RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy106
(321 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 192 bits (490), Expect = 1e-59
Identities = 86/229 (37%), Positives = 133/229 (58%), Gaps = 12/229 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V N K++ LD + V+ I+ LLG +G GKTTLL + G G I
Sbjct: 4 VIEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ ++++G++PQ+ SLYPE T+ E + ++ +YG+S ++ +E+ E L
Sbjct: 63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L L +K +LSGG ++R+S+A+ LLHDPELLILDEPTSG+DP EIW L L
Sbjct: 123 LFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLREL 182
Query: 179 AESG-RTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMK 225
A+ G TIL++TH ++EA++ + ++ G ++ E P+ L EK+ K
Sbjct: 183 AKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 172 bits (438), Expect = 9e-53
Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 11/220 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+++ N K + +D L + V K I+ LLG +G GKTT L +TG+ G +
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 69 L---SITS-----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ SI + ++ LG+ PQ +L+ E T+ E + +Y + G+ +IKE+ E L +
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L L ++ +LSGG +R++SLAI L+ P +L+LDEPTSG+DP IW+ +L +
Sbjct: 121 LGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
GR+I++TTH +DEA+ I +M G L P+ L
Sbjct: 181 -KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 156 bits (397), Expect = 3e-47
Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 46/210 (21%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I V N KR+ K LD + +TV+K IY LLG +G GKTTL+ I G + G I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ K+++G++P++ SLY T+ E +
Sbjct: 59 VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL------------------------ 94
Query: 121 LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
LSGG ++R++LA LLHDPELLILDEPTSG+DP E W L L +
Sbjct: 95 -----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKGIL 209
G+TIL+++H ++EA++ + ++ G +
Sbjct: 144 EGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 144 bits (365), Expect = 5e-41
Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 18/207 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTL---LSCIT----GQNVLNGGNIHLSITS----- 73
+D + V++ ++ LG +G GKTT L+ + G + G +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG----YDVVREPRKV 64
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGS 132
++ +G +PQ S+ + T E + G +YG+ + +E+AE L L L R G+
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT 124
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
SGG +RR+ +A +L+H P++L LDEPT+G+DP IW+++ L E G TIL+TTHY+
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 193 DEAKK-SHMIGLMRKGILLEESPPKVL 218
+EA K I ++ G ++ E P+ L
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEEL 211
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 139 bits (352), Expect = 5e-40
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ ++ K + S LD L +TV+ +LLG SGCGKTTLL I G + G I
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 69 L---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
+ +T ++ +G + Q +L+P T+ E I + GL + G+ +I+ + L L
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAF-GLKLRGVPKAEIRARVRELLEL 117
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YL 178
+ L R LSGGQQ+RV+LA L +P LL+LDEP S +D + EE+ L
Sbjct: 118 VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211
E G T + TH +EA + I +M +G +++
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 136 bits (346), Expect = 5e-39
Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 19/217 (8%)
Query: 9 IRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------- 57
I ++N Y K+ L + ++++K +++G SG GK+TLL+ +
Sbjct: 1 IELKNLSKTYGGGGEKVQ-ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59
Query: 58 -----GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
G ++ L+ ++ +GF+ Q +L P+ T E + L+ G+ ++ +E
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119
Query: 113 KAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+AE L + L LSGGQQ+RV++A L +DP++++ DEPT +D +E+
Sbjct: 120 RAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 172 WNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKG 207
L L E+G TI++ TH + A+ + I +R G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 136 bits (345), Expect = 5e-39
Identities = 69/214 (32%), Positives = 122/214 (57%), Gaps = 14/214 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+++EN KR+ K LD + +T+ +Y LLG +G GKTTL+ + + G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 69 L---SITSKKQ-----LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ + + Q +G++PQ+ +YP FT+ E + Y + G+ +++K + + + L
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117
Query: 121 LHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
++L K+K GSLSGG +RRV +A L+ DP +LI+DEPT+G+DP N L L
Sbjct: 118 VNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177
Query: 180 ESGRTILITTHYIDEAKKS-HMIGLMRKGILLEE 212
E R ++++TH +++ + + + ++ KG L+ E
Sbjct: 178 E-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 136 bits (346), Expect = 6e-39
Identities = 67/224 (29%), Positives = 120/224 (53%), Gaps = 18/224 (8%)
Query: 8 AIRVENAYKRHSSKLPY--VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TG 58
I ++N K + L + + ++ +++G SG GK+TLL+ + +G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 59 QNVLNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
+ ++NG ++ L+ +K++GF+ Q +L P+ T+ E + LI G S + K
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 113 KAEYLQALLHLNHF--KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
AE L +L L K+K LSGGQQ+RV++A L+++P++++ DEPT +D A+E
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180
Query: 171 IWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213
+ L L E G+TI++ TH + AK + + ++ G + EE
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEEE 224
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 136 bits (344), Expect = 7e-39
Identities = 58/216 (26%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 9 IRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I + KR K +D + TV+ + LLG +G GKTT L + G + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 67 IHLS--------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
+ ++++LGF+ LY T E + Y+ +YG+ ++ + E L
Sbjct: 62 ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELA 121
Query: 119 ALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
L + R+ G S G +++V++A L+HDP +L+LDEPT+G+D + + +
Sbjct: 122 DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 178 LAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212
L G+ IL +TH + E ++ + ++ +G ++ E
Sbjct: 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 135 bits (343), Expect = 9e-39
Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN KR LD + +V+K I+ LLG +G GKTT + I G + + G +
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 69 -----LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL 123
L I ++ ++G++P++ LYP+ + + + Y + G+ ++ + + + L L
Sbjct: 59 FDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL 118
Query: 124 -NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ ++ LS G Q++V ++HDPELLILDEP SG+DPV E + + + LA +G
Sbjct: 119 SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 183 RTILITTHYIDEAKK-SHMIGLMRKG 207
+T++++TH ++ ++ + L+ KG
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKG 204
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 134 bits (341), Expect = 5e-38
Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I ++N K K VL + ++V+K + ++G SG GK+TLL C+ +G
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 62 LNGGNIHLSITSKK---QLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAEY 116
++G ++ K ++G + QQ +L+P T+ E + + +S + +EKA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTL-APVKVKKLSKAEAREKALE 119
Query: 117 LQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L + L + LSGGQQ+RV++A L DP++++ DEPTS +DP + E+ + +
Sbjct: 120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
LAE G T++I TH + A++ + + M +G ++EE PP+ +
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 136 bits (344), Expect = 7e-38
Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 12/223 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I N KR+ KL V+D L VQ+ + LLG +G GKTT L + G + G+I
Sbjct: 7 PIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L + +++++G +PQ +L P+FT+ E + +G +G+S + L
Sbjct: 65 SLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE 124
Query: 120 LLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L N K G LSGG +RR++LA L++DP++L+LDEPT+G+DP +W L L
Sbjct: 125 FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TIL+TTH+++EA++ + ++ +G + E P L+E
Sbjct: 185 LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 132 bits (335), Expect = 2e-37
Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 19/201 (9%)
Query: 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH- 68
++N + LD + +T++K ++G +G GK+TLL + G G +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 69 ----LSITSKKQL----GFMPQQISLYPE--F---TIDEMICYYGLIYGMSLQQIKEKAE 115
L+ S K+L G + Q P+ F T++E + + G+ ++I+E+ E
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQ----NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVE 116
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L+ L R +LSGGQ++RV++A L DP++L+LDEPT+G+DP E+
Sbjct: 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 175 LLYLAESGRTILITTHYIDEA 195
L L G+TI+I TH +D
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLL 197
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 133 bits (337), Expect = 8e-37
Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 16/225 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I EN KR+ +K +D + +T+++ L+G SG GKTT L I +G+ +
Sbjct: 2 IEFENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 62 LNGGNI--HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I + ++++G++ QQI L+P T+ E I + G ++IK++A+ L
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 120 LLHLN--HFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L+ L+ + R LSGGQQ+RV +A L DP +L++DEP +DP+ +++ +
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 177 YL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219
L E G+TI+ TH IDEA K + I +M G +++ P +L
Sbjct: 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 130 bits (330), Expect = 1e-36
Identities = 66/196 (33%), Positives = 109/196 (55%), Gaps = 10/196 (5%)
Query: 9 IRVENAYKRHSSKLPY--VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
+ V N K + L+ + ++V++ +L+G SGCGK+TLL I G G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 67 IHL---SITSK-KQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALL 121
+ + +T G++ QQ +L P T+ + + GL + G+ + +E+AE L L+
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL-GLELQGVPKAEARERAEELLELV 119
Query: 122 HLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-A 179
L+ F+ LSGG ++RV+LA L DP++L+LDEP S +D + E++ LL +
Sbjct: 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179
Query: 180 ESGRTILITTHYIDEA 195
E+G+T+L+ TH IDEA
Sbjct: 180 ETGKTVLLVTHDIDEA 195
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 129 bits (325), Expect = 5e-36
Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 13/221 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I VEN K++ + + V++ I+ LLG +G GKTT + +T G
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ ++++G + Q +S+ E T E + + +YG+ + +E+ + L
Sbjct: 59 VAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF 118
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
+ L R + SGG +RR+ +A +L+H PE+L LDEPT G+DP +W ++ L
Sbjct: 119 VGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
E G TIL+TTHY++EA++ + ++ G ++ E P+ L
Sbjct: 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 131 bits (331), Expect = 1e-35
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ ++N K S VL + + ++ LLG SGCGK+TLL I G G I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 68 HLS---IT----SKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQA 119
+ +T K+ + + Q +LYP T+ E I +GL + G+ +I ++ + +
Sbjct: 61 LIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI-AFGLKLRGVPKAEIDKRVKEVAK 119
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
LL L H RK LSGGQ++RV+LA L+ P++ +LDEP S +D + + + + L
Sbjct: 120 LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179
Query: 179 AES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222
E G T + TH EA + I +M G + + P L E+
Sbjct: 180 HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 129 bits (327), Expect = 6e-35
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 19/232 (8%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
K A+ + N K +D + + ++K +LLG SGCGKTTLL I G +
Sbjct: 1 MPKPALEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58
Query: 64 GGNIHL---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL--QQIKEKA 114
G I L IT K+ +G + Q +L+P T++E + +GL L +IK +
Sbjct: 59 SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARV 117
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
E L+ L F RK LSGGQQ+RV+LA L+ +P++L+LDEP S +D + E++
Sbjct: 118 EEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK 177
Query: 174 HLLYLA-ESGRTILITTHYIDEAKKSHM---IGLMRKGILLEESPPKVLLEK 221
L L E G T + TH +EA M I +M G + + P+ + E+
Sbjct: 178 ELKELQRELGITFVYVTHDQEEA--LAMSDRIAVMNDGRIEQVGTPEEIYER 227
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 126 bits (319), Expect = 1e-34
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 15/220 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ +E K VL+ + ++V+K ++LG SGCGK+TLL I G G +
Sbjct: 3 LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 68 HLS---ITS-KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLH 122
L +T +G++ Q+ +L P T+ + + GL + G S + +E+A+ L L+
Sbjct: 61 LLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNV-ALGLELRGKSKAEARERAKELLELVG 119
Query: 123 LNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AE 180
L F + LSGG ++RV++A L P+LL+LDEP +D + EE+ + LL L E
Sbjct: 120 LAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 181 SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
+ +T+L+ TH +DEA + L + ++L P ++ E
Sbjct: 180 TRKTVLLVTHDVDEA-----VYLADRVVVLSNRPGRIGEE 214
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 125 bits (317), Expect = 4e-34
Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 9/207 (4%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ +E K K +D + V I+ LLG +G GKTT I G G I
Sbjct: 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 68 H-----LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-LQALL 121
LS K ++G++P++ LYP+ T+++ + Y + GM +I++K + L+ L
Sbjct: 60 TWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLE 119
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
+ +K LS G Q+++ ++H+PELLILDEP SG+DPV E + + + L E
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKG 207
G TI+ ++H ++ ++ + +++KG
Sbjct: 180 GATIIFSSHRMEHVEELCDRLLMLKKG 206
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 123 bits (311), Expect = 1e-33
Identities = 64/237 (27%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
+ V + K + SK+ V D + ++ I LLG +G GKTTLL I + + G +
Sbjct: 2 LEVTDLTKSYGSKVQAVRD-VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 68 --HLSITS-----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ ++++G + + LY T E + Y+ + G+S ++IK + L
Sbjct: 61 IDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKR 120
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L L + R+ G S G +++V++A L+HDP +L+LDEPTSG+D + + + L
Sbjct: 121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 180 ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
GR ++ ++H + E + +I ++ KG ++ E + L + +++LE++F
Sbjct: 181 NEGRAVIFSSHIMQEVEALCDRVI-VLHKGEVVLEGSIEALDARTVLRNLEEIFAFA 236
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 123 bits (311), Expect = 8e-33
Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 18/227 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI + K + K V++ L TV + LLG +G GK+T+ I G + G I
Sbjct: 41 AIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + ++ ++G +PQ +L EFT+ E + +G +GMS ++I+ + +
Sbjct: 99 TVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEA---VIPS 155
Query: 120 LLHLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
LL + K + LSGG +RR++LA L++DP+LLILDEPT+G+DP IW L
Sbjct: 156 LLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L G+TIL+TTH+++EA++ + ++ G + E P L+++
Sbjct: 216 RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 120 bits (302), Expect = 1e-32
Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 13/212 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
++ + K + K VLD + + V+K IY LG +G GKTT + I G + G I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 69 LSITSKKQLGFMPQQI-------SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
S ++ ++I YP T E + + G+ ++I E + + L
Sbjct: 59 FDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV--GL 116
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
+ K+K S G ++R+ +A+ LL +P+LLILDEPT+G+DP +E+ +L L +
Sbjct: 117 K-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212
G T+LI++H + E +K + IG++ KG L+EE
Sbjct: 176 GITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 120 bits (303), Expect = 6e-32
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 18/227 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI + K + K+ V++ L T+ + + LLG +G GK+T+ + G + G I
Sbjct: 4 AIDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + ++ +G +PQ +L PEFT+ E + +G +GMS ++I+ + +
Sbjct: 62 TVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEA---VIPS 118
Query: 120 LLHLNHFKRKC----GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
LL + K LSGG +RR++LA L++DP+LLILDEPT+G+DP IW L
Sbjct: 119 LLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L G+TIL+TTH+++EA++ + ++ G + E P L+++
Sbjct: 179 RSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 116 bits (292), Expect = 1e-31
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 48/212 (22%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
+ ++N KR+ K VL+ + + ++ I +LLG SG GK+TLL CI G + G+I
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 68 ----------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
++++G + Q +L+P T+ E I
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------- 99
Query: 118 QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
LSGGQQ+RV+LA L DP++L+LDEPTS +DP+ E+ L
Sbjct: 100 --------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145
Query: 178 L-AESGRTILITTHYIDEAKK-SHMIGLMRKG 207
L A+ G T+++ TH +DEA + + + ++R G
Sbjct: 146 LQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 118 bits (298), Expect = 2e-31
Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
+ VEN + K +LD L ++ K I +LG +G GK+TLL C+ G G
Sbjct: 1 MMLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 67 IHL------SITSK---KQLGFMPQQISLYPEFTIDEMICY----YGLIYGMSLQQIKEK 113
+ L S++ K K+L ++PQ S T+ E++ + ++G ++ +E
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 114 AEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
E LL L H R LSGG+++RV +A L + +L+LDEPTS +D E+
Sbjct: 119 VEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVL 178
Query: 173 NHLLYLA-ESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDV 230
L L E G T+++ H ++ A + + + L++ G ++ + P+ +L + ++L +V
Sbjct: 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE---ENLREV 235
Query: 231 F 231
+
Sbjct: 236 Y 236
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 116 bits (292), Expect = 3e-31
Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 17/203 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I ++N +K +VL + +TV+K + ++G SG GK+TLL CI + G I
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 69 L---SITSKK--------QLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAE 115
+ +T K ++G + QQ +L+P T+ E I I GMS + +E+A
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGMSKAEAEERAL 117
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L + L LSGGQQ+RV++A L +P++++ DEPTS +DP + E+ +
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 175 LLYLAESGRTILITTHYIDEAKK 197
+ LAE G T+++ TH + A++
Sbjct: 178 MKDLAEEGMTMVVVTHEMGFARE 200
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 116 bits (293), Expect = 4e-31
Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 14/224 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +EN K + + LD + + +++ ++LLG SGCGKTTLL I G G I
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 69 L---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
L IT+ K+ + + Q +L+P T+ E I + GL + + +IKE+ L
Sbjct: 59 LDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAF-GLRLKKLPKAEIKERVAEALDL 117
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
+ L + RK LSGGQQ+RV++A L+++P++L+LDEP +D + +++ L L
Sbjct: 118 VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177
Query: 179 AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEK 221
E G T + TH +EA S I +M KG + + P+ + E+
Sbjct: 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 114 bits (289), Expect = 9e-31
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 13/178 (7%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL----SITSKKQLGFM 80
VL+ + V+ +++G +G GK+TLL I G G+I + +K++G++
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYV 73
Query: 81 PQQISLYPEFTID-----EMICYYGLIYGMSLQQIKEKAEYLQAL--LHLNHF-KRKCGS 132
PQ+ S+ +F I M Y L + +KA+ +AL + L+ R+ G
Sbjct: 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSK-ADKAKVDEALERVGLSELADRQIGE 132
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGGQQ+RV LA L+ DP+LL+LDEP +G+DP E+I+ L L G TIL+ TH
Sbjct: 133 LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 114 bits (288), Expect = 2e-30
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 12/237 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ V R+ ++ LD + TV+ +LLG +G GK+TL S +T V G I
Sbjct: 1 ALEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 68 HL---SITSKK-----QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + +LG + QQ +L + ++ + + Y+ ++G+S + + + L A
Sbjct: 59 SVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLA 118
Query: 120 LLHLNHFKR-KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L L K L+GG +RRV +A LLH P LL+LDEPT G+DP I H+ L
Sbjct: 119 RLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRAL 178
Query: 179 A-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
A + G ++L TH +DE + + ++ +G +L + L LE FL L
Sbjct: 179 ARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLAL 235
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 114 bits (288), Expect = 2e-30
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 25/192 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----Q 76
LD + +V+ I+ L+G +G GKTTL + I+G G++ IT +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 77 LG----FMPQQISLYPEFTIDE--MI--------CYYGLIYGMSLQQIKEKAEYLQALLH 122
LG F Q L+PE T+ E M+ ++ +E+AE L +
Sbjct: 75 LGIGRTF--QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG 132
Query: 123 LNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
L R G LS GQQRR+ +A L DP+LL+LDEP +G++P EE+ + L E
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 182 GRTILITTHYID 193
G T+L+ H +D
Sbjct: 193 GITVLLVEHDMD 204
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 115 bits (289), Expect = 3e-30
Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 18/206 (8%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH------LSITSKKQLGF 79
V++ I+ ++G SG GK+TLL CI G+ +++G +I L +K++
Sbjct: 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISM 106
Query: 80 MPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQ 137
+ Q +L P T+ E + + GL + G+ + +E+A L+ L ++ + LSGG
Sbjct: 107 VFQSFALLPHRTVLENVAF-GLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGM 165
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAK 196
Q+RV LA L DP++L++DE S +DP+I E+ + LL L AE +TI+ TH +DEA
Sbjct: 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225
Query: 197 K-SHMIGLMRKGILLEESPPKVLLEK 221
+ I +M+ G L++ P+ +L
Sbjct: 226 RLGDRIAIMKDGRLVQVGTPEEILTN 251
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 114 bits (287), Expect = 4e-30
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 15/225 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I EN KR+ V + L + + K L+G SG GKTT + I +G+
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 62 LNGGNIHL--SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I + ++++G++ QQI L+P T++E I + ++I+E+A+ L A
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119
Query: 120 LLHL--NHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L+ L F R LSGGQQ+RV +A L DP LL++DEP +DP+ +++
Sbjct: 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179
Query: 177 YL-AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLL 219
L E G+TI+ TH IDEA + + I +M+ G +++ P +L
Sbjct: 180 RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 113 bits (285), Expect = 5e-30
Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 25/214 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQ----- 76
+L + +TV + I +LLG +G GKTTLL I G G+I IT
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 77 --LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-------K 127
+G++P+ ++PE T++E L+ G ++ ++ L+ + L F K
Sbjct: 75 AGIGYVPEGRRIFPELTVEE-----NLLLGAYARRRAKRKARLERVYEL--FPRLKERRK 127
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
+ G+LSGG+Q+ +++A L+ P+LL+LDEP+ G+ P I EEI+ + L + G TIL+
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
A + + ++ +G ++ E LL
Sbjct: 188 VEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 111 bits (279), Expect = 5e-30
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 42/192 (21%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
LD + +T++ I +L+G +G GK+TLL I G G I
Sbjct: 6 SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL-------- 57
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136
+ I+ P + I Y LSGG
Sbjct: 58 --IDGKDIAKLPLEELRRRIGY-------------------------------VPQLSGG 84
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196
Q++RV+LA LL +P+LL+LDEPTSG+DP E + L LAE GRT++I TH + A+
Sbjct: 85 QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144
Query: 197 K-SHMIGLMRKG 207
+ + +++ G
Sbjct: 145 LAADRVIVLKDG 156
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 113 bits (284), Expect = 7e-30
Identities = 67/197 (34%), Positives = 110/197 (55%), Gaps = 13/197 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
+R EN KR+ + V++ + ++V++ I LLG +G GKTT I G + G I
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 68 --HLSIT-------SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
IT ++ +G++PQ+ S++ + T++E I I G+S ++ +EK E L
Sbjct: 59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 119 ALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
H+ H K K SLSGG++RRV +A L +P+ L+LDEP +G+DP+ ++I +
Sbjct: 119 EEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
Query: 178 LAESGRTILITTHYIDE 194
L + G +LIT H + E
Sbjct: 179 LKDRGIGVLITDHNVRE 195
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 113 bits (284), Expect = 8e-30
Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I EN R+ + L + + ++K L+G +G GK+TLL + G G +
Sbjct: 3 MIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 68 ---HLSITSKKQLGFMPQQISL---YPE---F--TIDEMICYYGLIYGMSLQQIKEKAEY 116
L +S+K L + Q++ L P+ F T+++ + + G+ ++I+E+
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 117 LQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L+ L R +LSGGQ++RV++A L PE+L+LDEPT+G+DP E+ L
Sbjct: 122 ALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 176 LYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
L E G+TI+I TH ++ + ++ ++ G +L + P + + + L
Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVV-VLDDGKILADGDPAEIFN--DAELLLA 235
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 113 bits (284), Expect = 1e-29
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 29/240 (12%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQ 59
A+ VE+ +KR+ VL + + + S++G+SG GK+T L CI G
Sbjct: 5 NALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62
Query: 60 NVLNGGNI--------HLSITSKKQ-------LGFMPQQISLYPEFTIDEMICYYGL-IY 103
+NG I L K+Q LG + Q +L+ T+ E + + +
Sbjct: 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL 122
Query: 104 GMSLQQIKEKAEYLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162
G+S + E+AE A + + LSGGQQ+RV++A L +PE+++ DEPTS
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLE 220
+DP + E+ + LAE GRT+++ TH + A+ SH+I L +G + EE PP+ +
Sbjct: 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL-HQGKIEEEGPPEQVFG 241
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 111 bits (280), Expect = 3e-29
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I + K + VL + + V++ I +++G SG GK+TLL I G + G +
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 68 -------HLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAE 115
LS ++++G + Q +L+ T+ E + + + +S ++I+E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ L + LSGG ++RV+LA L DPELL+ DEPT+G+DP+ + I +
Sbjct: 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 175 LLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
+ L + G T ++ TH +D A + I ++ G ++ E P+ L
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 110 bits (276), Expect = 6e-29
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 41 LLGASGCGKTTLLSCITG-------QNVLNG-------GNIHLSITSKKQLGFMPQQISL 86
+ GASG GK+TLL CI G VLNG I+L ++++G + QQ +L
Sbjct: 28 IFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP-PQQRKIGLVFQQYAL 86
Query: 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAI 145
+P + E + + GL ++ + + L LL L+H R LSGG+++RV+LA
Sbjct: 87 FPHLNVRENLAF-GL-KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALAR 144
Query: 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSH-MIGL 203
L PELL+LDEP S +D + ++ L + ++ ++ TH + EA+ I +
Sbjct: 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV 204
Query: 204 MRKGILL 210
M G L
Sbjct: 205 MEDGRLQ 211
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 109 bits (275), Expect = 6e-29
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 38/159 (23%)
Query: 41 LLGASGCGKTTLLSCITGQNV---------LNGGNIHLSITSKKQLGFMPQQISLYPEFT 91
++G SG GK+TLL+ + G+ +NG + + +K +G++PQ L+P T
Sbjct: 40 IMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR-SFRKIIGYVPQDDILHPTLT 98
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDP 151
+ E + F K LSGG+++RVS+A+ L+ +P
Sbjct: 99 VRETL----------------------------MFAAKLRGLSGGERKRVSIALELVSNP 130
Query: 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LL LDEPTSG+D A ++ + L LA++GRTI+ + H
Sbjct: 131 SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 110 bits (277), Expect = 7e-29
Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 24/227 (10%)
Query: 9 IRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ V+N ++ + LD + +++K L+G SG GK+TL I G G
Sbjct: 2 LEVKNLSVSFPTGGGSVK-ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 66 NI-----HLSITSKKQL-------GFMPQ--QISLYPEFTIDEMIC--YYGLIYGMSLQQ 109
+I L S++ + Q SL P TI E I +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 110 IKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
KE L + L R LSGGQ++RV++A L +P+LLI DEPTS +D +
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 168 AEEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212
+I + L L E G T+L TH + K + + +M G ++EE
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 113 bits (284), Expect = 9e-29
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---IT----SKKQL 77
L + ++V+K LLG SGCGKTTLL I G G I+ IT K+
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 78 GFMPQQISLYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNHFKRKC-GSLSG 135
G + Q +L+P T+ + I YGL GM ++ E+ L L+ L +RK G LSG
Sbjct: 79 GIVFQSYALFPNLTVADNIA-YGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSG 137
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDE 194
GQQ+RV+LA L P LL+LDEP S +D + E + + L G T ++ TH +E
Sbjct: 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEE 197
Query: 195 A 195
A
Sbjct: 198 A 198
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 114 bits (289), Expect = 1e-28
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-------------SI 71
+D + +++ L+G SG GK+TL + G + G+I +
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 72 TSKKQLGFMPQQISLYPEFTIDEMICY-YGLIYGMSLQQIKEKAEYLQALLHL--NHFKR 128
+ Q+ F SL P T+ +++ + G S + + + L L+ L R
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR 425
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILI 187
LSGGQ++RV++A L +P+LLILDEP S +D + ++ N L L E G T L
Sbjct: 426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF 485
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+H + + + + +M G ++EE P + + E
Sbjct: 486 ISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519
Score = 101 bits (253), Expect = 9e-24
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 43/248 (17%)
Query: 9 IRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI--------- 56
+ VEN + ++P + + V+ I ++G SG GK+TL +
Sbjct: 6 LEVENLTVEFATDGGRVP-AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 57 --TGQNVLNGGNIHLSITS-------KKQLGFMPQQI--SLYPEFTIDEMIC-YYGLIYG 104
+G+ +L+G ++ L ++ K++ + Q SL P TI + I L
Sbjct: 65 ITSGEVILDGRDL-LGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK 123
Query: 105 MSLQQIKEKAEYLQALLHLNHFKRKCGS---LSGGQQRRVSLAITLLHDPELLILDEPTS 161
S + +++A L + L +R+ LSGG ++RV +A+ L P+LLI DEPT+
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 162 GIDPVIAEEIWNHLLYL-AESGRTILITTH------YI-DEAKKSHMIGLMRKGILLEES 213
+D +I + L L E G +L TH + D + +M KG ++E
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADR------VVVMYKGEIVETG 237
Query: 214 PPKVLLEK 221
P + +L
Sbjct: 238 PTEEILSN 245
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 109 bits (274), Expect = 1e-28
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ +EN KR + LD L + + LLG SGCGKTT L I G G I+
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 69 LS---IT----SKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
+ +T + + + Q +LYP T+ + I + GL + + +I E+ + L
Sbjct: 59 IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAF-GLKLRKVPKDEIDERVREVAEL 117
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
L + H RK LSGGQ++RV+L ++ +P++ ++DEP S +D + ++ L L
Sbjct: 118 LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ 177
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209
G T + TH EA + I +M G +
Sbjct: 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 110 bits (277), Expect = 1e-28
Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I VEN + ++ VL+ + ++V+K I +L+G +G GK+TLL I G + G I
Sbjct: 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 68 HLS------ITSKKQLGFMPQQISLYPEF--TIDEMI---CYY-GLIYGMSLQQIKEKAE 115
+ + ++G++PQ+ S+ F T+ +++ Y + ++ KEK +
Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ + R+ G LSGGQ++RV LA L +P+LL+LDEP +G+D +EI++
Sbjct: 122 EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181
Query: 175 LLYLAESGRTILITTHYIDEAKK 197
L L + G+T+L+ TH +
Sbjct: 182 LKELRQEGKTVLMVTHDLGLVMA 204
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 109 bits (275), Expect = 1e-28
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 20/183 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI----------TSK 74
+L+ + + V+ + ++LG+SG GKTTLL I+G+ V GG I +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR-VEGGGTTSGQILFNGQPRKPDQFQ 80
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQ----ALLHLNHFK 127
K + ++ Q L P T+ E + Y ++ S K++ E + AL +
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
K +SGG++RRVS+A+ LL DP++LILDEPTSG+D A + + L LA R +++
Sbjct: 141 VK--GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVIL 198
Query: 188 TTH 190
T H
Sbjct: 199 TIH 201
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 108 bits (273), Expect = 2e-28
Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 37/237 (15%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---- 64
I + + + K + L + + + K I +L+G SGCGK+TLL + N L
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 65 -GNIHLS-----------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
G + L + ++++G + Q+ + +P +I Y + YG+ L IK
