Q psy106 168 AEEIWNHLLYLA----ESGRTILITTHYID 193 (321)
Q Consensus 168 ~~~i~~ll~~l~----~~g~tIil~tH~l~ 193 (321)
..++.+.+.++. +-|.++|++||.+.
T Consensus 314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 314 GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 344555555543 33889999999987
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.20 E-value=7.2e-16 Score=139.84 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=90.2
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEE
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFM 80 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v 80 (321)
+++++++.|++ ..+++++++++++| ++|+||||||||||+++|++... .|.+.+++.+. ++++++
T Consensus 27 ~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 27 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 44566666665 55899999999999 89999999999999999999875 78888876432 346677
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 81 PQQIS-LYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 81 ~Q~~~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+|... ..+.+++.|++......... ...+..+.+..+ ..+|||||+||+.+++|+.++|++
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~l~g~~~~~~~i~~a~t~~p~~-- 166 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI-- 166 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH------------HHHHHTCCTTCCEEEEEEESCGGG--
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH------------HHHHhCCCCCCCEEEEEccCCchh--
Confidence 77653 45556666776432211110 111112222222 346899999999999999999987
Q ss_pred EeCCC
Q psy106 156 LDEPT 160 (321)
Q Consensus 156 LDEPt 160 (321)
+|++.
T Consensus 167 ld~~l 171 (254)
T 1ixz_A 167 LDPAL 171 (254)
T ss_dssp SCGGG
T ss_pred CCHHH
Confidence 67764
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.12 E-value=3.5e-13 Score=137.72 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=101.9
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-cEEEECCccc----CeEEEEcCCCC--
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSK----KQLGFMPQQIS-- 85 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-G~I~~~g~~~----~~ig~v~Q~~~-- 85 (321)
+++..||. ..+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+.+... ..++++|+...
T Consensus 39 ~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 39 LIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred ccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 34445666 568999999999999999999999999999999999999887 7777755432 46888886431
Q ss_pred --------------------CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-ccccCCCCccChHHHHHHHHH
Q psy106 86 --------------------LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 86 --------------------l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-~~~~~~~~~LSgGqkQRv~iA 144 (321)
.+..+++.+|+..... ................++++. +......+.+|+|++|++..+
T Consensus 117 ~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 117 IVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECC
T ss_pred HHHHHHHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCc
Confidence 0111111111100000 000000000000001122231 111223367999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
+....++.+|++||... |++..+..+.+.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999998875
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.06 E-value=1.2e-11 Score=107.25 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
+.+.+|++++.+|+++++| ||++|+.+..++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3478899999999999999 999999999999998865
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.06 E-value=2.7e-12 Score=116.26 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=42.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
.|+++|++..|+. +|++++ ++++|+||||||||||+++|+|++.|++|+|.++|.+
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 5788888665531 566666 8999999999999999999999999999999987643
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.01 E-value=3e-13 Score=131.18 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=91.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE-CCccc---CeEEEEcCCCC-CCCCCCHHHHHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-SITSK---KQLGFMPQQIS-LYPEFTIDEMICY 98 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~-~g~~~---~~ig~v~Q~~~-l~~~ltv~e~l~~ 98 (321)
.+++++|+++++|++++|+||||||||||+++|+|. .+|.+.. +.... ..+|++||... ++++.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~- 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGES- 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTT-
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHH-
Confidence 578999999999999999999999999999999984 4677765 22111 14677777653 333333221100
Q ss_pred HHHHhCCCHHHHHHHHHHHHH---------------HcCCc--cccCCCCccChHHHHHHHHHHHHhcCCCEEE-EeCCC
Q psy106 99 YGLIYGMSLQQIKEKAEYLQA---------------LLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLI-LDEPT 160 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~---------------~~~l~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll-LDEPt 160 (321)
..............+...++ ...+. ..+.....+++|++||++.+.+++.+|++++ ||+|+
T Consensus 233 -r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~ 311 (377)
T 1svm_A 233 -RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSE 311 (377)
T ss_dssp -TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCT
T ss_pred -hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCH
Confidence 00000000000011122222 00111 1356677899999999999988999999998 99998
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceE
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tI 185 (321)
. .+++++.++|.++
T Consensus 312 ~-----------~l~~RL~~Rg~t~ 325 (377)
T 1svm_A 312 F-----------LLEKRIIQSGIAL 325 (377)
T ss_dssp H-----------HHHTTCTTCHHHH
T ss_pred H-----------HHHHHHHHcCccH
Confidence 7 2455555556543
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.89 E-value=1.1e-09 Score=93.83 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=51.4
Q ss_pred EEEeEEEEeCCCCCcee--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE---------ECC------c
Q psy106 10 RVENAYKRHSSKLPYVL--DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH---------LSI------T 72 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL--~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~---------~~g------~ 72 (321)
.++.|... + ...+ +++++++.+| +++|+|||||||||++++|.+++.+..|... ..+ .
T Consensus 3 ~i~~l~i~--n--f~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 77 (182)
T 3kta_A 3 YIEKLELK--G--FKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPA 77 (182)
T ss_dssp EEEEEEEE--S--BGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CC
T ss_pred eEEEEEEe--C--eEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCC
Confidence 45555543 1 2245 7889999999 9999999999999999999998877666421 122 1
Q ss_pred ccCeEEEEcCCCC
Q psy106 73 SKKQLGFMPQQIS 85 (321)
Q Consensus 73 ~~~~ig~v~Q~~~ 85 (321)
....|.+++|++.
T Consensus 78 ~~~~v~~~f~~~~ 90 (182)
T 3kta_A 78 KYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEEEEEECTT
T ss_pred ceEEEEEEEeCCC
Confidence 2346889998763
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.87 E-value=2.2e-09 Score=103.26 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
-+++|+++.|.||||||||||+..+++...+.+|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 488999999999999999999999998877766655
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.87 E-value=1.7e-10 Score=111.10 Aligned_cols=134 Identities=13% Similarity=0.169 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCccEEEECCcccCeEEEEcCCCCCCCCC---CHHHHHHHHHHH-
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV-----------LNGGNIHLSITSKKQLGFMPQQISLYPEF---TIDEMICYYGLI- 102 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~-----------p~~G~I~~~g~~~~~ig~v~Q~~~l~~~l---tv~e~l~~~~~~- 102 (321)
+++|+|+||||||||++.|+|... |+.|.+.++|... .+.+.+.+...+ .+...-......
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v----~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI----MLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE----EEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE----EEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 399999999999999999999865 5678888877432 122223322221 111110000000
Q ss_pred --------hCCC--H---HHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHH----HHH-hcCCCEEEEeCC
Q psy106 103 --------YGMS--L---QQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLA----ITL-LHDPELLILDEP 159 (321)
Q Consensus 103 --------~~~~--~---~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA----~aL-~~~P~lllLDEP 159 (321)
...+ . .+..+.+..+++.++... ...++..+|++++||+.++ +++ ..+|++ +|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 0111 1 111122344555554321 1345677898999988887 665 444554 89
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy106 160 TSGIDPVIAEEIWNHLLYLA 179 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~ 179 (321)
+|++|..+..++++.|.++.
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHh
Confidence 99999999999999987764
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.84 E-value=1.6e-10 Score=105.97 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=35.9
Q ss_pred ceEEEEeE-EEEe-CCCCCceeeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 7 CAIRVENA-YKRH-SSKLPYVLDKLCMTVQK---STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 7 ~~I~v~nl-~k~y-~~~~~~iL~~isl~i~~---Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++++|+ +++| ++ ..+|+|+||+|.+ |++++|+||+||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~--~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc--chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9999 55 6799999999999 9999999999999999999998754
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.84 E-value=5.4e-09 Score=104.12 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=77.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
..++++++.+++| +.|.||+|+|||||++++++.... .+-++.- ..+..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-------------~f~~is~-~~~~~--------------- 87 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-------------PFFHISG-SDFVE--------------- 87 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-------------CEEEEEG-GGTTT---------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-------------CeeeCCH-HHHHH---------------
Confidence 3567778888888 789999999999999999984310 0111110 00000
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHH
Q psy106 104 GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP----------TSGIDPVIAEEIWN 173 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP----------tsgLD~~~~~~i~~ 173 (321)
..++ ++++++|..+++|....|.+|++||| ++|.|+...+.+.+
T Consensus 88 ------------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 88 ------------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp ------------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred ------------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 0011 26778888999999999999999999 44777777777777
Q ss_pred HHHHHH----hCCceEEEecCChhHH
Q psy106 174 HLLYLA----ESGRTILITTHYIDEA 195 (321)
Q Consensus 174 ll~~l~----~~g~tIil~tH~l~~~ 195 (321)
++..+. ..+..||.+||.++.+
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHhccCCCCCEEEEEecCChhhh
Confidence 776663 3478899999998654
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.82 E-value=4.3e-09 Score=110.53 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=89.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCC-HHHHHHHHHHHhCCCHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT-IDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~lt-v~e~l~~~~~~~~~~~~~~~ 111 (321)
+..|+.+.++||+||||||++.++++...+..| .| .++.++. |... +.+.........+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g---~~ilvl~------P~r~La~q~~~~l~~~~~~~----- 167 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN---TQVACTQ------PRRVAAMSVAQRVAEEMDVK----- 167 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT---CEEEEEE------SCHHHHHHHHHHHHHHTTCC-----
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC---ceEEecC------chHHHHHHHHHHHHHHhCCc-----
Confidence 456899999999999999999988765444332 01 1233321 1100 000000000000000
Q ss_pred HHHHHHHHHcCC----cc---ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCc
Q psy106 112 EKAEYLQALLHL----NH---FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGR 183 (321)
Q Consensus 112 ~~~~~ll~~~~l----~~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~ 183 (321)
.....+. +. .+..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+........
