RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy106
(321 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 198 bits (505), Expect = 2e-62
Identities = 63/243 (25%), Positives = 118/243 (48%), Gaps = 12/243 (4%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ V++ KR K +L + +++ I+ L+G +G GKTT L I+ + G +
Sbjct: 15 AVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ +K + ++P++ Y E + + Y S +I+E E
Sbjct: 73 TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 132
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ L K + + S G R++ +A L+ +P L ILDEPTSG+D + A E+ L
Sbjct: 133 IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSK 237
++ G TIL+++H + E + I L+ G ++E + L E+Y +++E+VF +
Sbjct: 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKC 252
Query: 238 QQH 240
++
Sbjct: 253 SEN 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 182 bits (465), Expect = 4e-57
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 13/210 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ + + + VL+++ MT++K + + G +G GKTTLL I+ G I
Sbjct: 10 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 68 HLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL 123
+ K ++ F+P++I + + ++++ + +YG+ + K + + +
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEV 124
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESG 182
K+K G LS G RRV LA TLL + E+ +LD+P ID ++ +L + E G
Sbjct: 125 LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEE 212
I+ + + + K +
Sbjct: 185 IVIISSREELSYCDV---NENLHKYSTKID 211
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 143 bits (362), Expect = 7e-41
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 25/242 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I+++ + K +L K+ + K + L G +G GKTTLL+ + G +
Sbjct: 21 LIQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 68 HL----------SITS-KKQLGFMPQQISLY--PEFTIDEMIC--YYGLI--YGMSLQQI 110
+L S + ++ +GF+ + + +++ + I Y +I
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 111 KEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
+ +A L L+ ++ + G LS G+++RV +A L+ P++LILDEP +G+D + E
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARE 198
Query: 170 EIWNHLLYLAESGR--TILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMK 225
+ + L L++S ++ TH+I+E S I L++ G +++ + +L NM
Sbjct: 199 SLLSILDSLSDSYPTLAMIYVTHFIEEITANFSK-ILLLKDGQSIQQGAVEDILTSENMS 257
Query: 226 SL 227
Sbjct: 258 RF 259
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 137 bits (346), Expect = 7e-39
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 20/237 (8%)
Query: 9 IRVENAYKRHSSKLP--YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQN 60
I+++N S K + L+ + + V +LG +G GKTTLL I +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGE-KVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 61 VLNGGNIHLSITSKKQLGFMPQQISLYP-EFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+NG + + + + Y T+++++ Y + G+ E + L+
Sbjct: 61 FINGMEVR---KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALK- 116
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L +RK LS GQ V ++ L PE++ LDEP +D I Y+
Sbjct: 117 -LGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI---SRYIK 172
Query: 180 ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
E G+ ++ TH +D + + L LLE ++ + LL+
Sbjct: 173 EYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLV 229
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 130 bits (330), Expect = 1e-36
Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 18/232 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ VEN + ++ ++ +L + K I ++LG +GCGK+TLL + G + G I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMIC-----YYGLIYGMSLQQIKEKAEYLQALLH 122
+ + +GF+PQ S +++ +++ + + A L+
Sbjct: 63 EVY----QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-YQVAMQALDYLN 117
Query: 123 LNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-E 180
L H R+ SLSGGQ++ + +A + + +L++LDEPTS +D + + + L+ LA
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
T++ TTH ++ ++ L+ K +L ++L +F
Sbjct: 178 QNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTS----ENLTALF 225
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 122 bits (308), Expect = 3e-33
Identities = 52/242 (21%), Positives = 111/242 (45%), Gaps = 17/242 (7%)
Query: 8 AIRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64
I V N + R + L+ + + + + + G +G GK+TLL + G
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 65 GNIHLSITSKKQLGFMPQQISL---YPE---F--TIDEMICYYGLI-YGMSLQQIKEKAE 115
G++ +K+ + + I + YPE F + + + + + + + +
Sbjct: 62 GDVLYD-GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVPLVKK 119
Query: 116 YLQAL-LHLNHFKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
++ + L + FK + LSGG++RRV++A ++H+P++LILDEP G+D ++
Sbjct: 120 AMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179
Query: 174 HLLYLAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+ G+T+++ +H I+ + ++ KG + + LEKY+ + L
Sbjct: 180 IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML 239
Query: 233 LL 234
++
Sbjct: 240 VM 241
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 115 bits (291), Expect = 5e-30
Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 18/224 (8%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
A+ + + K + VL+ + +++ I ++GASGCGKTTLL C+ +G+
Sbjct: 3 AALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 60 NVLNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKA 114
L+G I T+ +++LG++ Q+ L+P T+ I YGL Q +++
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNI-AYGLGNGKGRTAQERQRI 119
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
E + L ++ R LSGGQQ+R +LA L DPEL++LDEP S +D + +I
Sbjct: 120 EAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
Query: 174 HLLYL-AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPP 215
++ +G++ + +H +EA + + I +M++G +L+ + P
Sbjct: 180 DMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 113 bits (284), Expect = 6e-30
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 39 YSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS----KKQLGFMPQQISLYPEFT 91
LLG +G GK+ L I G + G + L IT ++ +GF+PQ +L+P +