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSI-----YDNVAYGLRLHGIKL 112
Query: 113 KAEY----LQAL----LHLNHFKRK--CGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162
K E +AL L + K + LSGGQQ+R+ LA L ++PE+L+LDEPTS
Sbjct: 113 KEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
+DP+ +I + L + TI+I TH + +A + + + G L+E P + +
Sbjct: 172 LDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 106 bits (268), Expect = 4e-28
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 47/208 (22%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +N + + VL + +T++ +++G SG GK+TLL + G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 69 L------SITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + + K + ++PQ L+ TI E I
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRENI----------------------- 96
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
LSGGQ++R+++A LL DP +LILDE TS +DP I L LA
Sbjct: 97 -------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143
Query: 180 ESGRTILITTHYIDEAKKSHMIGLMRKG 207
+ G+T+++ H + + + I ++ G
Sbjct: 144 K-GKTVIVIAHRLSTIRDADRIIVLDDG 170
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 108 bits (271), Expect = 7e-28
Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 25/219 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I VEN K + + L + +++ +L+G SG GK+TLL C+ G G++
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 69 LSITS------------KKQLGFMPQQISLYPEFTI---------DEMICYYGLIYGMSL 107
+ T ++Q+G + QQ +L ++ + L
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
++ + L+ + L+ ++ LSGGQQ+RV++A L+ P+L++ DEP + +DP
Sbjct: 120 EEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179
Query: 168 AEEIWNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGL 203
+ ++ + L + E G T++++ H +D A++ ++GL
Sbjct: 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL 218
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 108 bits (271), Expect = 9e-28
Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 19/222 (8%)
Query: 15 YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI 67
Y L+ + + +++ ++G SG GK+TL + +G +L+G +
Sbjct: 13 YGGGKFAFH-ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71
Query: 68 HLSITSK---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
+K + + + Q SL P T+ ++ + L + +++ L +
Sbjct: 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIAELLDQVG 129
Query: 123 LN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
L R+ LSGGQ++R+++A L+ +P+LLILDEPTS +D + +I N LL L +
Sbjct: 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK 189
Query: 181 S-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G T L +H + + I +M G ++E P + LL
Sbjct: 190 ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 107 bits (269), Expect = 1e-27
Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 22/214 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI---HLSITSKK------ 75
VL + + + + + ++G SG GK+TLL CI + G++ L + K
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 76 --QLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHL----NHFKR 128
+ G + QQ L+P T E + + L + G S ++ +++A L A + L +H+
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP- 134
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGGQQ+RV++A L P+L++ DEPTS +DP + E+ + LAE G T++I
Sbjct: 135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIV 192
Query: 189 THYIDEAKK--SHMIGLMRKGILLEESPPKVLLE 220
TH I A+K S +I + KG + E+ P+VL++
Sbjct: 193 THEIGFAEKVASRLI-FIDKGRIAEDGDPQVLIK 225
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 113 bits (283), Expect = 1e-27
Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 10/179 (5%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNVLNGG-NIHLSITSKKQ-L 77
+D+L +T ++ I + LG +G GKTT LS +TG VL GG +I ++ + +Q L
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGG 136
G PQ L+ T+ E I +Y + G S ++ + + E + L+H + + LSGG
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGG 1065
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
QR++S+AI + D ++++LDEPTSG+DP IW+ LL SGRTI+++TH++DEA
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD-LLLKYRSGRTIIMSTHHMDEA 1123
Score = 98.2 bits (244), Expect = 2e-22
Identities = 62/209 (29%), Positives = 113/209 (54%), Gaps = 10/209 (4%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN-- 66
+R+ K +S +D+LC+ V+ + LLG +G GKTT +TG + G+
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 67 -----IHLSITSKKQ-LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-LQA 119
I +I+ Q +G+ PQ ++ T E + Y + G+ ++I++ A + +Q+
Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + R G+ SGG +R++S AI L+ P L++LDEPT+G+DP +WN ++ +
Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKG 207
GR +++T+H ++E + + +M KG
Sbjct: 2118 REGRAVVLTSHSMEECEALCTRLAIMVKG 2146
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 107 bits (270), Expect = 2e-27
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 19/230 (8%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN------- 60
I V K ++ +LD + + V + I ++LG SG GK+TLL I G
Sbjct: 8 LIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 61 VLNGGNI-HLSITSK----KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKA 114
+++G +I LS K++G + QQ +L+ T+ E + + + + I+E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 115 -EYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
L+ + L LSGG ++RV+LA + DPELL LDEPTSG+DP+ A I
Sbjct: 126 LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185
Query: 173 NHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ L ++ G T+++ TH +D + + ++ G ++ E P+ LL
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 106 bits (267), Expect = 2e-27
Identities = 63/213 (29%), Positives = 115/213 (53%), Gaps = 20/213 (9%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITS----KKQ 76
+ L + + V++ + +LG +G GK+ LL I G + G I L+ IT+ K+
Sbjct: 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRD 72
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-----QIKEKAEYLQALLHLNH-FKRKC 130
+ ++PQ +L+P T+ + I Y G+ + +I+ K + +L ++H RK
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITT 189
+LSGG+Q+RV++A L+ +P++L+LDEP S +D E++ L + E G T+L T
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 190 HYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
H +EA + + +M G L++ P+ + +K
Sbjct: 188 HDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 104 bits (261), Expect = 8e-27
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 20/207 (9%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLN 63
++N K+ K+ +LD L +T++K +Y+++G SG GK+TLL+ I +GQ LN
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 64 GGNIHLSITSKK-------QLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKA 114
G + SKK +LG++ Q +L T++E + GL Y ++ ++K
Sbjct: 59 GQET-PPLNSKKASKFRREKLGYLFQNFALIENETVEENL-DLGLKYKKLSKKEKREKKK 116
Query: 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
E L+ + K+K LSGG+Q+RV+LA +L P L++ DEPT +DP +E+ +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMI 201
LL L + G+TI+I TH + AK++ +
Sbjct: 177 LLELNDEGKTIIIVTHDPEVAKQADRV 203
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 106 bits (266), Expect = 9e-27
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKK 75
LD++ QK I LG +G GK+T + ITG + G++ + ++
Sbjct: 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL---NHFKRKCGS 132
+G++P+ LY + + E + + IYGM Q +K++ E + L+ L H +K G
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH--KKIGQ 133
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LS G ++RV LA L+HDP++LILDEPT+G+DP EI N + + + +TI+++TH +
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHIM 192
Query: 193 DE 194
E
Sbjct: 193 QE 194
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 107 bits (269), Expect = 1e-26
Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 22/234 (9%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC-------------ITGQNVLNGGNIHLSITSKKQLGF 79
+ K I+ ++G SG GK+T + I G+N++ + L +K++G
Sbjct: 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGM 75
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQ 138
+ QQ +L+P TI + + G Q+ KEKA L L+ L + R LSGG Q
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQ 135
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK 197
+RV LA L +P++L++DE S +DP+I + + + L L A +TI+ TH +DEA +
Sbjct: 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIR 195
Query: 198 -SHMIGLMRKGILLEESPPKVLL----EKYNMKSLEDVFLLLSSKQQHDRIEQR 246
I +M+ G +++ P +L +Y + + V L + I QR
Sbjct: 196 IGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAER--IAQR 247
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 104 bits (260), Expect = 2e-26
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 35/227 (15%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHL----SITSK 74
+ ++ I +L+G SGCGK+T L ITG L G NI+ + +
Sbjct: 26 LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---EYLQALLHL-------- 123
KQ+G + QQ + +P F+I Y +IYG+ L +K+KA E ++ L
Sbjct: 86 KQVGMVFQQPNPFP-FSI-----YENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK 139
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+H SLSGGQQ+RV +A L P++++LDEPTS +DP+ + +I N LL L +
Sbjct: 140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-Y 198
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TI++ TH + +A + S G L+E + K + K ED
Sbjct: 199 TIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETED 245
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 103 bits (258), Expect = 6e-26
Identities = 75/255 (29%), Positives = 117/255 (45%), Gaps = 47/255 (18%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ 55
AI +EN + K L + + + K+ + +L+G SGCGK+TLL
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 56 ITGQNVLNGGNIHLSITSKKQL----GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111
I G+ + +G +I+ +L G + Q+ + +P M Y + YG L IK
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP------MSIYDNIAYGPRLHGIK 112
Query: 112 EKAEY-------LQ--AL-------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155
+K E L+ AL LH + LSGGQQ+R+ +A L +PE+L+
Sbjct: 113 DKKELDEIVEESLKKAALWDEVKDRLHDSAL-----GLSGGQQQRLCIARALAVEPEVLL 167
Query: 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
LDEPTS +DP+ +I + L + TI+I TH + +A + S G L+E P
Sbjct: 168 LDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
Query: 215 PKVLLEKYNMKSLED 229
+ + K ED
Sbjct: 227 TEQIFTNPKEKRTED 241
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 102 bits (257), Expect = 8e-26
Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 15/203 (7%)
Query: 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------ 58
D + EN K + + V++ + + V I LLG +G GKTT I G
Sbjct: 1 DMSTLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 59 -QNVLNGGNI-HLSITSKKQLG--FMPQQISLYPEFTIDEMICYYGLIYGMSL--QQIKE 112
+ +L+ +I L + + +LG ++PQ+ S++ + T+++ I I L + KE
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKE 118
Query: 113 KAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ + L H+ H K SLSGG++RRV +A L +P+ ++LDEP +G+DP+ +I
Sbjct: 119 ELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178
Query: 172 WNHLLYLAESGRTILITTHYIDE 194
+ +L + G +LIT H + E
Sbjct: 179 QRIIKHLKDRGIGVLITDHNVRE 201
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 100 bits (252), Expect = 1e-25
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL----------SIT 72
P VL L ++ + +LLGA+G GK+TLL + G G + + +
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 73 SKKQLGFM----PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-K 127
++Q + P +D+ + + L G+S +++ + + + +
Sbjct: 65 ERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
R LSGG+++RV++A + P++L+LDEPT+G+DP E++ L L G T++I
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVI 182
Query: 188 TTHYIDEA 195
+TH +D A
Sbjct: 183 STHDVDLA 190
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 103 bits (259), Expect = 1e-25
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQLGFMPQQISLYPEFTID 93
LLG SGCGKTTLL + G + G+I L + + + Q +L+P T++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 94 EMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPE 152
E + + + + +IK + L+ L F RK LSGGQQ+RV+LA L+ P+
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEA-KKSHMIGLMRKGILL 210
+L+LDEP S +D + +++ L + E G T + TH +EA S I +MRKG +
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA 180
Query: 211 EESPPKVLLE 220
+ P+ + E
Sbjct: 181 QIGTPEEIYE 190
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 101 bits (254), Expect = 2e-25
Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I ++N K + L + ++V K I+ ++G SG GK+TL+ CI G G+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 67 IH-----LSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
+ L++ S K+L G + Q +L T+ E + I G+ +I+E+
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L L+ L LSGGQ++RV +A L ++P++L+ DE TS +DP + I
Sbjct: 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 174 HLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
L + E G TI++ TH ++ K+ + +M KG ++EE
Sbjct: 182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 101 bits (254), Expect = 2e-25
Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 28/222 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH--------L 69
VL + + + S++G+SG GK+T L CI G V+NG I+ L
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 70 SITSKKQLGFMP-------QQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALL 121
+ K QL + Q +L+ T+ E + + + G+S Q+ +E+A A +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 122 HLNHFKRK--CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
++ + LSGGQQ+RVS+A L +PE+L+ DEPTS +DP + E+ + LA
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA 199
Query: 180 ESGRTILITTHYIDEAK--KSHMIGLMRKGILLEESPPKVLL 219
E G+T+++ TH + A+ SH+I + +G + EE P+ L
Sbjct: 200 EEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGAPEQLF 240
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 104 bits (261), Expect = 2e-25
Identities = 61/207 (29%), Positives = 113/207 (54%), Gaps = 18/207 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI------HLSIT 72
++ + V++ I+ ++G SG GK+TL+ + G+ +++G +I L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 73 SKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKC 130
+K++ + Q +L P T+ E + + GL + G+ + +E+A L+ L + +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAF-GLEVQGVPKAEREERALEALELVGLEGYADKYP 162
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITT 189
LSGG Q+RV LA L +DP++L++DE S +DP+I E+ + LL L A+ +TI+ T
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 190 HYIDEAKK-SHMIGLMRKGILLEESPP 215
H +DEA + I +M+ G +++ P
Sbjct: 223 HDLDEALRIGDRIAIMKDGEIVQVGTP 249
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 103 bits (258), Expect = 4e-25
Identities = 65/208 (31%), Positives = 116/208 (55%), Gaps = 12/208 (5%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-------QNVLNGGNIHLSITSKKQ 76
+ +D + +T+ K I++LLGASGCGK+TLL + G Q +L+G ++ ++
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
+ M Q +L+P T+++ I + GL + +I + + L+H+ F KRK LS
Sbjct: 93 INMMFQSYALFPHMTVEQNIAF-GLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLS 151
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYID 193
GGQ++RV+LA +L P+LL+LDEP +D + + + ++ + E G T ++ TH +
Sbjct: 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211
Query: 194 EA-KKSHMIGLMRKGILLEESPPKVLLE 220
EA + I +M +G ++ P+ + E
Sbjct: 212 EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 99.0 bits (248), Expect = 5e-25
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 44/194 (22%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSK---K 75
VLD L ++++ I +LG +G GK+TLL + G + G I L S++ K +
Sbjct: 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELAR 73
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG 135
++ ++PQ + E L L HL R LSG
Sbjct: 74 KIAYVPQAL------------------------------ELLG-LAHLAD--RPFNELSG 100
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDE 194
G+++RV LA L +P +L+LDEPTS +D E+ L LA E G+T+++ H ++
Sbjct: 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160
Query: 195 AKK-SHMIGLMRKG 207
A + + + L++ G
Sbjct: 161 AARYADRVILLKDG 174
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 100 bits (252), Expect = 6e-25
Identities = 63/238 (26%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V+N K + L + + + + + +++G SG GK+TLL + G G I
Sbjct: 3 MIEVKNLSKTYPGGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 68 HL---SITSKK---------QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI----- 110
IT K +G + QQ +L P ++ E + L Y + + +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 111 -KEKAEYLQALLHLN---HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
++KA+ L AL + ++ +LSGGQQ+RV++A L+ P++++ DEP + +DP
Sbjct: 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181
Query: 167 IAEEIWNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEK 221
A+++ + L + E G T+++ H +D AKK +IG ++ G ++ + P L ++
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG-LKAGRIVFDGPASELTDE 238
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 99.5 bits (249), Expect = 7e-25
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 31/211 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS-------K 74
+L + + V K + +LG +G GKTTLL + G + G+I L IT +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---------EYLQALLHLNH 125
+ ++PQ ++P T++E L+ G++ + + L+ +L
Sbjct: 75 AGIAYVPQGREIFPRLTVEE-----NLLTGLAALPRRSRKIPDEIYELFPVLKEMLG--- 126
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-T 184
R+ G LSGGQQ+++++A L+ P+LL+LDEPT GI P I ++I + L G
Sbjct: 127 --RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184
Query: 185 ILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
IL+ Y+D A++ + +M +G ++
Sbjct: 185 ILLVEQYLDFARELADRYYVMERGRVVASGA 215
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 99.9 bits (250), Expect = 8e-25
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 25/215 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS-------K 74
L + + V++ I +LLG +G GKTTLL I G G I IT +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-------K 127
+ ++P+ ++P T++E + L+ + + + + L+ + L F
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENL----LLGAYARRDKEAQERDLEEVYEL--FPRLKERRN 131
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTIL 186
++ G+LSGG+Q+ +++A L+ P+LL+LDEP+ G+ P I EEI+ + L E G TIL
Sbjct: 132 QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191
Query: 187 ITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ A + + ++ G ++ LL
Sbjct: 192 LVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 100 bits (250), Expect = 9e-25
Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 44/267 (16%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI V+N K+ + VL + + V+ + +++G SG GKTTLL CI G I
Sbjct: 3 AIEVKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 68 HL---------SITSKK--------QLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQ 109
+ S++ +K +GF+ Q +L+P T+ E I +I G ++
Sbjct: 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE 120
Query: 110 IKEKAEYLQALLHL----NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165
+A L A + L + R+ LSGGQQ+RV++A L PE+++ DEPTS +DP
Sbjct: 121 ATARARELLAKVGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDP 177
Query: 166 VIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNM 224
+ E+ N + LA+ RT++I TH + A+ + M +G ++E+ P K L
Sbjct: 178 ELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF----- 232
Query: 225 KSLEDVFLLLSSKQQHDRIEQRRKSFL 251
+ Q R Q + FL
Sbjct: 233 -----------ADPQQPRTRQFLEKFL 248
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 99.3 bits (248), Expect = 2e-24
Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 27/234 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN K + + L + + + +++G SG GK+TLL CI + G+I
Sbjct: 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 69 LSITS------------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI------ 110
L T ++++G + Q +L T+ E + + L Y + + +
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 111 KEKAEYLQALLHLN----HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
++K L AL + ++R LSGGQQ+RV++A L P+L++ DEP + +DP
Sbjct: 121 EDKERALSALERVGLADKAYQR-ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179
Query: 167 IAEEIWNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKV 217
++++ ++L + E G T++I H +D AKK ++GL I+ + +P ++
Sbjct: 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 98.4 bits (246), Expect = 2e-24
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 14/195 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
IR EN K + L + + K L G SG GK+TLL I G+ G I
Sbjct: 2 IRFENVSKAYPG-GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 68 ----HLSITSKKQLGFMPQQIS-------LYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
LS +++ F+ +QI L P+ T+ E + + G ++I+ +
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 117 LQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+ L+ L H R S LSGG+Q+RV++A +++ P +L+ DEPT +DP ++ EI
Sbjct: 121 VLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180
Query: 176 LYLAESGRTILITTH 190
+ G T+L+ TH
Sbjct: 181 EEINRLGTTVLMATH 195
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 98.8 bits (247), Expect = 3e-24
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----Q 76
++ + + V+ I L+G +G GKTTL + ITG + G + IT +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78
Query: 77 LG----FMPQQISLYPEFTIDE-----MICYYGLI-------YGMSLQQIKEKAEYLQAL 120
LG F Q L+P T+ E GL ++ +E+A L
Sbjct: 79 LGIARTF--QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
+ L R G+LS GQQRR+ +A L P+LL+LDEP +G++P EE+ + L
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 179 AESGRTILITTH 190
G TIL+ H
Sbjct: 197 DRGGVTILLIEH 208
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 98.7 bits (246), Expect = 3e-24
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 45/237 (18%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSITS 73
L+ + + + I +L+G SG GK+TLL I TG V NG NI+ T
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 74 ----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL--------- 120
+K++G + QQ + +P +I Y ++YG+ L+ IK+K +A+
Sbjct: 81 TVDLRKEIGMVFQQPNPFP-MSI-----YENVVYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 121 -------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
LH + LSGGQQ+RV +A L P++++LDEPTS +DP+ A +I
Sbjct: 135 WDEVKDRLHDSAL-----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 174 HLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
LL L + T+L+ T + +A + S G G L+E + K + K ED
Sbjct: 190 TLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETED 245
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 102 bits (257), Expect = 4e-24
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN R+ P VL+ L + + +++G SG GK+TLL + G G I
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 69 LSITS---------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA----- 114
L ++Q+G++ Q L+ +I E I + ++I E A
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNPEA--TDEEIIEAAQLAGA 588
Query: 115 -EYLQALLHLNHFK--RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
E+++ L +LSGGQ++R++LA LL P++L+LDE TS +DP I
Sbjct: 589 HEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+LL + + GRT++I H + + + I ++ +G ++E+ + LL +
Sbjct: 649 LQNLLQILQ-GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 97.5 bits (243), Expect = 4e-24
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI-----HLSITSKKQLGF 79
++ + +TV K+++Y LLG +G GK+TLL ITG G I + ++G
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL----NHFKRKCGSLSG 135
+ + LY T E + + + G+ +I E +L++ N K+K S
Sbjct: 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDE-------VLNIVDLTNTGKKKAKQFSL 127
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
G ++R+ +AI LL+ P+LLILDEPT+G+DP+ +E+ + E G T+++++H + E
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV 187
Query: 196 KK-SHMIGLMRKGIL 209
++ + IG++ +G+L
Sbjct: 188 QQLADHIGIISEGVL 202
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 96.5 bits (241), Expect = 1e-23
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 29/225 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
+ +N R+ P VL + + + +L+G SG GK+TL++ I G+ +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 62 LNGGNIH-LSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ ++ S ++Q+G + Q + L+ + T+ E I Y G G + ++++E A A
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIAY-GR-PGATREEVEEAAR--AA 115
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
H F + LSGGQ++R+++A LL DP +LILDE TS +D
Sbjct: 116 NAH--EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
+ L L + RT + H + + + I ++ G ++E
Sbjct: 174 ERLVQAALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVER 217
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 98.6 bits (246), Expect = 1e-23
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
IR+ N KR + LD + + ++ + +LLG SG GK+TLL I G + G I
Sbjct: 3 IRINNVKKRFGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 69 LS----------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQQIKEKAE 115
L+ +++GF+ Q +L+P T+ + I + GL S +I+ + E
Sbjct: 61 LNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-GLKVRKERPSEAEIRARVE 119
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L L+ L R LSGGQ++RV+LA L +P++L+LDEP +D + +E+
Sbjct: 120 ELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179
Query: 175 LLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215
L L G T + TH +EA + + + ++ +G + + PP
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 100 bits (251), Expect = 1e-23
Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 29/236 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I +EN R+ P L L +T++ + +L+GASG GK+TLL+ + G G I
Sbjct: 321 ISLENLSFRYPDGKP-ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379
Query: 68 -------HLSITSK-KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
LS + KQ+ ++ Q L+ TI E I S ++I +
Sbjct: 380 VNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR--PDASDEEIIAALDQAG- 435
Query: 120 LLHLNHFKRKCG-----------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
L F K LSGGQ +R++LA LL LL+LDEPT+ +D
Sbjct: 436 ---LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492
Query: 169 EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
+ I L LA+ +T+L+ TH +++A + I ++ G L+E+ + L EK +
Sbjct: 493 QIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGL 547
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 96.8 bits (241), Expect = 1e-23
Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 43/233 (18%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L + +++ K+ + +L+G SGCGK+TLL C ITG + NG NI S
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQAL----- 120
+ ++++G + Q+ + +P+ +I E + Y I+G +L I EK+ AL
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK 140
Query: 121 --LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
LH + SLSGGQQ+R+ +A TL +PE++++DEP S +DP+ +I + + L
Sbjct: 141 DRLHDSAL-----SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLE--------ESPPKVLLEKY 222
+ T++I TH + +A + S G M G L+E E+P + L E Y
Sbjct: 196 KKE-YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENY 247
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 95.9 bits (239), Expect = 2e-23
Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 17/220 (7%)
Query: 9 IRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
++ EN KR+ VL + +++ K I +++G+SG GK+TLL + +G+
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 60 NVLNGGNIH-LSITSK-----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113
+ NG ++ LS + K+LGF+ Q L P+FT E + LI S+++ KE+
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121
Query: 114 AEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
A + + L H + LSGG+++RV++A L++ P L++ DEPT +D A+ I+
Sbjct: 122 AYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 173 NHLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKGILLE 211
+ +L L E + L+ TH ++ AKK + M+ G L
Sbjct: 182 DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 100 bits (250), Expect = 2e-23
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 55/221 (24%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +EN + + +L+ + +T+ L+G +G GK+TLL + G+ + G +
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV- 60
Query: 69 LSITSKKQLGFMPQQISLYPEFTI-DEMIC-----------YYGLIYGMSLQQIKEKAEY 116
+ ++G++ Q+ L PE T+ D +I ++ + AE
Sbjct: 61 -TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAEL 119
Query: 117 LQAL------------------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158
L L R SLSGG +RRV+LA LL +P+LL+LDE
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179
Query: 159 PTSGIDPVIAEEIWNHL-------L--YLAESGRTILITTH 190
PT NHL L YL T+++ +H
Sbjct: 180 PT------------NHLDLESIEWLEDYLKRYPGTVIVVSH 208
Score = 87.3 bits (217), Expect = 4e-19
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ EN K +L L + + +++G +G GK+TLL + G+ G +
Sbjct: 322 LEFENVSK-GYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 69 LSITSKKQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL-QALLHLNHF 126
+ ++G+ Q L P+ T+ E + +E YL +
Sbjct: 381 --VGETVKIGYFDQHRDELDPDKTVLEELSEG-----FPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
++ G LSGG++ R+ LA LL P LL+LDEPT NHL
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT------------NHL 470
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 97.7 bits (244), Expect = 3e-23
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 22/226 (9%)
Query: 9 IRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TG 58
I +EN K LD + + + K I+ ++G SG GK+TLL I +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 59 QNVLNGGNIHLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111
++G ++ + S+ +L G + Q +L T+ E + + + G+ +IK
Sbjct: 62 SVFVDGQDL--TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK 119
Query: 112 EKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
++ L L+ L+ R LSGGQ++RV++A L ++P++L+ DE TS +DP +
Sbjct: 120 QRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 171 IWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
I L + E G TI++ TH ++ K+ + ++ +G L+EE
Sbjct: 180 ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 94.6 bits (236), Expect = 3e-23
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-------VLNGGNIHLSITSKKQL 77
+LD L + + I +L G +G GKTTL + G +LNG I K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-I 73
Query: 78 GFMPQQIS--LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLS 134
G++ Q + L+ + +E GL L E+AE + L L K R SLS
Sbjct: 74 GYVMQDVDYQLFTDSVREE--LLLGL---KELDAGNEQAETVLKDLDLYALKERHPLSLS 128
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
GGQ++R+++A LL +LLI DEPTSG+D E + + LA G+ +++ TH
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 95.0 bits (236), Expect = 6e-23
Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 12/182 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI----------HLSITSK 74
V++ + +TV I LLG +G GKTT + G + GNI L ++
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 75 KQLGFMPQQISLYPEFTI-DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-S 132
+ +G++PQ+ S++ ++ D ++ + +S +Q +++A L H+ H + G S
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LSGG++RRV +A L +P+ ++LDEP +G+DP+ +I + +L +SG +LIT H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 193 DE 194
E
Sbjct: 198 RE 199
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 95.3 bits (238), Expect = 6e-23
Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 36/249 (14%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ 55
AI V + + K L + + + K+ + +L+G SGCGK+TLL C
Sbjct: 7 AIEVRDLNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 56 ITGQNVLNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQ 108
+ G+ +L+G NI+ ++++G + Q+ + +P +I + + Y ++G+ L
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELD 123
Query: 109 QIKEKAEYLQAL-------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
+I E + AL LH + LSGGQQ+R+ +A L PE+L++DEPTS
Sbjct: 124 EIVESSLKKAALWDEVKDRLHKSAL-----GLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+DP+ +I + L + TI+I TH + +A + S G L+E P +
Sbjct: 179 ALDPISTLKIEELITELKKK-YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237
Query: 221 KYNMKSLED 229
K ED
Sbjct: 238 NPKHKRTED 246
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 94.1 bits (234), Expect = 1e-22
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 12/209 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I + N KR S LD + + V ++ +LLG SG GK+TLL I +G+
Sbjct: 1 IEIANISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 62 LNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
LNG + +++GF+ Q +L+ T+ + I + I +IK + E L L+
Sbjct: 59 LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELV 118
Query: 122 HLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI--WNHLLYL 178
L R LSGGQ++RV+LA L +P++L+LDEP +D + +E+ W L+
Sbjct: 119 QLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKG 207
T+ +T + + + I +M G
Sbjct: 179 EVHVTTVFVTHDQEEAMEVADRIVVMSNG 207
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 97.2 bits (243), Expect = 1e-22
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ + KR + D + ++V+K I++LLG +G GK+TL+ + G + G I
Sbjct: 4 ALEMRGITKRFPGVV--ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 68 -----HLSITSKKQ-----LGFMPQQISLYPEFTIDEMICYYGLIYGM--------SLQQ 109
+ I S + +G + Q L P T+ E I I G+ +Q
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI-----ILGLEPSKGGLIDRRQ 116
Query: 110 IKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+ + + L L K LS G+Q+RV + L LLILDEPT+ + P A
Sbjct: 117 ARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 169 EEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207
+E++ L LA G+TI+ TH + E + + ++R+G
Sbjct: 177 DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
Score = 61.8 bits (151), Expect = 1e-10
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 44/225 (19%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---------SITSKKQ 76
+ + V+ I + G +G G++ L+ I+G G I L S +++
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMS------LQQIKEKAEYLQALLHLN------ 124
LG ++ PE D +GL+ +S L + +K L
Sbjct: 334 LG-----LAYVPE---DRH--GHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA 383
Query: 125 -----HFK-RKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
F R SLSGG Q+++ LA L P+LLI +PT G+D E I
Sbjct: 384 RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIH 443
Query: 173 NHLLYLAESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPK 216
LL L ++G+ +L+ + +DE + S I ++ +G ++ PP+
Sbjct: 444 ERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 95.2 bits (237), Expect = 2e-22
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 39/226 (17%)
Query: 9 IRVENAYKRHSSKLPY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I+V+N K + KLP LD + + + + +++G +G GKTT + + + + G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 66 NIH-----------------------LSITSKKQLGFMPQ---------QISLYPEF--T 91
I + T K++ + + Q + Y F T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 92 IDEMICYYGLIYGMSLQQIKEKA-EYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
I++ I + + G+S ++ K++A +Y++ + L ++ +R LSGGQ+RRV+LA L
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
+P+ L+ DEPT+G+DP +EI L + G+TI++ TH +D
Sbjct: 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 95.6 bits (238), Expect = 2e-22
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-------------ITSK 74
T+ + ++ G SG GKTTL+ I G + G I L+ K
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---EYLQALLHLNHF-KRKC 130
+++G++ Q+ L+P ++ L YGM + E+ E + LL + H R
Sbjct: 75 RRIGYVFQEARLFPHLSVRG-----NLRYGMKRARPSERRISFERVIELLGIGHLLGRLP 129
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITT 189
G LSGG+++RV++ LL P LL++DEP + +D EI +L L AE G IL +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189
Query: 190 HYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLE 228
H + E + + + ++ G + P + ++ L
Sbjct: 190 HSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLA 229
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 97.0 bits (242), Expect = 2e-22
Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ + N + + L +T+ + ++LG SG GK+TLL + G G+I
Sbjct: 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYY----GLIYGMSLQQI---KEKA--EYLQ 118
L+ I+ E + E I L G + A E L