T Consensus 168 -----v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~ 242 (773)
T 2xau_A 168 -----LGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLK 242 (773)
T ss_dssp -----BTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCE
T ss_pred -----hhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCce
Confidence 0000110 00 134566789999999999999999999999999997 9998877777766665544567
Q ss_pred eEEE-ecCChhHHhh-cC
Q psy106 184 TILI-TTHYIDEAKK-SH 199 (321)
Q Consensus 184 tIil-~tH~l~~~~~-~d 199 (321)
+|++ +||+.+.+.. ++
T Consensus 243 iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 243 IIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEESCSCCHHHHHHTT
T ss_pred EEEEeccccHHHHHHHhc
Confidence 7888 4999887754 54
No 172
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.81 E-value=4.5e-10 Score=98.21 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 116 (321)
++||+|||||||||+.++|+++ |...++.... +.+. .+. . ....+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~~~~~--------~~~-----------------~----~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVAREVV--------AKD-----------------S----PLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHHHHTT--------CSS-----------------C----HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHHHHHc--------cCC-----------------h----HHHHH
Confidence 6899999999999999999983 4333432111 0000 000 0 11223
Q ss_pred HHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH-
Q psy106 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA- 195 (321)
Q Consensus 117 ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~- 195 (321)
+.+.++.... .|.|+.+|..+++.+..+|+.+-.+ .+.++|..+..+.+.+... .+.++|+.+|.+.+.
T Consensus 50 i~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~ 119 (206)
T 1jjv_A 50 IVEHFGAQIL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENK 119 (206)
T ss_dssp HHHHHCTTCC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTT
T ss_pred HHHHhCHHHh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcC
Confidence 3344443211 3678899999999888888654333 4466787777777666433 356899999998776
Q ss_pred -hh-cCEEEEEe
Q psy106 196 -KK-SHMIGLMR 205 (321)
Q Consensus 196 -~~-~drv~il~ 205 (321)
.. ||++++++
T Consensus 120 ~~~~~d~vi~l~ 131 (206)
T 1jjv_A 120 LTALCDRILVVD 131 (206)
T ss_dssp CGGGCSEEEEEE
T ss_pred cHhhCCEEEEEE
Confidence 44 99988875
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.79 E-value=1e-09 Score=95.14 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
...|++++.+|++.++| ||++|+.+..++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999999888664
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.78 E-value=3.4e-10 Score=99.03 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=31.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
+..+-.++-++|++++|+|||||||||++++|++.+ |.+.+++.+
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 444555778899999999999999999999999876 788887754
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.75 E-value=6.5e-09 Score=99.26 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
..-.++++|+||+|||||++.++|... ..|.. .+.. ...++.++++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~--~~~t~~~~~~~~~~~~~---------------------------- 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASY--PFTTRGINVGQFEDGYF---------------------------- 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECC--TTCSSCEEEEEEEETTE----------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCC--CCeeeceeEEEEEecCc----------------------------
Confidence 345799999999999999999998652 11111 0100 012333332210
Q ss_pred HHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEec--
Q psy106 114 AEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD-EPTSGIDPVIAEEIWNHLLYLAESGRTILITT-- 189 (321)
Q Consensus 114 ~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD-EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~t-- 189 (321)
.+...+... .+.+..++|+|++|++. +.+...++-++++| +|.+++|...+..+++.+.+... ++.+|++.
T Consensus 215 ---~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK 289 (357)
T 2e87_A 215 ---RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINK 289 (357)
T ss_dssp ---EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECC
T ss_pred ---eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 001111111 23466789999999887 66666788899999 99999999998888887766543 77888888
Q ss_pred CChh
Q psy106 190 HYID 193 (321)
Q Consensus 190 H~l~ 193 (321)
||+.
T Consensus 290 ~Dl~ 293 (357)
T 2e87_A 290 IDVA 293 (357)
T ss_dssp TTTC
T ss_pred cccC
Confidence 8874
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.67 E-value=9.1e-10 Score=96.27 Aligned_cols=60 Identities=23% Similarity=0.220 Sum_probs=46.2
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE--EECCccc
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--HLSITSK 74 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I--~~~g~~~ 74 (321)
+|+++.++. ..+.+..++..++|++++|+|||||||||+.++|++.+. ..|.+ .+++.+.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 577887777 568899999999999999999999999999999999887 67887 7776543
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.66 E-value=5.6e-09 Score=90.26 Aligned_cols=30 Identities=33% Similarity=0.341 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNVLNGG 65 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G 65 (321)
|++++|+||||||||||+++|+|+++++.|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999975444
No 178
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.64 E-value=2.3e-09 Score=97.60 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=34.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCccEEE
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---GQNVLNGGNIH 68 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~---Gl~~p~~G~I~ 68 (321)
.++++.+ ++|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 3555554 789999999999999999999999 99999999997
No 179
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.63 E-value=1.5e-08 Score=87.88 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=29.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G 65 (321)
+++++|++++|+|||||||||++++|+++..|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999877665
No 180
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.61 E-value=3.3e-11 Score=114.47 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=74.8
Q ss_pred EEEeCCCCCceeeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCccEEEECCcccCeEEEEcCCCCC
Q psy106 15 YKRHSSKLPYVLDKLCMTVQKST------IYSLLGASGCGKTTLLSCITGQNV--LNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 15 ~k~y~~~~~~iL~~isl~i~~Ge------i~~llGpNGaGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
++.|++ ..+|++++..+.+++ ++||+||||||||||+++|++++. |++|. ++++.++...
T Consensus 67 ~~~~~~--~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~----------v~~i~~D~f~ 134 (321)
T 3tqc_A 67 SFYVTA--RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN----------VEVITTDGFL 134 (321)
T ss_dssp HHHHHH--HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC----------EEEEEGGGGB
T ss_pred HHhhcc--hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe----------EEEEeecccc
Confidence 344555 457888888888877 999999999999999999999987 44544 4556665543
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
++. ...+.... ...++.+.....+.....++.+.-....-..-.+|.+..+|+.-+...+..|+++|++.|..-.|+
T Consensus 135 ~~~-~~l~~~~~-~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 135 YSN-AKLEKQGL-MKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp CCH-HHHHHTTC-GGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cch-hhhhhHHH-HhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 332 11111000 001121111001111112221110000011123444555554333445679999999999886654
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.61 E-value=1.6e-10 Score=115.84 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=86.0
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQ 82 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q 82 (321)
+++.+.|.+ ..+++++++++++| +.|+||||+|||||+++|++... .+.+.+++.+. ++++.+||
T Consensus 44 ~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 44 KEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp HHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred HHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 344444544 45788999999999 89999999999999999999874 67888876542 24566777
Q ss_pred CCC-CCCCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 83 QIS-LYPEFTIDEMICYYGLIYG----MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 83 ~~~-l~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
... ..+.+.+.|++.......+ ....+..+.+..++ .+||||++|+..+++|..++|++ ||
T Consensus 118 ~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL------------~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH------------HHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH------------HHhcccccCccEEEEEecCChhh--cC
Confidence 653 3444444555532211111 01122222233332 25789999999999999999998 89
Q ss_pred CCCC
Q psy106 158 EPTS 161 (321)
Q Consensus 158 EPts 161 (321)
||..
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 9865
No 182
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.57 E-value=1e-08 Score=97.10 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=42.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
++++||++++|++++++|||||||||++..|++.+.+.+|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3789999999999999999999999999999999999999998754
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=2.1e-07 Score=87.82 Aligned_cols=125 Identities=17% Similarity=0.063 Sum_probs=73.9
Q ss_pred CCc--EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 35 KST--IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 35 ~Ge--i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
.+. .+.|.||+|+|||||++.+++...+..+ ..+.++.... ..+..+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~---------~~~~~i~~~~----~~~~~~~~~--------------- 92 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT---------ARFVYINGFI----YRNFTAIIG--------------- 92 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC---------CEEEEEETTT----CCSHHHHHH---------------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC---------eeEEEEeCcc----CCCHHHHHH---------------
Confidence 446 8999999999999999999988766431 1123333111 112222111
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCceEEE
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE---SGRTILI 187 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~---~g~tIil 187 (321)
.+...++.. .+....+..+..... ...+ ..+|.++++||+... |+.....+...+.++.. .+.++|+
T Consensus 93 ---~l~~~l~~~---~~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 93 ---EIARSLNIP---FPRRGLSRDEFLALL-VEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp ---HHHHHTTCC---CCSSCCCHHHHHHHH-HHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred ---HHHHHhCcc---CCCCCCCHHHHHHHH-HHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 111222221 111123333322211 1111 245889999999876 88888888888866654 5789999
Q ss_pred ecCChhHH
Q psy106 188 TTHYIDEA 195 (321)
Q Consensus 188 ~tH~l~~~ 195 (321)
+||+.+..
T Consensus 165 ~~~~~~~~ 172 (389)
T 1fnn_A 165 VGHNDAVL 172 (389)
T ss_dssp EESSTHHH
T ss_pred EECCchHH
Confidence 99988644
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.55 E-value=1.1e-07 Score=90.75 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=84.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHH-HHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY-GLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~ 102 (321)
..|+.+.--+.+|+++.|.|++|+|||||+..++.......+ .+.|+. .+++..+...-. ...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~----------~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR----------GVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC----------EEEEEE------SSSCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC----------eEEEEe------CCCCHHHHHHHHHHHh
Confidence 356666667999999999999999999999888754332222 344433 135554433211 111
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ES 181 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~ 181 (321)
.+.+. ... .-+.||.++.+|++.|...+.+++++|.|+|...+ .++...+++++ +.
T Consensus 98 ~~v~~----------------~~l--~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~ 154 (338)
T 4a1f_A 98 TSINM----------------HDL--ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQH 154 (338)
T ss_dssp HCCCH----------------HHH--HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHC
T ss_pred hCCCH----------------HHH--hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhc
Confidence 12211 111 11479999999999999999999999999997543 35666666665 44
Q ss_pred -CceEEEecC
Q psy106 182 -GRTILITTH 190 (321)
Q Consensus 182 -g~tIil~tH 190 (321)
|..+|++-|
T Consensus 155 gg~~lIVIDy 164 (338)
T 4a1f_A 155 KELGIAFIDY 164 (338)
T ss_dssp TTEEEEEEEE
T ss_pred CCCCEEEEec
Confidence 678888754
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.55 E-value=3.8e-07 Score=86.87 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=89.5
Q ss_pred EeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCccEEEECCcc---------cCeEEE
Q psy106 12 ENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--QNVLNGGNIHLSITS---------KKQLGF 79 (321)
Q Consensus 12 ~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p~~G~I~~~g~~---------~~~ig~ 79 (321)
+++.+.|+.. ...+|++++++++ .++++|++|||||||++.|+| ++++.+|.++..... ....+.