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHD 150
+ I Y GL + + + + L + H RK LSGG+++RV+LA L+
Sbjct: 87 VYRNIAY-GL-RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 151 PELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEA-KKSHMIGLMRKGI 208
P LL+LDEP S +D + L ++ E IL TH + EA + + +M G
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204
Query: 209 LLEESPPKVLLEKYN 223
++E+ K E ++
Sbjct: 205 IVEKGKLK---ELFS 216
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 112 bits (283), Expect = 2e-29
Identities = 64/251 (25%), Positives = 125/251 (49%), Gaps = 27/251 (10%)
Query: 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI---- 56
M L+D ++VE +S L + M +++ + ++LG +G GK+TL
Sbjct: 1 MSLEDY-ILKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58
Query: 57 ---TGQNVLNGGNIHLSITSKKQLGFMPQQISL---YPE---F--TIDEMICYYGLI-YG 104
+G+ + + I S+K + + + I + P+ F ++ + + + G +
Sbjct: 59 KPSSGRILFDNKPID---YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF-GAVNMK 114
Query: 105 MSLQQIKEKAEYLQALLHLNHFKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163
+ +I+++ + + H K K LS GQ++RV++A L+ +P++LILDEPT+G+
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 164 DPVIAEEIWNHLLYL-AESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEK 221
DP+ EI L+ + E G TI+I TH ID + +M++G ++ + PK + +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 222 YNMKSLEDVFL 232
+ + V L
Sbjct: 235 KEV--IRKVNL 243
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 113 bits (286), Expect = 2e-29
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 13/223 (5%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
I K + + + +++ + LLG SG GKTT+L I G
Sbjct: 10 HGSMTIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 64 GGNIHL---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAE 115
G++ + +T K+ +G + Q +L+ T+ + + + GL + ++ +
Sbjct: 69 KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSF-GLREKRVPKDEMDARVR 127
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L + L + R LSGGQQ+RV+LA L P++L+ DEP + ID I E+
Sbjct: 128 ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF 187
Query: 175 LLYL-AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPP 215
+ + E G T + TH +EA + + + ++ +G + + P
Sbjct: 188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 110 bits (277), Expect = 5e-29
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 16/218 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
+R EN K +L + ++V+K S++GASG GK+TLL + G+
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 62 LNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
L G + LS+ ++LGF+ Q L PE T E + L G ++ KE+ E
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 116 YLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
YL + L L RK LSGG+Q+RV++A L ++P LL DEPT +D + + +
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
L + E G +I++ TH + A+ +H M+ G ++ E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 111 bits (279), Expect = 1e-27
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ 83
+ L ++ I +LG +G GKTT + G+ + G++ K+ L + PQ+
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE---KQILSYKPQR 338
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVS 142
I + T+ + + +L E + L+L+ LSGG+ +++
Sbjct: 339 IFPNYDGTVQQYL---ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY 395
Query: 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTH 190
+A TL + +L +LD+P+S +D + + + E I H
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Score = 103 bits (260), Expect = 5e-25
Identities = 39/221 (17%), Positives = 95/221 (42%), Gaps = 23/221 (10%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP-QQISLYPE- 89
T + +TI +LG +G GKTT+L + G+ + N G+ + + + L ++I Y +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 90 ------------FTIDEM--ICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLS 134
++ + ++ + K + ++ LL++ + + + LS
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILS 140
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH---Y 191
GG +R+ +A +LL + ++ I D+P+S +D + + L + + +++ H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIV 199
Query: 192 IDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+D + +I ++ + K + + + +L
Sbjct: 200 LDYL--TDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYL 238
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 109 bits (274), Expect = 1e-26
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 2 DLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61
D++ + + K + S L+ ++K + ++G +G GKTT + + G
Sbjct: 351 DVERETLVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407
Query: 62 LNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
G + +T + PQ I E T+ E++ I L K E L+ L
Sbjct: 408 PTEGKVEWDLTVAYK----PQYIKAEYEGTVYELL---SKIDSSKLNSNFYKTELLKPLG 460
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAE 180
++ + R LSGG+ +RV++A TLL D ++ +LDEP++ +D + + + +
Sbjct: 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520
Query: 181 SGRTILITTH 190
+ +T L+ H
Sbjct: 521 NEKTALVVEH 530
Score = 102 bits (255), Expect = 3e-24
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 27/171 (15%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLS--ITSKKQLG------------------FM 80
++G +G GKTT + + GQ + N + S + G
Sbjct: 122 IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181
Query: 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQR 139
PQ + L P+ + + + K E + L L + R+ LSGG+ +
Sbjct: 182 PQYVDLLPKAVKGK------VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQ 235
Query: 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
RV++A LL DEP+S +D ++ + LA G+ +L+ H
Sbjct: 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 104 bits (261), Expect = 2e-26
Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 50/271 (18%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
+ V + +KR+ VL + + + + S++G+SG GK+T L CI G
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 61 VLNGGNIHLSITSKKQLGFMP---------------QQISLYPEFTIDEMICYYGLIY-- 103
++NG NI+L QL Q +L+ T+ E + I
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVL 122