Sbjct: 396 TLNGVE----------IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445
Query: 119 ALLH---LNHFKRKCGS------------LSGGQQRRVSLAITLLHDPELLILDEPTSGI 163
A L L LSGG++RR++LA LLHD L +LDEPT G+
Sbjct: 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505
Query: 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
DP+ ++ L AE G+T+L+ TH + ++ I ++ G ++EE LL
Sbjct: 506 DPITERQVLALLFEHAE-GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 93.2 bits (232), Expect = 2e-22
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQL-------GFMPQQIS 85
LLG SG GK++LL + + G +++ S K + G + QQ +
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92
Query: 86 LYPEFT-IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSL 143
L+P T +I + G+S Q +AE L L L + R LSGGQQ+RV++
Sbjct: 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMI 201
A L+ +P++L+ DEPT+ +DP I +I + + LAE+G T +I TH ++ A+K S ++
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212
Query: 202 GLMRKGILLE 211
M G ++E
Sbjct: 213 -YMENGHIVE 221
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 94.6 bits (236), Expect = 2e-22
Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 30/225 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLL-----------SCITGQNVL-NGGNIHLSIT 72
+D + ++K I ++G SG GK+ L + I G +L +G ++ LS++
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDL-LSLS 78
Query: 73 SK-------KQLGFMPQ--QISLYPEFTIDEMIC--YYGLIYGMSLQQIKEKAEYLQALL 121
K K++ + Q SL P TI + I G+S ++ KE+A L L+
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELV 138
Query: 122 HLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
+ +R+ S LSGG ++RV +A+ L +P+LLI DEPT+ +D + +I + L
Sbjct: 139 GIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE 198
Query: 178 LA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
L E G +++ TH + + + + +M G ++EE P + + +
Sbjct: 199 LQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 91.6 bits (228), Expect = 8e-22
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 20/216 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+I V N KR + LD + + + + +LLG SG GKTTLL I G + G I
Sbjct: 2 SIEVRNVSKRFGDFV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 68 --------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL-----IYGMSLQQIKEKA 114
+ + ++ +GF+ Q +L+ T+ + + + GL +I+ K
Sbjct: 60 LFGGEDATDVPV-QERNVGFVFQHYALFRHMTVFDNVAF-GLRVKPRSERPPEAEIRAKV 117
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L L+ L+ R LSGGQ++RV+LA L +P++L+LDEP +D + +E+
Sbjct: 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177
Query: 174 HLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKG 207
L L E T + TH +EA + + + +M KG
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 90.8 bits (225), Expect = 2e-21
Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 25/228 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIH---L 69
+ + M + K+ I +++G SGCGKTTLL I G+ G +I+ L
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 70 SITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLH-- 122
+T +K++G + Q+ + +P +I + + + I+G+ L +I E++ AL
Sbjct: 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV 136
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ + LSGGQQ+R+ +A L +PE+++LDEPTS +DP+ + I L L+E+
Sbjct: 137 KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN- 195
Query: 183 RTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TI+I TH I +A + + I M +G L+E P + ++E+ K E+
Sbjct: 196 YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEE 243
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 90.3 bits (224), Expect = 3e-21
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 26/205 (12%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIHL--SITSK 74
+L + + + IY+++G SG GK+TL+ I G +++G +I I +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-KAEYLQALLHLN--HFKRKCG 131
+++G + QQ L+ E T+ + I YG L+ K EY +++ LN + R
Sbjct: 77 RKIGMVFQQPHLF-EGTVKDNI-----EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK 130
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH 190
+LSGG+ +RVS+A TL ++PE+L+LDEPTS +DP E I ++ L T++ TH
Sbjct: 131 NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190
Query: 191 YIDEAKKSHMIG----LMRKGILLE 211
+++AK+ IG + KGIL+E
Sbjct: 191 NMEQAKR---IGDYTAFLNKGILVE 212
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 90.8 bits (225), Expect = 3e-21
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 37/244 (15%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L+ + + + ++ I +L+G SGCGK+T L C I G+ +L+G NI+
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLH--L 123
+ +K++G + Q+ + +P +I + + Y I+G+ L +I E A AL
Sbjct: 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ K+ LSGGQQ+R+ +A T+ P+++++DEPTS +DP+ +I + ++ L +
Sbjct: 139 DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE-Y 197
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDR 242
TI+I TH + +A + S G L+E E +FL K+ D
Sbjct: 198 TIVIVTHNMQQASRVSDYTAFFLMGDLIE------------FNKTEKIFLEPQKKETEDY 245
Query: 243 IEQR 246
I R
Sbjct: 246 ISGR 249
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 92.5 bits (230), Expect = 3e-21
Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---------GGNIHLSITSKKQLGFMP 81
+ +++ I L+G SG GK+TLL + G N ++ G++ ++ L +
Sbjct: 45 LDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 82 --------QQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCG 131
QQ +L P T++E + + GL + GM + +++ + L+ L + RK G
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAF-GLEMQGMPKAERRKRVDEQLELVGLAQWADRKPG 163
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTH 190
LSGG Q+RV LA + +L++DEP S +DP+I ++ + LL L ++ +TI+ +H
Sbjct: 164 ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSH 223
Query: 191 YIDEAKK-SHMIGLMRKGILLEESPPK 216
+DEA K + I +M G +++ P+
Sbjct: 224 DLDEALKIGNRIAIMEGGRIIQHGTPE 250
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 89.5 bits (222), Expect = 3e-21
Identities = 56/177 (31%), Positives = 103/177 (58%), Gaps = 11/177 (6%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSKKQLGFMPQQ 83
+T + I +++G SG GK+TLL+ I +G+ ++NG ++ + + + + + Q+
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-EYLQALLHLNHF-KRKCGSLSGGQQRRV 141
+L+ T+++ + GL G+ L +A E A + L KR G LSGG+++RV
Sbjct: 79 NNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK 197
+LA L+ D +L+LDEP + +DP + E+ + +L L AE+ T+L+ TH ++AK+
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 92.3 bits (230), Expect = 3e-21
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ + K K V+ L +T+ +LLG SGCGKTT+L I G + G
Sbjct: 12 SPLVELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69
Query: 66 NIHLS---ITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-----QIKEK 113
I L IT + + + Q +L+P T+ E + + G+ +Q +I +
Sbjct: 70 RIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAF-----GLRMQKTPAAEITPR 124
Query: 114 AEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
++ L F +RK LSGGQQ+RV++A +++ P++L+LDE S +D + +++
Sbjct: 125 VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 184
Query: 173 NHLLYLA-ESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLE 220
N L L + G T + TH +EA S I +MR G + ++ P+ + E
Sbjct: 185 NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 92.0 bits (228), Expect = 4e-21
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 15/225 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI---------TGQ 59
IR+++ + + VLD L + ++ + +L+G SGCGKTTLL I TG+
Sbjct: 6 IRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR 63
Query: 60 NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-AEYLQ 118
+ ++ + K+ L + Q +L+P +++ + + M I E+ A+ L+
Sbjct: 64 IAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALK 123
Query: 119 ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ + LSGG Q+R+++A + +P++L+LDEP S +D I + + L
Sbjct: 124 LVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183
Query: 179 AES--GRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLE 220
E TIL TH D+A + G+M+ G L P+ L +
Sbjct: 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 90.9 bits (226), Expect = 6e-21
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 18/232 (7%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70
+ + + R + V D + + K I LGA+G GK+T L +TG + G +
Sbjct: 26 LNHFFHRKERSIEAVQD-ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG--KVR 82
Query: 71 ITSK----------KQLGF-MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ K + +G M Q++ L+ + + + LIY + + E+ ++L
Sbjct: 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTE 142
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-Y 177
+L L F K LS GQ+ R LA LLH P++L LDEPT G+D I L Y
Sbjct: 143 ILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202
Query: 178 LAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKY-NMKSL 227
E T+L+TTH D+ A + L+ +G L+ + L E++ K
Sbjct: 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 91.5 bits (227), Expect = 6e-21
Identities = 73/273 (26%), Positives = 130/273 (47%), Gaps = 33/273 (12%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
I++ N K +K L+ + + V IY ++GASG GK+TL+ C+ +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 60 NVLNGGNI-HLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
+++G ++ LS +++Q+G + Q +L T+ + + +IK K
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV 121
Query: 115 EYLQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L AL+ L S LSGGQ++RV++A L +P++L+ DE TS +DP + I
Sbjct: 122 TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSI-- 179
Query: 174 HLLYLAESGR----TILITTHYIDEAKK-SHMIGLMRKGILLEE-------SPPKVLLEK 221
L L E R TIL+ TH +D K+ + ++ G L+E+ S PK L +
Sbjct: 180 -LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238
Query: 222 YNMKSLEDVFLLLSSKQQHDRIEQRRKSFLWPI 254
++S + + + +R++ + P+
Sbjct: 239 KFIRSTLHLSI---PEDYQERLQATPFADSVPM 268
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 89.1 bits (221), Expect = 9e-21
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 20/190 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---------------KKQLGFMPQQIS 85
LLG SG GK++LL + + G ++++ ++ +G + QQ +
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 86 LYPEFTIDE-MICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSL 143
L+P T+ E +I + G+S Q +AE L L L + R LSGGQQ+RV++
Sbjct: 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMI 201
A L+ +P++L+ DEPT+ +DP I +I + + LAE+G T +I TH ++ A+K S ++
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVV 212
Query: 202 GLMRKGILLE 211
M G ++E
Sbjct: 213 -YMENGHIVE 221
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 92.0 bits (229), Expect = 1e-20
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-KK 75
L + TV +L+G SG GK+TLL+ + G +NG + S +
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA------EYLQALLHLNHFKRK 129
Q+ ++PQ L+ TI E I S +I+E E++ AL
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLARP--DASDAEIREALERAGLDEFVAALPQGLD--TP 451
Query: 130 CGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ +R++LA L D LL+LDEPT+ +D E+ L LA+ GRT+
Sbjct: 452 IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTV 510
Query: 186 LITTH 190
L+ TH
Sbjct: 511 LLVTH 515
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 88.2 bits (219), Expect = 2e-20
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 11/181 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQ 76
L + T++K I +G +G GKTT L ++G G + + ++
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95
Query: 77 LGF-MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
+G Q+ L+ + + + IY + + K++ + L LL L LS
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLS 155
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTHYID 193
GQ+ R +A LLH+PE+L LDEPT G+D V E I N L Y E G T+L+T+HY+
Sbjct: 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215
Query: 194 E 194
+
Sbjct: 216 D 216
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 88.5 bits (220), Expect = 2e-20
Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSK---K 75
+L+ L +++ I +L+G +GCGK+TLL C G + L ++S+ +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 76 QLGFMPQQISLYPE-FTIDEMICY----YGLIYGMSLQQIKEKAEYLQALLHLNHF-KRK 129
+L +PQ L PE T+ E++ Y + ++G + + +NH R+
Sbjct: 77 RLALLPQHH-LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR 135
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
LSGGQ++R LA+ L D +++LDEPT+ +D E+ + L G+T++
Sbjct: 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL 195
Query: 190 HYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
H +++A + H++ L ++ + +P +V+ L VF
Sbjct: 196 HDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGL----LRTVF 235
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 86.9 bits (216), Expect = 3e-20
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 22/215 (10%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I N K + + L + + ++K L G SG GKTTLL + G + G +
Sbjct: 2 IEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 69 -----LSITSKKQLGFMPQQIS-------LYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
++ +QL + ++I L P+ T+ E + + G ++I+ +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 117 LQALLHLNHFKRKC--GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ L H K LSGG+Q+RV++A +++ P LL+ DEPT +DP ++E I +
Sbjct: 121 ALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209
L L + G T+++ TH ++ + ++
Sbjct: 180 LKRLNKRGTTVIVATH------DLSLVDRVAHRVI 208
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 88.5 bits (220), Expect = 3e-20
Identities = 64/222 (28%), Positives = 122/222 (54%), Gaps = 33/222 (14%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG------GNIHLS---ITSK---KQLGF 79
++ + +++G +G GK+TLL Q+ LNG G + + IT+ K+L
Sbjct: 29 SIPSGSYVAIIGHTGSGKSTLL-----QH-LNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 80 MPQQISL---YPE---F--TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRK 129
+ +++ + +PE F T+++ IC+ + +G+S + K+KA + L+ L R
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS 142
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILIT 188
LSGGQ RRV++A L +PE+L+LDEPT+G+DP +E+ L E G T ++
Sbjct: 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV 202
Query: 189 THYIDEAKK--SHMIGLMRKG-ILLEESPPKVLLEKYNMKSL 227
TH +++A + ++ +M KG + L+ +P ++ + ++++
Sbjct: 203 THSMEDAARYADQIV-VMHKGTVFLQGTPREIFADPDELEAI 243
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 86.6 bits (215), Expect = 4e-20
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 19/201 (9%)
Query: 22 LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSK 74
LP D +TV I ++LG SG GK+TLL+ I +G+ ++NG + S ++
Sbjct: 14 LPMRFD---LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE 70
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI-KEKAEYLQALLHLNHF-KRKCGS 132
+ + + Q+ +L+ T+ + I GL G+ L +EK E A + L F KR G
Sbjct: 71 RPVSMLFQENNLFAHLTVAQNIGL-GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE 129
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHY 191
LSGGQ++RV+LA L+ + +L+LDEP S +DP + E+ + L E T+L+ TH+
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 192 IDEAKKSHMIGLMRKGILLEE 212
++A + + + + L+
Sbjct: 190 PEDAAR-----IADRVVFLDN 205
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 87.2 bits (216), Expect = 5e-20
Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 33/198 (16%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLSITS 73
L + + + + +L+G SGCGK+TLL C ITG+ ++G +I+ +I
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 74 KK---QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-------EYLQALLHL 123
++G + Q+ + +P M Y + YG+ Q IK+K L+
Sbjct: 79 ADLRIKVGMVFQKPNPFP------MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 124 NHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
+ K + S LSGGQQ+R+ +A T+ +P+++++DEPTS +DP+ +I L+
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI-EELMEEL 191
Query: 180 ESGRTILITTHYIDEAKK 197
+ TI+I TH + +A++
Sbjct: 192 KKNYTIVIVTHSMQQARR 209
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 86.8 bits (215), Expect = 5e-20
Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 15/204 (7%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSK- 74
VL + ++ + + +++G+SG GK+TLL + G + G++ LS +K
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82
Query: 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRK 129
++LGF+ Q L P+FT E + LI +I +A + A + L H +
Sbjct: 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR 142
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILIT 188
LSGG+++RV++A L+++P L++ DEPT +D A+ I+ L L G L+
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202
Query: 189 THYIDEAKKSHMIGLMRKGILLEE 212
TH + AK+ MR G L E
Sbjct: 203 THDLQLAKRMSRQLEMRDGRLTAE 226
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 86.7 bits (215), Expect = 7e-20
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNV 61
C + V + + K L+ + +T+ + +LG SGCGKTTLL+ I G +
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 62 LNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
+ + ++ G + Q +L P + + + + + G+ Q +E A + AL+
Sbjct: 62 IQLNGRRIEGPGAER-GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 122 HLNHFKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
L + K LSGG ++RV +A L +P+LL+LDEP +D + E++ LL L
Sbjct: 121 GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 180 ESGRTILITTHYIDEA 195
E+G+ +L+ TH I+EA
Sbjct: 181 ETGKQVLLITHDIEEA 196
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 85.7 bits (213), Expect = 1e-19
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 30/234 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
I EN + K P VL + +++ +++G +G GKTTL++ + GQ +
Sbjct: 3 IEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61
Query: 62 LNGGNIH-LSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I +S S + +G + Q L+ TI E I G +E E +
Sbjct: 62 IDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENI-----RLGRPNATDEEVIEAAKE 115
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+ F K G+LS G+++ +++A +L DP++LILDE TS ID
Sbjct: 116 A-GAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ I L L + GRT +I H + K + I ++ G ++EE LL K
Sbjct: 175 EKLIQEALEKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 86.6 bits (214), Expect = 1e-19
Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 26/243 (10%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------I 56
I+VEN + K L + M + K+++ +L+G SGCGK+T + C I
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 57 TGQNVLNGGNIHLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS---LQQ 109
G+ + G +I+ + +K +G + Q+ + +P +I + + Y I+G + L
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDG 129
Query: 110 IKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+ E A AL + K SLSGGQQ+R+ +A TL P++++ DEPTS +DP+
Sbjct: 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKS 226
I + ++ L + TI+I TH + +A + S G G L+E + + KS
Sbjct: 190 TARIEDLIMNLKKD-YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKS 248
Query: 227 LED 229
ED
Sbjct: 249 TED 251
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 86.6 bits (215), Expect = 1e-19
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 53/239 (22%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS-- 70
L + M + K+ + + +G SGCGK+TLL C I G+ L+G NI+
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-------- 120
++++G + Q+ + +P+ +I Y ++YG+ LQ I + +A+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPK-SI-----YENVVYGLRLQGINNRRVLDEAVERSLRGAA 153
Query: 121 --------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
LH N F LSGGQQ+R+ +A + +PE+L+LDEPTS +DP I+
Sbjct: 154 LWDEVKDRLHENAF-----GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP-ISTLKI 207
Query: 173 NHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE--------ESPPKVLLEKY 222
L+ +S TI+I TH + +A + S M G L+E SP K E Y
Sbjct: 208 EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDY 266
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 86.2 bits (213), Expect = 1e-19
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 35/217 (16%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L + + ++ + +L+G SGCGK+T L C ITG+ G NI+ S
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-------AEYL-QALL 121
+ +K++G + QQ + +P F++ Y + YG+ + +K+K E L QA +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSV-----YDNVAYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 122 ---HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
++ R + SGGQQ+R+ +A L P++++LDEPTS +DP+ + EI L+ L
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
T ++ TH + +A + S + G L+E P
Sbjct: 194 KHQ-YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 85.3 bits (211), Expect = 2e-19
Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMP 81
L ++ + + + I +L+GA+G GKTTLL + G G I IT + M
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 82 QQISLYPE-------FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKR--KCGS 132
+ +++ PE T++E + G Q +E+ +++ L H +R + G+
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRAGT 137
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
+SGG+Q+ +++ L+ P LL+LDEP+ G+ P+I ++I++ + L E G TI +
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLE 220
++A K L +G +LE V+LE
Sbjct: 198 NQALK-----LADRGYVLENG--HVVLE 218
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 86.3 bits (214), Expect = 2e-19
Identities = 76/245 (31%), Positives = 134/245 (54%), Gaps = 24/245 (9%)
Query: 9 IRVENAYKRHSSKLPY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I++EN + P+ LD + + ++ L+G +G GK+TL+ + G G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 66 NIH---LSITSKK-QLGFMPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQIKEK 113
I + IT KK +L + +++ L YPE+ TI++ I + + G+S ++I+ +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 114 AEYLQALLHLNHFKRKCGS---LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ ++ L++ K S LSGGQ+RRV++A + +P++LILDEPT+G+DP +E
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182
Query: 171 IWNHLLYL-AESGRTILITTHYI-DEAKKSHMIGLMRKG-ILLEESPPKVLLEKYNMKSL 227
I N + L E TI++ +H + D AK + I +M KG L+ +P +V E +++L
Sbjct: 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE---VETL 239
Query: 228 EDVFL 232
E + L
Sbjct: 240 ESIGL 244
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 85.1 bits (211), Expect = 2e-19
Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 15/198 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+IR N Y H S VL + + + I L G SG GKTTLL+ I G + G++
Sbjct: 3 SIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL 62
Query: 68 -----HLSITSKKQL-------GFMPQQISLYPEFTIDE-MICYYGLIYGMSLQQIKEKA 114
L S+K+L G++ Q +L T + + L +S Q+ +E+A
Sbjct: 63 KVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA 122
Query: 115 -EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L+A+ +H +LSGGQ++RV++A L+H P+L++ DEPT+ +D ++
Sbjct: 123 RAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 174 HLLYLA-ESGRTILITTH 190
+ LA E G TILI TH
Sbjct: 183 LMQKLAREQGCTILIVTH 200
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 88.6 bits (220), Expect = 2e-19
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 33/173 (19%)
Query: 41 LLGASGCGKTTLLSCIT-------GQNVLNGGNIHLSITS--KKQLGFMPQQISLY---- 87
+LG SG GK+TLL+ + G+ L+G + ++++ Q L+
Sbjct: 366 ILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTV 425
Query: 88 --------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG--SLSGGQ 137
P+ T +E+ +L+++ A++L+AL G LSGG+
Sbjct: 426 RENLRLARPDATDEEL--------WAALERVG-LADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
++R++LA LL D +L+LDEPT +D A+E+ L A SGRT+++ TH
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELL-EDLLAALSGRTVVLITH 528
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 85.9 bits (213), Expect = 2e-19
Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 20/209 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNVLNGGNIHLS----ITS 73
L + +K + +LLG +G GK+TL L +G+ ++ G I +
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 74 KKQLGFMPQ----QISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-EYLQALLHLNHFKR 128
+K +G + Q Q+ P T++E + + L G+S ++++++ E L+A+ +
Sbjct: 77 RKTVGIVFQNPDDQL-FAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK 133
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGGQ++RV++A L PE+++LDEPTSG+DP+ A +I L L + G TI+I+
Sbjct: 134 PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIS 193
Query: 189 THYIDEAKK-SHMIGLMRKGILLEESPPK 216
TH +D + + +M G +++E PK
Sbjct: 194 THDVDLVPVYADKVYVMSDGKIIKEGTPK 222
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 85.5 bits (212), Expect = 2e-19
Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK----QLGFM 80
L+ + +T++ + +LG SGCGKTTLL+ I G G+I L + + G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 81 PQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQ 138
Q L P + + + + GL + G+ Q E A + + L KR LSGGQ+
Sbjct: 76 FQNEGLLPWRNVQDNVAF-GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQR 134
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEA 195
+RV +A L +P+LL+LDEP +D E++ LL L E+G+ +L+ TH I+EA
Sbjct: 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 84.5 bits (209), Expect = 2e-19
Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSKKQLGFMPQQ 83
+ V I +++G SG GK+TLL+ I +G +N + ++ + + Q+
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQI-KEKAEYLQALLHL-NHFKRKCGSLSGGQQRRV 141
+L+ T+ + I GL G+ L +EK + + ++ R LSGGQ++RV
Sbjct: 79 NNLFAHLTVRQNIGL-GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKKS 198
+LA L+ +L+LDEP S +DP++ EE+ + L E RT+L+ TH++ +A+
Sbjct: 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI 195
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 84.1 bits (209), Expect = 2e-19
Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 9 IRVENA---YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I VE+A + + + L + + V K + +++G G GK++LLS + G+ G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 66 NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
++ + + ++ Q+ + TI E I + G + ++ Y + +
Sbjct: 61 SVSVP----GSIAYVSQEPWIQNG-TIRENILF-GKPF--------DEERYEKVI----- 101
Query: 126 FKRKCG---------------------SLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ C +LSGGQ++R+SLA + D ++ +LD+P S +D
Sbjct: 102 --KACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159
Query: 165 PVIAEEIWNHLL--YLAESGRTILITTHYIDEAKKSHMIGLMRKG 207
+ I+ + + L +T ++ TH + + I ++ G
Sbjct: 160 AHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPHADQIVVLDNG 203
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 88.4 bits (219), Expect = 2e-19
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 28/175 (16%)
Query: 38 IYSLLGASGCGKTTLL---------SCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88
I ++LG SG GK+TLL + TG + N I K+ GF+ Q LYP
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL--KRTGFVTQDDILYP 153
Query: 89 EFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNHFKRKCGS----------LSG 135
T+ E + + L+ ++ Q+ AE + + L L KC + +SG
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT----KCENTIIGNSFIRGISG 209
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
G+++RVS+A +L +P LLILDEPTSG+D A + L LA+ G+TI+ + H
Sbjct: 210 GERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 86.6 bits (215), Expect = 3e-19
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 38 IYSLLGASGCGKTTLLSCITG-------QNVLNG-------GNIHLSITSKKQLGFMPQQ 83
I +L G SG GKT+L++ I G + LNG I L K+++G++ Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVFQD 84
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVS 142
L+P +T+ + Y G+ M + + + L ALL + H R G+LSGG+++RV+
Sbjct: 85 ARLFPHYTVRGNLRY-GMWKSM-----RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVA 138
Query: 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT-ILITTHYIDE-AKKSHM 200
+ LL PELL++DEP + +D EI +L L + IL +H +DE + +
Sbjct: 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198
Query: 201 IGLMRKGILLEESP 214
+ ++ G + P
Sbjct: 199 VVVLENGKVKASGP 212
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 85.4 bits (211), Expect = 4e-19
Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 22/229 (9%)
Query: 9 IRVENAYKRHSSKLPY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TG 58
I ++N ++ K P+ L+ +T +K+ + ++G +G GK+T++ TG
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 59 QNVLNGGNIHLSITSKKQLGFMPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQI 110
Q ++ I ++ K++ + ++I L +PE+ TI++ I + + G + Q+
Sbjct: 67 QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEA 126
Query: 111 KEKAEYLQALLHL--NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+K L L+ L ++ KR LSGGQ+RRV+LA + D L+LDEPT G+DP
Sbjct: 127 YKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE 186
Query: 169 EEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215
E+ N L E + I++ TH +D+ + + + +M +G ++ P
Sbjct: 187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 84.4 bits (209), Expect = 5e-19
Identities = 59/192 (30%), Positives = 104/192 (54%), Gaps = 24/192 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L K+ + ++++ + +L+G SGCGK+T L I G+ +L+G +I+ S
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLH--L 123
+K++G + QQ + +P +I + + Y +G+ L +I EK+ AL
Sbjct: 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK 137
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ K+ LSGGQQ+R+ +A L +PE+L++DEPTS +DP+ +I + L +
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDY 196
Query: 184 TILITTHYIDEA 195
TI+I TH + +A
Sbjct: 197 TIVIVTHNMQQA 208
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 86.8 bits (216), Expect = 6e-19
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQ 76
LD + +TV+ +++LLG +G GK+TL+ ++G + G I + S
Sbjct: 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82
Query: 77 LG--FMPQQISLYPEFTIDEMIC-------YYGLIYGMSLQQIKEKA-EYLQALLHLNHF 126
G + Q++SL P ++ E I +GLI + ++ +A E L L
Sbjct: 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLI---DRKAMRRRARELLARLGLDIDP 139
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
G LS Q++ V +A L D +LILDEPT+ + E +++ + L G I+
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199
Query: 187 ITTHYIDEAKK-SHMIGLMRKGILLEESPP 215
+H +DE + + I ++R G ++ P
Sbjct: 200 YISHRLDEVFEIADRITVLRDGRVVGTRPT 229
Score = 74.1 bits (183), Expect = 1e-14
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----SITS-----KKQLGFMP---QQI 84
I L+GA G+T L + G + G I L I S K + ++P +
Sbjct: 290 IAGLVGA---GRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346
Query: 85 SLYPEFTIDEMICYYGLI-----YGMSLQQIKEKAEYLQALLHL--NHFKRKCGSLSGGQ 137
L + +I E I L + ++ + AE L + ++ G+LSGG
Sbjct: 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN 406
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIA-EEIWNHLLYLAESGRTILITTHYIDEA- 195
Q++V LA L DP++LILDEPT GID V A EI+ + LA G+ IL+ + + E
Sbjct: 407 QQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKAILMISSELPELL 465
Query: 196 KKSHMIGLMRKGILLEESPPK 216
S I +MR+G ++ E +
Sbjct: 466 GLSDRILVMREGRIVGELDRE 486
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 85.5 bits (212), Expect = 8e-19
Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 12/205 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSKKQL 77
V+D L +T+++ T+ +LLG SGCGKTT+L + GQ ++G ++ ++ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80
Query: 78 GFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSG 135
+ Q +L+P ++ E + Y GL + G+ ++ K++ + L+ L F+ R +SG
Sbjct: 81 CMVFQSYALFPHMSLGENVGY-GLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISG 139
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDE 194
GQQ+RV+LA L+ P++L+ DEP S +D + + + L + T L TH E
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199
Query: 195 A-KKSHMIGLMRKGILLEESPPKVL 218
A S + +M KG +++ P+ L
Sbjct: 200 AFAVSDTVIVMNKGKIMQIGSPQEL 224
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 84.1 bits (208), Expect = 9e-19
Identities = 64/250 (25%), Positives = 127/250 (50%), Gaps = 32/250 (12%)
Query: 23 PY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH---LSITSK-- 74
PY + + ++ Y+++G +G GK+TL+ I G + ++IT K
Sbjct: 17 PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK 76
Query: 75 -KQLGFMPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
K + + ++I + +PE T++ I + + M+L ++K A + L+ L
Sbjct: 77 DKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA--HRLLMDLG- 133
Query: 126 FKRKCGSLS-----GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
F R S S GGQ R++++ L +P++++LDEPT+G+DP ++ L L
Sbjct: 134 FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193
Query: 180 ESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSS-- 236
+ +TI++ +H ++E A+ + + +M++G ++ ++ PK L + K L D + L
Sbjct: 194 DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD--KKKLADWHIGLPEIV 251
Query: 237 KQQHDRIEQR 246
+ Q+D EQ+
Sbjct: 252 QLQYD-FEQK 260
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 82.8 bits (205), Expect = 1e-18
Identities = 55/195 (28%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N K + + LD + +++ L+G SG GK+TLL I +G
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 62 LNGGNI-HLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+NG ++ L + ++++G + Q L P+ + E + + + G+ ++I+++
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 117 LQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L+ L+H R + LSGG+Q+RV++A +++ P +LI DEPT +DP EI N L
Sbjct: 120 ALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179
Query: 176 LYLAESGRTILITTH 190
+ ++G T+++ TH
Sbjct: 180 KKINKAGTTVVVATH 194
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 83.2 bits (205), Expect = 1e-18
Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 29/190 (15%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC----------------ITGQNVLNGGNIHLSITSK 74
M ++++ I +L+GASGCGK+T L C I G++V N + L +
Sbjct: 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL----R 78
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-------K 127
K +G + QQ +++ + +I E I Y ++GM + +E+A + L + F K
Sbjct: 79 KNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
+ +LSGGQQ+R+ +A L P+LL+LDEPTS +DP I+ + LL ++++
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLSMIM 196
Query: 188 TTHYIDEAKK 197
TH + + K+
Sbjct: 197 VTHNMQQGKR 206
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 83.4 bits (206), Expect = 1e-18
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 28/216 (12%)
Query: 8 AIRVENAYKRHSSKLPY----VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-------- 55
A+ + Y+ + L Y L + +++ ++ + +++G SGCGK+T +
Sbjct: 6 AVMKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMV 65
Query: 56 ----ITGQNVLNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGM-- 105
+TG+ NG NI +K +G + Q+ + +P+ +I + + Y I+G
Sbjct: 66 PNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKN 124
Query: 106 --SLQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
LQ+I EK+ AL + + SLSGGQQ+R+ +A L +P++L++DEPTS
Sbjct: 125 KKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS 184
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
+DPV +I +L L E TI+I TH + +A +
Sbjct: 185 ALDPVSTRKIEELILKLKEK-YTIVIVTHNMQQAAR 219
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 83.7 bits (207), Expect = 1e-18
Identities = 56/193 (29%), Positives = 102/193 (52%), Gaps = 24/193 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIHLS--- 70
LD + M + ++ + +++G SGCGK+T L CI G+ G N++ +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMS--LQQIKEKAEYLQALL-HLNH 125
+ ++++G + Q+ + +P+ D + YGL I G + + E++ AL +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVA--YGLKIQGYDGDIDERVEESLRRAALWDEVKD 172
Query: 126 FKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
G LSGGQQ+R+ +A + DPE++++DEP S +DPV +I + + LAE T
Sbjct: 173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YT 231
Query: 185 ILITTHYIDEAKK 197
++I TH + +A +
Sbjct: 232 VVIVTHNMQQAAR 244
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 83.4 bits (206), Expect = 1e-18
Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 37/232 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS-- 70
V+ + + + ++ +++L+G SGCGK+TLL + G+ L G NI+
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMIC----YYGLIYGMSLQQIKEKAEYLQALLHL- 123
I ++++G + Q + +P TI + + GL+ S +++ E+ E+ L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLV--KSKKELDERVEWALKKAALW 136
Query: 124 ----NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
+ +LSGGQ++R+ +A L P++L++DEPT+ IDPV +I LL+