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~ 88 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAE 88 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEE
T ss_pred HHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceee
Confidence 3444555531 1358999999999 899999999999999999999 567777765422110 123444
Q ss_pred EcCCCC-CCCCCC-HHHHHHHHHH-HhC----CCHHHHHHHH----HHHHHHcCCccccC--CCCccChHHHHHHHHHHH
Q psy106 80 MPQQIS-LYPEFT-IDEMICYYGL-IYG----MSLQQIKEKA----EYLQALLHLNHFKR--KCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 80 v~Q~~~-l~~~lt-v~e~l~~~~~-~~~----~~~~~~~~~~----~~ll~~~~l~~~~~--~~~~LSgGqkQRv~iA~a 146 (321)
.++.+. .+.+.. +.+.+..... ..+ .+.....-.+ ..-+...++....+ ...+.+..++|+..++++
T Consensus 89 ~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~ 168 (360)
T 3t34_A 89 FLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRS 168 (360)
T ss_dssp ETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHH
T ss_pred eecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHH
Confidence 443332 111110 1111100000 000 0000000000 00000111111111 123467889999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEecC
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTH 190 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g-~tIil~tH 190 (321)
.+.+|+++|+.-..+..|... ...+++++++...| .||++.|.
T Consensus 169 ~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 169 YIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999888885444455443 45566777776555 57777766
No 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.52 E-value=1.1e-08 Score=97.75 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
+++.+++|+|++|||||||++.|+|...+++|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 35789999999999999999999998888888776643
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.50 E-value=3.2e-07 Score=90.30 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 114 (321)
++.+++++|||||||||++..|++.+.+.+++|.+-+.+ . +. ....+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D----------~--~r-~~a~eqL~~---------------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD----------V--YR-PAAYDQLLQ---------------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------C--SC-HHHHHHHHH----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC----------c--cc-hhHHHHHHH----------------
Confidence 589999999999999999999999988877777653222 1 11 012222221
Q ss_pred HHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCceEEEecCC
Q psy106 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT-SG--IDPVIAEEIWNHLLYLAESGRTILITTHY 191 (321)
Q Consensus 115 ~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt-sg--LD~~~~~~i~~ll~~l~~~g~tIil~tH~ 191 (321)
..+..+++.... ....+.-.--+-+++.+...+++++|+|+|. .+ .|+....++.++.+........+++.+|.
T Consensus 147 --~~~~~gv~~~~~-~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 147 --LGNQIGVQVYGE-PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --HHHTTTCCEECC-TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --HHHhcCCceeec-cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 122223321110 0111122222335666666788999999886 45 78877777777665554334455555553
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.44 E-value=5.7e-08 Score=83.51 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEE
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHL 69 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~ 69 (321)
+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998864 4555543
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.42 E-value=6.5e-08 Score=99.94 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=71.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc---------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK---------KQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
|+++++|..++|+|+||||||||++.|++...+ ..|+| .+|... +.+++.+|...++.. ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 467889999999999999999999999976544 56766 333211 123333332222111 00
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCC-ccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~-~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+...|.+.. .++ .......-..++-++++| |+.|+++..+ .+++ .
T Consensus 75 -----------------------~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-~~~~---~ 121 (665)
T 2dy1_A 75 -----------------------RVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE-RAWT---V 121 (665)
T ss_dssp -----------------------EEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-HHHH---H
T ss_pred -----------------------EEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-HHHH---H
Confidence 0001122111 111 122233345788899999 9999998866 3333 3
Q ss_pred HHhCCceEEEecCChhH
Q psy106 178 LAESGRTILITTHYIDE 194 (321)
Q Consensus 178 l~~~g~tIil~tH~l~~ 194 (321)
+.+.+.++|++.|.++.
T Consensus 122 ~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHTTCCEEEEEECGGG
T ss_pred HHHccCCEEEEecCCch
Confidence 33468889999998775
No 190
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=1.1e-07 Score=82.83 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=24.5
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+++|+||++++|++++|+||+||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999654
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=1.3e-07 Score=84.53 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=34.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
+.+.++|++++|.|||||||||++++|+|+ +|+|.+.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 445689999999999999999999999997 6888876654
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.33 E-value=1.1e-07 Score=83.23 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=36.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
..++|++++|+|||||||||++++|++++++.+|.+.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 357899999999999999999999999998888888765443
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.30 E-value=8.6e-07 Score=87.08 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=37.6
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 149 HDPELLILDEPTSGIDP-VIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~-~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999876654 678889999988887889999999973
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.28 E-value=3.7e-07 Score=80.25 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=27.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
++|++++|+||||||||||+++|++..+|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.28 E-value=3.4e-06 Score=80.08 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=77.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
-+++|+++.|.||+|||||||+..++.. .++..| | ...++.|+.-+..+ +......+ +...+...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g-~~~~vlyi~~E~~~----~~~~l~~~-~~~~g~~~~- 185 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y-PGGKIIFIDTENTF----RPDRLRDI-ADRFNVDHD- 185 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B-CCCEEEEEESSSCC----CHHHHHHH-HHHTTCCHH-
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C-CCCeEEEEECCCCC----CHHHHHHH-HHHcCCCHH-
Confidence 4789999999999999999999998864 332211 0 11345566544432 22222111 222333321
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChH-HHHHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHH
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGG-QQRRVSLAITLL----HDPELLILDEPTSGIDPV--------I----AEEIW 172 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgG-qkQRv~iA~aL~----~~P~lllLDEPtsgLD~~--------~----~~~i~ 172 (321)
.+++.+.+ . + ..+.. +.+.+..++.++ .+|+++++|++++-..+. . ..++.
T Consensus 186 ------~~l~~l~~--~-~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l 253 (343)
T 1v5w_A 186 ------AVLDNVLY--A-R---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQML 253 (343)
T ss_dssp ------HHHHTEEE--E-E---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHH
T ss_pred ------HHHhceeE--e-e---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHH
Confidence 12221111 1 1 12332 234555566666 679999999999866442 1 23445
Q ss_pred HHHHHHH-hCCceEEEecCChh
Q psy106 173 NHLLYLA-ESGRTILITTHYID 193 (321)
Q Consensus 173 ~ll~~l~-~~g~tIil~tH~l~ 193 (321)
..|+.++ +.|.+||+++|...
T Consensus 254 ~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 254 SRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHhCCEEEEEeecee
Confidence 5555555 45899999999654
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.26 E-value=5.2e-07 Score=88.57 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=85.7
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCH
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv 92 (321)
++++.|+. .. ++++|+ +|++++++|||||||||++..|++.+.+.+++|.+.+.+..+.+.
T Consensus 81 ~L~~~~~~--~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa------------- 141 (425)
T 2ffh_A 81 ALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA------------- 141 (425)
T ss_dssp HHHHHTTS--SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH-------------
T ss_pred HHHHHhCC--Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh-------------
Confidence 45566765 22 678888 899999999999999999999999999988888875444321111
Q ss_pred HHHHHHHHHHhCC---------CHHHH-HHHHHHHHHHcCCc--cccCCCC-c-cChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 93 DEMICYYGLIYGM---------SLQQI-KEKAEYLQALLHLN--HFKRKCG-S-LSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 93 ~e~l~~~~~~~~~---------~~~~~-~~~~~~ll~~~~l~--~~~~~~~-~-LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
.+.+.......+. ...+. .+.++.+. .-+.+ ..|.++. . -+.-+.+...+++++..++-++++|
T Consensus 142 ~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~-~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD- 219 (425)
T 2ffh_A 142 REQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR-LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD- 219 (425)
T ss_dssp HHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH-HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-
T ss_pred HHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-
Confidence 1111111111110 11111 11222221 11222 1354432 1 2345777778888887777788888
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCceEEEecC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLA-ESGRTILITTH 190 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH 190 (321)
+++|.|... .++.+. .-+.+-++.|+
T Consensus 220 a~tgq~av~------~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 220 AMTGQEALS------VARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp GGGTTHHHH------HHHHHHHHTCCCEEEEES
T ss_pred ccchHHHHH------HHHHHHhcCCceEEEEeC
Confidence 566655442 223333 23566666666
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=5.4e-06 Score=75.98 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCceEEEecCChhHH----
Q psy106 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDP----------VIAEEIWNHLLYLAE----SGRTILITTHYIDEA---- 195 (321)
Q Consensus 134 SgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~----------~~~~~i~~ll~~l~~----~g~tIil~tH~l~~~---- 195 (321)
+++++.|..++.|...+|.+|++||+.+-++. ..+..++..+..... .+..||.+|++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35677777888888889999999999776553 223344444444321 245678888876432
Q ss_pred -hhcCEEEEE
Q psy106 196 -KKSHMIGLM 204 (321)
Q Consensus 196 -~~~drv~il 204 (321)
.++++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 347765544
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.23 E-value=9.4e-09 Score=97.77 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=51.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~ 70 (321)
+++.+++.+.|+. ..+++++++++.+|.+++|+|+||||||||++.|++.+.+.+|++.+-
T Consensus 30 ~ie~~~~~~~~~~--~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 30 LVESRHPRHQALS--TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp HHHCCCHHHHHHH--HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhhcCCchhhhHH--HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3555666666665 558899999999999999999999999999999999988888777653
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.23 E-value=4.8e-06 Score=78.27 Aligned_cols=138 Identities=16% Similarity=0.236 Sum_probs=77.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQ-NVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl-~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
-+++|+++.|.||+|||||||+..++.. ..|. .| |. ..++.|+.-+..+ +......+ +...+...++
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-~~~vlyi~~e~~~----~~~~l~~~-~~~~g~~~~~ 171 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-SGKAVYIDTEGTF----RWERIENM-AKALGLDIDN 171 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-SCEEEEEESSSCC----CHHHHHHH-HHHTTCCHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-CCeEEEEECCCCC----CHHHHHHH-HHHhCCCHHH
Confidence 5899999999999999999999988753 2331 11 10 1245565544332 12221111 2223333221
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChH-HHHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHH
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGG-QQRRVSLAITLL---HDPELLILDEPTSGIDP--------VI----AEEIWN 173 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgG-qkQRv~iA~aL~---~~P~lllLDEPtsgLD~--------~~----~~~i~~ 173 (321)
+++.+ . ..+ ..+.. +.+.+..+++++ .+|+++++|+.++-.+. .. ..+++.
T Consensus 172 -------~~~~l--~-~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~ 238 (324)
T 2z43_A 172 -------VMNNI--Y-YIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLH 238 (324)
T ss_dssp -------HHHTE--E-EEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHH
T ss_pred -------HhccE--E-EEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHH
Confidence 11211 1 111 12332 335677777787 67999999999876532 11 234444
Q ss_pred HHHHHH-hCCceEEEecCChh
Q psy106 174 HLLYLA-ESGRTILITTHYID 193 (321)
Q Consensus 174 ll~~l~-~~g~tIil~tH~l~ 193 (321)
.|+.++ +.+.+||+++|-..