Query: 104 GMSLQQIKEKAEYLQALLHLNHFKRKC--GSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
G+S +E+A A + ++ + LSGGQQ+RVS+A L +P++L+ DEPTS
Sbjct: 123 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+DP + E+ + LAE G+T+++ TH + A+ S + + +G + EE P
Sbjct: 183 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP----- 237
Query: 221 KYNMKSLEDVFLLLSSKQQHDRIEQRRKSFL 251
E VF Q R+ + FL
Sbjct: 238 -------EQVF----GNPQSPRL----QQFL 253
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 103 bits (259), Expect = 4e-26
Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 38/258 (14%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I V K S VL + + +++ + ++G SG GK+T L C+ G+ +
Sbjct: 25 IDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 62 LNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAE 115
++G N+ T+ ++++G + Q+ +L+P T+ I + ++ + KA
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAM 141
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L + L SLSGGQ +RV++A L +P++++ DEPTS +DP + E+ +
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 175 LLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLL 233
+ LA G T+++ TH + A++ + M G ++EE P ED+F
Sbjct: 202 MKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP------------EDLF-- 247
Query: 234 LSSKQQHDRIEQRRKSFL 251
+ QH+R K+FL
Sbjct: 248 --DRPQHERT----KAFL 259
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 104 bits (263), Expect = 5e-26
Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 18/224 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +E+ ++ + + LD L + V+ + +LG +G GKT L I G +V + G I
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 69 L---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
L +T K + F+ Q SL+P + + + + G+ + + ++
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF-GMRMKKIK---DPKRVLDTARD 114
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + H R +LSGG+Q+RV+LA L+ +P++L+LDEP S +DP E L L
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 180 ES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
+ T+L TH EA+ + I ++ G L++ P+ + EK
Sbjct: 175 KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 107 bits (268), Expect = 7e-26
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL+ S I ++G +G GKTTL+ + G + G K + PQ+I
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG----QDIPKLNVSMKPQKI 422
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSL 143
+ T+ ++ + I G L + + L ++ ++ LSGG+ +RV++
Sbjct: 423 APKFPGTVRQLF--FKKIRGQFLN--PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAI 478
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTH 190
+ L ++ ++DEP++ +D + ++ + +T I H
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 105 bits (263), Expect = 3e-25
Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 43/222 (19%)
Query: 6 KC---AIRVEN-----------AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTT 51
KC AI++ N Y +S KL + L T + + L+G +G GK+T
Sbjct: 64 KCPFDAIQIINLPTNLEAHVTHRYSANSFKL-HRLP----TPRPGQVLGLVGTNGIGKST 118
Query: 52 LLSCITGQNVLNGGNIHLSITSKKQLG----------------------FMPQQISLYPE 89
L + G+ N G ++ + PQ + P
Sbjct: 119 ALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP- 177
Query: 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLL 148
I + G + + +++ E + +L L + KR LSGG+ +R ++ ++ +
Sbjct: 178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV 237
Query: 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+ ++ + DEP+S +D + L + ++ H
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 99.9 bits (250), Expect = 6e-25
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----QL 77
LD + ++V K + ++G +G GK+TL++ ITG + G ++ IT+K+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 78 G----FMPQQISLYPEFTIDE--MICYY--------GLIYGMSLQQ---IKEKAEYLQAL 120
G F Q E T+ E +I L Y + + + EKA +
Sbjct: 83 GIVRTF--QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L L+H RK G LSGGQ + V + L+ +P+++++DEP +G+ P +A +I+NH+L L
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 180 ESGRTILITTH 190
G T LI H
Sbjct: 201 AKGITFLIIEH 211
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 99 bits (250), Expect = 6e-25
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 29/226 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN------VLNGGNIHLSITSK---K 75
L L V+ I L+G +G GK+TLL+ + G G + + ++
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLE-AWSATKLAL 73
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
++ QQ + + + + E + L L+ R LS
Sbjct: 74 HRAYLSQQQTPPFATPVWHYL-----TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 135 GGQQRRVSLAITLL-------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
GG+ +RV LA +L +LL+LDEP + +D + L L++ G I++
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVM 188
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPK-VLLEKYNMKSLEDVF 231
++H ++ + +H L++ G +L + VL +L +
Sbjct: 189 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP----PNLAQAY 230
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 100 bits (250), Expect = 1e-23
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
L+ ++K + ++G +G GKTT + + G G I +T + PQ I
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYK----PQYI 356
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSL 143
E T+ E++ S E L L + R+ LSGG+ +RV++
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTE----LLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH 190
A TLL D ++ +LDEP++ +D + + +L E +T L+ H
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 460
Score = 98.5 bits (246), Expect = 4e-23
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 27/180 (15%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNV--LNGGNIHLSITSKKQLG----------- 78
V++ + ++G +G GK+T + + GQ + L G N + G
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 79 ----FM---PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130
PQ + L P+ + +I + K E + L L + +R+
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGK------VIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGG+ +RV++A LL + DEP+S +D + L+E G+++L+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 94.9 bits (237), Expect = 3e-23