Sbjct: 137 DEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI-EELLFEL 195
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLE--------ESPPKVLLEKY 222
+ TI++ TH +A + S + + G L+E E+P L EKY
Sbjct: 196 KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKY 247
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 83.1 bits (205), Expect = 1e-18
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 34/212 (16%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLS----ITSK 74
+ VQ+ T+ +L+G SGCGKTT L I TG+ +L+G +I+ + +
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ---------ALLH--L 123
+++G + Q+ + +P ++ + ++ G+ L I+++ ++ AL
Sbjct: 85 RRVGMVFQKPNPFPTMSV-----FDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ K LSGGQQ+R+ +A L +PE+L++DEPTS +DP I + + L +
Sbjct: 140 DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV-T 198
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
TI+I TH + +A + S G L+E P
Sbjct: 199 TIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 82.9 bits (205), Expect = 2e-18
Identities = 63/232 (27%), Positives = 120/232 (51%), Gaps = 35/232 (15%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN------------VLNGGNIHLS--- 70
L + + +++ + +L+G SGCGK+T L C+ N +L+G NI+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL----QALLH--- 122
+ ++++G + Q+ + +P+ +I E + Y G+ + +K+KA ++L H
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAY-----GLRVNGVKDKAYLAERVERSLRHAAL 135
Query: 123 LNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ K + LSGGQQ+R+ +A L +PE+L++DEP S +DP+ ++I L++
Sbjct: 136 WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI-EELIHE 194
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
++ TI+I TH + +A + S + G L+E P + + + K ED
Sbjct: 195 LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPREKQTED 246
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 83.0 bits (206), Expect = 2e-18
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 32/210 (15%)
Query: 16 KRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73
+ K YV +D + ++++ L+G SGCGK+TL I G G I
Sbjct: 17 GKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL----- 71
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGS 132
F + I+ + E + E L+ + L R
Sbjct: 72 -----FEGKDITKLSKEERRERV-----------------LELLEKVGLPEEFLYRYPHE 109
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHY 191
LSGGQ++R+ +A L +P+L++ DEP S +D + +I N L L E G T L +H
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD 169
Query: 192 IDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ + S I +M G ++E P + +
Sbjct: 170 LSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 83.2 bits (205), Expect = 2e-18
Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 17/232 (7%)
Query: 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNVLNG 64
+V Y+ +S L + + V+K + +L+G +G GK+TLL + G + +
Sbjct: 6 KVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65
Query: 65 GNIHLSITSK-KQLGFMPQQISL---YPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQA 119
G+I +S TSK K++ + +++ + +PE + E + +G + KEKAE + A
Sbjct: 66 GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA 125
Query: 120 L------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L +++ LSGGQ RRV++A L +PE+L+LDEPT+G+DP E+
Sbjct: 126 EKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185
Query: 174 HLLYLAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
+ +SG+T+++ TH +D+ A + + L+ KG ++ P + ++ +
Sbjct: 186 LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 80.8 bits (200), Expect = 3e-18
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 39/167 (23%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC---------ITGQNVLNGGNIHLSITSKKQLGFMPQQ 83
V+ T+ +L+G SG GKTTLL ITG+ ++NG L ++ G++ QQ
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING--RPLDKNFQRSTGYVEQQ 87
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143
P T+ E + + L+ G+S++ Q++R+++
Sbjct: 88 DVHSPNLTVREALRFSALLRGLSVE----------------------------QRKRLTI 119
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+ L P +L LDEPTSG+D A I L LA+SG+ IL T H
Sbjct: 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 80.4 bits (199), Expect = 3e-18
Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 43/196 (21%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH-LSITSKKQ 76
VL L + +++ +LLG SG GK+TLL +T G+ L+G + L
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136
+ + Q+ L+ T+ N+ R+ SGG
Sbjct: 77 ISVLNQRPYLFDT-TL------------------------------RNNLGRR---FSGG 102
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196
+++R++LA LL D +++LDEPT G+DP+ ++ + + + + +T++ TH++ +
Sbjct: 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGIE 161
Query: 197 KSHMIGLMRKGILLEE 212
I + G ++ +
Sbjct: 162 HMDKILFLENGKIIMQ 177
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 84.8 bits (210), Expect = 4e-18
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 14/206 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTL---LSC----------ITGQNVLNGGNIHLSI 71
VL + + + + +++GASG GK+TL L C + GQ+V L+
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 72 TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKC 130
++ GF+ Q+ L T + + + G+ +Q +A+ L L L + + +
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGGQQ+RVS+A L++ ++++ DEPT +D EE+ L L + G T++I TH
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 191 YIDEAKKSHMIGLMRKGILLEESPPK 216
A ++ + +R G ++ P +
Sbjct: 203 DPQVAAQAERVIEIRDGEIVRNPPAQ 228
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 83.0 bits (205), Expect = 4e-18
Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 32/245 (13%)
Query: 3 LKDKCAIRVENAYKRHSSKLP---YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59
L D +RV+N Y K L+ + T +K+ IY ++G SG GK+TL++ G
Sbjct: 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 60 NVLNGGNIHL-SITSKKQLGFMPQQISL--------------------YPEF-----TID 93
G I + I + + +PE+ TI+
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 94 EMICYYGLIYGMSLQQIKEKAE-YLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHDP 151
+ I + + G+ + K+ A+ YL + L ++ +R LSGGQ+RRV++A L P
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQP 195
Query: 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA-KKSHMIGLMRKGILL 210
E+LI DEPT+G+DP E+ +L + +T+ + TH ++ + + + +M KG +L
Sbjct: 196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
Query: 211 EESPP 215
+ P
Sbjct: 256 KTGTP 260
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 84.3 bits (209), Expect = 4e-18
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 29/194 (14%)
Query: 41 LLGASGCGKTTLLSCITG---QNVLNGGNIHLS---ITSKKQ---LGFMPQQISLYPEFT 91
++G+SG GKTTL++ + + V G++ L+ I +K+ ++ Q P T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 92 IDEMICYYG-LIYGMSLQQIKEKAEYLQALLH-LNHFKRKCG-----------SLSGGQQ 138
+ E + + L + + KEK E + +L L RKC LSGG++
Sbjct: 116 VREHLMFQAHLRMPRRVTK-KEKRERVDEVLQALG--LRKCANTRIGVPGRVKGLSGGER 172
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKS 198
+R++ A LL DP LL DEPTSG+D +A + L LA+ G+TI+ T H S
Sbjct: 173 KRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH----QPSS 228
Query: 199 HMIGLMRKGILLEE 212
+ L K IL+ E
Sbjct: 229 ELFELFDKIILMAE 242
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 82.2 bits (203), Expect = 5e-18
Identities = 66/215 (30%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 38 IYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSITS----KKQLGFMP 81
+ +++G SGCGK+T L I TG + +G +I+ T +K++G +
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 82 QQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLH--LNHFKRKCGSLSG 135
Q+ + +P+ +I + I Y ++G++ L++I EK+ AL + + LSG
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG 185
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQQ+R+ +A TL +PE+L+LDEPTS +DP +I + + L S TI+I TH + +A
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTIMIVTHNMQQA 244
Query: 196 KK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
+ S +G+L+E +P L + ED
Sbjct: 245 SRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTED 279
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 78.1 bits (193), Expect = 5e-18
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 21/126 (16%)
Query: 50 TTLLSCITGQNVLNGGNIHLSITS----------KKQLGFMPQQISLYPEFTIDEMICYY 99
+TLL ITG G I L +K++G + Q L+PE T+ E + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 100 GLIYGMSLQQIKEKAEYLQAL--LHLNHFKRK--CGSLSGGQQRRVSLAITLLHDPELLI 155
A +AL + L F + G+LSGGQ++RV++A LL P+LL+
Sbjct: 61 LRDKEA-------DARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLL 113
Query: 156 LDEPTS 161
LDEPT+
Sbjct: 114 LDEPTA 119
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 79.6 bits (197), Expect = 6e-18
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 48/209 (22%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN R+ P VL + +++ +++G SG GK+TL I G G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 69 L---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L I+ +G++PQ L+ +I E I
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI----------------------- 96
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YL 178
LSGGQ++R+ LA L +P +L+LDEP S +D V E N + L
Sbjct: 97 -------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAAL 142
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKG 207
+G T ++ H + + I ++ G
Sbjct: 143 KAAGATRIVIAHRPETLASADRILVLEDG 171
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 81.0 bits (201), Expect = 6e-18
Identities = 60/216 (27%), Positives = 119/216 (55%), Gaps = 25/216 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLS-------CITGQNVLNGGNIH-LSITS-KK 75
+L L +T+ +L+G+SGCGK+T++S +G+ +L+G +I L++ +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH------LNHFKRK 129
Q+G + Q+ L+ + TI E I Y G + ++++E A+ +A +H + +
Sbjct: 78 QIGLVSQEPVLF-DGTIAENIRY-GK-PDATDEEVEEAAK--KANIHDFIMSLPDGYDTL 132
Query: 130 CG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A LL +P++L+LDE TS +D +E++ L A GRT
Sbjct: 133 VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD-AESEKLVQEALDRAMKGRTT 191
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I +++ G ++E+ L+ +
Sbjct: 192 IVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 81.0 bits (200), Expect = 6e-18
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITS---KKQLGF 79
L + +T+Q+ SL+G SGCGK+TLL+ I+G G + L IT + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 80 MPQQISLYPEFTIDEMICYY--GLIYGMSLQQIKEKAEYLQALLHLNHFKRK-CGSLSGG 136
Q SL P T+ E I ++ +S + + E AL+ L K G LSGG
Sbjct: 61 --QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGG 118
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEA 195
++RV++A L P++L+LDEP +D + + L+ + E T+L+ TH +DEA
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEA 178
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 81.6 bits (202), Expect = 8e-18
Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 22/225 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNVLN 63
IRVE+ R+ Y L + +V + +++G +G GK+TL + G +
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 64 GGNIHLSITS----KKQLGFMPQQISLYP--EF---TIDEMICYYGLI-YGMSLQQIKEK 113
G + LS + ++Q+G + Q P +F T+ + + + GL G+ +++ E+
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQN----PDNQFVGATVQDDVAF-GLENIGVPREEMVER 120
Query: 114 AEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
+ + + F R+ LSGGQ++RV++A L P+++ILDE TS +DP E+
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180
Query: 173 NHLLYLAESGR-TILITTHYIDEAKKSHMIGLMRKGILLEESPPK 216
+ L E T+L TH +DEA ++ + +M KG +LEE P+
Sbjct: 181 ETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 81.3 bits (200), Expect = 8e-18
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 32/221 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----------VLNGG----NIHL 69
VLD++ M + SL+G +G GKTT L + N VL GG N
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 70 SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY---LQALLH---- 122
+ ++++G + Q+ + +P +D ++ G+ ++ + E+ QA L
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLA------GVRAHKLVPRKEFRGVAQARLTEVGL 149
Query: 123 LNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ K + LSGGQQ+ + LA TL +PE+L+LDEPTS +DP E+I + L
Sbjct: 150 WDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219
A+ I++T + A+ S L G L+EE P + L
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 83.6 bits (207), Expect = 9e-18
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 20/219 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN L + ++Q +++G SG GK+TL I G G++
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 69 LSITSKKQ---------LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L KQ +G++PQ + L+P T+ E I +G ++I E A+
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG--ENADPEKIIEAAKLAGV 433
Query: 120 ---LLHL-NHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+L L + + G +LSGGQ++R++LA L DP+L++LDEP S +D + +
Sbjct: 434 HELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILL 210
N + L G T+++ TH I +++ G +
Sbjct: 494 ANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 80.9 bits (199), Expect = 9e-18
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 27/233 (11%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-------- 55
K++ I EN ++ L+ + + + K++I +L+G SGCGK+T L
Sbjct: 3 KNEAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLV 60
Query: 56 ----ITGQNVLNGGNIHLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS- 106
I G + G NI+ + + ++++G + Q + + +I + I Y I+G
Sbjct: 61 EGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKD 119
Query: 107 ---LQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
L +I E++ AL + + SLSGGQQ+R+ +A TL +P ++++DEPTS
Sbjct: 120 KKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213
+DP+ +I ++ L ES TI+I TH + +A + S G + EES
Sbjct: 180 ALDPISTGKIEELIINLKES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 80.8 bits (200), Expect = 1e-17
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-------VLNG---GNIHLSITSK 74
+L L V ++++G +G GKTTLLS +TG++ L G G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 75 KQLGF--MPQQISLYPEFTIDEMIC--YY---GLIYGMSLQQIKEKAEYLQALLHLNHFK 127
K++G T+ +++ ++ G+ + A++L LL H
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 128 -RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA--ESGRT 184
R GSLS G+QRRV +A L+ DPELLILDEP G+D + E++ N L LA
Sbjct: 166 DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPA 225
Query: 185 ILITTHYIDEA 195
+L TH+ +E
Sbjct: 226 LLFVTHHAEEI 236
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 79.8 bits (197), Expect = 1e-17
Identities = 61/237 (25%), Positives = 118/237 (49%), Gaps = 29/237 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I E+ R+ P +LD + + ++ + ++G SG GK+TL I G+ +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q+ L+ +I + I GMS++++ E A+ A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNR-SIRDNIALAD--PGMSMERVIEAAKLAGA 117
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+ F + LSGGQ++R+++A L+H+P +LI DE TS +D
Sbjct: 118 ----HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD-YE 172
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
+E ++ +GRT++I H + K + I +M KG ++E+ LL + +
Sbjct: 173 SEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGL 229
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 82.9 bits (205), Expect = 2e-17
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN + K P VL + +++ +++G SG GK+TL+ + G I
Sbjct: 329 IEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 69 L------SITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ I+ K++G + Q L+ TI E I G + ++I+E + A
Sbjct: 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENI-ALGRPD-ATDEEIEEALKLANA 444
Query: 120 ---LLHL-NHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ +L + + G LSGGQ++R+++A LL +P +LILDE TS +D I
Sbjct: 445 HEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALI 504
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ L L + GRT LI H + K + I ++ G ++E + LL K
Sbjct: 505 QDALKKLLK-GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 79.5 bits (196), Expect = 2e-17
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL----SITSKKQLGFMPQQISL 86
++ K + LLG +G GKTTLL I G G + + + +G++PQ+
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR--- 57
Query: 87 YPEFTIDEMICYYGLIYG-----MSLQQIKEKAEYL---QAL--LHLNHF-KRKCGSLSG 135
EF D I + + + A++ AL + L R G LSG
Sbjct: 58 -HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQ++RV +A L P +L+LDEP +G+D E + + LA +G IL+TTH + +A
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 79.6 bits (197), Expect = 2e-17
Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 26/232 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I EN + P VL + T+ +++G SG GK+T+L + +G +
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I +++ S ++ +G +PQ L+ + TI I Y + +++ E A+ A
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFND-TIGYNIRYGRP--DATDEEVIEAAK--AA 114
Query: 120 LLH--LNHFKRKCGS--------LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
+H + F + LSGG+++RV++A +L +P +L+LDE TS +D
Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
EI L +++ GRT ++ H + + I +++ G ++E + LL K
Sbjct: 175 EIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 79.3 bits (195), Expect = 3e-17
Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 24/222 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLS----ITSK 74
M ++++ +++G SGCGK+T+L I TG+ +L+ +I+ ++ +
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84
Query: 75 KQLGFMPQQISLYPEFTI-DEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----NHFKR 128
+++G + Q+ + +P +I D +I Y L ++ + E E + L + K
Sbjct: 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKS 144
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGGQQ+R+ +A T+ PE++++DEP S +DP+ +I + L E TI+I
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIV 203
Query: 189 THYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TH + +A + S G L+E K + K ED
Sbjct: 204 THNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTED 245
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 80.8 bits (199), Expect = 4e-17
Identities = 58/207 (28%), Positives = 112/207 (54%), Gaps = 20/207 (9%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI------HLSITSKKQL 77
+ +++ I+ ++G SG GK+T++ + GQ +++G +I L +K++
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL---NHFKRKCGSLS 134
+ Q +L P T+ + + + G++ ++ +EKA L AL + N+ LS
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKA--LDALRQVGLENYAHSYPDELS 166
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYID 193
GG ++RV LA L +P++L++DE S +DP+I E+ + L+ L A+ RTI+ +H +D
Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226
Query: 194 EAKK-SHMIGLMRKGILLEESPPKVLL 219
EA + I +M+ G +++ P +L
Sbjct: 227 EAMRIGDRIAIMQNGEVVQVGTPDEIL 253
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 79.5 bits (196), Expect = 4e-17
Identities = 52/186 (27%), Positives = 100/186 (53%), Gaps = 22/186 (11%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNVLNGGNIHLS----ITSK 74
L + + ++K + ++LG +G GK+TL L +G+ + +G I S + +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQ----QIKEKAEYLQALLHLNHFKRK 129
+ +G + Q P+ + Y + +G ++L+ +++++ + + H K K
Sbjct: 82 ESVGMVFQD----PDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK 137
Query: 130 -CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILI 187
LS GQ++RV++A L+ +P++L+LDEPT+G+DP+ EI L+ + + G TI+I
Sbjct: 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
Query: 188 TTHYID 193
TH ID
Sbjct: 198 ATHDID 203
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 78.9 bits (194), Expect = 5e-17
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIHL---- 69
L + M V + + +L+G SGCGK+T L C G+ +L+ N+++
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 70 --SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI-KEKAE-YLQALLHLNH 125
I + ++ + Q+ + +P+ +I E + Y I G+ + I +E+ E L+ +
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE 150
Query: 126 FKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
K + G +LSGGQQ+R+ +A L DPE+L+ DEPTS +DP+ I L+ ++
Sbjct: 151 VKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELISDLKN 209
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TILI TH + +A + S M G L+E + K K ED
Sbjct: 210 KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTED 258
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 78.4 bits (193), Expect = 6e-17
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 39/222 (17%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIH---- 68
VLD + + + +TI +L+G SG GK+TLL ++G+ L+G +I
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 69 LSITSKKQLGF-MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL---- 123
+ + + Q+ F +P I P +I E + G+ L ++ + + LQ +
Sbjct: 78 IELRRRVQMVFQIPNPI---PNLSIFENVAL-----GLKLNRLVKSKKELQERVRWALEK 129
Query: 124 --------NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+ G LSGGQQ+R+ +A L PE+L+ DEPT+ +DP +I +
Sbjct: 130 AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF 189
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216
L L + TI++ TH+ +A + S + + KG ++E P +
Sbjct: 190 LELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 78.4 bits (194), Expect = 7e-17
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 32/192 (16%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG---------QNVLNGGNI-HLSITSK 74
+L + +TV++ +++++G +G GK+TL I G + + +G +I LS +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 75 KQLG-FMPQQISLYP---------EFTIDEM--ICYYGLIYGMSLQQIKEKAEYLQALLH 122
+ G F+ Q YP +F M I ++++KEKAE LL
Sbjct: 79 ARAGIFLAFQ---YPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE----LLG 131
Query: 123 LN--HFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L+ +R SGG+++R + LL +P+L ILDEP SG+D + + + L
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 180 ESGRTILITTHY 191
E GR +LI THY
Sbjct: 192 EEGRGVLIITHY 203
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 78.6 bits (194), Expect = 8e-17
Identities = 60/207 (28%), Positives = 113/207 (54%), Gaps = 25/207 (12%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK---KQLGFMPQQI 84
+T++ + + +G +G GK+T++ + G +V G++ + ITS K + + +++
Sbjct: 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKV 87
Query: 85 SLYPEF--------TIDEMICYYGLIYGMSLQQIKEKAEYL-QALLHL-----NHFKRKC 130
L +F T+ + + + +G+S +E+AE L + L L + F++
Sbjct: 88 GLVFQFPESQLFEETVLKDVAFGPQNFGVS----QEEAEALAREKLALVGISESLFEKNP 143
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGGQ RRV++A L +P++L+LDEPT+G+DP +E+ L +SG TI++ TH
Sbjct: 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
Query: 191 YIDE-AKKSHMIGLMRKGILLEESPPK 216
+D+ A + + ++ KG L+ PK
Sbjct: 204 LMDDVANYADFVYVLEKGKLVLSGKPK 230
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 78.2 bits (192), Expect = 8e-17
Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 29/250 (11%)
Query: 3 LKDKCAIR-VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---- 57
+ K IR V Y +H VL + M + I +++G SGCGK+TLL +
Sbjct: 1 MDPKIKIRGVNFFYHKHQ-----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND 55
Query: 58 --------GQNVLNGGNIHLS----ITSKKQLGFMPQQISLYPEFTIDEMIC---YYGLI 102
G +L+ NI+ + +K++G + QQ + +P+ D + G
Sbjct: 56 IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTT 115
Query: 103 YGMSLQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
L ++ EK+ AL ++ + +LSGGQQ+R+ +A L +PE++++DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLL 219
S +DPV I L+ + TI I TH + + A+ S G + G L+E +
Sbjct: 176 SALDPVSTMRI-EELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234
Query: 220 EKYNMKSLED 229
+ K ED
Sbjct: 235 SRPRDKRTED 244
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 79.8 bits (197), Expect = 1e-16
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQN 60
AI EN R++ P VL L + ++ ++G SG GK+TL + GQ
Sbjct: 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514
Query: 61 VLNGGNIHLS--ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
+++G ++ ++ ++Q+G + Q+ L+ +I + I G + + A+
Sbjct: 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAG 571
Query: 119 ALLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
A ++ + K +LSGGQ++R+++A L+ +P +LI DE TS +D
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I ++ + GRT++I H + + I ++ KG + E + LL
Sbjct: 632 IMRNMREICR-GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 77.3 bits (191), Expect = 2e-16
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 10/220 (4%)
Query: 9 IRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN- 66
R++ K + L + + K ++G +G GK+TLL I G G
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 67 -IHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
+ + +LG PE T E I GLI G++ ++I EK + + L
Sbjct: 85 KVTGKVAPLIELG-----AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGD 139
Query: 126 FK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
F + + S G R++ ++ +P++L+LDE + D E+ L L E +T
Sbjct: 140 FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199
Query: 185 ILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223
I++ +H + K+ + G + E P+ ++ Y
Sbjct: 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 79.5 bits (196), Expect = 2e-16
Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 38/244 (15%)
Query: 9 IRVENAYKRHSS---KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I+V N KR+ S + +D + + V++ I+ ++G SG GKTTL I G G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 66 NIHLSI----------------TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109
+++ + +K+ +G + Q+ LYP T+ + L + L+
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLD-----NLTEAIGLEL 394
Query: 110 IKEKAEYLQALLHL-----------NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158
E A ++A++ L + LS G++ RV+LA L+ +P ++ILDE
Sbjct: 395 PDELAR-MKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 159 PTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216
PT +DP+ ++ + +L E +T +I +H +D LMR G +++ P+
Sbjct: 454 PTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 217 VLLE 220
++E
Sbjct: 514 EIVE 517
Score = 55.2 bits (133), Expect = 1e-08
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHY 191
LSGG+++RV LA L +P L + DEPT +DP A+ + N L SG ++++T+H+
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 192 IDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDV 230
+ S + G + EE P ++ + M+ + +V
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF-MEGVSEV 267
Score = 29.0 bits (65), Expect = 4.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58
I V+N K+ K VL + T+++ + +LG SG GK+ L+ + G
Sbjct: 1 IEVKNLTKKFDGKE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG 48
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 77.3 bits (190), Expect = 2e-16
Identities = 56/196 (28%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLS--------- 70
+L + + + K+++ +L+G SGCGK+T + + N L + G+I+L
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEK--AEYLQALLHLNH 125
+ +K++G + Q+ + +P+ D + YGL I+G + E+ E L+A +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVA--YGLRIHGEDDEDFIEERVEESLKAAALWDE 135
Query: 126 FKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
K K LSGGQQ+R+ +A T+ PE++++DEP S +DP+ +I + L++ +
Sbjct: 136 VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED-LIHKLKE 194
Query: 182 GRTILITTHYIDEAKK 197
TI+I TH + +A +
Sbjct: 195 DYTIVIVTHNMQQATR 210
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 74.4 bits (184), Expect = 2e-16
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 75/191 (39%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +EN K + KL +L + +T+ L+G +G GK+TLL I G+ + G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 69 LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKR 128
T K +G+ Q
Sbjct: 59 WGSTVK--IGYFEQ---------------------------------------------- 70
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL-------L--YLA 179
LSGG++ R++LA LL +P LL+LDEPT NHL L L
Sbjct: 71 ----LSGGEKMRLALAKLLLENPNLLLLDEPT------------NHLDLESIEALEEALK 114
Query: 180 ESGRTILITTH 190
E T+++ +H
Sbjct: 115 EYPGTVILVSH 125
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 79.4 bits (196), Expect = 2e-16
Identities = 56/217 (25%), Positives = 110/217 (50%), Gaps = 31/217 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITSKKQ 76
+L + +T++ ++ +++G SG GK+TL + +G+ +LNG ++ + + +Q
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 77 L-GFMPQQISLY-------------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
++PQ+ ++ + DE + + +IK+ E +
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDE------IWAACEIAEIKDDIENMPLGYQ 602
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ S+SGGQ++R++LA LL D ++LILDE TS +D + ++I N+LL L +
Sbjct: 603 -TELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-- 659
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219
+TI+ H + AK+S I ++ G ++E+ LL
Sbjct: 660 KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 76.0 bits (187), Expect = 4e-16
Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 28/238 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+R + KR VLD L +V +L+G SG GK+T+L + ++ G I
Sbjct: 1 VRFSDVTKRFGILT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 69 LSITS----------------------KKQLGFMPQQISLYPEFT-IDEMICYYGLIYGM 105
+ + ++G + Q +L+P T +D + L+ GM
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM 118
Query: 106 SLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ + +++A L ++ L + LSGGQQ+RV++A L P++++ DE TS +D
Sbjct: 119 ARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178
Query: 165 PVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
P + E+ N + LA E T+L+ TH + A++ + + KG ++E+ P +
Sbjct: 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 74.4 bits (184), Expect = 4e-16
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQLGFMPQ 82
V+ I + G G G+T L + G G I L S + G
Sbjct: 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG---- 76
Query: 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVS 142
I+ PE E GL+ +S + E AL L LSGG Q++V
Sbjct: 77 -IAYVPEDRKRE-----GLVLDLS---VAENI----ALSSL---------LSGGNQQKVV 114
Query: 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA-KKSHMI 201
LA L DP +LILDEPT G+D EI+ + LA++G+ +L+ + +DE I
Sbjct: 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRI 174
Query: 202 GLMRKG 207
+M +G
Sbjct: 175 LVMYEG 180
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 76.2 bits (188), Expect = 5e-16
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 28/244 (11%)
Query: 9 IRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
IR EN +Y +L LD + + ++ + ++LG +G GK+TLL ++G+ + G +
Sbjct: 2 IRAENLSYSLAGRRL---LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 68 H-----LSITSKKQL----GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
L+ ++L +PQ SL FT+ E++ G I S ++ +E
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVV-QMGRIPHRSGREPEEDERIAA 117
Query: 119 ALL---HLNHF-KRKCGSLSGGQQRRVSLAITL--LHDPEL----LILDEPTSGIDPVIA 168
L L+ R +LSGG+Q+RV LA L L P L LDEPTS +D
Sbjct: 118 QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177
Query: 169 EEIWNHLLYLAESGRTILITTHYID-EAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSL 227
LA G +L H ++ A+ + I L+ +G ++ P+ +L ++L
Sbjct: 178 HHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL---TDETL 234
Query: 228 EDVF 231
E V+
Sbjct: 235 ERVY 238
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 77.9 bits (193), Expect = 6e-16
Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 40/223 (17%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH-LSITS-KK 75
VL L + ++ +LLG +GCGK+TLL +T G+ +LNG I S + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414
Query: 76 QLGFMPQQISLY------------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH- 122
+ + Q++ L+ P + + +I LQQ+ L+ LL
Sbjct: 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALI--------EVLQQVG-----LEKLLED 461
Query: 123 ---LNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
LN + + G LSGG+QRR+ +A LLHD LL+LDEPT G+D +I L
Sbjct: 462 DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH 521
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
A+ +T+L+ TH + ++ I +M G ++E+ + LL +
Sbjct: 522 AQ-NKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 77.8 bits (192), Expect = 7e-16
Identities = 61/263 (23%), Positives = 114/263 (43%), Gaps = 35/263 (13%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ + K++S VL + T+ +++LLG +G GK+TL+ I G + G
Sbjct: 9 PPLLCARSISKQYSGVE--VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Query: 66 NI--------HLSITSKKQLG--FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
+ L+ QLG +PQ+ L+P ++ E I + L + + +
Sbjct: 67 TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF-------GLPKRQASMQ 119
Query: 116 YLQALL-----HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
++ LL L+ GSL ++ V + L+ D +LILDEPT+ + P E
Sbjct: 120 KMKQLLAALGCQLD-LDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETER 178
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
+++ + L G I+ +H + E ++ + I +MR G + L K S +D
Sbjct: 179 LFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI-------ALSGKTADLSTDD 231
Query: 230 VFLLLSSKQQHDRIEQRRKSFLW 252
+ ++ + + +K LW
Sbjct: 232 IIQAITPAAREKSLSASQK--LW 252
Score = 58.9 bits (143), Expect = 1e-09
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKKQLG--FM 80
+ V+ I L G G G+T L + G GG I LS + G ++
Sbjct: 284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343
Query: 81 P---QQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKA---EYLQAL-LHLNHFKRKC 130
P Q LY + + +C L + G ++ +E A Y +AL + NH ++
Sbjct: 344 PEDRQSSGLYLDAPLAWNVC--ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA 401
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+LSGG Q++V +A L P+LLI+DEPT G+D +I+ + +A +L +
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISS 461
Query: 191 YIDE 194
++E
Sbjct: 462 DLEE 465
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 76.0 bits (187), Expect = 7e-16
Identities = 57/208 (27%), Positives = 111/208 (53%), Gaps = 17/208 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSKKQLGF 79
LD + +++ + +L+G +G GK+TL+ + G I + T K L
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 80 MPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQIKEKA-EYLQAL-LHLNHFKRK 129
+ +++SL +PE T+ + + + +G S + KEKA ++L+ + L + +
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS 142
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
LSGGQ RRV++A + ++PE+L LDEP +G+DP +E+ ++G T+++ T
Sbjct: 143 PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202
Query: 190 HYIDE-AKKSHMIGLMRKGILLEESPPK 216
H +D+ A+ + + ++ G L++ + PK
Sbjct: 203 HNMDDVAEYADDVLVLEHGKLIKHASPK 230
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 74.6 bits (184), Expect = 7e-16
Identities = 52/178 (29%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-------QNVLNGGNIHLSITSKKQ- 76
+ L T+ + G +G GKTTLL + G + G I S Q
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-QIKEKAEY--LQALLHLNHFKRKCGSL 133
L ++ Q + E T E + ++ +G I E L L L G L
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-----PVGQL 131
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTH 190
S GQQRRV+LA L L ILDEP + +D + L+ A G +L+TTH
Sbjct: 132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIVLLTTH 188
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 75.4 bits (185), Expect = 8e-16
Identities = 49/196 (25%), Positives = 99/196 (50%), Gaps = 24/196 (12%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLL------------SCITGQNVLNGGNIHLSI 71
+ L + M +++ ++ + +G SGCGK+T L + + G+ ++G NI+
Sbjct: 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76
Query: 72 TS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ-IKEKAEYLQALLHL--- 123
+K +G + Q+ + +P+ +I E + Y + G+ I+++ E L
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE 135
Query: 124 --NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
+ K +LSGGQQ+R+ +A + P +L++DEP S +DP+ ++ L++ +
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV-EELIHELKK 194
Query: 182 GRTILITTHYIDEAKK 197
TI+I TH + +A +
Sbjct: 195 DYTIVIVTHNMQQAAR 210
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 77.6 bits (192), Expect = 8e-16
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 55/248 (22%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I N + + LD + +T++ +++G G GK+TLL + G G++