T Consensus 239 ~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 239 QLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHhCCEEEEEcceee
Confidence 555554 45899999988543
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.22 E-value=2.6e-06 Score=79.93 Aligned_cols=130 Identities=13% Similarity=0.149 Sum_probs=82.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH-H
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL-I 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~ 102 (321)
..|+++.--+++|+++.|.|++|+|||||+..++.-... .| ..+.|+.- +++..+...-... .
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g---------~~vl~~sl------E~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND---------DVVNLHSL------EMGKKENIKRLIVTA 119 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT---------CEEEEEES------SSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC---------CeEEEEEC------CCCHHHHHHHHHHHH
Confidence 357777756999999999999999999999888742211 11 23555442 2455443321111 1
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-S 181 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~ 181 (321)
.+.+ +......-..||.++++|+..|...+.++++++.|+|... ..++.+.++++++ .
T Consensus 120 ~~i~----------------~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 120 GSIN----------------AQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKN 178 (315)
T ss_dssp TTCC----------------HHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTS
T ss_pred cCCC----------------HHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhc
Confidence 1111 1111110023999999999999999999999999999644 3445666666654 4
Q ss_pred Cce--EEEecC
Q psy106 182 GRT--ILITTH 190 (321)
Q Consensus 182 g~t--Iil~tH 190 (321)
|.. +|++-|
T Consensus 179 ~~~~~lVVID~ 189 (315)
T 3bh0_A 179 PGKRVIVMIDY 189 (315)
T ss_dssp SSCCEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 666 777765
No 201
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.20 E-value=5.5e-07 Score=84.44 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999876553
No 202
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.19 E-value=2.7e-08 Score=93.01 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEECCc-ccCeEEEEcCCCCC--CCCCCHHHHHHHHHHHhCCCHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLSIT-SKKQLGFMPQQISL--YPEFTIDEMICYYGLIYGMSLQQI 110 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~g~-~~~~ig~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~ 110 (321)
++.+++|+|++|||||||++.|+|... +.++.. +. ..+..|+++++..- +.+....+. .....+ ....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~---~tTr~~~~gi~~~~~~~i~~iDTpG~~~-~~~~~l----~~~~ 78 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA---QTTRHRIVGIHTEGAYQAIYVDTPGLHM-EEKRAI----NRLM 78 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS---SCCSSCEEEEEEETTEEEEEESSSSCCH-HHHHHH----HHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC---CcceeeEEEEEEECCeeEEEEECcCCCc-cchhhH----HHHH
Confidence 345899999999999999999999632 111110 11 11345666654320 111111000 000000 0000
Q ss_pred HHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc-
Q psy106 111 KEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDPVI-AEEIWNHLLYLAES-GR- 183 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~~~-~~~i~~ll~~l~~~-g~- 183 (321)
...+...++..++-. .+. ..+|.|++ .+++++. ..|.++++ +.+|... +..+.+.+.++++. |.
T Consensus 79 ~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~ 149 (301)
T 1ega_A 79 NKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFL 149 (301)
T ss_dssp TCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcC
Confidence 000000011111111 122 23898886 5566666 78999998 8999876 67788888888753 53
Q ss_pred -eEEEecCChhHHh
Q psy106 184 -TILITTHYIDEAK 196 (321)
Q Consensus 184 -tIil~tH~l~~~~ 196 (321)
.+.+|+|+-+.++
T Consensus 150 ~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 150 DIVPISAETGLNVD 163 (301)
T ss_dssp EEEECCTTTTTTHH
T ss_pred ceEEEECCCCCCHH
Confidence 5667777655443
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.19 E-value=5.2e-07 Score=79.75 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
|+...+|++++|+||||||||||++.|++..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999998765
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.18 E-value=8.2e-07 Score=77.40 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=36.4
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
++-=++++|++++|+||+||||||+.+.|++.++ .+.+++|+..+++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--------------NCSVISQDDFFKP 59 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--------------TEEEEEGGGGBCC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--------------CcEEEeCCccccC
Confidence 3344678899999999999999999999999764 2566777665443
No 205
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.16 E-value=6.7e-07 Score=75.68 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=29.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~ 72 (321)
.+|++++|+|||||||||+.++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence 468999999999999999999999864 66776654
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.15 E-value=3.8e-07 Score=92.37 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=37.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEE-ECCcc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-NIH-LSITS 73 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~-~~g~~ 73 (321)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 5789999999999999999999999999999886 675 67654
No 207
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.03 E-value=8e-05 Score=72.95 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=82.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH-HHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY-YGLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~ 102 (321)
..|+.+.--+++|+++.|.|++|+|||||+..++.-.....| ..+.|+.- .++..+...- ....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------~~vl~~sl------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------VGVGIYSL------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------CCEEEEES------SSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CeEEEEEC------CCCHHHHHHHHHHHH
Confidence 356666655899999999999999999999888754432222 12444332 2344332221 1111
Q ss_pred hC----------CCHHHHHHHHHHHHHHc-CCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----
Q psy106 103 YG----------MSLQQIKEKAEYLQALL-HLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDP---- 165 (321)
Q Consensus 103 ~~----------~~~~~~~~~~~~ll~~~-~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~---- 165 (321)
.+ +...+. .++......+ .....-.....+|..+- .+.++.+. ++|+++++|..+.-.++
T Consensus 253 ~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~ 329 (444)
T 2q6t_A 253 ARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGK 329 (444)
T ss_dssp TTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC----
T ss_pred cCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCC
Confidence 11 222222 2222222222 11111111235666554 44556665 58999999999764432
Q ss_pred ------HHHHHHHHHHHHHH-hCCceEEEecC
Q psy106 166 ------VIAEEIWNHLLYLA-ESGRTILITTH 190 (321)
Q Consensus 166 ------~~~~~i~~ll~~l~-~~g~tIil~tH 190 (321)
....++...|+.++ +.+.+||+++|
T Consensus 330 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 330 SGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 12245666667776 45999999998
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.02 E-value=1.8e-06 Score=72.66 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.|++++|+|||||||||+.++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999997653
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.99 E-value=5.8e-05 Score=67.06 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
-++|+|++|+|||||++.|+|...+.++..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 479999999999999999999877666543
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.97 E-value=1.5e-05 Score=73.91 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.+.++..+.|.||+|+|||||++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.97 E-value=4.5e-06 Score=87.99 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=29.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
+|.+++|+.+.|+||||||||||+++|++...+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346889999999999999999999999998743
No 212
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.96 E-value=3.6e-06 Score=70.57 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=24.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666655 99999999999999999986
No 213
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.96 E-value=8.8e-07 Score=89.36 Aligned_cols=56 Identities=27% Similarity=0.250 Sum_probs=45.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
++.+.|+. ..++.++++++ +|++++|+||||+|||||+++|++...+..|.+...+
T Consensus 88 ~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 88 KVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 34444444 34678888888 8999999999999999999999999988888876554
No 214
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.95 E-value=6.9e-05 Score=71.76 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=79.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||...++.......+ ++.|+.-+..+.+ . . +...+...+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~----------~vlyid~E~s~~~------~--~-a~~~g~~~~---- 116 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP------I--Y-ARKLGVDID---- 116 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----------CEEEEESSCCCCH------H--H-HHHTTCCGG----
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEeCCCCccH------H--H-HHHcCCChh----
Confidence 889999999999999999999888753322211 2445544333211 0 0 111122110
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHH------------HH-HHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDPV------------IA-EEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~~------------~~-~~i~~ll~~ 177 (321)
.+. ..+ +. + + .|-..+++.++ .+|+++++|++++-.... .+ +.+.+.+++
T Consensus 117 ---------~l~-i~~-~~--~-~-e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~ 181 (356)
T 1u94_A 117 ---------NLL-CSQ-PD--T-G-EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 181 (356)
T ss_dssp ---------GCE-EEC-CS--S-H-HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHH
T ss_pred ---------hee-eeC-CC--C-H-HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHH
Confidence 000 011 11 2 2 34456666664 689999999999866321 11 234444444
Q ss_pred H----HhCCceEEEecCChhH----------------Hhh-cCEEEEEeCCEEEE
Q psy106 178 L----AESGRTILITTHYIDE----------------AKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~~----------------~~~-~drv~il~~G~i~~ 211 (321)
+ ++.+.+||+++|-... ++. ||-++.++..+.+.
T Consensus 182 L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k 236 (356)
T 1u94_A 182 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 236 (356)
T ss_dssp HHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEE
T ss_pred HHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeec
Confidence 4 3569999999985321 344 88777777655443
No 215
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=3.1e-05 Score=71.98 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=32.4
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 149 HDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 149 ~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
.+|++|++||+-. .-++..+..+...+..+.+.|..+|++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5699999999855 34557888899999887777776666665
No 216
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.86 E-value=1.8e-06 Score=75.84 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---CCCccEEEE
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN---VLNGGNIHL 69 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~---~p~~G~I~~ 69 (321)
+.+++|+||+||||||+.++|++.+ .+++|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998755 678888765
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.86 E-value=4.9e-06 Score=74.58 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=31.1
Q ss_pred eeeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE
Q psy106 25 VLDKLCMTVQ---KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68 (321)
Q Consensus 25 iL~~isl~i~---~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~ 68 (321)
-|.++|+++. +|.+++|.||+||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 4778888887 9999999999999999999999998877 55553
No 218
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.86 E-value=3.8e-06 Score=71.41 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=30.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--EEEECCc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSIT 72 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G--~I~~~g~ 72 (321)
.+|++++|+|++||||||+.++|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998766 45 5555543
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.85 E-value=1.3e-05 Score=69.21 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
..+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999976543
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.76 E-value=1.4e-05 Score=69.83 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=30.1
Q ss_pred cCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCce-EEEecCC
Q psy106 149 HDPELLILDEPTSG-IDPVIAEEIWNHLLYLAESGRT-ILITTHY 191 (321)
Q Consensus 149 ~~P~lllLDEPtsg-LD~~~~~~i~~ll~~l~~~g~t-Iil~tH~ 191 (321)
.+|.++++||.-.- -+...+..+.+.+....+.+.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 57899999996542 2233477788888887665654 7777763
No 221
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.73 E-value=1.5e-05 Score=72.65 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIG 202 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~ 202 (321)
|||+.+..+..++++.+.+..+ ...+..+.+|..++++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 9999999999999999988764 45666778898888876 66643
No 222
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=3.3e-07 Score=85.60 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~ 194 (321)
++.++++|| ...+++..+..+.+.+.+... ...+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 677999999 788999999888888876543 3456777776654
No 223
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.73 E-value=3.6e-06 Score=81.81 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=45.9
Q ss_pred EEEEeEEEEeCCCCCceee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 9 IRVENAYKRHSSKLPYVLD--------------KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~--------------~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|++..|+.. +..|+ |+++.+.+|+..+|+||+|+|||||++.|++.+
T Consensus 134 i~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 6788999999864 45888 899999999999999999999999999998765
No 224
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.71 E-value=2.6e-05 Score=76.27 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------CCccEEEECCc
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV------------LNGGNIHLSIT 72 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~------------p~~G~I~~~g~ 72 (321)
-++|+|+||||||||++.|+|... |.+|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 689999999999999999999854 66788888875
No 225
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.70 E-value=4.3e-05 Score=73.06 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=34.0
Q ss_pred EEEEeEEE-EeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 9 IRVENAYK-RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 9 I~v~nl~k-~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
..+..|+. .|+. +++..+++.+| +++|+|||||||||++.+|.