Identities = 58/236 (24%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
++++N K + ++ Y L + + +++ S++G SG GK+T+L+ I G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 60 NVLNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDE-----MICYYGLIYGMSLQ 108
++ + L+ + ++GF+ QQ +L P T E +I + MS +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI--FKYRGAMSGE 119
Query: 109 QIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
+ +++A + L K LSGGQQ+RV++A L ++P +++ D+PT +D
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 167 IAEEIWNHLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
E+I L L E G+T+++ TH I+ A+ I ++ G + E + ++
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDDR 235
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 94.3 bits (235), Expect = 4e-22
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 9 IRVENAYKRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
I++ N K + L+ + + V IY ++GASG GK+TL+ C+ G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 60 NVLNGGNIHLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
+++G + + S+ +L G + Q +L T+ + + ++K
Sbjct: 85 VLVDGQEL--TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 113 KAEYLQALLHLNHFKRKC--GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ L +L+ L K +LSGGQ++RV++A L +P++L+ D+ TS +DP
Sbjct: 143 RVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 171 IWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
I L + G TIL+ TH +D K+ + ++ G L+E+
Sbjct: 202 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 91.2 bits (227), Expect = 5e-21
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I V+N K LD + + ++ + +LG SG GKTT + I G +V + G ++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 69 LS---ITSKKQLGFMP---------QQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAE 115
+ S +L P Q +LYP T E I + L MS ++I+++ E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-PLTNMKMSKEEIRKRVE 122
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ +L ++H LSG QQ+RV+LA L+ DP LL+LDEP S +D
Sbjct: 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 91.3 bits (226), Expect = 2e-20
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 36/164 (21%)
Query: 39 YSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI-SLYPEFTIDEMIC 97
Y + G +GCGK+TL+ I V + + ++ I + + ++ + +
Sbjct: 464 YGICGPNGCGKSTLMRAIANGQVDG-----FPTQEECRTVYVEHDIDGTHSDTSVLDFVF 518
Query: 98 YYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155
S KE + +LSGG + +++LA +L + ++L+
Sbjct: 519 -------ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571
Query: 156 LDEPTSGIDPVIAEEIWNHL---------LYLAESGRTILITTH 190
LDEPT NHL YL G T + +H
Sbjct: 572 LDEPT------------NHLDTVNVAWLVNYLNTCGITSITISH 603
Score = 61.6 bits (149), Expect = 1e-10
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 21/74 (28%)
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL---------L 176
+ LSGGQ+ ++ LA P L++LDEPT N+L
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT------------NYLDRDSLGALSK 942
Query: 177 YLAESGRTILITTH 190
L E ++I TH
Sbjct: 943 ALKEFEGGVIIITH 956
Score = 50.0 bits (119), Expect = 5e-07
Identities = 33/251 (13%), Positives = 80/251 (31%), Gaps = 14/251 (5%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
K K ++V N ++ + + S+ +++G +G GK+TL++ +TG+ +
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726
Query: 64 GGNIHLSITSKKQLGFMPQ-QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
G ++ + + ++ Q + Y + + Q +
Sbjct: 727 SGEVYTHENCR--IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINEN 784
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
K + G +R + G + + E W ++ + +
Sbjct: 785 DAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAW 844
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDR 242
++ K M++ + + P L + ++ + L H R
Sbjct: 845 IPR---GELVESHSKMVAEVDMKEALASGQFRP---LTRKEIEEHCSMLGLDPEIVSHSR 898
Query: 243 IE-----QRRK 248
I Q+ K
Sbjct: 899 IRGLSGGQKVK 909
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 88.6 bits (220), Expect = 2e-19
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 23/216 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIH-LSITS-KK 75
VL L + V+K +L+G+SGCGK+T++ + G L+G I L++ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-----LNH-FKRK 129
QLG + Q+ L+ +I E I Y +S ++I A+ +A +H L + +
Sbjct: 1108 QLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAK--EANIHQFIDSLPDKYNTR 1164
Query: 130 CGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A L+ P +L+LDE TS +D +E++ L A GRT
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDKAREGRTC 1223
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I +++ G + E + LL +
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Score = 88.2 bits (219), Expect = 2e-19
Identities = 55/216 (25%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI-HLSITS-KK 75
+L L + V+ +L+G SGCGK+T + + G ++G +I +++ ++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-----L-NHFKRK 129
+G + Q+ L+ TI E I Y G +++ +I++ + +A + L + F
Sbjct: 465 IIGVVSQEPVLFAT-TIAENIRY-GRE-DVTMDEIEKAVK--EANAYDFIMKLPHQFDTL 519
Query: 130 CG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A L+ +P++L+LDE TS +D +E + L A GRT
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTT 578
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I G+++E+ L+ +
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 83.7 bits (208), Expect = 4e-19
Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 61 VLNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
+++G ++ ++Q+G + Q L +I + I GMS++++ A+
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 119 A---LLHL-NHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
A + L + G LSGGQ++R+++A L+++P++LI DE TS +D
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
I ++ + + GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 184 IMRNMHKICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 80.7 bits (200), Expect = 7e-18
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 22/216 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-KK 75
VL L T+ + +L+G +G GK+T+ + + G+ +L+G +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK----CG 131