Sbjct: 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 68 HLSITSKKQL---------GFMPQQISLYPEFTIDEMICYYG-----LIYGMSLQQIKEK 113
L +Q+ G++PQ L+ YG + G +
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLF-----------YGTLRDNIALGAPY---ADD 568
Query: 114 AEYLQAL----------LHLNHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEP 159
E L+A H + + G SLSGGQ++ V+LA LL DP +L+LDEP
Sbjct: 569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEP 628
Query: 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGL------MRKGILLEES 213
TS +D +EE + L +G+T+++ TH ++ ++ L M G ++ +
Sbjct: 629 TSAMDNR-SEERFKDRLKRWLAGKTLVLVTH------RTSLLDLVDRIIVMDNGRIVADG 681
Query: 214 PPKVLLEK 221
P +LE
Sbjct: 682 PKDQVLEA 689
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 75.7 bits (186), Expect = 9e-16
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-LSITSKKQL-----GFMPQQIS 85
TV +I +L+G +G GK+TL + G L G I L +++ L ++PQ
Sbjct: 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEE 88
Query: 86 L---YPEFTIDE-MICYYGLIYGMSLQQIKEKAEYLQALLH---LNHFKRKCGSLSGGQQ 138
+ +P D M+ YG + + + +++ AL + R+ G LSGGQ+
Sbjct: 89 VDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK 148
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKS 198
+RV LA + ++++LDEP +G+D I + L L + G+T+L++TH + +
Sbjct: 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF 208
Query: 199 HMIGLMRKGILLEESPPKVLLEKYNMK 225
+M KG +L P + N++
Sbjct: 209 CDYTVMVKGTVLASGPTETTFTAENLE 235
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 75.8 bits (186), Expect = 9e-16
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 32/222 (14%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGG------------NIH----LSITSKKQLGFMP 81
I + +G SGCGK+TLL C N L G NI+ S+ ++Q+G +
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVF 107
Query: 82 QQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQ 137
Q+ + +P+ +I E I + G +L ++ E + A+ + K K +LSGGQ
Sbjct: 108 QRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
Q+R+ +A + P++L++DEP S +DP+ ++ L L E TI++ TH + +A +
Sbjct: 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTIIMVTHNMQQASR 225
Query: 198 -SHMIGLM---------RKGILLEESPPKVLLEKYNMKSLED 229
+ R+G L+E SP + + K +
Sbjct: 226 VADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEARE 267
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 72.8 bits (180), Expect = 1e-15
Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 59/208 (28%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ + KR LD + ++V++ +++LLG +G GK+TL+ ++G + G I
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ S ++ G I ++Y +S
Sbjct: 59 VDGKEVSFASPRDARRAG-----I---------------AMVYQLS-------------- 84
Query: 121 LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
G+++ V +A L + LLILDEPT+ + P E ++ + L
Sbjct: 85 --------------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA 130
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKG 207
G ++ +H +DE + + + ++R G
Sbjct: 131 QGVAVIFISHRLDEVFEIADRVTVLRDG 158
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 75.5 bits (185), Expect = 2e-15
Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 24/218 (11%)
Query: 2 DLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61
D + N + ++ +VL L + ++++ + + +G SGCGK+T L + N
Sbjct: 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND 133
Query: 62 LNGGNIH----------------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105
L G H S+ + ++G + Q+ + + E +I + + Y G+
Sbjct: 134 LIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGI 192
Query: 106 S----LQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159
+ L++I EK+ AL + + +LSGGQQ+R+ +A + +PE+L++DEP
Sbjct: 193 NDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252
Query: 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
TS +DP+ +I +L L + +I+I TH + +A++
Sbjct: 253 TSALDPIATAKIEELILELKKK-YSIIIVTHSMAQAQR 289
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 76.7 bits (189), Expect = 2e-15
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 22/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
+ N R+ + LD + + ++ +L+G SG GK+TL++ I GQ +
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE--YL 117
L+G ++ ++ S ++Q+ + Q + L+ + TI I Y G +I+ Y
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAY-GRTEQADRAEIERALAAAYA 448
Query: 118 QAL-------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
Q L LSGGQ++R+++A LL D +LILDE TS +D
Sbjct: 449 QDFVDKLPLGLDTP-IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERL 507
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
+ L L + GRT L+ H + +K+ I +M G ++E LL
Sbjct: 508 VQAALERLMQ-GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 74.7 bits (184), Expect = 2e-15
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 30/231 (12%)
Query: 19 SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-------- 70
S LD + + V+K +LG +G GK+T+ + + + G +++
Sbjct: 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE 78
Query: 71 ----ITSKKQLGFM--PQQISLYPEFTIDEMICYYG---LIYGMSLQQIKEKAEYLQALL 121
I +K + F QI TI E +G L G+ ++I+E+ + +L
Sbjct: 79 NLWDIRNKAGMVFQNPDNQIVA----TIVEEDVAFGPENL--GIPPEEIRERVDE--SLK 130
Query: 122 HLNHFKRKCGS---LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ ++ + + LSGGQ++RV++A L PE +I DEPT+ +DP E+ N + L
Sbjct: 131 KVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190
Query: 179 -AESGRTILITTHYIDEAKKSHMIGLMRKG-ILLEESPPKVLLEKYNMKSL 227
+ G TI++ THY++EA ++ I +M G +++E +P ++ E MK +
Sbjct: 191 NKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKI 241
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 77.1 bits (190), Expect = 2e-15
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 31/182 (17%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC---------ITGQNVLNGGNIHLSITSKKQLGFMPQQ 83
V+ T+ +L+GASG GKTTLL+ ITG + L G L + ++ +G++ QQ
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG-RPLDSSFQRSIGYVQQQ 844
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQ-----IKEKAEYLQA---LLHLNHFKRK------ 129
P T+ E L + L+Q EK EY++ LL + +
Sbjct: 845 DLHLPTSTVRE-----SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG 899
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLI-LDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
G L+ Q++R+++ + L+ P+LL+ LDEPTSG+D A I + LA+ G+ IL T
Sbjct: 900 EG-LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCT 958
Query: 189 TH 190
H
Sbjct: 959 IH 960
Score = 32.4 bits (74), Expect = 0.42
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 110 IKEKAEYLQALLHLNH-FKRKCGS-----LSGGQQRRVSLAITLLHDPELLILDEPTSGI 163
K A+ A L+H K G+ +SGG+++RVS+A L ++ D T G+
Sbjct: 181 AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGL 240
Query: 164 DPVIAEEIWNHL 175
D A E L
Sbjct: 241 DSATALEFIRAL 252
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 75.5 bits (186), Expect = 2e-15
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 12/132 (9%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSIT-------SKKQLGFMPQQISLYPEFTI-DE 94
G SGCGK+TLL I G + G++ + +++ +G + Q +LYP ++ +
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95
Query: 95 MICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPE 152
M +GL + G ++I ++ + +L L H RK +LSGGQ++RV++ TL+ +P
Sbjct: 96 M--SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 153 LLILDEPTSGID 164
+ +LDEP S +D
Sbjct: 154 VFLLDEPLSNLD 165
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 73.2 bits (180), Expect = 3e-15
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 21/207 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL------- 77
+L + + V++ +++G SG GK+TLL+ + G + + G + L +L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 78 ------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-EYLQAL---LHLNHFK 127
GF+ Q L P T E + + G S + A L+A+ L H+
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP 144
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTIL 186
LSGG+Q+RV+LA P++L DEPT +D ++I + L L E G T++
Sbjct: 145 ---AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201
Query: 187 ITTHYIDEAKKSHMIGLMRKGILLEES 213
+ TH A + +R G L+E++
Sbjct: 202 LVTHDPQLAARCDRQLRLRSGRLVEDA 228
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 72.4 bits (178), Expect = 3e-15
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 14/187 (7%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
+ + L T+ + G +G GKTTLL + G + G + + T+ + P +
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 85 SLY--------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136
LY PE + E + ++ I+G Q+ E A L LS G
Sbjct: 75 ILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAAVGLTGFED--LPAAQLSAG 131
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY---ID 193
QQRR++LA L L ILDEPT+ +D + L G +L+TTH +
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
Query: 194 EAKKSHM 200
EA++ +
Sbjct: 192 EARELRL 198
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 73.0 bits (180), Expect = 4e-15
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL------- 77
LD + +T++ +++G G GK+TLL + G G++ L T +QL
Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 78 --GFMPQQISLYPEF--TIDEMICYYGLIYGMSLQQIKEKAEYLQ----ALLHLNHFKRK 129
G++PQ ++L F T+ + I + ++I AE H N +
Sbjct: 79 NIGYVPQDVTL---FYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQ 133
Query: 130 CG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++ V+LA LL+DP +L+LDEPTS +D + +EE L +T+
Sbjct: 134 IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD-MNSEERLKERLRQLLGDKTL 192
Query: 186 LITTH 190
+I TH
Sbjct: 193 IIITH 197
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 73.8 bits (181), Expect = 4e-15
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCIT------------------GQNVLNGGNIHLSIT 72
M ++K + +L+G SGCGK+T L I G N+L NI++ +
Sbjct: 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL-DSNINV-VN 99
Query: 73 SKKQLGFMPQQISLYPEF---TIDEMICYYGLIYGMSLQQIKEKAEYLQALLH--LNHFK 127
++++G + Q+ + +P+ I + Y G L +I E++ AL +
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SLSGGQQ+R+ +A TL P +L+LDEP S +DP+ +I + L E +I+I
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSIII 218
Query: 188 TTHYIDEA 195
TH + +A
Sbjct: 219 VTHNMQQA 226
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 72.2 bits (178), Expect = 5e-15
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 41 LLGASGCGKTTLLSCI-------TGQNVLNGGNIHLS--ITSKKQLGFMPQQISLYPEFT 91
L G +G GKTTLL I G L+GG+I + LG + ++ P T
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG---HRNAMKPALT 89
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEY--LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
+ E + ++ G I E L L HL G LS GQ+RRV+LA L+
Sbjct: 90 VAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALARLLVS 144
Query: 150 DPELLILDEPTSGIDP----VIAEEIWNHLLYLAESGRTILITTHY---IDEAKKSHM 200
+ + ILDEPT+ +D + AE I HL G ++ TH + A++ +
Sbjct: 145 NRPIWILDEPTAALDAAAVALFAELIRAHL----AQGGIVIAATHIPLGLPGARELDL 198
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 72.6 bits (178), Expect = 5e-15
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI----------TGQNVLNGGNIHLSITSK 74
+L + T+ K I +L+G SGCGK+TLLS + TG+ LN + + ++
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 75 KQLGFMPQQISLYPEFTIDEMICYY--GLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGS 132
+Q+G + Q L+P ++ + + + + G + + A L F + +
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA--FHQDPAT 134
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGGQ+ RV+L LL P+ L+LDEP S +D
Sbjct: 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 72.7 bits (179), Expect = 6e-15
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 23/193 (11%)
Query: 21 KLPYVLDKLCM----TVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHL 69
+ ++ L M TV++ ++LG SG GK+TLL+ I +G LNG +
Sbjct: 6 DITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT 65
Query: 70 SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL---QQIKEKAEYLQALLHLNHF 126
+ S++ + + Q+ +L+ T+ + I GL G+ L Q+ K A Q + +
Sbjct: 66 TPPSRRPVSMLFQENNLFSHLTVAQNIGL-GLNPGLKLNAAQREKLHAIARQMGIE-DLL 123
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR--- 183
R G LSGGQ++RV+LA L+ + +L+LDEP S +DP + +E+ L +++ +
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM---LTLVSQVCQERQ 180
Query: 184 -TILITTHYIDEA 195
T+L+ +H +++A
Sbjct: 181 LTLLMVSHSLEDA 193
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 73.1 bits (179), Expect = 6e-15
Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 28/207 (13%)
Query: 8 AIRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-- 64
AI+V N ++ + K +L+ + M + +S + +++G SGCGK+T L C+ N L
Sbjct: 7 AIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 65 ---GNIHL---SITSKK-QLGFMPQQISL-YPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
G + +I ++ L + +Q+S+ +P+ + M Y + YG+ + + K E
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 117 -------LQALLHLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165
L+ + K K LSGGQQ+R+ +A L P++L++DEP G+DP
Sbjct: 124 DDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 166 VIAEEIWNHLLY--LAESGRTILITTH 190
+ + ++ L+ S T++I +H
Sbjct: 184 IASMKV-ESLIQSLRLRSELTMVIVSH 209
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 73.2 bits (180), Expect = 6e-15
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 38/212 (17%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS----ITSKKQ 76
+ + T+ + +G SGCGK+T L C +TG+ L+G +I+ + + +
Sbjct: 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRAR 101
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMS-----LQQIKEKAEYLQALLHLNHFKRKCG 131
+G + Q+ + +P+ +I E + Y I+G++ L +I E + L+ K +
Sbjct: 102 VGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETS--LRKAGLWEEVKDRLH 158
Query: 132 ----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA----EEIWNHLLYLAESGR 183
LSGGQQ+R+ +A + PE++++DEP S +DP IA EE+ + L
Sbjct: 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP-IATAKVEELIDEL----RQNY 213
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
TI+I TH + +A + S G L+E
Sbjct: 214 TIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 74.6 bits (184), Expect = 8e-15
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 85 SLYPEFTIDEMICYYGLI--YGMSLQQIKEKAEYLQALLHLNHFKRKCGS----LSGGQQ 138
SL P TI + + L G+S + +A L L+ + +++ + LSGGQ+
Sbjct: 105 SLNPLHTIGKQL-AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK 197
+RV +A+ L ++P+LLI DEPT+ +D + +I + L L AE G IL TH + +K
Sbjct: 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK 223
Query: 198 -SHMIGLMRKGILLEESPPKVLLE 220
+ + +M+ G ++E + L
Sbjct: 224 FADRVYVMQHGEIVETGTTETLFA 247
Score = 55.7 bits (135), Expect = 1e-08
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTL------LSCITGQNVLNGGNIH-------LS 70
+D + +T+++ L+G SG GK+TL L G+ +G +I
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRP 360
Query: 71 ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-------- 122
+ + Q+ F SL P T+ ++I ++ L E+ + + L
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSA-AERDQRVIEALEEVGLDPAT 419
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AES 181
N + + SGGQ++R+++A L+ PEL++LDEPTS +D + ++ + L L +
Sbjct: 420 RNRYPHE---FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH 476
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G + L +H + + H + +MR G ++E+ P + +
Sbjct: 477 GLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 72.6 bits (178), Expect = 8e-15
Identities = 58/216 (26%), Positives = 111/216 (51%), Gaps = 36/216 (16%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLSIT 72
+L + + + K + + +G SGCGK+T L C + G+ ++G +++ T
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 73 S----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-----LQQIKEKA-------EY 116
+ + ++G + Q+ + +P+ +I + + Y ++G++ L +I EK+ E
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L + F+ LSGGQQ+R+ +A + P +L++DEP S +DPV I N L+
Sbjct: 139 LGDRLKDSAFE-----LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LI 192
Query: 177 YLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211
+ TI++ TH + +AKK S + + G ++E
Sbjct: 193 QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 72.6 bits (178), Expect = 9e-15
Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 40/204 (19%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSI 71
+ L + + + ++ + +++G SGCGK+T + + TG+ + NI
Sbjct: 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97
Query: 72 TSKKQL----GFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKA-------EY 116
S ++L G + Q+ + +P+ +I + + Y I+G+ L +I EK+ +
Sbjct: 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA---EEIWN 173
L+ LH N + LSGGQQ+R+ +A L +P+++++DEPTS +DP+ EE+
Sbjct: 157 LKDRLHDNAY-----GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 174 HLLYLAESGRTILITTHYIDEAKK 197
L + +I+I TH + +A +
Sbjct: 212 EL----KKDYSIIIVTHNMQQAAR 231
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 71.8 bits (176), Expect = 1e-14
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS------KK 75
+L+ + ++V+ ++ G SGCGK+TLL + G + +++ ++
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG 135
Q+ + Q +L+ + D +I + I + + L + + LSG
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPW-QIRNRRPDRAAALDLLARFALPDSILTKNITELSG 136
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTHYIDE 194
G+++R++L L P++L+LDE TS +D I + Y+ E +L TH D+
Sbjct: 137 GEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196
Query: 195 A 195
A
Sbjct: 197 A 197
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 72.5 bits (178), Expect = 1e-14
Identities = 55/227 (24%), Positives = 113/227 (49%), Gaps = 15/227 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I VE+ + R+ L L +++ + + +LLG +G GK+TLL + G + G +
Sbjct: 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 68 HLS-----------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+ + SK L F ++ T+ + + + + G+ +++ + E
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEE 121
Query: 117 LQALLHLNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+ + F+ K LS GQ++RV++A L DP++++LDEP + +DP E + L
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L G+T+++ TH +D A + + + ++++G +L E +L ++
Sbjct: 182 DRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 71.0 bits (175), Expect = 1e-14
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 44/213 (20%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---------GQNVLNGGNI-HLSITSK 74
+L + +T++K +++L+G +G GK+TL I G+ + G +I L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 75 KQLG-FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-S 132
+LG F+ Q YP I G+ F R
Sbjct: 75 ARLGIFLAFQ---YPP-----------EIPGVKN----------------ADFLRYVNEG 104
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY- 191
SGG+++R + LL +P+L ILDEP SG+D + + L E G+++LI THY
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 192 -IDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
+ + K + ++ G +++ ++ LE
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 73.2 bits (180), Expect = 1e-14
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQL 77
VL+ + + + + +LLG SG GKTTLL I G G+I T +++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSL---------QQIKEKAEYLQALLHLNHF-K 127
GF+ Q +L+ T+ + I + G+++ IK K L ++ L H
Sbjct: 77 GFVFQHYALFRHMTVFDNIAF-----GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD 131
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TIL 186
R LSGGQ++RV+LA L +P++L+LDEP +D + +E+ L L E + T +
Sbjct: 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSV 191
Query: 187 ITTHYIDEA 195
TH +EA
Sbjct: 192 FVTHDQEEA 200
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 72.6 bits (178), Expect = 1e-14
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 38/207 (18%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L + M + + ++ +L+G SGCGK+T L C I G L+G +I+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICY---------YGLIYGMSLQQIKEKAEYL--- 117
+ +K++G + Q + +P+ +I E I Y GL+ + + K+ + L
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 118 ---QALLHLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
QA L + + LSGGQQ+R+ +A L DPE++++DEP S +DP+ +
Sbjct: 180 SLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSK 238
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKK 197
I + + LAE T+++ TH + +A +
Sbjct: 239 IEDLIEELAEE-YTVVVVTHNMQQAAR 264
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 71.2 bits (175), Expect = 3e-14
Identities = 61/235 (25%), Positives = 121/235 (51%), Gaps = 16/235 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I +EN K + +K+ VLD + + + K I S++G +G GK+TLLS + +G+
Sbjct: 2 ITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 62 LNGGNIHLSITSK--KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G + + + + K+L + Q+ + T+ +++ + Y +++ +A
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119
Query: 120 L--LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
+ LHL R LSGGQ++R +A+ L D + ++LDEP + +D + +I L
Sbjct: 120 IEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 177 YLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
LA E G+TI++ H I+ A S I ++ G ++++ P +++ + + D
Sbjct: 180 RLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYD 234
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 71.2 bits (174), Expect = 3e-14
Identities = 56/213 (26%), Positives = 107/213 (50%), Gaps = 28/213 (13%)
Query: 8 AIRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-- 64
AI+V++ ++ ++SK ++ + M + ++ + +++G SGCGK+T + + + L G
Sbjct: 7 AIKVKDLSFYYNTSK---AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63
Query: 65 ----------GNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYG----MS 106
NI+ + ++Q+G + Q+ + +P +I E + Y I
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQAD 122
Query: 107 LQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
L +I E A AL + + LSGGQQ+R+ +A L P++L++DEP S +D
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
P+ ++ L++ S TI I TH + +A +
Sbjct: 183 PIATMKV-EELIHSLRSELTIAIVTHNMQQATR 214
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 70.8 bits (174), Expect = 3e-14
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SIT--SKKQLG- 78
L+ L + + + +++G++G GK+TLL+ I G G I + +T S +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 79 -----FMPQQISLYPEFTIDE-MICYY--GLIYGMSLQQIKEKAEYLQALLH------LN 124
F PE TI+E + G G+S + + + L N
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 125 HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGR 183
+ G LSGGQ++ +SL + LH P++L+LDE T+ +DP AE + + E
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 184 TILITTHYIDEA 195
T L+ TH +++A
Sbjct: 201 TTLMVTHNMEDA 212
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 70.2 bits (172), Expect = 3e-14
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS----------KKQL 77
+ V++ +L+G SG GK+TLL+ + G + + G + L + K +
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHV 90
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL----HLNHFKRKCGSL 133
GF+ Q L P E + L+ G S +Q + A+ L L L+H L
Sbjct: 91 GFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---AQL 147
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYI 192
SGG+Q+RV+LA P++L DEPT +D ++I + L L E G T+++ TH +
Sbjct: 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207
Query: 193 DEAKKSHMIGLMRKGILLEES 213
A + + G L EE+
Sbjct: 208 QLAARCDRRLRLVNGQLQEEA 228
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 71.0 bits (174), Expect = 4e-14
Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 24/188 (12%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS----ITSK 74
+ + K+ I + +G SGCGK+T+L C + G+ +G N++ + +
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLH---LNHFKRK 129
+++G + Q+ + +P+ +I + I Y I G + ++ E++ QA L + K+
Sbjct: 91 RRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERS-LRQAALWDEVKDKLKQS 148
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
SLSGGQQ+R+ +A + PE++++DEP S +DP+ I + L E TI+I T
Sbjct: 149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVT 207
Query: 190 HYIDEAKK 197
H + +A +
Sbjct: 208 HNMQQAAR 215
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 70.6 bits (174), Expect = 4e-14
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ N R + +LD + +T++ + ++LG +G GK+TLL ++G+ + G +
Sbjct: 2 MLEARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 68 HL---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-KAEYL 117
L + ++ +PQ SL FT++E++ +G+S + A L
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 118 QA--LLHLNHFKRKCGSLSGGQQRRVSLAITLL------HDPELLILDEPTSGIDP 165
L HL R LSGG+Q+RV LA L P L+LDEPTS +D
Sbjct: 120 AQVDLAHLAG--RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 70.4 bits (172), Expect = 6e-14
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 32/228 (14%)
Query: 9 IRVENAYKR-HSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--------- 58
IRVE K + + + +D + + + +LLG SG GK+TLL ++G
Sbjct: 5 IRVEKLAKTFNQHQALHAVD---LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAG 61
Query: 59 -------QNVLNGGNIHLSI-TSKKQLGFMPQQISLYPEFTIDEMICYYGL----IYGMS 106
+ V G + I S+ G++ QQ +L ++ E + L +
Sbjct: 62 SHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTC 121
Query: 107 LQQI--KEKAEYLQAL--LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
++K LQAL + + HF ++ +LSGGQQ+RV++A L+ ++++ DEP +
Sbjct: 122 FSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIA 181
Query: 162 GIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEA-KKSHMIGLMRKG 207
+DP A + + L + ++ G T+++T H +D A + I +R+G
Sbjct: 182 SLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 69.7 bits (171), Expect = 8e-14
Identities = 47/195 (24%), Positives = 98/195 (50%), Gaps = 39/195 (20%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIHLS----ITSK 74
+ ++ ++ + +G SGCGK+T+L + G+ +L+G +++ + +
Sbjct: 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-------YLQALLHLNHFK 127
+ +G + Q+ + +P +I + + + G+ L ++ K + L+ N K
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNV-----VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 128 ----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV---IAEEIWNHLLYLAE 180
+ G LSGGQQ+R+ +A + +P++L++DEP S +DP+ E++ N L +
Sbjct: 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL----K 195
Query: 181 SGRTILITTHYIDEA 195
TI+I TH + +A
Sbjct: 196 QDYTIVIVTHNMQQA 210
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 69.7 bits (170), Expect = 8e-14
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 29/227 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-------------ITGQNVLNGGNIHL-- 69
+L + + + ++I+ ++G SG GK+TLL + G+ + G +I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 70 SITSKKQLGFMPQQISLYPEFTIDEMICY----YGLIYGMSLQQIKEKAEYLQALLHLNH 125
+I +K++G + QQ + +P +I + I Y +G+ +++I E+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 126 --FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
LSGGQQ+R+++A L P++L++DEPTS ID V ++ I + L
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLE--------ESPPKVLLEKY 222
++++ + A+ + + + G L+E SP L EKY
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKY 251
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 69.7 bits (171), Expect = 1e-13
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 41/230 (17%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSITSKKQL- 77
+ + K+ + + +G SGCGK+TLL G+ +L+G NI +T K+ +
Sbjct: 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI---LTPKQDIA 90
Query: 78 ------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-------LQALLHLN 124
G + Q+ + +P M Y + +G+ L + +AE L N
Sbjct: 91 LLRAKVGMVFQKPTPFP------MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 125 HFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
K K SLSGGQQ+R+ +A + PE+L+LDEP S +DP+ I L+ +
Sbjct: 145 EVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI-EELITELK 203
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
T++I TH + +A + S M G L+E + K K ED
Sbjct: 204 QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTED 253
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 69.3 bits (169), Expect = 1e-13
Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQN-VLNG----GNIHL-----------SITSKKQ 76
++K+ I +G SGCGK+T+L + N ++ G G++H + ++
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK----EKAEY-LQALLHLNHFKRKCG 131
+G + QQ + + M + + +G+ L + K ++ ++ LQ + K K
Sbjct: 91 IGMVFQQPNPF------SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK 144
Query: 132 ----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SLSGGQQ+R+ +A + +PE+L+LDEP S +DP+ + ++ L + TI +
Sbjct: 145 VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIAL 203
Query: 188 TTHYIDEAKK 197
TH + +A +
Sbjct: 204 VTHNMQQAIR 213
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 71.1 bits (174), Expect = 1e-13
Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 16/223 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+I V NA + LP L+ + ++ + + +++G GCGK++LLS + + G++
Sbjct: 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
H+ K + ++PQQ + + ++ E I + + QQ+ E L L L
Sbjct: 696 HM----KGSVAYVPQQAWIQND-SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGD 750
Query: 128 R-----KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL----YL 178
R K +LSGGQ++RVSLA + + ++ + D+P S +D + + I+ H++ L
Sbjct: 751 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+T ++ TH I + +I +M G + E + LL++
Sbjct: 811 K--NKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851
Score = 38.4 bits (89), Expect = 0.004
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 10 RVE--NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
RVE N R+ L VL + +T+ ++G +G GK++L + G+
Sbjct: 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343
Query: 61 VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL----QQIKEKAEY 116
+++G NI +K L + +I++ P+ + + + G + M+L Q E+ +
Sbjct: 1344 IIDGLNI-----AKIGLHDLRFKITIIPQ----DPVLFSGSLR-MNLDPFSQYSDEEVWW 1393
Query: 117 LQALLHLNHF--------KRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
L HL F +C +LS GQ++ V LA LL ++L+LDE T+ +D
Sbjct: 1394 ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 69.9 bits (171), Expect = 2e-13
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 46/236 (19%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---------SITSKK 75
VLD + ++V++ ++ L+G +G GKTTLL I G G + + + + +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 76 QLGFMPQQISLYPEFTIDEMI-----CYYGLIYGM------SLQQIKEKAEYLQALLHLN 124
++ +PQ SL EF + +++ + ++++ E+ Q
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ------ 131
Query: 125 HF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY------ 177
F R SLSGG+++RV LA L +L+LDEPT+ +D NH +
Sbjct: 132 -FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI-------NHQVRTLELVR 183
Query: 178 -LAESGRTILITTHYID-EAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
L + G+T + H +D A+ + L+ G + PP +L +L F
Sbjct: 184 RLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL---TADTLRAAF 236
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 69.0 bits (168), Expect = 2e-13
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 20/210 (9%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNVLNGGNIHLSITS----KKQ 76
L+ + ++ K S++G +G GK+T I G + + L+ + +++
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ------QIKEKAEYLQALLHLNHFKRKC 130
+G + Q P+ + +GM Q IK E L A+ L+ R+
Sbjct: 83 IGMVFQN----PDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP 138
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TILITT 189
LSGGQ++RV++A + PE++ILDE TS +DP +EI + + E + T+L T
Sbjct: 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSIT 198
Query: 190 HYIDEAKKSHMIGLMRKGILLEESPPKVLL 219
H +DEA S I +M+ G +++E+ P L
Sbjct: 199 HDLDEAASSDRILVMKAGEIIKEAAPSELF 228
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 68.5 bits (168), Expect = 3e-13
Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60
+ K I+VEN + + L + + + ++LG +G GK+T+ +TG
Sbjct: 1 IKNKSV-MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 61 VLNGGNIHL--SITSKKQLGFMPQQISLY---P--EF---TIDEMICYYGLIYGM-SLQQ 109
G I + SK+ L + ++I + P +F T+++ I + GL ++
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF-GLENKKVPPKK 118
Query: 110 IKEK-AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+K+ + + + ++ ++ +LSGGQ++RV++A L +PE++I DE TS +DP
Sbjct: 119 MKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 169 EEIWNHLLYLAESGRTILIT-THYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
EI ++ L ++ + LI+ TH +DEA + + + +G L+ + PK +L
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 67.6 bits (166), Expect = 3e-13
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 9/193 (4%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSITSKKQLGFMP 81
+ L + V + L+G +G GK+TLL + G + G + ++S LG
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG--- 92
Query: 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRR 140
PE T E I G + G+S ++I EK + + L + + S G + R
Sbjct: 93 --GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKAR 150
Query: 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SH 199
++ AI +P++L++DE + D E+ L L + G+T+++ +H K+
Sbjct: 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210
Query: 200 MIGLMRKGILLEE 212
++ KG + +
Sbjct: 211 RALVLEKGKIRFD 223
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 68.5 bits (167), Expect = 3e-13
Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 21/235 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
IR+EN + P L+ + + ++K ++G +G GK+TL + G G +
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 69 LSITS----------KKQLGFMPQQISLYPEF-----TIDEMICYYGLIYGMSLQQIKEK 113
+S +K +G + Q PE T++E + + + +I+++
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQN----PETQFVGRTVEEDLAFGPENLCLPPIEIRKR 116
Query: 114 AEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
+ A + L ++ R +LSGGQ + V+LA L +PE LI DE TS +DP +
Sbjct: 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 173 NHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSL 227
+ L E G+TI+ TH ++E + I +M +G ++ E P+ +L ++++L
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 69.4 bits (170), Expect = 3e-13
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 40/194 (20%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----SITS-----KKQLGFMPQ 82
V + I G G G+T L++C+ G + GG I L S S KK + ++ +
Sbjct: 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345
Query: 83 ---QISLYPEFTIDEMICY------------YGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+P F+I + + GL + + Q+ E L AL
Sbjct: 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL------- 398
Query: 128 RKCGS-------LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
KC S LSGG Q++V ++ L PE++I DEPT GID EI+ + LA+
Sbjct: 399 -KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 181 SGRTILITTHYIDE 194
G+ IL+ + + E
Sbjct: 458 DGKVILMVSSELPE 471
Score = 56.7 bits (137), Expect = 6e-09
Identities = 46/191 (24%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL-------- 77
L + +TV I++LLG +G GK+TL+ ++G + G I ++ + +L
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 78 --GFMPQQISLYPEFTIDEMICYYGL-----IYGMSLQQIKEKAEYLQALLHLNHFKR-- 128
G + Q++S+ E T+ E + Y G + G+++ +E +L K
Sbjct: 81 GIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 129 --KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
K +LS ++ + +A TL+ D +++I+DEPTS + + ++ + L + G I+
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 187 ITTHYIDEAKK 197
+H + E ++
Sbjct: 200 YISHKLAEIRR 210
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 68.2 bits (167), Expect = 3e-13
Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 35/227 (15%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLSITS----K 74
M +K+ I +L+G SG GK+T L +TGQ + G +I+ + +
Sbjct: 41 MQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQAL-------LHL 123
K +G + Q+ + + + +I E I + G+ L +I E + AL LH
Sbjct: 101 KHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK 159
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ +LSGGQQ+R+ +A + P++L++DEP S +DP+ ++ + L ++
Sbjct: 160 SAL-----TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-Y 213
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TI+I TH + +A + S G L+E + + ++S D
Sbjct: 214 TIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTND 260
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 68.7 bits (169), Expect = 3e-13