T Consensus 3 M~l~~L~l~nFr~-----~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFKS-----HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEETT-----EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEcccc-----ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45677764 3543 47788888775 99999999999999999985
No 226
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.70 E-value=4.2e-05 Score=68.10 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=70.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+.+|+.+.+.||+||||||++..++.......|. ...++.+++.|......++.+++... .+..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------~~~~~~l~~~p~~~la~q~~~~~~~~---~~~~------ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------AAECNIVVTQPRRISAVSVAERVAFE---RGEE------ 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-------GGGCEEEEEESSHHHHHHHHHHHHHT---TTCC------
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-------CCceEEEEeccchHHHHHHHHHHHHH---hccc------
Confidence 4579999999999999999988765321111111 12345566655432222333333211 1100
Q ss_pred HHHHHHHHcCCcc-cc-------CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCc
Q psy106 113 KAEYLQALLHLNH-FK-------RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGR 183 (321)
Q Consensus 113 ~~~~ll~~~~l~~-~~-------~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~ 183 (321)
+-...+... .+ ..+--.+.|+-.+.. ...+.+.+++++||.-. ++|.......++.+.....+-.
T Consensus 137 ----~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~ 210 (235)
T 3llm_A 137 ----PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVR 210 (235)
T ss_dssp ----TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSE
T ss_pred ----cCceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCe
Confidence 000000000 00 111124556666553 34688999999999976 6777666444444433322223
Q ss_pred eEEEe-cCChhH
Q psy106 184 TILIT-THYIDE 194 (321)
Q Consensus 184 tIil~-tH~l~~ 194 (321)
++++| |.+.+.
T Consensus 211 ~il~SAT~~~~~ 222 (235)
T 3llm_A 211 IVLMSATIDTSM 222 (235)
T ss_dssp EEEEECSSCCHH
T ss_pred EEEEecCCCHHH
Confidence 44443 444443
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.69 E-value=5.7e-05 Score=69.23 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
..+.|.||+|+||||+.++|++...+.++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5899999999999999999999887766644
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.66 E-value=2.1e-05 Score=69.14 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=24.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
.+.++++.+ .+++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345666666 499999999999999999985
No 229
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.66 E-value=0.00012 Score=66.35 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH----hCCceEEEecCChhHH
Q psy106 144 AITLLHDPELLILDEPTSG----------IDPVIAEEIWNHLLYLA----ESGRTILITTHYIDEA 195 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsg----------LD~~~~~~i~~ll~~l~----~~g~tIil~tH~l~~~ 195 (321)
..+....|.+|++||.-.- -++..+..+..++..+. ..+..+|.+|+..+.+
T Consensus 104 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 104 KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3344457889999997332 36667778888887763 2356788899877654
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.65 E-value=9.4e-06 Score=71.09 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=35.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--EEEECC
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSI 71 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G--~I~~~g 71 (321)
+.+++|.+++|.|++||||||+.+.|++.+.|+.| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 45678999999999999999999999998887778 666654
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.63 E-value=6.1e-06 Score=77.09 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=44.0
Q ss_pred EeEEEEeCCCCCceeee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc
Q psy106 12 ENAYKRHSSKLPYVLDK-LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~-isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~ 72 (321)
+++++.|++. . ++ ++|+.+ |++++++||||+||||++..|++.+.+.++++.+.+.
T Consensus 78 ~~l~~~~~~~--~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 78 DELSNLFGGD--K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp HHHHHHTTCS--C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHhccc--c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3455566652 1 56 888876 9999999999999999999999999887777766433
No 232
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.60 E-value=4.1e-06 Score=80.24 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=37.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
.+.++|+++.|++ +.++++++|+| +|+|+||+|||||++.|.|...+..+.+
T Consensus 17 ~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 17 YVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp ----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred eEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 4788888888877 56889999987 9999999999999999988765555443
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.57 E-value=5e-05 Score=64.94 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=20.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+++++|++.++. -++++|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998888 468999999999999999987
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.56 E-value=2.1e-05 Score=67.14 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=31.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~ 68 (321)
...+|.+++|.|++||||||+.+.|+..+.+.++.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999998877666653
No 235
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.56 E-value=1.4e-05 Score=69.07 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=31.1
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+.|++- ..+++++|++.++++ ++++|++|||||||++.+.+
T Consensus 7 ~~~~~~-~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGF-SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 446553 358899999988886 67999999999999999986
No 236
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.55 E-value=0.00023 Score=66.29 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=72.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCccEEE------ECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG--QNVLNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p~~G~I~------~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
-+++|+++.|.||+|+|||||...++. .+++ |... ..|....++.|+.-+..+. ....... +...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~--~~~~~~~~~~~gg~~~~~v~yi~~e~~~~----~~~l~~~-~~~~ 166 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE--FLFYDEEAVSKGEVAQPKAVYIDTEGTFR----PERIMQM-AEHA 166 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG--GEECCTTTSCTTTTSSEEEEEEESSSCCC----HHHHHHH-HHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccc--cccccccccccCCCCCceEEEEECCCCCC----HHHHHHH-HHHc
Confidence 478999999999999999999988874 2321 1100 0000013466665444322 2222111 2222
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCccChH-HHHHHHHHHHHh---cCCCEEEEeCCCCCCC--------HHH----
Q psy106 104 GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG-QQRRVSLAITLL---HDPELLILDEPTSGID--------PVI---- 167 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG-qkQRv~iA~aL~---~~P~lllLDEPtsgLD--------~~~---- 167 (321)
+...++ +++.+.+ .+ ..+.- +.+-+..++.++ .+|+++++|.-++-.. ...
T Consensus 167 g~~~~~-------~~~~l~~---~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~ 233 (322)
T 2i1q_A 167 GIDGQT-------VLDNTFV---AR---AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQK 233 (322)
T ss_dssp TCCHHH-------HHHTEEE---EE---CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHH
T ss_pred CCCHHH-------HhcCEEE---Ee---CCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHH
Confidence 333221 1121111 11 11222 223344455555 4699999999875331 111
Q ss_pred HHHHHHHHHHHH-hCCceEEEecCC
Q psy106 168 AEEIWNHLLYLA-ESGRTILITTHY 191 (321)
Q Consensus 168 ~~~i~~ll~~l~-~~g~tIil~tH~ 191 (321)
..++...|+.++ +.+.+||++.|-
T Consensus 234 ~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 234 LGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHHHHHHHhCCEEEEECce
Confidence 234444555554 568999998873
No 237
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=4.4e-06 Score=78.54 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=42.8
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCccE
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTI--YSLLGASGCGKTTLLSCITGQNVLNGGN 66 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei--~~llGpNGaGKSTLl~~l~Gl~~p~~G~ 66 (321)
+++..||. ..+++.++..+++|++ +.|.||+|+||||+++++++.+.+..+.
T Consensus 23 ~~~~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 23 TLDEVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred cHHHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 34444555 5588999999999999 9999999999999999999987665543
No 238
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.51 E-value=4e-05 Score=65.62 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=26.5
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.48 E-value=4.5e-05 Score=65.86 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.45 E-value=5.7e-05 Score=65.68 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
...+|.+++|+||+||||||+.+.|+...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999999987653
No 241
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.41 E-value=0.00013 Score=68.24 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.00011 Score=61.79 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++++|++|||||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
No 243
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.36 E-value=0.00012 Score=61.63 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 244
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.35 E-value=8.5e-05 Score=72.18 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCccEEEECCc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQ-----------NVLNGGNIHLSIT 72 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl-----------~~p~~G~I~~~g~ 72 (321)
.+..|..++|+|+||+|||||++.|+|. +.|+.|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788888887653
No 245
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.32 E-value=0.00015 Score=60.26 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.29 E-value=0.002 Score=61.71 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=77.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
-+++|+++.|.||.|+|||||...++--..... ..+.|+.-+..+.+ . .+...+...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g----------~~vlyi~~E~s~~~------~---~a~~~g~d~~--- 127 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG----------GTCAFIDAEHALDP------V---YARALGVNTD--- 127 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT----------CCEEEEESSCCCCH------H---HHHHTTCCGG---
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC----------CeEEEEECCCChhH------H---HHHHcCCCHH---
Confidence 378999999999999999999977763221111 23555554432211 0 0111111100
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-----H--------HHHHHHHHHHH
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID-----P--------VIAEEIWNHLL 176 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD-----~--------~~~~~i~~ll~ 176 (321)
.+. ..+ +. + + .+-+.+++.++ .+|+++++|..++=.- - ...+.+.+.++
T Consensus 128 ----------~l~-i~~-~~--~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr 191 (366)
T 1xp8_A 128 ----------ELL-VSQ-PD--N-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 191 (366)
T ss_dssp ----------GCE-EEC-CS--S-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred ----------Hce-eec-CC--c-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHH
Confidence 000 111 11 2 2 34456667776 5699999999986541 0 11234555565
Q ss_pred HH---H-hCCceEEEecCChhH----------------Hhh-cCEEEEEeCCE
Q psy106 177 YL---A-ESGRTILITTHYIDE----------------AKK-SHMIGLMRKGI 208 (321)
Q Consensus 177 ~l---~-~~g~tIil~tH~l~~----------------~~~-~drv~il~~G~ 208 (321)
+| + +.+.+||+++|-... ++. ||.++.++.+.