Q+ + Q+ L+ + E I Y GL ++++I A A ++ F + G
Sbjct: 94 QVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG 151
Query: 132 ----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA--ESGRTI 185
LSGGQ++ V+LA L+ P LLILD TS +D + LLY + + RT+
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG-NQLRVQRLLYESPEWASRTV 210
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L+ T + A+++H I +++G + E+ L+E+
Sbjct: 211 LLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 79.8 bits (198), Expect = 1e-17
Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 24/209 (11%)
Query: 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS- 73
+L + Q ++I + G SG GK+T+ S + G+ ++G I ++S+ +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL------NHFK 127
+ Q+GF+ Q ++ TI E + Y GL + + + + + A +
Sbjct: 75 RSQIGFVSQDSAIMAG-TIRENLTY-GLEGDYTDEDLWQVLD--LAFARSFVENMPDQLN 130
Query: 128 RKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ G +SGGQ++R+++A L +P++L+LDE T+ +D + L L + GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GR 189
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLEE 212
T L+ H + + I + KG +
Sbjct: 190 TTLVIAHRLSTIVDADKIYFIEKGQITGS 218
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 77.2 bits (191), Expect = 1e-16
Identities = 56/233 (24%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 8 AIRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TG 58
I + +Y + ++ L + + T +L+G +G GK+T+ + G
Sbjct: 17 NIEFSDVNFSYPKQTNH--RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 59 QNVLNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+ G N+ + S + +G +PQ L+ E TI I Y G + + +++ + +
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILY-GKL-DATDEEVIKATKS 131
Query: 117 LQA---LLHL-NHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
Q + L + G LSGG+++R+++A LL DP+++I DE TS +D
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 169 EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ L + RT++I H + + I L+ KG ++E+ K LL+
Sbjct: 192 YLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 76.0 bits (188), Expect = 3e-16
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 35/186 (18%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMP 81
+ + + V + I +L+GA+G GKTT LS I G G I IT+K
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP-----A 75
Query: 82 QQIS------------LYPEFTIDEMICYYGLIYGMSLQQIKEK-AEYLQALLHLNHF-- 126
I+ ++PE T+ E L+ G ++ KE L+ + L F
Sbjct: 76 HVINRMGIALVPEGRRIFPELTVYE-----NLMMGAYNRKDKEGIKRDLEWIFSL--FPR 128
Query: 127 -----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
K+ G+LSGG+Q+ +++ L+ P+LL++DEP+ G+ P++ E++ + + +
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 182 GRTILI 187
G TIL+
Sbjct: 189 GTTILL 194
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 77.6 bits (192), Expect = 4e-16
Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 26/220 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIH-LSITS-KK 75
+ +++ ++ +L+G SG GK+T+LS + +G L+G +I L+ +
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 76 QLGFMPQQISLYPEF--TIDEMICYYGL--IYGMSLQQIKEKAEYLQALLHLNHFKRK-- 129
++G + Q+ L F +I E I Y G ++ ++I+ AE A+ + +F +
Sbjct: 419 KIGTVSQEPIL---FSCSIAENIAY-GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFN 474
Query: 130 --CG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
G LSGGQ++R+++A LL +P++L+LDE TS +D E + L GR
Sbjct: 475 TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD-AENEYLVQEALDRLMDGR 533
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
T+L+ H + K ++M+ ++ +G + E + LL K N
Sbjct: 534 TVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPN 573
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 73.8 bits (182), Expect = 6e-15
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---------QQISLYPEFT 91
LLG SG GK+TLL I G G I+ K P Q +LYP T
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIY--FDEKDVTELPPKDRNVGLVFQNWALYPHMT 91
Query: 92 IDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
+ + I + L + ++I +K + +LH++ R LSGGQQ+RV++A L+
Sbjct: 92 VYKNIAF-PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150
Query: 150 DPELLILDEPTSGID 164
+PE+L+LDEP S +D
Sbjct: 151 EPEVLLLDEPLSNLD 165
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 71.0 bits (175), Expect = 1e-14
Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 42/237 (17%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ +EN VL + +++ + ++ G++G GKT+LL I G+ + G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 66 NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
I ++ F Q + P TI E I + G+ Y ++ Y +
Sbjct: 64 KIKH----SGRISFCSQFSWIMPG-TIKENIIF-GVSY--------DEYRYRSVI----- 104
Query: 126 FKRKCG---------------------SLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ C +LSGGQ+ R+SLA + D +L +LD P +D
Sbjct: 105 --KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ +EI+ + + +T ++ T ++ KK+ I ++ +G L
Sbjct: 163 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 72.2 bits (178), Expect = 3e-14
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQN 60
+ N + + L + + + +L+G SG GK+T+ S IT G
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 61 VLNGGNIH-LSITS-KKQLGFMPQQISLYPEF--TIDEMICYYGLIYGMSLQQIKEKAEY 116
+++G ++ ++ S + Q+ + Q + L F T+ I Y S +QI+E A
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHL---FNDTVANNIAY-ARTEEYSREQIEEAAR- 455
Query: 117 LQALLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
A F K LSGGQ++R+++A LL D +LILDE TS +D
Sbjct: 456 -MAYAM--DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 71.3 bits (175), Expect = 4e-14
Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 39/239 (16%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQNV 61
+ V++ +++ +L+ + ++ LLG +G GK+TLLS G+
Sbjct: 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQ 78
Query: 62 LNGGNIHLSI---TSKKQLGFMPQQISLY---------P--EFTIDEMICYYGLIYGMSL 107
++G + SI +K G +PQ++ ++ P + D+ I +
Sbjct: 79 IDGVSWD-SITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS-DQEI-WKVA----DE 131
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDP- 165
++ E L+ G LS G ++ + LA ++L ++L+LDEP++ +DP