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 9 IRVENAYKRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--- 63
I ++N K + L+ + + + I+ ++GASG GK+TL+ CI N+L
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCI---NLLERPT 58
Query: 64 GGNIH-----LSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111
G + L+ S+K+L G + Q +L T+ + + + G +IK
Sbjct: 59 SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK 118
Query: 112 EKAEYLQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ L L+ L+ + + LSGGQ++RV++A L +P++L+ DE TS +DP
Sbjct: 119 ARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 171 IWNHLLYLAESGR----TILITTHYID 193
I L L + R TI++ TH +D
Sbjct: 179 I---LELLKDINRELGLTIVLITHEMD 202
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 66.4 bits (163), Expect = 5e-13
Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86
L T+ + + G +G GKT+LL + G + G + ++ Q L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 87 Y--------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK---CGSLSG 135
Y E T E + +Y L + +AL + + LS
Sbjct: 78 YLGHQPGIKTELTALENLRFY-----QRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSA 132
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
GQQRRV+LA L L ILDEP + ID + L AE G +++TTH
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 66.7 bits (163), Expect = 7e-13
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 14 AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS--- 70
AY L VL + T+ + +L+G SG GK+T+++ + GG + L
Sbjct: 20 AYPTRPDTL--VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP 77
Query: 71 ITSKK------QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN 124
I+ + ++ + Q+ L+ ++ + I Y GL S + +KE A+ A ++
Sbjct: 78 ISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-GL-QSCSFECVKEAAQKAHAHSFIS 134
Query: 125 HFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
K LSGGQ++RV++A L+ +P++LILDE TS +D +E+ L
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD-AESEQQVQQAL 193
Query: 177 YLAESGRTILITTHYIDEAKKSHMIGLMRKG 207
Y RT+L+ H + +++ I ++ G
Sbjct: 194 YDWPERRTVLVIAHRLSTVERADQILVLDGG 224
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 67.4 bits (165), Expect = 7e-13
Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 9 IRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V+N +K + Y L+ + V++ S++G +G GK+T + I G G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 68 -----HLSITS----KKQLGFMPQQISLYP--EF---TIDEMICYYGLI-YGMSLQQIKE 112
L+ + + ++G + Q P +F T+++ + + GL G+ +++KE
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQN----PDNQFVGATVEDDVAF-GLENKGIPHEEMKE 119
Query: 113 KAEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ L+ + FK R+ LSGGQ++RV++A + P+++ILDE TS +DP E+
Sbjct: 120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 172 WNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
+ + + T++ TH +DE S + +M+ G + S P+ L + N
Sbjct: 180 IKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 65.6 bits (160), Expect = 9e-13
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 25/180 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
+ L T+ + G +G GKTTLL + G + G + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-----------LLNGGP 63
Query: 85 SLYPEFTIDEMICYYGLIYGMS-----------LQQIKEKAEYLQAL--LHLNHFK-RKC 130
+ +I + Y G G+ + +AL + LN F+ R
Sbjct: 64 LDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPV 123
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LS GQQRRV+LA LL L ILDEPT+ +D + G +++TTH
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 66.7 bits (163), Expect = 1e-12
Identities = 51/185 (27%), Positives = 102/185 (55%), Gaps = 26/185 (14%)
Query: 33 VQKSTIYSLLGASGCGKTTLL-----------SC-ITGQNVLNGGNIHLS----ITSKKQ 76
+ + + +L+G SGCGK+T+L C + G+ + +G +++ + +++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMS--LQQIKEKAEYLQALLHLNHFKRKCG--- 131
+G + QQ + +P+ +I E I + I G + + ++ E++ A+ + K K
Sbjct: 96 IGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVW--DECKDKLNESG 152
Query: 132 -SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
SLSGGQQ+R+ +A T+ +PE++++DEP S +DP+ +I + L ++ TI+I TH
Sbjct: 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTH 211
Query: 191 YIDEA 195
+ +A
Sbjct: 212 NMQQA 216
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 67.2 bits (165), Expect = 1e-12
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 26 LDKLCMTVQ----KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS----------- 70
L LC+TV I ++ G SG GKT+L++ I+G G I L+
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK 127
K+++G++ Q L+P + + L YGM+ + + + + + ALL +
Sbjct: 70 CLPPEKRRIGYVFQDARLFPHYKVRG-----NLRYGMA-KSMVAQFDKIVALLGIEPLLD 123
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT-IL 186
R GSLSGG+++RV++ LL PELL++DEP + +D E+ +L LA IL
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 187 ITTHYIDE 194
+H +DE
Sbjct: 184 YVSHSLDE 191
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 66.4 bits (162), Expect = 1e-12
Identities = 56/216 (25%), Positives = 111/216 (51%), Gaps = 26/216 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNVLNG-----GNIHLSIT 72
L+ + +++ +++G +G GK+TL L +G ++ G NI
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR---E 75
Query: 73 SKKQLGFMPQ----QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK- 127
+K +G + Q QI P T+++ I + + G+ + + + +L L +
Sbjct: 76 VRKFVGLVFQNPDDQI-FSP--TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD 132
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTIL 186
R LSGG+++RV++A + +P++L+LDEPT+G+DP +E+ + L L E+ G T++
Sbjct: 133 RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVI 192
Query: 187 ITTHYID-EAKKSHMIGLMRKG-ILLEESPPKVLLE 220
+TH +D + + I +M KG I+ + ++ L+
Sbjct: 193 FSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 66.6 bits (162), Expect = 1e-12
Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT----SKKQLGFM 80
VL L + S + L+GA+GCGK+TL ++G G + SK+ L +
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 81 PQQISLY---PE----FT-IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK-CG 131
QQ++ PE +T ID I + G+ +I + + L+ HF+ +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
LS GQ++RV++A L+ L+LDEPT+G+DP ++ + + G ++I++H
Sbjct: 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195
Query: 192 IDEAKK-SHMIGLMRKGILLEESPP 215
ID + S + ++R+G +L P
Sbjct: 196 IDLIYEISDAVYVLRQGQILTHGAP 220
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 66.3 bits (162), Expect = 1e-12
Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I +N ++ S + L + + K S++G +G GK+T+ + G + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 68 --HLSITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI---KEKAEY 116
+ +IT +K +G + Q P+ I Y + +G+ + +
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQN----PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 117 LQALLHLNHFKR---KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+AL ++ +R + +LSGGQ++RV++A L +P ++ILDE TS +DP + + +
Sbjct: 124 SEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD 183
Query: 174 HLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+ + +E TI+ TH + EA ++ + +M KG + +E P + + + L + L
Sbjct: 184 LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH--AEELTRIGL 241
Query: 233 LL 234
L
Sbjct: 242 DL 243
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 65.9 bits (161), Expect = 1e-12
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 20/147 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++ I +LLG +G GK+TL+ + G + G I + K ++G++PQ++
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN--GKLRIGYVPQKL 76
Query: 85 SLYPE--FTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-----LHLNHFKRKCGSLSGGQ 137
L T++ + L+ +K + L AL HL + LSGG+
Sbjct: 77 YLDTTLPLTVNRF---------LRLRPGTKKEDILPALKRVQAGHLIDAPMQ--KLSGGE 125
Query: 138 QRRVSLAITLLHDPELLILDEPTSGID 164
+RV LA LL+ P+LL+LDEPT G+D
Sbjct: 126 TQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 65.6 bits (160), Expect = 3e-12
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 30/219 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSK--- 74
+L L +T + L+G +G GK+TLL + G+ +L+ + S +SK
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE-SWSSKAFA 84
Query: 75 KQLGFMPQQISLYPEFTIDEMIC-----YYGLIYGMSLQQIKEKAEYLQALLHLNHF-KR 128
+++ ++PQQ+ T+ E++ ++G + G +EK E +L+ L R
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL-GRFGAADREKVEEAISLVGLKPLAHR 143
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-----ESGR 183
SLSGG+++R +A+ + D L+LDEPTS +D IA ++ +L L E G
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD--IAHQV--DVLALVHRLSQERGL 199
Query: 184 TILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLE 220
T++ H I+ A + +++ L R G ++ + P L+
Sbjct: 200 TVIAVLHDINMAARYCDYLVAL-RGGEMIAQGTPAELMR 237
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 66.1 bits (162), Expect = 5e-12
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 15/162 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN K KL ++D L + I ++G +G GK+TL ITGQ + G I
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
Query: 69 LSITSKKQLGFMPQQI-SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+ T K L ++ Q +L P T+ E I I + +++ +A Y+ +FK
Sbjct: 381 IGETVK--LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA-YVGRF----NFK 433
Query: 128 -----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+K G LSGG++ RV LA TL +L+LDEPT+ +D
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
Score = 52.2 bits (126), Expect = 2e-07
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLL--YLAESGRTILITT 189
LSGG++RRV+L LL P++L+LDEPT+ +D AE + W L +L E T++ T
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAW---LEQHLQEYPGTVVAVT 215
Query: 190 H 190
H
Sbjct: 216 H 216
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 64.5 bits (157), Expect = 5e-12
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-------QNVLNGGNIH-LSITSK-K 75
++D + +T ++ LLG +G GK+TLL + G L G ++H LS ++ +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 76 QLGFMPQQISLYPEFTIDEM-----ICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRK 129
++ + Q T+ ++ I + L G S L A L+H R
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRAL-ARTELSHLADRD 134
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
+LSGG+++RV +A L +P+LL+LDEPT+ +D E + LA +G T++
Sbjct: 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAAL 194
Query: 190 HYIDEAKK--SHMIGLMRKGILLEESPPKVLL 219
H ++ A H++ ++ G ++ PP+ +L
Sbjct: 195 HDLNLAASYCDHVV-VLDGGRVVAAGPPREVL 225
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 66.0 bits (162), Expect = 6e-12
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 26/190 (13%)
Query: 41 LLGASGCGKTTLLSCITG----QNVL--NGGNIH-LSITS-KKQLGFMPQQISLYPEFTI 92
L+G SG GKT+LL+ + G Q L NG + L S +K L ++ Q L P T+
Sbjct: 381 LVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-PHGTL 439
Query: 93 DEMICYYGLIYG---MSLQQIK---EKA---EYLQALLH-LNH-FKRKCGSLSGGQQRRV 141
+ + + G S +Q++ E A E+L L L+ + LS GQ +R+
Sbjct: 440 RDNV-----LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201
+LA LL +LL+LDEPT+ +D +E++ L A +T L+ TH +++ + I
Sbjct: 495 ALARALLQPCQLLLLDEPTASLD-AHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQI 553
Query: 202 GLMRKGILLE 211
+M+ G +++
Sbjct: 554 WVMQDGQIVQ 563
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 65.8 bits (161), Expect = 7e-12
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ------- 76
+L + +Q ++G SG GK+TL + G G++ L +Q
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409
Query: 77 --LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA---LLHL-NHFKRKC 130
+G++PQ + L+ TI E I +G +++ E A +L L + +
Sbjct: 410 RHIGYLPQDVELFDG-TIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 131 G----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
G +LSGGQ++R++LA L DP L++LDEP S +D + +L G T++
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVV 526
Query: 187 ITTH 190
+ H
Sbjct: 527 VIAH 530
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 65.1 bits (159), Expect = 1e-11
Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITS--KK 75
LD L +TV+ +L+G SG GK+TL + +G+ +L+G ++ + +
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQA---LLHL-----N 124
++ +PQ L F M + YG + ++++ A A + L
Sbjct: 415 RMALVPQDPVL---FAASVM---ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT 468
Query: 125 HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
+ + +LSGGQ++R+++A +L D +L+LDE TS +D +E++ L GRT
Sbjct: 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD-AESEQLVQQALETLMKGRT 527
Query: 185 ILITTHYIDEAKKSHMIGLMRKGILLEE 212
LI H + K+ I +M +G ++ +
Sbjct: 528 TLIIAHRLATVLKADRIVVMDQGRIVAQ 555
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 63.5 bits (155), Expect = 1e-11
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 37/186 (19%)
Query: 43 GASGCGKTTLLSCITG-----QNVLNGGNIHLSITSKKQLGFMPQQISLYP-EFTIDEMI 96
G SGCGK+TLL + G L G L+ +++ M Q L P + ID +
Sbjct: 45 GRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNV- 102
Query: 97 CYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKC---GSLSGGQQRRVSLAITLLHDPEL 153
G+ L+ + + LQAL + R +LSGGQ++RV+LA L+H P L
Sbjct: 103 -------GLGLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154
Query: 154 LILDEPTSGIDPV-------IAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206
L+LDEP +D + + E +W + G T+L+ TH + EA + + +
Sbjct: 155 LLLDEPLGALDALTRIEMQDLIESLWQ------QHGFTVLLVTHDVSEA-----VAMADR 203
Query: 207 GILLEE 212
+L+EE
Sbjct: 204 VLLIEE 209
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 63.1 bits (154), Expect = 2e-11
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 35/195 (17%)
Query: 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP----- 81
+ + + V++ I SL+G +G GKTT+ +C+TG GG I L + + +P
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR---GQHIEGLPGHQIA 78
Query: 82 --------QQISLYPEFTIDE--MICYY-----GLIYGM--------SLQQIKEKAEY-L 117
Q + L+ E T+ E ++ + GL G+ + + ++A L
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 118 QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
+ + L H R+ G+L+ GQQRR+ +A ++ PE+L+LDEP +G++P +E+ + L+
Sbjct: 139 ERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL-DELIA 197
Query: 178 L--AESGRTILITTH 190
E T+L+ H
Sbjct: 198 ELRNEHNVTVLLIEH 212
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 63.0 bits (154), Expect = 2e-11
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 37/228 (16%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSKKQL---------G 78
L V+ I L+G +G GK+TLL+ + G +L G G+I + +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG--LLPGSGSIQFAGQPLEAWSAAELARHRA 72
Query: 79 FMPQQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHL-NHFKRKCGSLS 134
++ QQ + P F + + Y ++ + + + L L + R LS
Sbjct: 73 YLSQQQT--PPFAMP--VFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLS 128
Query: 135 GGQQRRVSLAITLLH-----DPE--LLILDEPTSGIDPVIAEEIWNHLLY--LAESGRTI 185
GG+ +RV LA +L +P LL+LDEP + +D +A++ L L + G +
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALDRLLSELCQQGIAV 186
Query: 186 LITTHYIDE-AKKSHMIGLMRKGILLEESPPK-VLLEKYNMKSLEDVF 231
++++H ++ + + + L+++G LL VL + L VF
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN----LAQVF 230
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 61.8 bits (150), Expect = 2e-11
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI-----HLSITSKKQLGF 79
L L +T S I + GA+GCGK++LL I G + GNI +++ +K +
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK------RKCGSL 133
+ + L E T+ E + ++ IY AE L A +H +FK KC SL
Sbjct: 75 IGHNLGLKLEMTVFENLKFWSEIY--------NSAETLYAAIH--YFKLHDLLDEKCYSL 124
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
S G Q+ V++A + +L +LDE + + + + N ++ A SG +L+++H
Sbjct: 125 SSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 62.9 bits (153), Expect = 2e-11
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKK- 75
VL + +++++ LLG SGCGK+TL + G G + L ++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 76 -----QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL----LHLNHF 126
QL F ++ P T+ ++I L + SL + ++KA + L L
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGE-PLRHLTSLDESEQKARIAELLDMVGLRSEDA 144
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTI 185
+ LSGGQ +R+++A L P+L++LDE S +D V+ I L L G
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAY 204
Query: 186 LITTHYIDEAKK-SHMIGLMRKGILLEESP 214
L TH + + + +M KG ++EE
Sbjct: 205 LFITHDLRLVQSFCQRVAVMDKGQIVEECD 234
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 62.9 bits (153), Expect = 2e-11
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ES 181
L++ + +LSGGQ++RV++A L +P+++ILDE TS +DP E+I + L ++
Sbjct: 134 LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN 193
Query: 182 GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
T++ TH IDEA + + ++ G LL + P + K M
Sbjct: 194 NLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 61.1 bits (148), Expect = 3e-11
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS--------ITSKKQ 76
+L ++ + + L G++G GKTTLL I G G I T +KQ
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSG 135
L F+ + + P T+ E C Y + + I E L L L H CG LS
Sbjct: 76 LCFVGHRSGINPYLTLREN-CLYDIHFSPGAVGITE----LCRLFSLEHLIDYPCGLLSS 130
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
GQ+R+V+L + +L +LDEP +D + I + G +L+T+H
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 61.4 bits (149), Expect = 4e-11
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITS---------KKQLGFMPQQISLYP 88
L G SG GK+TLL I G + G I S IT ++Q+G + Q L
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
Query: 89 EFTIDEMICYYGLIYGMSLQQIKEK-AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL 147
+ T+ + + +I G S I+ + + L + L+ K LSGG+Q+RV +A +
Sbjct: 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152
Query: 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
++ P +L+ DEPT +D ++E I G T+L+ TH
Sbjct: 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 63.3 bits (154), Expect = 5e-11
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 35/195 (17%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNG---GNIHLSITSKKQLGFMPQQISLY--------P 88
+L+G SG GKTTL+ + G+ G G+I +S KKQ F +IS Y P
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFPKKQETF--ARISGYCEQNDIHSP 966
Query: 89 EFTIDEMICYYGLIYGMSLQQIKEKAEY--------LQALLHLNHFKRKCGSLSG----- 135
+ T+ E LIY L+ KE ++ + L+ L++ K L G
Sbjct: 967 QVTVRE-----SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021
Query: 136 -GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY--I 192
Q++R+++A+ L+ +P ++ +DEPTSG+D A + + ++GRT++ T H I
Sbjct: 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081
Query: 193 DEAKKSHMIGLMRKG 207
D + + LM++G
Sbjct: 1082 DIFEAFDELLLMKRG 1096
Score = 27.9 bits (62), Expect = 8.6
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI---WNHLLYLAESGRTILIT 188
+SGGQ++RV+ ++ + L +DE ++G+D +I +++L E+ T+L++
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEA--TVLMS 393
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 62.6 bits (153), Expect = 5e-11
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 20/138 (14%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITSKKQLGFMP---------QQISLYP 88
L+G SGCGK+TLL + G + G I + + + P Q +LYP
Sbjct: 35 LVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-----PADRDIAMVFQNYALYP 89
Query: 89 EFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAIT 146
++ E + Y GL I GM +I+E+ +L L RK LSGGQ++RV++
Sbjct: 90 HMSVRENMAY-GLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRA 148
Query: 147 LLHDPELLILDEPTSGID 164
++ +P + + DEP S +D
Sbjct: 149 IVREPAVFLFDEPLSNLD 166
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 62.7 bits (153), Expect = 6e-11
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 22/214 (10%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH-LSITS-KKQ 76
L + + +L+G SG GK+T+ + +T G+ +L+G ++ ++ S + Q
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 77 LGFMPQQISLYPEFTIDEMICY-YGLIYGMSLQQIKEKAEYLQALLHLNHFKR------- 128
+ + Q + L+ + TI I Y Y S +QI+E A A+ +N
Sbjct: 419 VALVSQNVHLFND-TIANNIAYARTEQY--SREQIEEAARMAYAMDFINKMDNGLDTVIG 475
Query: 129 -KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
LSGGQ++R+++A LL D +LILDE TS +D I L L + RT L+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLV 534
Query: 188 TTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
H + +K+ I ++ G ++E LL +
Sbjct: 535 IAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 62.8 bits (153), Expect = 7e-11
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 37/237 (15%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLN 63
V +Y VL L T+ + +L+G SG GK+T+ + + GQ +L+
Sbjct: 484 VSFSYPNRPDVP--VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541
Query: 64 GGNI----HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
G + H + +Q+ + Q+ L+ ++ E I Y GL ++I A+ A
Sbjct: 542 GVPLVQYDHHYL--HRQVALVGQEPVLFSG-SVRENIAY-GLTD-TPDEEIMAAAK--AA 594
Query: 120 LLH------LNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
H N + + G LSGGQ++R+++A L+ P +LILDE TS +D
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC-- 652
Query: 170 EIWNHLLYLAES--GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
LL + S RT+L+ H + +++ I +++KG ++E K L+E
Sbjct: 653 ---EQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 60.5 bits (147), Expect = 8e-11
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 9 IRVENAYK-----RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
+ VE+ K + VL + +TV +L G SG GK+TLL + + +
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 64 GGNI---HLSITS--------------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106
G I H +K +G++ Q + + P + E++ L G+
Sbjct: 62 SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP 121
Query: 107 LQQIKEKAEYLQALLHLNHFKR----KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162
+ + +A L L LN +R + SGG+Q+RV++A + D +L+LDEPT+
Sbjct: 122 REAARARAREL--LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179
Query: 163 IDP 165
+D
Sbjct: 180 LDA 182
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 60.5 bits (147), Expect = 2e-10
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 47/201 (23%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLS----IT 72
+ D + +TV + I +++G SG GKTTLL I GQ + G I +S T
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
Query: 73 SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF------ 126
+K++ + Q +L+ + + + + Y ++E + LLH
Sbjct: 82 VRKRMSMLFQSGALFTDMNVFDNVAY----------PLREHTQLPAPLLHSTVMMKLEAV 131
Query: 127 ------KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV-------IAEEIWN 173
K LSGG RR +LA + +P+L++ DEP G DP+ + E+ N
Sbjct: 132 GLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL-N 190
Query: 174 HLLYLAESGRTILITTHYIDE 194
L G T ++ +H + E
Sbjct: 191 SAL-----GVTCVVVSHDVPE 206
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 59.8 bits (146), Expect = 2e-10
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 16/221 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +N R+ LP VL + +++ ++G +G GK++LL + L+ G+I
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 69 ---LSITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---EY 116
+ I+ + ++ +PQ L+ TI + +G L Q E+ E+
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEYSDEELWQALERVGLKEF 121
Query: 117 LQALL-HLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+++L L+ + G LS GQ++ + LA LL ++L+LDE T+ +DP + +
Sbjct: 122 VESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP-ETDALIQK 180
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215
+ A T+L H +D S I ++ KG ++E P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 61.2 bits (149), Expect = 2e-10
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----SITSKKQ---- 76
L + V + +L+G +G GK+T++ +TG + G+I + K
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 77 -LGFMPQQISLYPEFTIDEMIC----YYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130
+G + Q+++L P+ TI E I + + +++ +A+ L A L+L +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV 139
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
G LS G+Q+ V +A L + +++I+DEPT + E ++ + L GR I+ +H
Sbjct: 140 GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
Query: 191 YIDE 194
+ E
Sbjct: 200 RLKE 203
Score = 48.1 bits (115), Expect = 3e-06
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
G LSGG Q++V++A L+ P++LILDEPT G+D +EI+
Sbjct: 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY 435
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 61.2 bits (149), Expect = 2e-10
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G SG GKT+LL + G + G+ +S+ + L F+PQ+ P+ T+ E +CY
Sbjct: 424 ITGESGAGKTSLLRALAG--LWPWGSGRISMPADSALLFLPQR-PYLPQGTLREALCY-- 478
Query: 101 LIYGMSLQQIKEKAEYLQAL--LHLNHFKRKCGS-------LSGGQQRRVSLAITLLHDP 151
+ + AE + L + L + LSGG+Q+R++ A LLH P
Sbjct: 479 ---PNAAPDFSD-AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKP 534
Query: 152 ELLILDEPTSGIDP 165
+ + LDE TS +D
Sbjct: 535 KWVFLDEATSALDE 548
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 58.9 bits (143), Expect = 4e-10
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKK- 75
VL+ + ++++ +LLG SGCGK+TL + G + GN+ L+ +K
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 76 -----QLGFMPQQISLYPEFTIDEMICYYGLIYGMSL---QQIKEKAEYLQAL-LHLNHF 126
Q+ F ++ P T+ E+I L + +SL +++ +E L+A+ L +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIRE-PLRHLLSLDKAERLARASEMLRAVDLDDSVL 145
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTI 185
++ LSGGQ +RV LA L +P+LLILDE S +D V+ + L L + G
Sbjct: 146 DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTAC 205
Query: 186 LITTHYIDEAKK-SHMIGLMRKGILLEESP 214
L TH + ++ + +M G ++E P
Sbjct: 206 LFITHDLRLVERFCQRVMVMDNGQIVETQP 235
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 59.5 bits (144), Expect = 7e-10
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 40 SLLGASGCGKTT-------LLSCITGQNVLNGGNIHLSITSKKQ-----LGFMPQQ--IS 85
SL+G SG GK+T L+ G+ + NG I K Q + F+ Q S
Sbjct: 354 SLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413
Query: 86 LYPEFT----IDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRR 140
L P T I E + +GL+ G + A L+ + L H R SGGQ++R
Sbjct: 414 LDPRQTVGDSIMEPLRVHGLLPGKAAA--ARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471
Query: 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-S 198
+ +A L +P+++I DE S +D I +I N LL L + G L +H + ++ S
Sbjct: 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS 531
Query: 199 HMIGLMRKGILLEESPPKVLLE 220
H + +M G ++E P + + E
Sbjct: 532 HRVAVMYLGQIVEIGPRRAVFE 553
Score = 45.6 bits (108), Expect = 2e-05
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 32/202 (15%)
Query: 1 MDLKDKCAIRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKT-TLLSCI-- 56
+D +D A+ N A+ + K+ V + L ++Q+ +++G SG GK+ T L+ +
Sbjct: 7 LDARDVLAVENLNIAFMQEQQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRL 65
Query: 57 ---TGQNVLNGGN---------IHLSITSKKQLG----------FMPQQISLYPEFTIDE 94
G V I LS S Q+ F SL P FT+ E
Sbjct: 66 LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE 125
Query: 95 MIC-----YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
I + G ++ + K + ++ R LSGG ++RV +A+ L
Sbjct: 126 QIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185
Query: 150 DPELLILDEPTSGIDPVIAEEI 171
P +LI DEPT+ +D I +I
Sbjct: 186 RPAVLIADEPTTALDVTIQAQI 207
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 57.8 bits (140), Expect = 8e-10
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSI-TSKK 75
+L+ + +++ + G SGCGK+TLL + +G + G +I L ++
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG 135
Q+ + Q +L+ + D +I + I + + L + LSG
Sbjct: 82 QVSYCAQTPTLFGDTVYDNLIFPW-QIRNQQPDPAIFLDDLERFALPDTILTKNIAELSG 140
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDP---VIAEEIWNHLLYLAESGRTILITTHYI 192
G+++R+SL L P++L+LDE TS +D EI + Y+ E +L TH
Sbjct: 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR--YVREQNIAVLWVTHDK 198
Query: 193 DEAK 196
DE
Sbjct: 199 DEIN 202
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 58.3 bits (141), Expect = 8e-10
Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS----GRISFSSQFS 107
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCGS--------LS 134
+ P TI E I I+G+S + + K+ + Q + F K + LS
Sbjct: 108 WIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D +EI+ + + +T ++ T ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 195 AKKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 222 LKKADKILILHEG 234
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 59.5 bits (144), Expect = 9e-10
Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + ++K + ++ G++G GK++LL I G+ + G I S ++ F PQ
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHS----GRISFSPQTS 496
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKE----KAEYLQALLHLNHFKRKCG------SLS 134
+ P TI + I I+G+S + + KA L+ + L K K +LS
Sbjct: 497 WIMPG-TIKDNI-----IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLS 550
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P + +D V +EI+ L S +T ++ T ++
Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEH 610
Query: 195 AKKSHMIGLMRKG 207
KK+ I L+ +G
Sbjct: 611 LKKADKILLLHEG 623
Score = 39.5 bits (92), Expect = 0.002
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQNVLNG 64
V+ +++ VL L +V+ LLG +G GK+TLLS + G+ ++G
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDG 1279
Query: 65 ---GNIHLSITSKKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
++ L T +K G +PQ++ ++ +D + S ++I + AE +
Sbjct: 1280 VSWNSVTLQ-TWRKAFGVIPQKVFIFSGTFRKNLDPYEQW-------SDEEIWKVAEEVG 1331
Query: 119 ALLHLNHFKRKCG--------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ F K LS G ++ + LA ++L ++L+LDEP++ +DPV +
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL-Q 1390
Query: 171 IWNHLLYLAESGRTILITTHYID 193
I L + S T++++ H ++
Sbjct: 1391 IIRKTLKQSFSNCTVILSEHRVE 1413
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 57.8 bits (140), Expect = 9e-10
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCI-----------TGQNVLNGGNIH-LSITSKKQ 76
L +++++ + +L+G SG GK+ I +G+ +L+G + LSI +
Sbjct: 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHI 64
Query: 77 LGFMPQQISLY-PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH--LNHFKRKCGS- 132
M + + P FT+ G +Q + L+AL L +
Sbjct: 65 ATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALI--LEALEAVGLPDPEEVLKKY 122
Query: 133 ---LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILIT 188
LSGG +RV +A+ LL +P LI DEPT+ +D V + L L + G IL+
Sbjct: 123 PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI 182
Query: 189 THYIDE-AKKSHMIGLMRKGILLEESPPK 216
TH + A+ + + +M G ++E K
Sbjct: 183 THDLGVVARIADEVAVMDDGRIVERGTVK 211
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 58.2 bits (141), Expect = 1e-09
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNI-----HLSITSKKQLGFMPQQI---------SLYP 88
G SGCGK+T I G G + L + + I SL P
Sbjct: 54 GESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113
Query: 89 EFTIDEMICYYGLIY--GMSLQQIKEKAEYLQALLHL--NHFKRKCGSLSGGQQRRVSLA 144
TI E+I Y +S Q++K++ + + + L N R SGGQ +R+ +A
Sbjct: 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIA 173
Query: 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L+ +P+L+I DEP S +D I ++ N L
Sbjct: 174 RALILEPKLIICDEPVSALDVSIQAQVVNLL 204
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 56.0 bits (136), Expect = 1e-09
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 36/148 (24%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G SG GK++L + G G I + + L F+PQ+ P T+ E + Y
Sbjct: 32 ITGPSGTGKSSLFRALAGLWPWGSGRIG--MPEGEDLLFLPQR-PYLPLGTLREQLIY-- 86
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
+ LSGG+Q+R++ A LLH P+ + LDE T
Sbjct: 87 -----PWDDV----------------------LSGGEQQRLAFARLLLHKPKFVFLDEAT 119
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILIT 188
S +D EE + L L + +I+
Sbjct: 120 SALD----EESEDRLYQLLKELGITVIS 143
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 57.3 bits (139), Expect = 1e-09
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ------NVLNGGNIHLSITSKKQLGF 79
L+ L +V + L+G +G GKTTL+ ITG+ VL G+ L+ + ++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 80 MP-----QQISLYPEFTIDEMI--------CYYGLIYGMSLQQIKEKAEYLQALLHLNHF 126
Q+ +++ T+ E + + ++ + + + + L A + L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140
Query: 127 K-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
+ R LS GQ++ + + + L DP+LL+LDEP +G+ E+ L LA +I
Sbjct: 141 RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-HSI 199
Query: 186 LITTH 190
L+ H
Sbjct: 200 LVVEH 204
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 56.8 bits (137), Expect = 2e-09
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQNVLNGGNIHLSITSK--KQL 77
L L V+ I L+G +G GK+TLL+ + +G G + ++ +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHR 74
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGG 136
++ QQ + P F M ++ L + E + L L + R LSGG
Sbjct: 75 AYLSQQQT--PPF---AMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 137 QQRRVSLAITLLH-------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
+ +RV LA +L +LL+LDEP + +D + L L + G I++++
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 190 HYIDEA-KKSHMIGLMRKGILL 210
H ++ + +H L+++G LL
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLL 211
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 56.7 bits (137), Expect = 2e-09
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 9 IRVENAYK------RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL 62
+ V N K + +LP VL + ++V L G SG GK+TLL + +
Sbjct: 5 LNVSNVSKTFTLHQQGGVRLP-VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63
Query: 63 NGGNI---HLSIT--------------SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105
+ G I H + +G++ Q + + P + +++ L G+
Sbjct: 64 DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123
Query: 106 SLQQIKEKAEYLQALLHLNHFKRKCGSL-----SGGQQRRVSLAITLLHDPELLILDEPT 160
+ + KA L L+L + SL SGG+Q+RV++A + D +L+LDEPT
Sbjct: 124 PREVARAKAADLLTRLNL---PERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180
Query: 161 SGID 164
+ +D
Sbjct: 181 ASLD 184
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 57.4 bits (140), Expect = 3e-09
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 19/164 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN K +L ++D L ++ I ++G +G GK+TL ITGQ + G I
Sbjct: 325 IEAENLSKSFGDRL--LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382
Query: 69 LSITSKKQLGFMPQQ-ISLYPEFTIDEMICYYGLIYGMSL--QQIKEKAEYLQALLHLNH 125
+ T K L ++ Q +L P T+ E I GL + + ++I +A Y+ +
Sbjct: 383 IGETVK--LAYVDQSRDALDPNKTVWEEISG-GLDI-IKVGNREIPSRA-YVGRF----N 433
Query: 126 FK-----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
FK +K G LSGG++ R+ LA TL +L+LDEPT+ +D
Sbjct: 434 FKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
Score = 51.7 bits (125), Expect = 3e-07
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLL--YLAESGRTI 185
K LSGG++RRV+L LL P++L+LDEPT+ +D AE + W L +L + T+
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESVAW---LEQFLHDYPGTV 213
Query: 186 LITTH 190
+ TH
Sbjct: 214 VAVTH 218
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 57.2 bits (139), Expect = 3e-09
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 39/193 (20%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI--------TGQNVLNGGNIHLSITSKKQ 76
+D + ++++ I + G G G+T L+ C+ G+ ++G + I + +Q
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV--KIRNPQQ 334
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ---------------IKEKAEYLQALL 121
+ Q I++ PE D G++ M + + I + AE L
Sbjct: 335 A--IAQGIAMVPE---DRK--RDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILE 387
Query: 122 HLNHFKRKC-------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ K K LSGG Q++ LA LL +P++LILDEPT GID EI+
Sbjct: 388 SIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL 447
Query: 175 LLYLAESGRTILI 187
+ L + G I++
Sbjct: 448 INQLVQQGVAIIV 460
Score = 46.5 bits (111), Expect = 1e-05
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTL---LSCI------TGQNVLNGGNI---HLSITS 73
LD + + V+ I SL G +G GK+TL LS + G+ + G + ++ T
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 74 KKQLGFMPQQISLYPEFTIDEMI------CYYGLIYGMSLQQIKEKAEYLQALLHLN-HF 126
+ + + Q+++L E ++ E I G+ M + +A+ L A L L+ +
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGI---MDYDAMYLRAQKLLAQLKLDINP 137
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