T Consensus 192 ~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 192 KLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 55 3 468999999885321 234 88888877544
No 247
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.27 E-value=0.00025 Score=61.01 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=32.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 4678999999765 7888777777766432 2467789999887654
No 248
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.26 E-value=0.00013 Score=61.79 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
-++|+|++|||||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 37899999999999999999975443
No 249
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.25 E-value=0.00014 Score=61.61 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999984
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.22 E-value=0.00012 Score=63.01 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
.+++|+||+|||||||++.|++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999876543
No 251
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.21 E-value=7.5e-05 Score=67.33 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 143 LAITLLHDPELLILDEPTSG-IDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsg-LD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
+..++..+|+++|+|||-.- .+.......++.+..+.+.|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33334568999999998642 4433334455666555577889999998
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.20 E-value=0.00014 Score=62.81 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 253
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.18 E-value=0.0014 Score=61.99 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
--+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3588899999999999999999999875
No 254
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.17 E-value=3.8e-05 Score=73.68 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.3
Q ss_pred ceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q psy106 24 YVLDKLCMTVQKSTI--YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 24 ~iL~~isl~i~~Gei--~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+++.+++.+++|++ ++|+||+||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888899999999 9999999999999999998754
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.13 E-value=0.00021 Score=63.48 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.12 E-value=4.9e-05 Score=80.13 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=28.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.+.+++.+.|.||+|+|||||.+++++..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 6677899999999999999999999999875
No 257
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0019 Score=61.17 Aligned_cols=124 Identities=11% Similarity=0.098 Sum_probs=67.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHH-HcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCI-TGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l-~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
+++| ++-|.||.|+|||||+-.+ +...+...| .++.|+.-+..+.+ + .+..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g---------~~vlyId~E~s~~~-----~----ra~~--------- 77 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD---------AVCLFYDSEFGITP-----A----YLRS--------- 77 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT---------CEEEEEESSCCCCH-----H----HHHH---------
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC---------ceEEEEeccchhhH-----H----HHHH---------
Confidence 6789 8999999999999995444 433321101 23455554444322 0 0111
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-------H--------HHHHHHH
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--L--HDPELLILDEPTSGID-------P--------VIAEEIW 172 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~--~~P~lllLDEPtsgLD-------~--------~~~~~i~ 172 (321)
++++..+-.+..=.-++++.+.++.++ + .+|+++++|--++=.- + ..++.+-
T Consensus 78 ---------lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s 148 (333)
T 3io5_A 78 ---------MGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMK 148 (333)
T ss_dssp ---------TTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHH
T ss_pred ---------hCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHH
Confidence 222110000111123566667777776 4 3699999998766531 0 1223333
Q ss_pred HHHHH----HHhCCceEEEecCChh
Q psy106 173 NHLLY----LAESGRTILITTHYID 193 (321)
Q Consensus 173 ~ll~~----l~~~g~tIil~tH~l~ 193 (321)
+.+++ +++.|.++|++-|-..
T Consensus 149 ~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 149 SLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhCCEEEEECCeee
Confidence 44444 3467999999999754
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00016 Score=64.77 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=25.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.++++++.+++| +.|.||+|+||||+++++++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666666 88999999999999999998653
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.03 E-value=0.00033 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.||+||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998543
No 260
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.02 E-value=0.0028 Score=59.95 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+..-+.|.||.|+|||||.+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999998754
No 261
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.02 E-value=0.0013 Score=74.14 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=79.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||+..++.......+. +.|+.-+.... + +. +...+.+.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~----------VlyiS~Ees~~------q-l~--A~~lGvd~~---- 785 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT----------CAFIDAEHALD------P-IY--ARKLGVDID---- 785 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC----------EEEECTTSCCC------H-HH--HHHTTCCGG----
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC----------eEEEeccchHH------H-HH--HHHcCCChh----
Confidence 8999999999999999999999998654433332 34443222211 1 10 222222211
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID-P------------VIAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD-~------------~~~~~i~~ll~~ 177 (321)
.+. ... .. +. .+-...++.++ .+|+++++|+..+-.. + ...+++.+.+++
T Consensus 786 ---------~L~-i~~-~~--~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~ 850 (1706)
T 3cmw_A 786 ---------NLL-CSQ-PD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 850 (1706)
T ss_dssp ---------GCE-EEC-CS--SH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred ---------heE-Eec-CC--cH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHH
Confidence 010 111 11 22 24445555544 5899999999987652 1 112345555555
Q ss_pred H----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCE
Q psy106 178 L----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGI 208 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~ 208 (321)
| ++.|.+||+++|-.. .+++ ||.++.++++.
T Consensus 851 Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 851 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp HHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEecc
Confidence 4 356999999999221 2445 88888886544
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.01 E-value=0.0035 Score=61.68 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
++.+++++||+||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999976654
No 263
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.01 E-value=0.0013 Score=59.14 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=33.1
Q ss_pred HHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h--CCceEEEecCChh
Q psy106 140 RVSLAITL---LHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-E--SGRTILITTHYID 193 (321)
Q Consensus 140 Rv~iA~aL---~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~--~g~tIil~tH~l~ 193 (321)
+-.+.+++ ..+|+++|+--+.+.++.. ...+++.+.+.. . .+.++|+++|-.+
T Consensus 92 ~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~D 150 (247)
T 3lxw_A 92 CEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKED 150 (247)
T ss_dssp SHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGG
T ss_pred HHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHh
Confidence 33444444 3788888877666666543 455666666653 2 2678999998544
No 264
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.99 E-value=0.00029 Score=67.46 Aligned_cols=46 Identities=11% Similarity=0.210 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGID---PVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD---~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.|.++++||-=.-++ |.....+.+.+++.++.|..++++||+++.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence 589999999977774 7778888889988888899999999998765
No 265
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.95 E-value=0.00029 Score=63.49 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=32.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
..+++.++.|+||+||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 567889999999999999999999998654 2456666543
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00049 Score=57.73 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998755
No 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.95 E-value=0.00027 Score=63.77 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..-+++|.||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
No 268
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.93 E-value=0.00048 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+|.++.|.||+||||||+.+.|+-.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999753
No 269
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.90 E-value=0.0033 Score=55.70 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
....-+.|.||.|+||||+.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344557899999999999999998743
No 270
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.89 E-value=0.0023 Score=52.47 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.+.-+.|.||.|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4556889999999999999999876543
No 271
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.89 E-value=0.0013 Score=58.85 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh----------h-HHhhcCEEEEEe
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI----------D-EAKKSHMIGLMR 205 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l----------~-~~~~~drv~il~ 205 (321)
+|+++++||--. |++. ..+.+..+++.|.+||++-|+. . .+..||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 4455566666699999999932 2 234599998765
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00051 Score=56.58 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCI 56 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l 56 (321)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 273
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.88 E-value=0.00015 Score=67.78 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999986543
No 274
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.86 E-value=0.00016 Score=62.55 Aligned_cols=30 Identities=27% Similarity=0.518 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999987665433333
No 275
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.00059 Score=57.77 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
No 276
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.81 E-value=0.013 Score=53.29 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.-+.|.||.|+||||+.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999887654
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.78 E-value=0.00076 Score=58.77 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 278
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.78 E-value=0.015 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345668899999999999999999765
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.76 E-value=0.00075 Score=57.49 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998744
No 280
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.74 E-value=0.013 Score=57.98 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=73.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH-HHHHhC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY-YGLIYG 104 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~~ 104 (321)
|+.+.--+++|+++.|.|++|+|||||+..++--.....| ..+.|+.- +++..+...- .....+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g---------~~vl~~s~------E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG---------KKVGLAML------EESVEETAEDLIGLHNR 296 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC---------CCEEEEES------SSCHHHHHHHHHHHHTT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC---------CcEEEEec------cCCHHHHHHHHHHHHcC
Confidence 4444334899999999999999999998776532211112 12444431 3444443321 111122
Q ss_pred CCH-------------HHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-----
Q psy106 105 MSL-------------QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID----- 164 (321)
Q Consensus 105 ~~~-------------~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD----- 164 (321)
.+. .+..+..+.++....+. ....+.+++-. +-++.++.++ .+|+++++|=-+ .+.
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~-i~~~~~~~~~~--~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~ 372 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFH-LYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGE 372 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEE-EECCC---CHH--HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSC
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEE-EECCCCCCCHH--HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCC
Confidence 211 01111111111101110 12222334433 3444555554 479999999443 321
Q ss_pred --H-HHHHHHHHHHHHHH-hCCceEEEecCCh
Q psy106 165 --P-VIAEEIWNHLLYLA-ESGRTILITTHYI 192 (321)
Q Consensus 165 --~-~~~~~i~~ll~~l~-~~g~tIil~tH~l 192 (321)
. ....++...|+.++ +.|.+||+++|--
T Consensus 373 ~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 373 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 1 22345666666766 4599999998843
No 281
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.72 E-value=0.00071 Score=61.16 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+++|+||||||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999864
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.72 E-value=0.00094 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.70 E-value=0.0023 Score=62.81 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=75.5
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH-HHHHh
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY-YGLIY 103 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~ 103 (321)
.|+.+.--+++|+++.|.|+.|+|||||...++.-..-. | .++.|+.- +++..+...- .....