Sbjct: 132 VGLRSVIEQFPG--KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 166 ---VIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+I + + T+++ I+ + ++ + + + L
Sbjct: 190 TYQIIRRTLKQAF-----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 70.7 bits (174), Expect = 6e-14
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMP----------QQISLY 87
LLG SGCGKTT L I G + G I++ + ++ F+P Q +LY
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
Query: 88 PEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAI 145
P T+ + I + L + + Q+I ++ + LL L RK LSGGQ++RV+L
Sbjct: 94 PHMTVYDNIAF-PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152
Query: 146 TLLHDPELLILDEPTSGID 164
++ P++ ++DEP S +D
Sbjct: 153 AIVRKPQVFLMDEPLSNLD 171
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 70.7 bits (174), Expect = 9e-14
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQN 60
+ V++ + K L + ++ + +L+G SG GK+T+ + T G
Sbjct: 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 61 VLNGGNIH-LSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
L+G ++ +T+ ++ + Q + L+ + TI I Y + +QI++ A Q
Sbjct: 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAY-AAEGEYTREQIEQAAR--Q 456
Query: 119 ALLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
A H F SLSGGQ++RV++A LL D +LILDE TS +D
Sbjct: 457 A--HAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 70.0 bits (172), Expect = 9e-14
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---------QQISLYPEFT 91
LLG SGCGKTT L I G G I + P Q +++P T
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRI--YFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99
Query: 92 IDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
+ E I + L I +I ++ + LL + R LSGGQ++RV++A ++
Sbjct: 100 VYENIAF-PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158
Query: 150 DPELLILDEPTSGID 164
+P++L++DEP S +D
Sbjct: 159 EPDVLLMDEPLSNLD 173
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 68.3 bits (168), Expect = 1e-13
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 44/237 (18%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+I V NA + P L+ + ++ + + +++G GCGK++LLS + + G++
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+ K + ++PQQ + + ++ E I + G E+ Y +
Sbjct: 63 AI----KGSVAYVPQQAWIQND-SLRENILF-GCQL--------EEPYYRSVI------- 101
Query: 128 RKCG---------------------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
+ C +LSGGQ++RVSLA + + ++ + D+P S +D
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161
Query: 167 IAEEIWNHLLYLAE--SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ + I+ +++ +T ++ TH + + +I +M G + E + LL +
Sbjct: 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 69.5 bits (171), Expect = 1e-13
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---------QQISLYPEFT 91
LLG SGCGKTT L + G G I+ P Q +LYP T
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPTSGEIY--FDDVLVNDIPPKYREVGMVFQNYALYPHMT 91
Query: 92 IDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
+ E I + L +S +++++ + L +++ RK LSGGQQ+RV+LA L+
Sbjct: 92 VFENIAF-PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150
Query: 150 DPELLILDEPTSGID 164
P++L+ DEP S +D
Sbjct: 151 QPKVLLFDEPLSNLD 165
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 69.2 bits (170), Expect = 1e-13
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 31/219 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-KK 75
L + TV +L+G SG GK+T+L + +G ++G +I ++ S +
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQQIKEKAEYLQALLHL------NHF 126
+G +PQ L+ + TI + YG +++ A+ A +H +
Sbjct: 129 HIGVVPQDTVLFND-TI-----ADNIRYGRVTAGNDEVEAAAQ--AAGIHDAIMAFPEGY 180
Query: 127 KRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ + G LSGG+++RV++A T+L P +++LDE TS +D I L +
Sbjct: 181 RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-N 239
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
RT ++ H + + I +++ G ++E + LL +
Sbjct: 240 RTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 69.5 bits (171), Expect = 2e-13
Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 29/234 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
I +++ +++ +L + ++++K + +G SG GK+TL++ I GQ +
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G NI S + Q+G + Q L+ + T+ E I + +++ E A+ A
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP--TATDEEVVEAAKMANA 456
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
H F LSGGQ++R+S+A L++P +LILDE TS +D
Sbjct: 457 --H--DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I L L++ RT LI H + + I ++ G ++E + L+ K
Sbjct: 513 ESIIQEALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 67.8 bits (166), Expect = 3e-13
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 34/245 (13%)
Query: 19 SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG 78
S VL + +++ + ++ G++G GKT+LL I G+ + G I ++
Sbjct: 47 SLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH----SGRIS 102
Query: 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ-----ALLH-LNHFKR---- 128
F Q + P TI E I G+ Y ++ Y L ++ F
Sbjct: 103 FCSQNSWIMPG-TIKENII--GVSY--------DEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 129 ----KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
+LSGGQ+ R+SLA + D +L +LD P +D + +EI+ + + +T
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 185 ILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIE 244
++ T ++ KK+ I ++ +G L D L D+
Sbjct: 212 RILVTSKMEHLKKADKILILHEGSSYFYGTFSEL-----QNLRPDFSSKLMGCDSFDQFS 266
Query: 245 QRRKS 249
R++
Sbjct: 267 AERRN 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 1e-11
Identities = 54/359 (15%), Positives = 109/359 (30%), Gaps = 87/359 (24%)
Query: 16 KRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTL-LSCITGQNVL--NGGNIH-L 69
K + S+L L + + ++ + + G G GKT + L V I L
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 70 SITSKKQLG-FMPQQISLYPEFTIDEMICYYGLI---YGMSLQQIKEK-------AEYLQ 118
++ + + L + ID + + I+ + Y
Sbjct: 188 NLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 119 ALL---------HLNHFKRKC------------GSLSGGQQRRVSL--AITLLHDPELLI 155
LL N F C LS +SL L E+