G+L GQQ+ V +A L LLILDEPT+
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 56.0 bits (136), Expect = 3e-09
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 34/191 (17%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----QL 77
L+ L + V + ++G +G GKTT++ ITG+ + G++ +T +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 78 G----FMPQQISLYPEFTIDE--MICYYG-------LIYGMS---LQQIKEKAEY--LQA 119
G F Q+ +++ T+ E + L + +S +I+E E L
Sbjct: 78 GIGRKF--QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
R G LS GQ++ + + + L+ DP+LL+LDEP +G+ E+ L LA
Sbjct: 136 EAD-----RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190
Query: 180 ESGRTILITTH 190
++++ H
Sbjct: 191 G-KHSVVVVEH 200
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 57.1 bits (138), Expect = 4e-09
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---------GQNVLNGGNI---HLSITS 73
LD + + V+ L G +G GK+TL+ ++ G+ +G + ++ T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 74 KKQLGFMPQQISLYPEFTIDEMI------CYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+ + + Q+++L PE ++ E I G + ++ K + L ++
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
R G GGQQ+ V +A L LLILDEP+S + E + + + L G +
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196
Query: 188 TTHYIDEAKK-SHMIGLMRKG 207
+H ++E K I ++R G
Sbjct: 197 ISHKLNEVKAVCDTICVIRDG 217
Score = 55.2 bits (133), Expect = 1e-08
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 25/192 (13%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---GNIHLS---ITSKKQLGF 79
+D + ++++ I + G G G+T L+ + G G GN+ ++ + +
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG--AYPGKFEGNVFINGKPVDIRNPAQA 333
Query: 80 MPQQISLYPE----------FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK 129
+ I++ PE + + I L +I AE + K K
Sbjct: 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393
Query: 130 C-------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
G LSGG Q++ LA LL +P +LILDEPT G+D EI+ + LA+ G
Sbjct: 394 TASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453
Query: 183 RTILITTHYIDE 194
I++ + + E
Sbjct: 454 VAIIVVSSELAE 465
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 57.2 bits (138), Expect = 4e-09
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 5/183 (2%)
Query: 15 YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK 74
++ + Y L+ + V + I ++G +G GK+TL + I G + N G + + K
Sbjct: 29 FRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI----K 84
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSL 133
+ L + T E I GL+ G++ ++IKE + + F + +
Sbjct: 85 GSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY 144
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193
S G + R+ AI++ +P++L++DE S D ++ + + E G+TI +H +
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
Query: 194 EAK 196
+ K
Sbjct: 205 QVK 207
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 56.7 bits (137), Expect = 6e-09
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT--SKKQLGFMPQQIS--- 85
+T+++ + L+G +G GK+TL +TG G I L S +QL + S
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 86 ----LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRV 141
L+ + E LI LQ+++ L LN + LS GQ++R+
Sbjct: 404 SDYHLFDQLLGPEGKASPQLI-EKWLQRLE-----LAHKTSLNDGRFSNLKLSTGQKKRL 457
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTH---YIDEAKK 197
+L + LL + ++L+LDE + DP E + LL L E G+TI +H Y A +
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517
Query: 198 SHMIGLMRKGILLEESP 214
+ MR G L E +
Sbjct: 518 ---LLEMRNGQLSELTG 531
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 55.4 bits (133), Expect = 6e-09
Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI--HLSITSKK 75
V + L + + +++G +GCGK+TLL ++ G L+G +I + S +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLH---LNHFKRK-C 130
++G + Q + + T+ E++ + + + KE E + + + H +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-----AESGRTI 185
+LSGGQ++R +A+ L + +++LDEPT+ +D I+ +I LL L E G T+
Sbjct: 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQI--DLLELLSELNREKGYTL 197
Query: 186 LITTHYIDEAKK--SHMIGLMRKGILLEESPPK 216
H +++A + SH+I L R+G ++ + PK
Sbjct: 198 AAVLHDLNQACRYASHLIAL-REGKIVAQGAPK 229
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 56.3 bits (136), Expect = 8e-09
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
GSLSGG Q++V + LL PE+L+LDEPT GID EI+ + LA+ + I+I
Sbjct: 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII 446
Score = 49.0 bits (117), Expect = 2e-06
Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 25/202 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS------ITSKKQL-- 77
LD + + V+ +I++L+G +G GK+TLL C+ G + G+I +SK+ L
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 78 --GFMPQQISLYPEFTI-DEMICYYGLIYGMSLQQIK----EKAEYLQALLHLNHFKRKC 130
+ Q+++L + ++ D M GM + Q K KA + + + ++ + K
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-RAKV 132
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY----LAESGRTIL 186
+LS Q + + +A ++ +++I+DEPTS + E+ NHL L E G I+
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS----LTEKEVNHLFTIIRKLKERGCGIV 188
Query: 187 ITTHYIDEAKK-SHMIGLMRKG 207
+H ++E + I ++R G
Sbjct: 189 YISHKMEEIFQLCDEITILRDG 210
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 56.1 bits (136), Expect = 9e-09
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 40/196 (20%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---- 81
LD + + +++L+G +G GK+TLL ++G + G+I + +++ F
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI---DGQEMRFASTTAA 76
Query: 82 ---------QQISLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQALLHLNHF--- 126
Q++ L PE T+ E + Y G + G+ + + +A L H
Sbjct: 77 LAAGVAIIYQELHLVPEMTVAENL-YLGQLPHKGGI----VNRRLLNYEAREQLEHLGVD 131
Query: 127 ---KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-----L 178
LS GQ++ V +A L + ++ DEPTS + A EI L+ L
Sbjct: 132 IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS---AREIEQ--LFRVIREL 186
Query: 179 AESGRTILITTHYIDE 194
GR IL +H ++E
Sbjct: 187 RAEGRVILYVSHRMEE 202
Score = 52.6 bits (127), Expect = 1e-07
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
++ +LSGG Q++ L L D ++++LDEPT GID EI+N + LA G +L
Sbjct: 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450
Query: 187 I 187
Sbjct: 451 F 451
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 56.1 bits (135), Expect = 1e-08
Identities = 52/216 (24%), Positives = 107/216 (49%), Gaps = 26/216 (12%)
Query: 8 AIRVENAYKRHSSKLPY-VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
AI ++N Y SK L + + + ++ +++G +G GKT+L+S + G+ L+
Sbjct: 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE--LSHAE 671
Query: 67 IHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-KAEYLQALLH--- 122
S+ + + ++PQ +S T+ E I ++G + + +A + AL H
Sbjct: 672 TS-SVVIRGSVAYVPQ-VSWIFNATVRENI-----LFGSDFESERYWRAIDVTALQHDLD 724
Query: 123 ------LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L + ++SGGQ++RVS+A + + ++ I D+P S +D +A ++++ +
Sbjct: 725 LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM 784
Query: 177 YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
G+T ++ T+ + H + LM + IL+ E
Sbjct: 785 KDELKGKTRVLVTNQL------HFLPLMDRIILVSE 814
Score = 46.1 bits (109), Expect = 2e-05
Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
+I+ E+ + R+ LP VL L V S ++G +G GK+++L+ + G+
Sbjct: 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293
Query: 61 VLNGGNI-HLSITS-KKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAE 115
+++ ++ +T ++ L +PQ L+ F ID + L + E+A
Sbjct: 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDP----FSEHNDADLWEALERA- 1348
Query: 116 YLQALLHLNHFKRKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
+++ ++ N F + S GQ++ +SLA LL ++L+LDE T+ +D
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
Query: 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I + +S T+L+ H ++ I ++ G +LE P+ LL +
Sbjct: 1409 LIQRTIREEFKSC-TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 55.9 bits (135), Expect = 1e-08
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKT-TLLSCI-----------------TG 58
R + V++ + + ++ +L+G SG GK+ T LS + G
Sbjct: 16 RQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75
Query: 59 QNVLNGGNIHLSITSKKQLGFMPQQ--ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+++L+ L ++ + Q+ +SL P T+++ + Y L +++ + E
Sbjct: 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL-YEVLSLHRGMRREAARGEI 134
Query: 117 L---------QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
L QA L + + LSGG+++RV +A+ LL PELLI DEPT+ +D +
Sbjct: 135 LNCLDRVGIRQAAKRLTDYPHQ---LSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191
Query: 168 AEEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219
+I L L E +L TH + +K + + +M+ G +E++ L
Sbjct: 192 QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245
Score = 53.9 bits (130), Expect = 4e-08
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTT----LLSCITGQN--VLNGGNIH-------LS 70
V+ + T++ L+G SG GK+T LL I Q +G +H L
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLP 359
Query: 71 ITSKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL----LHLNH 125
+ + Q+ F SL P + ++I GL ++ +L + + + + + L
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEE-GLRVHQPTLSAAQREQQVIAVMEEVGLDPET 418
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
R SGGQ++R+++A L+ P L+ILDEPTS +D + +I
Sbjct: 419 RHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 54.3 bits (131), Expect = 1e-08
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT 91
++ +S + +LG +G GKTT + + G + G+I + + + + + PQ I E T
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT---VSYKPQYIKADYEGT 77
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDP 151
+ +++ + K E + L R+ LSGG+ +RV++A L D
Sbjct: 78 VRDLL--SSITKDF-YTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDA 134
Query: 152 ELLILDEPTSGID 164
++ +LDEP++ +D
Sbjct: 135 DIYLLDEPSAYLD 147
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 54.8 bits (132), Expect = 3e-08
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEF---TIDEMIC 97
+ G +GCGK++L + + GG L+ +K +L ++PQ+ P T+ + I
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGR--LTKPAKGKLFYVPQR----PYMTLGTLRDQI- 535
Query: 98 YYGLIYGMSLQQIKEKA-------EYLQALLHLNHFKRKCGS----------LSGGQQRR 140
IY S + +K + + L + L H + G LSGG+++R
Sbjct: 536 ----IYPDSSEDMKRRGLSDKDLEQILD-NVQLTHILEREGGWSAVQDWMDVLSGGEKQR 590
Query: 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+++A H P+ ILDE TS + + ++
Sbjct: 591 IAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 53.2 bits (127), Expect = 3e-08
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 110 IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE---LLILDEPTSGIDPV 166
+ L K +S G +R ++L + LL LL++DEP +G+ P
Sbjct: 167 LDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPK 226
Query: 167 IAEEIWNHLLYLAESGRTILITTH 190
+ ++ L L+E G ++ TTH
Sbjct: 227 LLRKLVELLKELSEKGAQLIFTTH 250
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 53.5 bits (129), Expect = 5e-08
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 25/164 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--------VLNG-----GNIHLSI 71
+L L V + ++G +G GK+TLLS ITG + L G G I
Sbjct: 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334
Query: 72 TSKKQLGFMPQQISL-YPEFT--IDEMICYY----GLIYGMSLQQIKEKAEYLQALLHLN 124
KK +G++ + L Y T + ++ + G+ +S +Q K ++L +L ++
Sbjct: 335 --KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWL-DILGID 391
Query: 125 HFKRKCG--SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
SLS GQQR + L+ P LLILDEP G+DP+
Sbjct: 392 KRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435
Score = 46.2 bits (110), Expect = 1e-05
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85
L L + S ++ +GA+G GK+ L + G+ L G + +L F Q
Sbjct: 21 LPSLTLNAGDS--WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL 78
Query: 86 LYPEF-----------------TIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHF 126
+ E+ T E+I ++K+ A E L +
Sbjct: 79 VSDEWQRNNTDMLSPGEDDTGRTTAEII----------QDEVKDPARCEQLAQQFGITAL 128
Query: 127 -KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-LAESGRT 184
R+ LS G+ R+ L L+ +P+LLILDEP G+D V + + LL L +SG T
Sbjct: 129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD-VASRQQLAELLASLHQSGIT 187
Query: 185 ILITTHYIDE 194
+++ + DE
Sbjct: 188 LVLVLNRFDE 197
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 51.5 bits (124), Expect = 9e-08
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 34/160 (21%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNG---GNIHLS-ITSKK-------QLGFMPQQISLYPE 89
+LG G G +TLL + + N G+IH + I K+ ++ ++ ++ +P
Sbjct: 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97
Query: 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
T+ E + N F R +SGG+++RVS+A L+
Sbjct: 98 LTVRETL-------------------DFALRCKGNEFVRG---ISGGERKRVSIAEALVS 135
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILIT 188
+L D T G+D A EI + +A T ++
Sbjct: 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 51.7 bits (124), Expect = 1e-07
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 5/182 (2%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
+H +K + LD + + + + L+G +G GK+TL + I G G + +
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV----DRNGE 86
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSG 135
+ + L + T E I + L G ++IK + L F + S
Sbjct: 87 VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSS 146
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
G + ++ +I + +P++L++DE S D A++ + + E +TI +H + +
Sbjct: 147 GMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQV 206
Query: 196 KK 197
++
Sbjct: 207 RQ 208
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 52.3 bits (126), Expect = 1e-07
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 19/156 (12%)
Query: 43 GASGCGKTTLLSCIT-------------GQNVLNGGNIHLSITSKK-QLGFMPQQISLYP 88
G SGCGK+TL +T GQ++L + +K Q+ F SL P
Sbjct: 48 GESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107
Query: 89 EFTIDEMICYYGLIYGMSL--QQIKEKAEYLQALLHL--NHFKRKCGSLSGGQQRRVSLA 144
+ I L+ SL + +EKA + A + L H+ R SGGQ++R+++A
Sbjct: 108 RKKV-GQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA 166
Query: 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
L+ DP++++ DEP S +D + ++ N ++ L +
Sbjct: 167 RALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ 202
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 52.0 bits (125), Expect = 2e-07
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LSGG+++RV++A T+L +P +LILDE TS +D + I L ++ +GRT L+ H +
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRL 458
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ I ++ G ++E + LL
Sbjct: 459 STIIDADEIIVLDNGRIVERGTHEELLAA 487
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 51.3 bits (123), Expect = 2e-07
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA--ESGRTILITTH 190
LSGG +RV +A+ + P+LLI DEPT+ +D I +I LL L E+ +LIT
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 191 YIDEAKKSHMIGLMRKGILLEESP 214
A+ +H I +M G ++E
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGK 237
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 51.9 bits (124), Expect = 2e-07
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL- 69
V K + L + + + + I ++G +GCGK+TL G + G I L
Sbjct: 343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
Query: 70 --SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
++++ + + +++ +F + + + SL + +YLQ L + K
Sbjct: 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQ---QYLQRLEIADKVK 459
Query: 128 RKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-LAE 180
+ G +LS GQQ+R++L L D +L+ DE + DP + LL L
Sbjct: 460 IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR 519
Query: 181 SGRTILITTH 190
G+TI+I +H
Sbjct: 520 QGKTIIIISH 529
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 51.8 bits (124), Expect = 3e-07
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
R YVL L + ++ + +++G SG GKTTLL I G G + + K +
Sbjct: 390 RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVE 449
Query: 77 LGFMPQQI----SLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLNHFKRKC 130
+ PEF ++ + G + +I +A A+L ++RK
Sbjct: 450 VPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVL----YRRKF 505
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITT 189
LS GQ+ R LA L P +L++DE + +D + A + + LA E+G T+++ T
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 190 H 190
H
Sbjct: 566 H 566
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 51.1 bits (123), Expect = 3e-07
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 29/147 (19%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ-QISLYPEF 90
VQ+ +L+G +GCGKTTLL + GQ + G IH +K ++ + Q + L PE
Sbjct: 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH--CGTKLEVAYFDQHRAELDPEK 398
Query: 91 TIDEMICYYGLIYGMSLQQIKEKAE----------YLQALLHLNHFKRK---CGSLSGGQ 137
T+ + +L + K++ YLQ L H KR +LSGG+
Sbjct: 399 TVMD-----------NLAEGKQEVMVNGRPRHVLGYLQDFLF--HPKRAMTPVKALSGGE 445
Query: 138 QRRVSLAITLLHDPELLILDEPTSGID 164
+ R+ LA L LLILDEPT+ +D
Sbjct: 446 RNRLLLARLFLKPSNLLILDEPTNDLD 472
Score = 46.9 bits (112), Expect = 9e-06
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 119 ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
A L L+ SLSGG R+ +L L+ +P++L+LDEPT+ +D
Sbjct: 144 AQLGLDPDAALS-SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 49.8 bits (119), Expect = 4e-07
Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIH-------------LSITSKKQL-----GFMPQ 82
++G SG GK+TLL C+ G+ + G LS +++L GF+ Q
Sbjct: 34 IVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93
Query: 83 ------QISLYPEFTIDEMICYYGLI-YGMSLQQIKEKA-EYLQAL-LHLNHFKRKCGSL 133
++ + I E + G YG I+ A ++L+ + + +
Sbjct: 94 NPRDGLRMRVSAGANIGERLMAIGARHYG----NIRATAQDWLEEVEIDPTRIDDLPRAF 149
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYI 192
SGG Q+R+ +A L+ P L+ +DEPT G+D + + + L L + G ++I TH +
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209
Query: 193 DEAK-KSHMIGLMRKGILLE 211
A+ + + +M++G ++E
Sbjct: 210 GVARLLAQRLLVMQQGRVVE 229
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 50.5 bits (121), Expect = 6e-07
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LSGGQ++R+S+A LL + E+LILD+ S +D +I ++L E GRT++I+ H +
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAHRL 510
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLE 220
++ I +M+ G + + L +
Sbjct: 511 SALTEASEILVMQHGHIAQRGNHDQLAQ 538
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 50.3 bits (121), Expect = 7e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
LSGG+++R+++A LL DP +LILDE TS +D V E L GRT I H
Sbjct: 471 QLSGGERQRLAIARALLKDPPILILDEATSALD-VETEAKVKAALDELMKGRTTFIIAHR 529
Query: 192 IDEAKKSHMIGLMRKGILLE 211
+ + + I + G ++E
Sbjct: 530 LSTVRNADRILVFDNGRVVE 549
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 50.3 bits (121), Expect = 7e-07
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 42 LGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101
+G +G GKTTLL + G+ + G + S +G+ Q + +F D L
Sbjct: 351 IGENGVGKTTLLRTLVGELEPDSGTVKWS--ENANIGYYAQDHA--YDFENDL-----TL 401
Query: 102 IYGMSLQQIKEKAEYLQA--------LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPEL 153
MS Q +++ + QA L + K+ LSGG++ R+ ++ P +
Sbjct: 402 FDWMS--QWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV 459
Query: 154 LILDEPTSGID 164
L++DEPT+ +D
Sbjct: 460 LVMDEPTNHMD 470
Score = 43.7 bits (104), Expect = 9e-05
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 39 YSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT-IDEMIC 97
Y L+GA+GCGK+T + + G + GN+ S+ ++LG + Q + EFT +D +I
Sbjct: 30 YGLIGANGCGKSTFMKILGGDLEPSAGNV--SLDPNERLGKLRQDQFAFEEFTVLDTVIM 87
Query: 98 YYG----------LIY---------GMSLQQIKEK-AEY---------LQALLHL----- 123
+ IY GM + ++ K AE + LL +
Sbjct: 88 GHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147
Query: 124 NHFKRKCGSLSG---GQQRRVSLAITLLHDPELLILDEPTSGID 164
H+ G +S G + RV LA L +P++L+LDEPT+ +D
Sbjct: 148 QHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 48.6 bits (116), Expect = 9e-07
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 62/235 (26%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNV 61
I VEN R++ LP VL + V+ ++G +G GK+TL L G+
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISL-----------YPEFTIDEMICYYGLIYGMSLQ 108
++G +I + + + L +PQ +L + E++ +E IYG +L+
Sbjct: 67 IDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE-------IYG-ALR 118
Query: 109 QIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID---- 164
+ E +LS GQ++ + LA LL P +L+LDE T+ ID
Sbjct: 119 -VSEGGL----------------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161
Query: 165 ----PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215
I EE + TIL H + I +M G + E P
Sbjct: 162 ALIQKTIREEF---------TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 48.5 bits (115), Expect = 9e-07
Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 22/219 (10%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
++V N Y S L L + + + + ++G GCGK++LL I G+ G +H
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 69 LSITSKKQLGFMPQQI-SLYP-----------EFTIDEMICYYGLIYGMSLQQIKEKAEY 116
S ++ + F + + Y T++E I + G + + A
Sbjct: 60 WSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF-GSPFNKQRYKAVTDACS 118
Query: 117 LQALLHLNHF--KRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
LQ + L F + + G +LSGGQ++R+ +A L + ++ LD+P S +D +++
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 171 IWNH--LLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207
+ L +L + RT+++ TH + + I M+ G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 49.9 bits (120), Expect = 1e-06
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 45/196 (22%)
Query: 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ------ 76
P +++ +T+Q +L+G SG GK+T+ + G G I +++
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551
Query: 77 ---LGFMPQQISLYPEFTIDEMI-------------------CYYGLIYGMSLQQIKEKA 114
+ + Q I L+ E T+ + + + +I E A
Sbjct: 552 ANSVAMVDQDIFLF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610
Query: 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
E +LSGGQ++R+ +A L+ +P +LILDE TS +DP + I
Sbjct: 611 E-------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII--- 654
Query: 175 LLYLAESGRTILITTH 190
L G T +I H
Sbjct: 655 DDNLRRRGCTCIIVAH 670
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 50.2 bits (120), Expect = 1e-06
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 30/167 (17%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+LGA+G GK+TLL + Q ++ G + +++ + ++PQQ + T+ I ++
Sbjct: 691 VLGATGSGKSTLLQSLLSQFEISEG----RVWAERSIAYVPQQAWIM-NATVRGNILFFD 745
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFK---------------RKCGSLSGGQQRRVSLAI 145
+E A L + ++ + K +LSGGQ+ RVSLA
Sbjct: 746 ----------EEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
+ + ++ +LD+P S +D + E + A +G+T ++ TH +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Score = 29.4 bits (66), Expect = 3.7
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 134 SGGQQRRVSLAITLLHDPELLIL-DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
S GQ++ + +A LL IL DE T+ IDP + +I ++ A S T++ H +
Sbjct: 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS-AFSAYTVITIAHRL 1505
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLE 220
+ I +M G + E P+ L+
Sbjct: 1506 HTVAQYDKIIVMDHGAVAEMGSPRELVM 1533
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 49.6 bits (118), Expect = 1e-06
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTH 190
SLSGGQ++R+++A LL +P++L+LDE TS +D + I ++ + + +TI+ H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
Query: 191 YIDEAKKSHMI 201
I K+S I
Sbjct: 1418 RIASIKRSDKI 1428
Score = 43.5 bits (102), Expect = 1e-04
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGGQ++R+S+A ++ +P++LILDE TS +D
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLD 611
Score = 30.4 bits (68), Expect = 1.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCI 56
L T+ + Y+ +G SGCGK+T+L I
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLI 431
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 49.2 bits (118), Expect = 1e-06
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSKKQLGFMPQQISLYP 88
+ + +LG +G GKTT + + G V+ G L ++ K PQ IS
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAG--VIKPDEGSEEDLKVSYK------PQYISPDY 414
Query: 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL 148
+ T+++++ + K E ++ L + +R LSGG+ +RV++A L
Sbjct: 415 DGTVEDLL---RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS 471
Query: 149 HDPELLILDEPTSGIDP---VIAEEIWNHLLYLAESGRTILITTHYI 192
+ +L +LDEP++ +D +I ++ + + +T L+ H I
Sbjct: 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIE--NNEKTALVVDHDI 516
Score = 45.8 bits (109), Expect = 2e-05
Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 77/221 (34%)
Query: 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH--- 68
N +K + LP T + + +LG +G GK+T L + G+ N G
Sbjct: 86 VNGFKLYR--LP--------TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Query: 69 -------------------------LSITSKKQLGFMPQQISLYPEF---TIDEMICYYG 100
L K PQ + L P+ + E+
Sbjct: 136 SWDEVIKRFRGTELQNYFKKLYEGELRAVHK------PQYVDLIPKVVKGKVGEL----- 184
Query: 101 LIYGMSLQQIKE--KAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157
L+++ E K + + L L N R LSGG+ +RV++A LL D ++ D
Sbjct: 185 ------LKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFD 238
Query: 158 EPTSGID--------PVIAEEIWNHLLYLAESGRTILITTH 190
EP+S +D VI E LAE G+ +++ H
Sbjct: 239 EPSSYLDIRQRLNAARVIRE--------LAEDGKYVIVVEH 271
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 48.4 bits (116), Expect = 1e-06
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG---------------QNVLNGGNIHL 69
+L + +TV+K I++++G +G GK+TL I G Q++L L
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE-----L 69
Query: 70 SITSKKQLG-FMPQQISLYPE----FTIDEMI-------CYYGLIYGMSLQQIKEKAEYL 117
+ + G F+ Q YPE + E + + L + +
Sbjct: 70 EPDERARAGLFLAFQ---YPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAK 126
Query: 118 QALLHLNHFKRKCG---SLSGGQQRRVSLAITLLHDPELLILDEPTSGID----PVIAEE 170
ALL ++ SGG+++R + L +P+L ILDE SG+D ++AE
Sbjct: 127 LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186
Query: 171 IWNHLLYLAESGRTILITTHY 191
I L E R+ LI THY
Sbjct: 187 INR----LREPDRSFLIITHY 203
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 49.0 bits (118), Expect = 2e-06
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--GGNIHLSITSKKQLGFMPQQISLYPE 89
+ + + ++G +G GKTT + G VL G + + + + PQ I +
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAG--VLKPDEGEVDPELK----ISYKPQYIKPDYD 414
Query: 90 FTIDEMICYYGLIYGMSLQQIKEK--AEYLQAL----LHLNH-FKRKCGSLSGGQQRRVS 142
T++++ L+ I + + Y ++ L L + LSGG+ +RV+
Sbjct: 415 GTVEDL-----------LRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVA 463
Query: 143 LAITLLHDPELLILDEPTSGID 164
+A L D +L +LDEP++ +D
Sbjct: 464 IAACLSRDADLYLLDEPSAHLD 485
Score = 41.7 bits (99), Expect = 4e-04
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 64/204 (31%)
Query: 6 KC---AIRVENAYKRHSSKLPYVLDKLCM--------------TVQKSTIYSLLGASGCG 48
KC AI + N LP L++ + ++ + +LG +G G
Sbjct: 60 KCPFDAISIVN--------LPEELEEEPVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIG 111
Query: 49 KTTLLSCITGQNVLNGGNI--------------------HLSITSKKQLGFM--PQQISL 86
KTT + ++G+ + N G+ + ++ + PQ + L
Sbjct: 112 KTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDL 171
Query: 87 YPEF---TIDEMICYYGLIYGMSLQQIKE--KAEYLQALLHLNHF-KRKCGSLSGGQQRR 140
P+ + E+ L+++ E K + + L L + R LSGG+ +R
Sbjct: 172 IPKVFKGKVREL-----------LKKVDERGKLDEVVERLGLENILDRDISELSGGELQR 220
Query: 141 VSLAITLLHDPELLILDEPTSGID 164
V++A LL D + DEPTS +D
Sbjct: 221 VAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 48.8 bits (117), Expect = 2e-06
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI V+ R+ P +LD + + ++ +++G SG GK+TLL + G G++
Sbjct: 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510
Query: 68 --------HLSITS-KKQLGFMPQQISLYPEFTIDEMIC---YYGLIYGMSLQQIKEKAE 115
L + + ++QLG + Q L +I E I L ++ AE
Sbjct: 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAE 569
Query: 116 YLQAL---LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
++A+ +H G+LSGGQ++R+ +A L+ P +L+ DE TS +D
Sbjct: 570 DIRAMPMGMH-TVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 47.5 bits (113), Expect = 3e-06
Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 31/171 (18%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC---------------ITGQNVLNGGNIH- 68
+L L + ++ + +LLG +G GK+TLL +TG LNG +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 69 LSITSKKQL-GFMPQQISLYPEFTIDEMI---CY-YGLIYGMSLQQIKEKAEYLQALLHL 123
+ +L +PQ F+ E++ Y + G + E A AL
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135
Query: 124 NHF-KRKCGSLSGGQQRRVSLAITL--LH-------DPELLILDEPTSGID 164
R +LSGG+ RV A L L P L+LDEPT+ +D
Sbjct: 136 TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 48.0 bits (114), Expect = 4e-06
Identities = 48/198 (24%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSK---KQLGFMP 81
+ +++G +G GKTTL++ + GQ +++G +I+ ++T + K + +
Sbjct: 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN-TVTRESLRKSIATVF 415
Query: 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA----LLHLNHFKRKCGS----L 133
Q L+ +I E I G + +++ E A+ A L N + G L
Sbjct: 416 QDAGLFNR-SIRENIRLGR--EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193
SGG+++R+++A +L + +L+LDE TS +D + N + L ++ RT I H +
Sbjct: 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN-RTTFIIAHRLS 531
Query: 194 EAKKSHMIGLMRKGILLE 211
+ + ++ + +G L+E
Sbjct: 532 TVRNADLVLFLDQGRLIE 549
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 46.8 bits (111), Expect = 7e-06
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHY 191
L+ G+ ++V +AI L + P LLI DEPT+ ++P +I+ L L + S TIL+ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 192 IDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ + + I ++ G +E +P + L+
Sbjct: 219 LQMISQWADKINVLYCGQTVESAPSEELVT 248
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 45.6 bits (108), Expect = 9e-06
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ---------LGFMPQQISLYPEFTID 93
G +G GKTTLL + G + G I + + + LG +P L + +
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP---GLKADLSTL 100
Query: 94 EMICYYGLIYGMSLQQIKEKAEYLQALL-HLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
E + + ++G +Q+ A + L + + R+ LS GQ++R++LA L
Sbjct: 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQ---LSAGQKKRLALARLWLSPAP 157
Query: 153 LLILDEPTSGIDP----VIAEEIWNHLLYLAESGRTILITTH 190
L +LDEP + +D ++ I HL G L+TTH
Sbjct: 158 LWLLDEPYANLDLEGITLVNRMISAHL----RGGGAALVTTH 195
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 47.0 bits (112), Expect = 9e-06
Identities = 52/220 (23%), Positives = 111/220 (50%), Gaps = 28/220 (12%)
Query: 8 AIRVENAYKRHSSKLPY-VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ-NVLNGG 65
AI ++N Y SK L + + V ++ +++G++G GKT+L+S + G+ +
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673
Query: 66 NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK-EKAEYLQALLH-- 122
++ + T + ++PQ +S T+ + I ++G + E+A + AL H
Sbjct: 674 SVVIRGT----VAYVPQ-VSWIFNATVRDNI-----LFGSPFDPERYERAIDVTALQHDL 723
Query: 123 -------LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L + ++SGGQ++RVS+A + + ++ I D+P S +D + ++++
Sbjct: 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783
Query: 176 LYLAESGRT-ILITT--HYIDEAKKSHMIGLMRKGILLEE 212
+ G+T +L+T H++ + + I L+ +G++ EE
Sbjct: 784 IKDELRGKTRVLVTNQLHFLSQVDR---IILVHEGMIKEE 820
Score = 40.9 bits (96), Expect = 8e-04
Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 30/235 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
+I+ E+ R+ +LP VL L + S ++G +G GK+++L+ + G+
Sbjct: 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296
Query: 61 VLNGGNI-HLSITS-KKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAE 115
+++G +I + +K LG +PQ L+ F +D + SL++ K
Sbjct: 1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDV 1356
Query: 116 YLQALLHLNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGID--------PV 166
+ L L+ + G + S GQ++ +SLA LL ++L+LDE T+ +D
Sbjct: 1357 IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1416
Query: 167 IAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I EE T+LI H ++ I ++ G ++E P+ LL
Sbjct: 1417 IREEF---------KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 45.0 bits (107), Expect = 1e-05
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 44/173 (25%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI---TGQNVLNGG---NIHLSITSKKQLGF 79
L L +++ + + + G SG GK+TL++ +G+ L + QL F
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF 70
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQR 139
+ ID GL Y L L +K +LSGG+ +
Sbjct: 71 L-----------ID-----VGLGY-----------------LTLG---QKLSTLSGGELQ 94
Query: 140 RVSLAITLLHDPE--LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
RV LA L +P L ILDEP++G+ ++ + L + G T+++ H
Sbjct: 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 45.9 bits (109), Expect = 1e-05
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 39/203 (19%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI-------------HLSITSKKQL-----GFMPQ 82
++G SG GKTTLL CI+G+ + G + +S +++L GF+ Q
Sbjct: 37 IVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96
Query: 83 --------QISL---YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKC 130
Q+S E + +YG I E ++L+ + + L+
Sbjct: 97 NPRDGLRMQVSAGGNIGERLMAIGARHYGNIR-------AEAQDWLEEVEIDLDRIDDLP 149
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITT 189
+ SGG Q+R+ +A L+ P L+ +DEPT G+D + + + L L E G ++I T
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 190 HYIDEAK-KSHMIGLMRKGILLE 211
H + A+ + + +M++G ++E
Sbjct: 210 HDLAVARLLADRLMVMKQGQVVE 232
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 46.7 bits (111), Expect = 1e-05
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK--RKCGSLSGGQQRRVSLAITLLH 149
I EM Y + + I EK L +L L++ R SLSGG+ +R+ LA LL
Sbjct: 768 ILEMTAYEAEKFFLDEPSIHEKIHALCSL-GLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826
Query: 150 ---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
P L +LDEPT+G+ + + L L G T++I H
Sbjct: 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
Score = 37.9 bits (88), Expect = 0.008
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELL----ILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
R +LSGG+Q R +LA L EL+ ILDEP+ G+ P ++ N + L + G
Sbjct: 472 RALATLSGGEQERTALAKHL--GAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGN 529
Query: 184 TILITTH 190
T+L+ H
Sbjct: 530 TVLLVEH 536
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 46.1 bits (110), Expect = 2e-05
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTH- 190
LS GQ++R++L + L + ++L+LDE + DP E + LL L E G+TI +H
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509
Query: 191 --YIDEAKKSHMIGLMRKGILLE 211
Y A + + MR G L E
Sbjct: 510 DHYFIHADR---LLEMRNGQLSE 529
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 45.9 bits (109), Expect = 2e-05
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 36/180 (20%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
+LD T+ L+G +GCGK+TLL+ + + +GG+ + QL ++ Q+
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY--TFPGNWQLAWVNQET 73
Query: 85 SLYP----EFTIDEMICYYGLIYGMSLQQIKE------------KAEYLQA--------- 119
P E+ ID Y L L E K + + A
Sbjct: 74 PALPQPALEYVIDGDREYRQL--EAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAAS 131
Query: 120 LLHLNHF-----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS--GIDPVIAEEIW 172
LLH F +R SGG + R++LA L+ +LL+LDEPT+ +D VI E W
Sbjct: 132 LLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191
Score = 41.3 bits (97), Expect = 5e-04
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 30/137 (21%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFM-----PQQ--ISLY 87
LLG +G GK+TL+ + G+ G I L+ K QL F+ P Q L
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLA 402
Query: 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL 147
P+ ++ Y G +G ++ E+ SGG++ R+ LA+ +
Sbjct: 403 PQELEQKLRDYLGG-FGFQGDKVTEE----------------TRRFSGGEKARLVLALIV 445
Query: 148 LHDPELLILDEPTSGID 164
P LL+LDEPT+ +D
Sbjct: 446 WQRPNLLLLDEPTNHLD 462
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 44.1 bits (104), Expect = 2e-05