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g---------~~vl~fSl------Ems~~ql~~R~~~~~~ 249 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D---------DVVNLHSL------EMGKKENIKRLIVTAG 249 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T---------CEEEEECS------SSCTTHHHHHHHHHHS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C---------CEEEEEEC------CCCHHHHHHHHHHHHc
Confidence 344444348999999999999999999987776422111 1 23555432 2343332211 11111
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q psy106 104 GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESG 182 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g 182 (321)
+.+... ....-..|+..+.+|+.-|...+.+.+++|.|+|. +++. ++...+++++ +.|
T Consensus 250 ~i~~~~----------------l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~ 308 (444)
T 3bgw_A 250 SINAQK----------------IKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNP 308 (444)
T ss_dssp CCCHHH----------------HHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSC
T ss_pred CCCHHH----------------HhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhC
Confidence 222110 10000137888889999888888888999999884 4443 3455555554 346
Q ss_pred ce--EEEecC
Q psy106 183 RT--ILITTH 190 (321)
Q Consensus 183 ~t--Iil~tH 190 (321)
.. +|++-+
T Consensus 309 ~~~~lIVID~ 318 (444)
T 3bgw_A 309 GKRVIVMIDY 318 (444)
T ss_dssp SSCEEEEEEC
T ss_pred CCCeEEEEec
Confidence 66 777654
No 284
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.69 E-value=0.0012 Score=63.32 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc-----------CCCCCccEEEECC
Q psy106 36 STIYSLLGASGCGKTTLLSCITG-----------QNVLNGGNIHLSI 71 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~G-----------l~~p~~G~I~~~g 71 (321)
|-.++|+|++|+|||||++.|+| .+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4467778776654
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.69 E-value=0.00082 Score=58.50 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.|+||+|||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
No 286
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.001 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999986443
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.68 E-value=0.00095 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.|.||+||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.66 E-value=0.001 Score=56.14 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+..+.|+||.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999743
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.66 E-value=0.00089 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.++.|.|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4677899999999999999999983
No 290
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.63 E-value=0.00096 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++|+||+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999854
No 291
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.63 E-value=0.0011 Score=57.11 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999753
No 292
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.63 E-value=0.0011 Score=56.59 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999974
No 293
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.62 E-value=0.0075 Score=68.05 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=78.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||...++....... ..+.|+.-+..+.+ . . +...+.+.+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G----------~~vlyis~E~s~~~---~----~--a~~lGvd~~---- 436 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----------KTCAFIDAEHALDP---I----Y--ARKLGVDID---- 436 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------CCEEEECTTSCCCH---H----H--HHHTTCCGG----
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEccCchHH---H----H--HHHcCCCHH----
Confidence 89999999999999999999877764322111 23556554443221 0 0 111222110
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDPV-------------IAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~~-------------~~~~i~~ll~~ 177 (321)
.+. . ..+. +..| -+.+++.++ .+|+++++|..++-.... ..+.+.+.+++
T Consensus 437 ---------~L~-i-~~~~--~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~ 501 (1706)
T 3cmw_A 437 ---------NLL-C-SQPD--TGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 501 (1706)
T ss_dssp ---------GCE-E-ECCS--SHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred ---------HeE-E-cCCC--CHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHH
Confidence 000 0 0111 2332 334555554 579999999998766411 12334455555
Q ss_pred H----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCE
Q psy106 178 L----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGI 208 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~ 208 (321)
+ ++.|.|||+++|--. .++. ||-++.++...
T Consensus 502 L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 502 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp HHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 4 356999999988422 2345 88877776543
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.61 E-value=0.0012 Score=56.08 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.+++|.|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999999974
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0012 Score=55.70 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
++.+++|.|+.||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
No 296
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.60 E-value=0.00094 Score=61.64 Aligned_cols=37 Identities=35% Similarity=0.458 Sum_probs=28.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
-.++.++.|.||+||||||+.+.|+.-.+ .|.+.++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34678999999999999999999986432 34555654
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.57 E-value=0.0012 Score=56.75 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..+|.+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999853
No 298
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.57 E-value=0.0086 Score=68.50 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=79.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||...++.-.....+ .+.|+.-+..+.+ + . +...+.+.+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~----------~vlyis~E~s~~~---~----~--a~~lGvd~~---- 436 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP---I----Y--ARKLGVDID---- 436 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----------CEEEECTTSCCCH---H----H--HHHTTCCTT----
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC----------eEEEEEcCCCHHH---H----H--HHHcCCCHH----
Confidence 899999999999999999998887643322222 2445443332211 0 0 111121110
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID-P------------VIAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD-~------------~~~~~i~~ll~~ 177 (321)
.+. ..+. .+. .|-+.+++.++ .+|+++++|.-++-.. + ...+.+.+.++.
T Consensus 437 ---------~L~-I~~~---~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~ 501 (2050)
T 3cmu_A 437 ---------NLL-CSQP---DTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 501 (2050)
T ss_dssp ---------TCE-EECC---SSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred ---------HeE-EeCC---CCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHH
Confidence 000 1111 233 34456677664 5799999999876552 1 112345555666
Q ss_pred H----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCE
Q psy106 178 L----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGI 208 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~ 208 (321)
+ ++.|.+||+++|--. .++. ||.++.++...
T Consensus 502 L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 502 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp HHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecc
Confidence 5 356999999998432 1345 88888876544
No 299
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.52 E-value=0.01 Score=48.42 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
++.++++||.- .+++..+..+.+.+.+....+..+|.+|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 35789999964 67888888888888765333455665554
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.51 E-value=0.00081 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.+++|.|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999886654
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998643
No 302
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.48 E-value=0.0027 Score=62.21 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+.+....+...+.+++++|+..... ++.+. ...+.+.+ .+.++.++++.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l---~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKIL---YRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHH---TTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHH---HHcCCCEEEEEECccch
Confidence 47777778888888899888876654 45554 34455544 34678888887755543
No 303
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.0015 Score=55.42 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.46 E-value=0.0011 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=17.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35778999999999999999999743
No 305
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.42 E-value=0.0015 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 306
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.42 E-value=0.0028 Score=53.65 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-C----CCCCcc
Q psy106 38 IYSLLGASGCGKTTLLSCITG-Q----NVLNGG 65 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G-l----~~p~~G 65 (321)
-++|+|++|+|||||++.+++ . ..|+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 378999999999999976654 3 445655
No 307
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0016 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.+++-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 308
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.34 E-value=0.002 Score=54.67 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+.+.+++|.|+.||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999753
No 309
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.30 E-value=0.0036 Score=58.88 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=30.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
..+++..+.+ .|.-+.|.|++|+|||||...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888888 889999999999999999999986
No 310
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.30 E-value=0.0022 Score=52.71 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 7899999999999999998753
No 311
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.29 E-value=0.0018 Score=52.87 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.++|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998754
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0022 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+++-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999873
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.28 E-value=0.0025 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+|-++.|.|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.28 E-value=0.0018 Score=54.53 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 315
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.26 E-value=0.002 Score=52.44 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.25 E-value=0.002 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 317
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.24 E-value=0.0022 Score=58.78 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.24 E-value=0.0024 Score=56.03 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.+++|.|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999984
No 319
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.23 E-value=0.0022 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999753
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.23 E-value=0.0025 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 321
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.22 E-value=0.0025 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997543
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.22 E-value=0.0022 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998753
No 323
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.0023 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999874
No 324
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.19 E-value=0.0023 Score=51.85 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 325
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.18 E-value=0.0024 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 326
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.17 E-value=0.0028 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q psy106 36 STIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~G 58 (321)
..+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.17 E-value=0.0027 Score=54.95 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.17 E-value=0.003 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
..+-+++|.|+.||||||+.+.|+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.15 E-value=0.0028 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+..+++|.|+.||||||+.+.|+-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999974
No 330
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.15 E-value=0.0025 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998643
No 331
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.14 E-value=0.0025 Score=52.03 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 332
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.14 E-value=0.0024 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998653
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.14 E-value=0.0024 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
--++++|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999975
No 334
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.14 E-value=0.0025 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998643
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.13 E-value=0.0024 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+.++.|+||.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
No 336
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.0017 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
=-++++|++|||||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999874
No 337
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.13 E-value=0.0025 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998754
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.13 E-value=0.0026 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.12 E-value=0.0026 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 340
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.11 E-value=0.0027 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 341
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.10 E-value=0.0027 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999753
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.08 E-value=0.0038 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+.-.++++|+.|||||||++.+++-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999874
No 343
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.08 E-value=0.0027 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999865
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.08 E-value=0.0034 Score=51.92 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 345
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.07 E-value=0.0035 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
++++|.|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.06 E-value=0.0033 Score=54.51 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.04 E-value=0.0037 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
No 348
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.03 E-value=0.003 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 349
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.02 E-value=0.0031 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 350
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.02 E-value=0.0078 Score=59.80 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.+..-+.|.||+|+|||++.++++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3445568899999999999999998654
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.01 E-value=0.0031 Score=51.23 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+++
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999986
No 352
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.99 E-value=0.02 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++.-+.|.||.|+|||||.+.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999865
No 353
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.98 E-value=0.0037 Score=51.51 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.98 E-value=0.0033 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 355
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.97 E-value=0.0034 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999975
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.96 E-value=0.0033 Score=52.96 Aligned_cols=22 Identities=50% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.96 E-value=0.0032 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 358
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.94 E-value=0.0038 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
++++|+.|+|||||++.+.|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 68999999999999999998654
No 359
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.92 E-value=0.0037 Score=50.82 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
No 360
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.92 E-value=0.028 Score=64.36 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+++|+.+.|.||.|+|||||...++-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999988864
No 361
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.92 E-value=0.0035 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+++-
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999853
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.90 E-value=0.0043 Score=54.54 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
+++|.||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 363
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.89 E-value=0.0038 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.89 E-value=0.0042 Score=55.57 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.87 E-value=0.0039 Score=51.20 Aligned_cols=22 Identities=36% Similarity=0.672 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0039 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998643
No 367
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.86 E-value=0.0044 Score=57.50 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.85 E-value=0.0047 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
++-+++|.||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999973
No 369
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.84 E-value=0.004 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 370
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.81 E-value=0.0047 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
+++|+|+.|||||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999985
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.80 E-value=0.005 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++||.|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999853
No 372
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.80 E-value=0.0041 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 373
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.79 E-value=0.0045 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998653
No 374
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.79 E-value=0.046 Score=50.16 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGID-PVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD-~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+++++++||.- .|. +..+..+...+.+.. .+..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence 78999999984 344 666777777776543 356788888877643
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.79 E-value=0.0043 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 376
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.78 E-value=0.0045 Score=56.02 Aligned_cols=23 Identities=43% Similarity=0.731 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999864
No 377
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.77 E-value=0.0048 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.=-++++|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457999999999999999998643
No 378
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.76 E-value=0.0045 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999854
No 379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.75 E-value=0.0048 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 380
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.74 E-value=0.0047 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.74 E-value=0.0038 Score=53.38 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.74 E-value=0.0045 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 383
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0045 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999863
No 384
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.73 E-value=0.0061 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
-+|.++.|-|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999976543
No 385
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.73 E-value=0.0028 Score=58.56 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++-++||.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999863
No 386
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.0051 Score=56.35 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q psy106 36 STIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.-+++|.|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 387