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 156 L----------DEP--TSGIDP----VIAEEI------WNHLLYLAES--GRTILITTHY 191
L D P +P +IAE I W++ ++ I + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 192 ID--EAKKS-HMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIEQRRK 248
++ E +K + + + P +L + DV ++++ ++ +E++ K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 249 SFLWPIQAIQE------------HTRYLANF-LPLTYPIDSFRSIVFRGFDIFHWQVYY 294
I +I H + ++ +P T+ D + F+ + +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGH 479
Score = 29.8 bits (66), Expect = 1.5
Identities = 34/200 (17%), Positives = 59/200 (29%), Gaps = 69/200 (34%)
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLH---LNHFKRKCGSLSGGQQRRVSLAITLLH 149
E IY ++K K E AL H ++H+
Sbjct: 422 KESTISIPSIY----LELKVKLENEYAL-HRSIVDHYNIPKT-----------------F 459
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID----EAKKSHMIGLMR 205
D + D +D I +HL + R L ++D E K +R
Sbjct: 460 DSD----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-------IR 508
Query: 206 KGILLEESPPKVL-----LEKYN-------------MKSLEDVFL------LLSSKQQHD 241
+ +L L+ Y + ++ D FL L+ SK +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSK--YT 565
Query: 242 RIEQRRKSFLWPIQAIQEHT 261
+ + + + +AI E
Sbjct: 566 DLLRI--ALMAEDEAIFEEA 583
Score = 27.9 bits (61), Expect = 5.1
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 187 ITTHYIDEAKKS---HMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRI 243
I + + D + + M K IL +E +++ K + +F L SKQ+ +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EM 78
Query: 244 EQR------RKSFLWPIQAIQEHTRYLANFLPLTYPIDSFRSIVFRGFDIF 288
Q+ R ++ + + I+ R + +T R ++ +F
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPS---MMTRMYIEQRDRLYNDNQVF 126
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 58.9 bits (142), Expect = 4e-10
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAI------TLLHDPELLILDEPTS 161
++ + ++ + +R LSGG++ + LA L + LLILDEPT
Sbjct: 224 VVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTP 283
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTH 190
+D ++ + + +++ +H
Sbjct: 284 YLDEERRRKLITIMERYLKKIPQVILVSH 312
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 55.2 bits (134), Expect = 9e-09
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 20/138 (14%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ--IS-------LYPEFT 91
+G SGCGK+TLL I G + G++ I K+ P + + LYP +
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 92 I-DEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSL--AIT 146
+ + M +GL + G + I ++ + +L L H RK +LSGGQ++RV++ +
Sbjct: 92 VAENMS--FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 147 LLHDPELLILDEPTSGID 164
+P + +LDEP S +D
Sbjct: 150 --AEPSVFLLDEPLSNLD 165
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 49.7 bits (119), Expect = 8e-08
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 128 RKCGSLSGGQQRRVSLAITL------LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
R LSGG++ + LA L + LLILDEPT +D ++ + +
Sbjct: 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112
Query: 182 GRTILITTHYID 193
+++ +H +
Sbjct: 113 IPQVILVSHDEE 124
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 51.8 bits (125), Expect = 1e-07
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 30/163 (18%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-K 74
VL + +V+ ++ ++LG +G GK+TL++ I G+ ++ ++ + + +
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 75 KQLGFMPQQISLYPEF--TIDEMICYYGLIYGM---SLQQIKEKAEYLQALLHLNHFKRK 129
+ +PQ+ L F TI E + + G + +I E A+ Q +
Sbjct: 417 GHISAVPQETVL---FSGTIKENLKW-----GREDATDDEIVEAAKIAQIHDFIISLPEG 468
Query: 130 CGS--------LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
S SGGQ++R+S+A L+ P++LILD+ TS +D
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 50.2 bits (121), Expect = 5e-07
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 30/144 (20%)
Query: 43 GASGCGKTTLLSCIT-------GQNVLNGGNIHLSITSK---KQLGFMPQQISLYPEFTI 92
G +G GKTT+++ + GQ +++G +I I +G + Q L+ T+
Sbjct: 388 GPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLRSSIGIVLQDTILF-STTV 445
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK------------CGSLSGGQQRR 140
E + Y G + ++IKE A+ L H +HF + LS GQ++
Sbjct: 446 KENLKYGNP--GATDEEIKEAAK----LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499
Query: 141 VSLAITLLHDPELLILDEPTSGID 164
+++ L +P++LILDE TS +D
Sbjct: 500 LAITRAFLANPKILILDEATSNVD 523
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 49.1 bits (117), Expect = 8e-07
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL-------LHDPELLILDEPT 160
E + + +H + +LSGG+Q V+L++ L + E +ILDEPT
Sbjct: 256 YSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILIT 188
+D ++ + + I+IT
Sbjct: 316 VYLDENRRAKLAEIFRKVKSIPQMIIIT 343
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 46.0 bits (109), Expect = 7e-06
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL-LHDP-----ELLILDEPTS 161
I E ++ +R LSGG++ +S+++ + L + + +DE S
Sbjct: 255 FDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFS 314
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTH 190
+D E+I + L L + I+ TH
Sbjct: 315 SLDTENKEKIASVLKELERLNKVIVFITH 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 48/311 (15%), Positives = 85/311 (27%), Gaps = 113/311 (36%)
Query: 61 VLNGGNIHLSITSKKQLGFMPQQI-----SLYPEFTI-----DEMICYYGLI-----YGM 105
L+ G++ + F+ Q+ + PE T DE L+ Y
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 106 SLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRRV-SLAITLLHDPELLILDEPTSGI 163
SL + + ++ Q L L L F+ L G + +LA LL + D
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCY--LEGND---IHALAAKLLQEN-----DTTLVKT 119
Query: 164 DPVI-----AEEIWNH---------LLYLAESGRTILI--------TTHYIDEAKKSHMI 201
+I A + L G L+ T Y +E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE------- 172
Query: 202 GLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIEQRRKSFLWPIQAIQEHT 261
+R L + Y + + I+
Sbjct: 173 --LRD-----------LYQTY-------------------------HVLVGDL--IKFSA 192
Query: 262 RYLANFLPLTYPIDSFRSIVFRGFDIFHW--------QVYYGFLSSTG--W-IVGLT-LV 309
L+ + T + + +G +I W Y L S ++G+ L