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 50/132 (37%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
V++ + ++G +G GKTT + + GQ + NG N + + PQ I L
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYIDL------ 72
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
SGG+ +RV++A LL +
Sbjct: 73 -----------------------------------------SGGELQRVAIAAALLRNAT 91
Query: 153 LLILDEPTSGID 164
+ DEP++ +D
Sbjct: 92 FYLFDEPSAYLD 103
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 45.1 bits (107), Expect = 2e-05
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTH 190
SGG ++RV +A+ LL P+LLI DEPT+ +D + +I L L E I++ TH
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 45.5 bits (108), Expect = 2e-05
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 20/224 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQ 76
VL + ++V +L+G +G GK+TL S + G L G I L S + +Q
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415
Query: 77 LGFMPQQ------ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKC 130
M QQ + T+ I + + Q+ E A L L+ +
Sbjct: 416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLY-TPLGEQG 474
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+LS GQ++ ++LA L+ P++LILDE T+ ID + I L T+++ H
Sbjct: 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAH 533
Query: 191 YIDEAKKSHMIGLMRKGILLEESPPKVLLEK----YNMKSLEDV 230
+ ++ I ++ +G +E+ + LL + M L+
Sbjct: 534 RLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 42.7 bits (100), Expect = 3e-05
Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 44/167 (26%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
++G G GKTTL + + L + + I
Sbjct: 7 IVGPPGSGKTTLARALARE---------LGPPGGGVIYIDGEDI---------------- 41
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
E + L L K S SG + R++LA+ P++LILDE T
Sbjct: 42 -------------LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEIT 88
Query: 161 SGIDPVIAEEIW------NHLLYLAESGRTILITTHYIDEAKKSHMI 201
S +D + LL +E T+++TT+ + + +
Sbjct: 89 SLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 42.7 bits (101), Expect = 4e-05
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 130 CGSLSGGQQRRVSLAITL---LHDPE-LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
LSGG++ +LA+ L P L ILDE G+DP + + +L G +
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 186 LITTHY 191
++ TH
Sbjct: 135 IVITHL 140
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 44.0 bits (104), Expect = 5e-05
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHY 191
L+ G+ ++V +AI L + P LLI DEPT+ ++P +I+ L L + + TIL+ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 192 IDEAKK-SHMIGLMRKGILLEESPPKVLL 219
+ + + I ++ G +E +P K L+
Sbjct: 219 LQMLSQWADKINVLYCGQTVETAPSKELV 247
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 43.4 bits (102), Expect = 6e-05
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
+ S GQ++ LA + +LI+DE T+ ID + E I ++ A + RT++ H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVVMTAFADRTVVTIAHR 214
Query: 192 IDEAKKSHMIGLMRKGILLE-ESPPKVLLEK 221
+ + ++ ++ +GIL+E ++P +L ++
Sbjct: 215 VSTILDADLVLVLSRGILVECDTPENLLAQE 245
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 44.0 bits (104), Expect = 9e-05
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 131 GSLSGGQQRRVSLAITL-LHD-------PELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+LSGG++ SLA+ L L D ELL LDEP +D E++ L L G
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG 873
Query: 183 RTILITTH 190
R I+I +H
Sbjct: 874 RQIIIISH 881
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 42.2 bits (100), Expect = 2e-04
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGID-PVIAEEIWNHLLYL-----AESGRTILI 187
SGG Q+R+ +A L+ P L+ +DEPT G+D V A LL L E G ++I
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR-----LLDLLRGLVRELGLAVVI 207
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLE 211
TH + A+ +H + +M++G ++E
Sbjct: 208 VTHDLAVARLLAHRLLVMKQGRVVE 232
Score = 34.5 bits (80), Expect = 0.055
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIH 68
G SG GKTTLL+ ++ + + G +H
Sbjct: 39 GESGSGKTTLLNALSARLAPDAGEVH 64
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 42.1 bits (99), Expect = 2e-04
Identities = 48/210 (22%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKKQL 77
+ + T+++ +++G +G GK+TL + G G I + + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 78 GFMPQQ---ISLYPEFTIDEMICY-YGLIYGMSLQQIKEKA-EYLQAL-LHLNHFKRKCG 131
M Q SL P I +++ + L + +Q +++ E L+ + L +H
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH 148
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH 190
L+ GQ++RV+LA L+ P+++I DE + +D + ++ N +L L E G + + T
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 191 YIDEAKK-SHMIGLMRKGILLEESPPKVLL 219
+I K S + +M +G ++E +L
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADVL 238
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQ--ALLHLNHFKRKCGSLSGGQQRRVSLAITLL 148
T+ E+ Y L++ + I+E+ +L L +L R +LSGG+ +R+ LA T +
Sbjct: 97 TVTEIYDYLRLLF--ARVGIRERLGFLVDVGLGYLT-LSRSAPTLSGGEAQRIRLA-TQI 152
Query: 149 H---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
L +LDEP+ G+ P + + L L + G T+L+ H
Sbjct: 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 41.9 bits (99), Expect = 2e-04
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGID----PVIAEEIWNHLLYLAESGRTILITT 189
SGG+++R + L D EL ILDE SG+D +IAE I L S +I++ T
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK----LMTSENSIILIT 208
Query: 190 HY 191
HY
Sbjct: 209 HY 210
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 41.2 bits (97), Expect = 3e-04
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHY 191
+SGG +R+ +A+ LL + +I DEPT+ +D V I + L + + +L+ TH
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
Query: 192 ID-EAKKSHMIGLMRKGILLEESP 214
+ A+ + + +M G ++E+
Sbjct: 201 MGVVARLADDVAVMSHGRIVEQGD 224
Score = 31.2 bits (71), Expect = 0.66
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+T+Q+ + +L+G SG GK+ L+C +L G
Sbjct: 24 LTLQRGRVLALVGGSGSGKS--LTCAAALGILPAG 56
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 41.4 bits (97), Expect = 3e-04
Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 33/259 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITS---------K 74
VL+ + ++ LLG +G GK+TLLS +LN G+I + S +
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFL--RLLNTEGDIQIDGVSWNSVPLQKWR 76
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG--- 131
K G +PQ++ ++ T + + YG S ++I + AE + + F +
Sbjct: 77 KAFGVIPQKVFIFSG-TFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132
Query: 132 -----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
LS G ++ + LA ++L ++L+LDEP++ +DP+ + I L A + T++
Sbjct: 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVI 191
Query: 187 ITTHYIDEAKKSHMIGLMRKGILLE-ESPPKVLLEKYNMK---SLEDVFLLLSSKQQHDR 242
++ H I+ + ++ + + + +S K+L EK + K S D L + +
Sbjct: 192 LSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLF---PRRNS 248
Query: 243 IEQRRKSFLWPIQAIQEHT 261
+ +RK IQA+QE T
Sbjct: 249 SKSKRKPRP-QIQALQEET 266
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 41.8 bits (98), Expect = 4e-04
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
+ + SGG + R++LA L +P+LL+LDEPT+ +D + +W YL + +T +
Sbjct: 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLWLE-TYLLKWPKTFI 395
Query: 187 ITTH 190
+ +H
Sbjct: 396 VVSH 399
Score = 40.2 bits (94), Expect = 0.001
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 36/141 (25%)
Query: 40 SLLGASGCGKTTLLSCITGQ------NVLNGGNIHLSITSKKQ----------LGFMPQQ 83
+++G +G GK+T+L I+G+ V + +++ S+ L +M +
Sbjct: 539 AMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRC 598
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143
PE + + +G+ ++LQ + +LSGGQ+ RV+
Sbjct: 599 FPGVPEQKLRAHLGSFGVTGNLALQPMY--------------------TLSGGQKSRVAF 638
Query: 144 AITLLHDPELLILDEPTSGID 164
A P +L+LDEP++ +D
Sbjct: 639 AKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 41.2 bits (97), Expect = 6e-04
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 132 SLSGGQQRRVSLAITLLHD---PELLILDEPTSGIDPVIAEEIWNHLLY----LAESGRT 184
+LSGG+ +R+ LA L L ILDEPT+G+ ++I LL L + G T
Sbjct: 829 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH---FDDI-KKLLEVLQRLVDKGNT 884
Query: 185 ILITTHYIDEAK 196
+++ H +D K
Sbjct: 885 VVVIEHNLDVIK 896
Score = 36.1 bits (84), Expect = 0.024
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 107 LQQIKEKAEYLQ--ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL----ILDEPT 160
L++I+E+ +L L +L+ R G+LSGG+ +R+ LA + L +LDEP+
Sbjct: 462 LKEIRERLGFLIDVGLDYLS-LSRAAGTLSGGEAQRIRLATQI--GSGLTGVLYVLDEPS 518
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
G+ + N L L + G T+++ H DE
Sbjct: 519 IGLHQRDNRRLINTLKRLRDLGNTLIVVEH--DE 550
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 39.7 bits (93), Expect = 0.001
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 111 KEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID----- 164
+ K + L L L H R LSGG+ +RV++A L D + DEP+S +D
Sbjct: 117 RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
Query: 165 ---PVIAEEIWNHLLYLAESGRTILITTH 190
+I E LAE +L+ H
Sbjct: 177 NAARLIRE--------LAEDDNYVLVVEH 197
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 38.7 bits (91), Expect = 0.002
Identities = 41/173 (23%), Positives = 60/173 (34%), Gaps = 39/173 (22%)
Query: 43 GASGCGKTTLLSCI----TGQNVLNG-GNIHLS--ITSKKQLGFMPQQISLYPEFTID-- 93
G +G GKTT++ + TG+ N G H I + Q+ L F
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRA----QVKL--AFENANG 82
Query: 94 -EMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAI------T 146
+ L + I L G SGG++ SL I T
Sbjct: 83 KKYTITRSL--AILENVIFCHQGESNWPLLDMR-----GRCSGGEKVLASLIIRLALAET 135
Query: 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-----GRTILITTHYIDE 194
+ +L LDEPT+ +D E I L + E +++ TH DE
Sbjct: 136 FGSNCGILALDEPTTNLDE---ENIEESLAEIIEERKSQKNFQLIVITH--DE 183
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 38.7 bits (91), Expect = 0.002
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 132 SLSGGQQRRVSLAITLLH---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
+LSGG+ +R+ LA L L ILDEPT+G+ +++ L L + G T+++
Sbjct: 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI 228
Query: 189 THYIDEAK 196
H +D K
Sbjct: 229 EHNLDVIK 236
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 37.8 bits (88), Expect = 0.004
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 30/193 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC--------ITGQNVLNGGNIHLSITSKKQ 76
+L L + V+ +++++G +G GK+TL + +TG V G L ++ + +
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 77 LG---FMPQQISLYP------------EFTIDEMICYYGL--IYGMSLQQ-IKEKAEYLQ 118
G FM Q YP + ++ + Y G + Q ++EK L+
Sbjct: 76 AGEGIFMAFQ---YPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 119 ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L G SGG+++R + + +PEL ILDE SG+D + + + + L
Sbjct: 133 MPEDLLTRSVNVG-FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191
Query: 179 AESGRTILITTHY 191
+ R+ +I THY
Sbjct: 192 RDGKRSFIIVTHY 204
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 36.5 bits (85), Expect = 0.009
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 150 DPELLILDEPTSGIDPV----IAEEIWNHLLYLAESGRTILITTHY 191
L++LDE SG DPV +A I L L E G ++ TTHY
Sbjct: 108 PDSLVLLDELGSGTDPVEGAALAIAI---LEELLERGALVIATTHY 150
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 33.7 bits (78), Expect = 0.015
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 126 FKRKCGSLSGGQQRR-VSLAITL-----------LHDPELLILDEPTSGIDP 165
R G+LSGG+++ LA+ P L+ LDE + +D
Sbjct: 16 LSRDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDE 67
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 36.8 bits (86), Expect = 0.016
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 132 SLSGGQQRRVSLAITLLHDPE----LLILDEPTSGIDPVIAEEIWNHLLY----LAESGR 183
+LSGG+ +RV LA L L ILDEPT+G+ ++I LL L + G
Sbjct: 822 TLSGGEAQRVKLA-KELSKRSTGKTLYILDEPTTGLHF---DDI-KKLLEVLHRLVDKGN 876
Query: 184 TILITTHYID 193
T+++ H +D
Sbjct: 877 TVIVIEHNLD 886
Score = 33.3 bits (77), Expect = 0.19
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 107 LQQIKEKAEYLQAL----LHLNHFKRKCGSLSGGQQRRVSLAITL---LHDPELLILDEP 159
L++IKE+ +L + L L+ R G+LSGG+ +R+ LA + L L +LDEP
Sbjct: 455 LKEIKERLGFLVDVGLGYLTLS---RSAGTLSGGEAQRIRLATQIGSGLTGV-LYVLDEP 510
Query: 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
+ G+ E + L L + G T+++ H DE
Sbjct: 511 SIGLHQRDNERLIETLKRLRDLGNTVIVVEH--DE 543
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 35.6 bits (82), Expect = 0.030
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 132 SLSGGQQRRVSLAIT------LLHDPELLILDEPTSGIDPVIAEEIWNHLLY-LAESG-- 182
SLSGG++ V+ A+ L +D LLI+DEPT+ +D + + + Y L +S
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDI 860
Query: 183 -RTILITTH 190
+ I+I+ H
Sbjct: 861 PQVIMISHH 869
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 33.6 bits (77), Expect = 0.053
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIH 68
++G G GK++LL+ + G V ++
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVP 29
>gnl|CDD|224596 COG1682, TagG, ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 263
Score = 34.1 bits (79), Expect = 0.073
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 252 WPIQAIQEHTRYLANFLPLTYPIDSFRSIVFRGFDIFHWQVYYGFLSSTGWIVGLTLVCW 311
+P+ + E R L PLT+ I+SFR+ + G + + + L V
Sbjct: 194 YPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG----DVPDLHLLVYILLLTLILLFVGL 249
Query: 312 ILLRY 316
+L R
Sbjct: 250 LLFRK 254
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 32.9 bits (76), Expect = 0.080
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI---TSKKQLG--------FMPQQ--I 84
+ L G SG GK+TLL + + N S+ T K + G F+ ++
Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDP---NFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFE 57
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
L E ++G YG S ++E
Sbjct: 58 RLIENGEFLEWAEFHGNYYGTSKAAVEEALA 88
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 33.6 bits (77), Expect = 0.10
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+ ILDEP + + P E+ L LA+SG I+I TH
Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 33.4 bits (77), Expect = 0.11
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 32/184 (17%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCIT----GQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88
+ + ++ + G +G GK+T+L IT G+ G +L S G ++S
Sbjct: 25 LDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLR--SVFAPGEDTAEVSF-- 80
Query: 89 EFTIDEMICYYGLI--YGMSLQQIKEKAEYLQALLHLNHF----KRKCGSLSGGQQRRVS 142
F + Y + G+ Q LL F R +LSGG+ S
Sbjct: 81 TFQLGGKK--YRVERSRGLDYDQFTR-----IVLLPQGEFDRFLARPVSTLSGGETFLAS 133
Query: 143 LAITL-LHDP---------ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
L++ L L + E L +DE +DP E + L + R + + +H +
Sbjct: 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISH-V 192
Query: 193 DEAK 196
+E K
Sbjct: 193 EELK 196
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 33.8 bits (77), Expect = 0.11
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
+++ +Y+L+G +G GKTT + + + V+ G +++ + +I + + I
Sbjct: 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY-----RIGGHEQLRI 242
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
YG + G+S++ IK+ A+ LQ +LH
Sbjct: 243 ------YGKLLGVSVRSIKDIAD-LQLMLH 265
>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 374
Score = 33.5 bits (76), Expect = 0.12
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 19 SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSITSKKQ 76
++ LP VLD +++ +++L+G +G GKTT + + + V+ G + L T +
Sbjct: 121 AANLP-VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136
+G E + +G I G+ + +K+ + AL L + G
Sbjct: 180 IGG-------------HEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGM 226
Query: 137 QQ--RRVSLAITLLHDPE-----LLILDEPTSG 162
Q R VS I +LH + LL+L+ + G
Sbjct: 227 SQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG 259
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 33.2 bits (76), Expect = 0.12
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 22/170 (12%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL-----GFMPQQ 83
L T+++ +++G +G GK+TL + G G + + L + Q+
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL---LIDDHPLHFGDYSYRSQR 88
Query: 84 I---------SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL----LHLNHFKRKC 130
I SL P I + I + L L+ + + + ++ L L +H
Sbjct: 89 IRMIFQDPSTSLNPRQRISQ-ILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP 147
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
L+ GQ++R+ LA L+ P+++I DE + +D + ++ N +L L E
Sbjct: 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE 197
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 31.8 bits (73), Expect = 0.19
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 LLGASGCGKTTLLSCITGQN 60
L+G SGCGKTTL + G+
Sbjct: 6 LIGRSGCGKTTLTQALNGEE 25
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 31.8 bits (73), Expect = 0.31
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 250 FLWPIQAIQEHTRYLANFLPLTYPIDSFRSIVF 282
F P+ ++ +++ PLTY I++ R+ F
Sbjct: 178 FFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 32.0 bits (73), Expect = 0.43
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 134 SGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
SGG+ RV LA+ ++ LI DE G+ A+ I L L+E + + +T
Sbjct: 442 SGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVT 500
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 31.4 bits (71), Expect = 0.47
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 250 FLWPIQAIQEHTRYLANFLPLTYPIDSFRSIVFRGFDIFHWQVYYGFLSSTGWIVGLTLV 309
+P++ + + ++ PLTY ID+ R + G+ ++ L + V L+
Sbjct: 217 VFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRND--GIWISLLILLLFAVVFLLL 274
Query: 310 CWILLRYKNGL 320
+LLR + L
Sbjct: 275 GLLLLRRRRKL 285
>gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.
Length = 681
Score = 31.7 bits (73), Expect = 0.59
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 182 GRTILITTHYIDEAKKSHMIGLMRKGI-----------LLEESPPKVLLEKYNMKSLEDV 230
GR ITT I ++++ + +R+ I L+EES EK +++S E+
Sbjct: 443 GRKP-ITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEES------EKLDLQSAEET 495
Query: 231 FLLLSS 236
+ L
Sbjct: 496 YEELQE 501
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 31.5 bits (72), Expect = 0.59
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 152 ELLILDEPTSGIDPVI----AEEIWNHLLYLAESGRTILITTHY 191
L++ DE SG DP A I L L E I+ TTHY
Sbjct: 397 SLVLFDELGSGTDPDEGAALAIAI---LEDLLEKPAKIVATTHY 437
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 31.0 bits (71), Expect = 0.66
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 132 SLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SGG+ R+ LA+ + LI DE +GI +A+ + L L+ S + + I
Sbjct: 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCI 229
Query: 188 T 188
T
Sbjct: 230 T 230
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 30.3 bits (69), Expect = 0.83
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 140 RVSLAITLLHDPELLILDEPTSGIDPV----IAEEIWNHLLYLAESGRTILITTHY 191
+ ++L L+++DE G IA + HLL E G L TH+
Sbjct: 98 ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL---EKGCRTLFATHF 150
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 30.8 bits (70), Expect = 0.88
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 31/100 (31%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMIC 97
+ +L+G +G GKTT L+ + + VL G KK++ + T D
Sbjct: 197 VIALVGPTGVGKTTTLAKLAARFVLEHG--------KKKVALI----------TTD---T 235
Query: 98 Y----------YGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
Y Y I G+ ++ ++ E +AL L
Sbjct: 236 YRIGAVEQLKTYAEILGVPVKVARDPKELAEALDRLRDKD 275
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 30.9 bits (70), Expect = 1.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 132 SLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILIT 188
+LS +++ L E L++ DE +G DP + +L YL + +LIT
Sbjct: 382 NLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT 441
Query: 189 THY 191
THY
Sbjct: 442 THY 444
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 29.9 bits (68), Expect = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58
L + +K+ + S G +G GKTTLL+ +
Sbjct: 19 WLAVEARKNILIS--GGTGSGKTTLLNALLA 47
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 30.5 bits (69), Expect = 1.1
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 133 LSGGQQRRVSLAITLL--HDPELLILDEPTSGIDPVIAEEIWNHLLYL---AESGRTILI 187
LS G R ++LA LL P LL+LDEP + + P ++ L L A +++
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHP----DLLPALAELMRSAAKRSQVIV 326
Query: 188 TTHYID 193
+TH
Sbjct: 327 STHSPR 332
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 30.4 bits (69), Expect = 1.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 39 YSLLGASGCGKTTLL 53
Y ++G G GKTTLL
Sbjct: 114 YLVIGPPGSGKTTLL 128
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase.
The Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show
sequence conservation in the region between the Walker
A and B motifs (G1 and G3 box motifs), to the exclusion
of other GTPases. TrmE is ubiquitous in bacteria and is
a widespread mitochondrial protein in eukaryotes, but
is absent from archaea. The yeast member of TrmE
family, MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein
involved in cell division control. Era is characterized
by a distinct derivative of the KH domain (the
pseudo-KH domain) which is located C-terminal to the
GTPase domain. EngA and its orthologs are composed of
two GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct
GTPases, gave rise to this family.
Length = 161
Score = 29.5 bits (67), Expect = 1.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ G GK++LL+ + GQNV I
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIP 29
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 29.4 bits (67), Expect = 1.5
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73
K + L G SG GK+TL+ + L + S+++
Sbjct: 3 KGLLIVLSGPSGVGKSTLVKAL-----LEDDKLRFSVSA 36
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 29.7 bits (68), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI 67
L+G SG GK+TLL+ + + VL G I
Sbjct: 90 LVGQSGVGKSTLLNALLPELVLATGEI 116
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 29.9 bits (68), Expect = 1.9
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTL 52
++ V N YKR ++K D + + KS I L+G +G GKT L
Sbjct: 74 SVAVYNHYKRLNNKE----DNDDVELSKSNI-LLIGPTGSGKTLL 113
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 29.1 bits (66), Expect = 2.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI 67
L G SG GK+TLL+ + + L G I
Sbjct: 40 LAGQSGVGKSTLLNALLPELDLRTGEI 66
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 29.6 bits (67), Expect = 2.0
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 134 SGGQQRRVSLAITLLH---------DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GR 183
S GQQR ++LA+ L + +L+LD+ + +D LL E +
Sbjct: 185 SQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQA----ALLDAIEGRVQ 240
Query: 184 TILITTH 190
T + TT
Sbjct: 241 TFVTTTD 247
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 30.0 bits (69), Expect = 2.1
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 133 LSGGQQRRVSLAITLLHDPE----LLILDEPTSG 162
LSGG+ +RV LA L L ILDEPT+G
Sbjct: 831 LSGGEAQRVKLA-KELSKRSTGKTLYILDEPTTG 863
>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional.
Length = 339
Score = 29.7 bits (66), Expect = 2.3
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61
A+R E+A +SKLP + M+ QK+ ++G GK+TLL+ I G+ +
Sbjct: 25 AVR-EDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKL 77
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 29.5 bits (67), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 39 YSLLGASGCGKTTLL 53
+L+G SG GKTTL
Sbjct: 2 IALVGHSGSGKTTLA 16
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 29.6 bits (67), Expect = 2.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 43 GASGCGKTTLLSCITG 58
G +G GKTTLLS +
Sbjct: 185 GGTGSGKTTLLSALLA 200
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 28.7 bits (65), Expect = 2.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 41 LLGASGCGKTTLL 53
+ G GKTTLL
Sbjct: 4 ITGGPSTGKTTLL 16
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 28.7 bits (64), Expect = 2.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI 67
L G G GKTTL I + G
Sbjct: 24 LYGPPGTGKTTLARAIANELFRPGAPF 50
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. All proteins in this
family for which functions are known are involved in DNA
damage tolerance (likely cell cycle checkpoints).This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 637
Score = 29.5 bits (66), Expect = 2.6
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 20/91 (21%)
Query: 18 HSSKLPYV---LDKLCMTVQKSTIYSLLGASGCGKTT---LLSCITGQNV---LNGGNIH 68
H K+ V L + I + G SGCGK+T +LS G V N
Sbjct: 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148
Query: 69 ---------LSITSKKQLGFMPQQISLYPEF 90
LS+ S F QI ++ EF
Sbjct: 149 FQKNDHKVTLSLESCFSN-FQS-QIEVFSEF 177
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels of
palindromic sequences in DNA. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1042
Score = 29.6 bits (66), Expect = 2.9
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 128 RKCGSLSGGQQRRVSLAITL-LHDP---------ELLILDEPTSGIDPVIAEEIWNHLLY 177
R +LSGG+ SL++ L L D + L +DE +D + L
Sbjct: 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDA 1005
Query: 178 LAESGRTILITTH 190
+ E + I I +H
Sbjct: 1006 IREGSKMIGIISH 1018
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.2 bits (66), Expect = 3.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI 67
LLG SG GK+TL++ + + G I
Sbjct: 169 LLGQSGVGKSTLINALLPELNQKTGEI 195
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 28.2 bits (64), Expect = 3.6
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 43 GASGCGKTT---LLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMI 96
G +G GK+T LL+ G L+ G I K +++ PE + + +
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLA-----SEVAAIPE--VRKAL 55
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 28.4 bits (64), Expect = 3.8
Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 34/158 (21%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL---GFMPQQISLYPEFTIDEMI 96
+++G +G GK+ ++ I VL G L S L G S E T D+
Sbjct: 26 AIVGPNGSGKSNIVDAI--CFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKS- 82
Query: 97 CYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL----AITLLHDPE 152
Y+ ++ G +QI LSGG++ +L A+ +
Sbjct: 83 -YFLVLQGKV-EQI----------------------LSGGEKSLSALALIFALQEIKPSP 118
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+LDE + +DP + + + +A+ ++ T
Sbjct: 119 FYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.1 bits (66), Expect = 3.9
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 132 SLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SGG+ R+ LA+ ++ D LI DE +GI +A+ + L L+E + + +
Sbjct: 431 VASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCV 490
Query: 188 T 188
T
Sbjct: 491 T 491
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 28.4 bits (63), Expect = 4.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 41 LLGASGCGKTTLLSCITG 58
+LG G GKTTLL+ + G
Sbjct: 10 VLGDGGVGKTTLLNRLVG 27
>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase. The
Escherichia coli YbbB protein was shown to encode a
selenophosphate-dependent tRNA 2-selenouridine synthase,
essential for modification of some tRNAs to replace a
sulfur atom with selenium. This enzyme works with SelD,
the selenium donor protein, which also acts in
selenocysteine incorporation. Although the members of
this protein family show a fairly deep split, sequences
from both sides of the split are supported by
co-occurence with, and often proximity to, the selD gene
[Protein synthesis, tRNA and rRNA base modification].
Length = 311
Score = 28.3 bits (64), Expect = 4.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 8 AIRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLL 53
R+E YK R +V+D+L Q + L G +G GKT LL
Sbjct: 102 VPRLEGGYKAYRR-----FVIDQLEELPQPFPLIVLGGMTGSGKTELL 144
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 438
Score = 28.6 bits (65), Expect = 4.7
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 285 FDIFHWQVYYGFLSSTGWIVGLTLVCWILLRYKN 318
+ + + T +++ L L+ + R
Sbjct: 404 LVVLGAGLAGAWTVETVYVIVLALIFLLRFRSGK 437
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 28.6 bits (64), Expect = 5.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 21 KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58
KLP VL L + K + ++GA+G GK+T ++ + G
Sbjct: 114 KLPEVLKDLALA--KRGLVIIVGATGSGKSTTMAAMIG 149
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The
full-length GTPase protein is required for the complete
activity of the protein of interacting with the 50S
ribosome and binding of both adenine and guanine
nucleotides, with a preference for guanine nucleotide.
Length = 117
Score = 27.3 bits (61), Expect = 5.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
L+G GK+TL++ +TG V
Sbjct: 4 LVGRPNVGKSTLINALTGAKV 24
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 28.4 bits (64), Expect = 5.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI 67
LLG+SG GK+TL++ + G+ V G +
Sbjct: 200 LLGSSGVGKSTLVNALLGEEVQKTGAV 226
>gnl|CDD|234401 TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb. This
model represents the C-terminal domain or EccCb subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 566
Score = 28.4 bits (64), Expect = 5.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 42 LGASGCGKTTLLSCI 56
G S GKTTLL I
Sbjct: 369 FGDSESGKTTLLRAI 383
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 28.4 bits (64), Expect = 5.6
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 35 KSTIYSLLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGF-MPQQISLYPEFTI 92
K T + + G S K +L+ G +L N H S+ + G + + +Y +
Sbjct: 75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVIN----GLVLSGAVPVYLKPER 130
Query: 93 DEMICYYGLIYGMSLQQIKEK 113
+ YYG+ G+ + K+
Sbjct: 131 NP---YYGIAGGIPPETFKKA 148
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 28.2 bits (63), Expect = 5.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI 67
++G SG GK+TLL + + + GG +
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLARGGRV 32
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 28.1 bits (63), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 38 IYSLLGASGCGKTTLLSCIT 57
I + G SGCGK+T L +T
Sbjct: 1 IIGVAGDSGCGKSTFLRRLT 20
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 28.4 bits (64), Expect = 6.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 101 LIYGMSLQQIKEKAEYLQA 119
L+YGM + I E A L+A
Sbjct: 161 LVYGMGEKPIVEIARRLKA 179
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.1 bits (63), Expect = 6.8
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 128 RKCGSLSGGQQ------RRVSLAITLLHDPELLILDEPTSGID 164
R LSGG++ R++L++ L + LLILDEPT +D
Sbjct: 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLD 826
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA,
an essential protein involved in cell division control.
YihA and its orthologs are small proteins that
typically contain less than 200 amino acid residues and
consists of the GTPase domain only (some of the
eukaryotic homologs contain an N-terminal extension of
about 120 residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 27.5 bits (62), Expect = 7.9
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
G S GK++L++ +T + L+ TSK
Sbjct: 4 FAGRSNVGKSSLINALTNRK-------KLARTSKTP 32
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication,
recombination, and repair].
Length = 845
Score = 28.1 bits (63), Expect = 7.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 16 KRHSSKLP--YVLDKLCMTVQKSTIYSLLGASGCGKTT-----LLSCITGQN 60
+ S LP V D++ ++++ + ++G +G GKTT LL G
Sbjct: 43 LEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIA 94
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 28.0 bits (63), Expect = 7.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 107 LQQIKEKAEYLQALL--HLNHFK-----RKCGSLSGGQ-QRRVSLAITLLHDPELLIL 156
L++++EK EY L L H + R G + G + V+ I L + LL+L
Sbjct: 289 LEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVL 346
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 27.8 bits (63), Expect = 8.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTL 52
++ V N YKR D + +QKS I L+G +G GKT L
Sbjct: 84 SVAVYNHYKRLRHGDKKDDD---VELQKSNIL-LIGPTGSGKTLL 124
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP).
Signal recognition particle receptor, beta subunit
(SR-beta). SR-beta and SR-alpha form the heterodimeric
signal recognition particle (SRP or SR) receptor that
binds SRP to regulate protein translocation across the
ER membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC)
to the ER membrane via interaction with the SR, which
is localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been
observed in human colon cancer, suggesting it may play
a role in the development of this type of cancer.
Length = 202
Score = 27.3 bits (61), Expect = 8.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
LLG S GKT L + +T V
Sbjct: 5 LLGPSDSGKTALFTKLTTGKV 25
>gnl|CDD|119192 pfam10672, Methyltrans_SAM, S-adenosylmethionine-dependent
methyltransferase. Members of this family are
S-adenosylmethionine-dependent methyltransferases from
gamma-proteobacterial species. The diversity in the
roles of methylation is matched by the almost
bewildering number of methyltransferase enzymes that
catalyze the methylation reaction. Although several
classes of methyltransferase enzymes are known, the
great majority of methylation reactions are catalyzed by
the S-adenosylmethionine-dependent methyltransferases.
Length = 286
Score = 27.5 bits (61), Expect = 8.5
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202
L + L + + LD G+ ++A W ++ GR +++ Y D A ++G
Sbjct: 26 LLVNLFKEVDDAFLDALKRGLAALVAAPAWA-----SKQGRRLVLQHRYADGAPSEVLLG 80
Query: 203 LMRKGILLEESPPKVLLE 220
+ + ++ E+ K L+
Sbjct: 81 ELLETPVVVENGLKYQLD 98
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction
only].
Length = 116
Score = 26.6 bits (59), Expect = 9.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196
P +AE + N L+ LA++GR TH IDE +
Sbjct: 66 PELAEAVENQLIQLAQTGR----ITHKIDEEE 93
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site [Energy
metabolism, Amino acids and amines].
Length = 142
Score = 27.0 bits (60), Expect = 9.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 41 LLGASGCGKTTLLSCITGQNVL 62
+G+ GCGKTTL + G+ +L
Sbjct: 5 FIGSVGCGKTTLTQALQGEEIL 26
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 27.2 bits (60), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 41 LLGASGCGKTTLLSCI 56
L G SG GKT+LL +
Sbjct: 29 LTGPSGTGKTSLLREL 44
>gnl|CDD|115027 pfam06342, DUF1057, Alpha/beta hydrolase of unknown function
(DUF1057). This family consists of several
Caenorhabditis elegans specific proteins of unknown
function. Members of this family have an alpha/beta
hydrolase fold.
Length = 297
Score = 27.4 bits (61), Expect = 9.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 64 GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
G IH I K ++ + L P F D ++ +Y G+ + +E A
Sbjct: 137 GFRIHKGIRPKSRMETINWVYKLLPLFLGDSILYFYYKSVGLKVSDGEEAA 187
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 27.4 bits (62), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSI 71
G SG GK+TL+ + ++ N+ LS+
Sbjct: 12 GPSGAGKSTLVKALLERDP----NLQLSV 36
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 27.6 bits (62), Expect = 9.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 41 LLGASGCGKTTLL 53
LLGA GK+T+L
Sbjct: 7 LLGAGESGKSTIL 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.423
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,611,619
Number of extensions: 1634232
Number of successful extensions: 2838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 548
Length of query: 321
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 224
Effective length of database: 6,635,264
Effective search space: 1486299136
Effective search space used: 1486299136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.0 bits)