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.73 E-value=0.0048 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
No 388
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.72 E-value=0.0044 Score=59.45 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999874
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.70 E-value=0.0049 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998643
No 390
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.70 E-value=0.0045 Score=56.16 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|++|+|||||++.|.|--
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999987653
No 391
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.69 E-value=0.0063 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+..+.|.||.|+||||+++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998654
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.69 E-value=0.0051 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999975
No 393
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.68 E-value=0.0051 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999854
No 394
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.67 E-value=0.011 Score=52.34 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566655554 6889999999999999999999853
No 395
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.005 Score=52.07 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 799999999999999999864
No 396
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.65 E-value=0.005 Score=55.09 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+|.++.|.||.||||||+++.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999997654
No 397
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.65 E-value=0.0027 Score=62.91 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=32.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
+++.+ +.+-+|+..+|+||+|+|||||++.|+.-.....+.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 55555 6788999999999999999999999986554333434
No 398
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.64 E-value=0.0055 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-.++++|+.|||||||++.+++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 399
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.64 E-value=0.0061 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.63 E-value=0.0062 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+|-.+.|.|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999975
No 401
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.62 E-value=0.02 Score=56.83 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=54.3
Q ss_pred CCCCccChHHHHHHHHHH--HHhc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 128 RKCGSLSGGQQRRVSLAI--TLLH---------------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~--aL~~---------------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
+..+++||||+|-.-+|. |+++ .-.++++||. +-+|....+..+++++++ |.=+|++|-
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP 450 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAP 450 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECc
Confidence 457899999999654443 3332 2357999999 999999999999999876 777889987
Q ss_pred ChhHHhhcCEEEEEe
Q psy106 191 YIDEAKKSHMIGLMR 205 (321)
Q Consensus 191 ~l~~~~~~drv~il~ 205 (321)
+ .....+|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 7 2234477776553
No 402
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.62 E-value=0.0033 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-.++++|+.|||||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 403
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.61 E-value=0.0061 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999854
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.61 E-value=0.0054 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378999999999999999983
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.60 E-value=0.0061 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.59 E-value=0.0064 Score=52.77 Aligned_cols=21 Identities=38% Similarity=0.320 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999974
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0063 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999853
No 408
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.58 E-value=0.0047 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 409
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.58 E-value=0.0058 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+++-
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.58 E-value=0.006 Score=55.57 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 411
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.58 E-value=0.0055 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 412
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.58 E-value=0.0068 Score=55.19 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCccE
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGN 66 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~ 66 (321)
-.++++|++|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 378999999999999999999876544443
No 413
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.57 E-value=0.0072 Score=54.38 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999976543
No 414
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.56 E-value=0.0061 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999853
No 415
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.55 E-value=0.006 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998643
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.55 E-value=0.006 Score=51.96 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++|+|++|+|||||++.++|
T Consensus 9 v~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999986
No 417
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.55 E-value=0.0062 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999853
No 418
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.55 E-value=0.0058 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998744
No 419
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.53 E-value=0.0078 Score=53.20 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|.++.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999976543
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.52 E-value=0.0071 Score=55.09 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.|.|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 421
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.52 E-value=0.0064 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 422
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0065 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 423
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.50 E-value=0.0072 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.49 E-value=0.0065 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 425
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.49 E-value=0.0061 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0061 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999988753
No 427
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.48 E-value=0.0061 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 428
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.48 E-value=0.0054 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+++-
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999863
No 429
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0068 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.47 E-value=0.0069 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 431
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.46 E-value=0.0068 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 432
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.45 E-value=0.0068 Score=51.61 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 433
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.45 E-value=0.0079 Score=51.64 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999754
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.44 E-value=0.0069 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
=-++++|+.|+|||||++.+++-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998643
No 435
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.44 E-value=0.013 Score=61.71 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
..+.|.||+|+|||++.+.|+......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478899999999999999999876543
No 436
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.43 E-value=0.0091 Score=52.65 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+..+.|.|+.||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 437
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.43 E-value=0.0087 Score=50.77 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
-++++|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999988543
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.42 E-value=0.0081 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.39 E-value=0.0081 Score=51.90 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 440
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.34 E-value=0.0075 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 441
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.33 E-value=0.0098 Score=52.78 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.+|.++.+-|+.||||||+++.|.-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999876544
No 442
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.32 E-value=0.029 Score=58.25 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+.|.||+|+|||++.++++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.31 E-value=0.0085 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998643
No 444
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.31 E-value=0.01 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998655
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.31 E-value=0.0076 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.29 E-value=0.0085 Score=58.05 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
=.+..++.++|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999975
No 447
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.28 E-value=0.0084 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+..+.|.||.|+||||+++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998654
No 448
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.27 E-value=0.0087 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888753
No 449
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.26 E-value=0.0056 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=8.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998754
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.24 E-value=0.011 Score=52.77 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.+|.++.+.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999976543
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.24 E-value=0.0083 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
No 452
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.23 E-value=0.014 Score=51.00 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred HhcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHH-hCCceEEEecCChhH----------Hhh-cCEEEEEe
Q psy106 147 LLHDPELLILDEPTS----GIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDE----------AKK-SHMIGLMR 205 (321)
Q Consensus 147 L~~~P~lllLDEPts----gLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~----------~~~-~drv~il~ 205 (321)
--.+|+++++|--+. .-|+....++...++.++ +.|.++++++|--.. .+. ||-|+.++
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 345899999996432 114445566666676765 569999999985321 233 77776664
No 453
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.22 E-value=0.0085 Score=54.26 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|||||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 454
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.20 E-value=0.01 Score=56.43 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998654
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.20 E-value=0.0097 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|+|||||++.++|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.18 E-value=0.0089 Score=50.94 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 457
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.18 E-value=0.0092 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 458
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.17 E-value=0.012 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998643
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.15 E-value=0.0054 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|||||||++.+++-.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
No 460
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.12 E-value=0.01 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.12 E-value=0.0083 Score=53.90 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..++.+++|.|+.||||||+.+.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999998665
No 462
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.07 E-value=0.0026 Score=62.34 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=28.7
Q ss_pred EEEeCC--cEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE
Q psy106 31 MTVQKS--TIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68 (321)
Q Consensus 31 l~i~~G--ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~ 68 (321)
|.+.++ .+++++|++|+||||++..|++.+...+..+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 444444 59999999999999999999987764333343
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.04 E-value=0.014 Score=55.10 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.+++|.||+|||||||...|+--.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999999998544
No 464
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.01 E-value=0.011 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-.++|+|+.|+|||||++.++.-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
No 465
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.97 E-value=0.013 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
...+..++.|+||.||||||..+.|+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHH
Confidence 44567789999999999999999997
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.95 E-value=0.014 Score=51.20 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++|+|++|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999874
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.95 E-value=0.016 Score=49.82 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=36.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh-----------HHhhcCEEEEEe
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID-----------EAKKSHMIGLMR 205 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~-----------~~~~~drv~il~ 205 (321)
.+++++++||--. +++. +.+.++.+.+.|..|+++.++.+ ..+.||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3688999999743 5443 55566666666999999888554 234588886654
No 468
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.93 E-value=0.0082 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999864
No 469
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.91 E-value=0.012 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
No 470
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.88 E-value=0.0053 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=4.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 471
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.88 E-value=0.0029 Score=56.67 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=22.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++..++| +.|.||+|+|||||.++++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3444555 779999999999999999874
No 472
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.013 Score=50.77 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.84 E-value=0.015 Score=54.86 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998654
No 474
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.82 E-value=0.016 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.++.|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999754
No 475
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.81 E-value=0.017 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
|.+++|=|+-||||||+++.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999986553
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.80 E-value=0.013 Score=50.16 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988874
No 477
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.76 E-value=0.066 Score=48.18 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=38.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCC-----------hhHHhhcCEEEEEe
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY-----------IDEAKKSHMIGLMR 205 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~-----------l~~~~~~drv~il~ 205 (321)
.+.+++++||----.| +.++++.+.+.|+.||++-++ .+.++.||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7889999999977654 556665666689999999999 22345699887764
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.72 E-value=0.014 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999853
No 479
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.68 E-value=0.015 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 480
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.02 Score=48.30 Aligned_cols=44 Identities=9% Similarity=0.268 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~ 194 (321)
.+|.++++||. ..+++.....+.+.+.+. ..+..+|++|+..+.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhh
Confidence 36889999995 557777777777777553 235667888877654
No 481
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.49 E-value=0.021 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
++.|+||.||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999983
No 482
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.44 E-value=0.023 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..++.|.||+|||||||...|+-..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998543
No 483
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.34 E-value=0.017 Score=54.66 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+.-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999999986653
No 484
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.23 E-value=0.054 Score=46.82 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=24.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
.++. ++---.|.-+.|.|++|+|||||...+.
T Consensus 6 ~lHa-s~v~v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 6 TWHA-NFLVIDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEES-EEEEETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEcCCCCCHHHHHHHHH
Confidence 3444 3444568889999999999999998876
No 485
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.11 E-value=0.024 Score=54.69 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++|+|+.++|||||++.|+|--
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999753
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.11 E-value=0.034 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
-.++++|.+|+|||||+|.|.|-..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999998653
No 487
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.09 E-value=0.019 Score=49.53 Aligned_cols=20 Identities=45% Similarity=0.767 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHH-HHc
Q psy106 39 YSLLGASGCGKTTLLSC-ITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~-l~G 58 (321)
++++|+.|+|||||++. +.|
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 78999999999999998 544
No 488
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.05 E-value=0.024 Score=53.55 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=22.8
Q ss_pred CccChHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy106 131 GSLSGGQQRRVSLAITL---LH--DPELLILDEPT 160 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL---~~--~P~lllLDEPt 160 (321)
..+|+||+||.+++++| .. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 76 89999999997
No 489
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.08 E-value=0.0095 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 478999999999999988864
No 490
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.93 E-value=0.0064 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988643
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.90 E-value=0.033 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+++|.||+|||||||.+.|+--
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999999743
No 492
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.75 E-value=0.033 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+..-+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999864
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.74 E-value=0.034 Score=49.88 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-.||+||.||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 479999999999999999863
No 494
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.70 E-value=0.038 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998654
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.68 E-value=0.038 Score=51.45 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
+|..+.|.||.|+||||+.+.++..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999976643
No 496
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.67 E-value=0.034 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.-+.|.||.|+||||+.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457799999999999999998755
No 497
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.66 E-value=0.043 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.64 E-value=0.029 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 499
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.56 E-value=0.024 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.47 E-value=0.038 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999765
Done!