Sbjct: 193 ETLSELIRTTLDAEKVFT---QGLNILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLA 247
Query: 310 CWILLRYKNGL 320
+++ G
Sbjct: 248 HYVVTAKLLGF 258
Score = 43.5 bits (102), Expect = 8e-05
Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 92/259 (35%)
Query: 40 SLLGASGCGKTTLLSCI-----TGQNVLNGGNIHLSITSKKQLGFMPQQ----ISLYPEF 90
L GA+G + + + + ++ ++ +IT +G + SL P
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFV--SVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 91 TIDE----------MICYYGLIYGMSLQQIKEKAEYL----------------------- 117
D M+ I ++ +Q+++
Sbjct: 324 LEDSLENNEGVPSPMLS----ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 118 ----QALLHLNHFKRKCGSLSGGQQRRV--S----------LAITL-LHDP------ELL 154
Q+L LN RK + SG Q R+ S L + H +L+
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 155 ILDEPTSGID--------PVIAEEIWNHLLYLAESGRTIL---ITTHYID-----EAKKS 198
D + + PV + L L+ S + I + + K +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 199 HMI-----GLMRKGILLEE 212
H++ G G+L
Sbjct: 500 HILDFGPGGASGLGVLTHR 518
Score = 37.7 bits (87), Expect = 0.005
Identities = 56/380 (14%), Positives = 108/380 (28%), Gaps = 161/380 (42%)
Query: 3 LKDKCAIRVENAYK-RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61
+K K I+ N R +K P+ K + +L A G G L++ GQ
Sbjct: 117 VKTKELIK--NYITARIMAKRPF---------DKKSNSALFRAVGEGNAQLVAIFGGQ-- 163
Query: 62 LNGGNIH--LSITSKKQLGFMPQQI-SLYPEFTIDEMIC------------------YYG 100
GN ++L + + Y + ++I +
Sbjct: 164 ---GNTDDYF-----EEL----RDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 101 LIYGMSLQQ-IKEKA-----EYLQA---------LLHLNHFKRKC--GSLSGGQQRRVSL 143
G+++ + ++ + +YL + ++ L H+ + G+ R
Sbjct: 211 --QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAESGRTILITTHYI---------- 192
T H L+ + + IAE W T+L +I
Sbjct: 269 GATG-HSQGLV------TAV--AIAETDSWESFFVSVRKAITVLF---FIGVRCYEAYPN 316
Query: 193 --------------DEAKKSHMIGLMRKGILLEESPPKVLLEKY---------------- 222
+E S M+ + + E+ ++ Y
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSI--SNLTQEQ------VQDYVNKTNSHLPAGKQVEI 368
Query: 223 -------NM------KSLEDVFLLLSSKQQHDRIEQRRKSFLWPIQAIQEHTRYLANFLP 269
N+ +SL + L L + ++Q R F + ++ FLP
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS------ERKLKFSNRFLP 422
Query: 270 LTYPIDSFRSIVFRGFDIFH 289
+ P FH
Sbjct: 423 VASP--------------FH 428
Score = 32.7 bits (74), Expect = 0.18
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 27/107 (25%)
Query: 86 LYPEFTI-----DEMICYYGLIYGMSLQQI-----KEKAEYLQALLHLNHFKRKCGSLSG 135
LY + ++ YG S+ I HF G G
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI---------HF----GGEKG 1681
Query: 136 GQQRRVSLAITLLHDPELLILDEPT-SGIDPVIAEEIWNH---LLYL 178
+ R A+ + + E I+ + LL
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Score = 30.4 bits (68), Expect = 0.94
Identities = 52/357 (14%), Positives = 99/357 (27%), Gaps = 124/357 (34%)
Query: 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLG-----------ASGCGKTT 51
L+++ + LP + + +T L+G S G+
Sbjct: 33 LQEQF-----------NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 52 --LLSCITG--QNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMI-CYYGLIYGMS 106
L C+T L G +IH ++ +K + Q+ E+I Y
Sbjct: 82 QVLNLCLTEFENCYLEGNDIH-ALAAK-----LLQENDT-TLVKTKELIKNYI---TARI 131
Query: 107 LQQIKEKAEYLQALL-HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLIL-DEPTSGID 164
+ + + AL + + ++ GGQ EL L +
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ----GNTDDYF--EELRDLYQTYHVLVG 185
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
+I + L L + +A+K GL
Sbjct: 186 DLI-KFSAETLSELIRTT----------LDAEKVFTQGL--------------------- 213
Query: 225 KSLEDVFLLLSSK-QQHDRIEQRRKSFL------WP-IQAIQEHTRYLANF------LPL 270
++ L + D K +L P I IQ LA++ L
Sbjct: 214 ----NILEWLENPSNTPD------KDYLLSIPISCPLIGVIQ-----LAHYVVTAKLLGF 258
Query: 271 TYP---IDSFRSIVFRGFDIF---------HWQVYYGFLSSTGWIVGLTLVCWILLR 315
T P + + W+ ++ + +T++ +I +R
Sbjct: 259 T-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-----ITVLFFIGVR 309
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 35.2 bits (82), Expect = 0.018
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 23/96 (23%)
Query: 107 LQQIKEKAEYLQ---ALLH--LNH-FKRKCGSLSGGQQRRVS-LAITLLHDPELLILDEP 159
++EK L+ LL +N F SGG+++R L + +L +PEL ILDE
Sbjct: 140 QDLMEEKIALLKMPEDLLTRSVNVGF-------SGGEKKRNDILQMAVL-EPELCILDES 191
Query: 160 TSGID----PVIAEEIWNHLLYLAESGRTILITTHY 191
SG+D V+A+ + N L + R+ +I THY
Sbjct: 192 DSGLDIDALKVVADGV-NS---LRDGKRSFIIVTHY 223
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 35.6 bits (82), Expect = 0.023
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 38 IYSLLGASGCGKTTLLSCI-----TGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
++ G +GCGK+ L + + +GG +SI + + G + + +L
Sbjct: 149 WVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQ 208
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
+E I+E + L+ L+ H
Sbjct: 209 EESFSQR------LPLNIEEAKDRLRVLMLRKH 235
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 34.8 bits (81), Expect = 0.025
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 70/211 (33%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN---------VLNGGNI-HLSITSK 74
+L + + V K +++L+G +G GK+TL + G +L+G NI LS +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 75 KQLG-FMPQQISLYP----------------------EFTIDEMICYYGLIYGMSLQQIK 111
+ G F+ Q YP E + E ++K
Sbjct: 78 ARKGLFLAFQ---YPVEVPGVTIANFLRLALQAKLGREVGVAEF-----------WTKVK 123
Query: 112 EKAEYLQ---ALLH--LNH-FKRKCGSLSGGQQRRVS-LAITLLHDPELLILDEPTSGID 164
+ E L + L LN F SGG+++R L + +L +P +LDE SG+D
Sbjct: 124 KALELLDWDESYLSRYLNEGF-------SGGEKKRNEILQLLVL-EPTYAVLDETDSGLD 175
Query: 165 ----PVIAEEIWNHLLYLAESGRTILITTHY 191
V+A + N + L+ THY
Sbjct: 176 IDALKVVARGV-NA---MRGPNFGALVITHY 202
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 32.9 bits (76), Expect = 0.14
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 133 LSGGQQRRVSLAITLLHDPE----LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGG+ +R+ LA T L + +LDEPT+G+ P E + L+ L ++G T++
Sbjct: 731 LSGGEAQRIKLA-TELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV 789
Query: 189 THYID 193
H +
Sbjct: 790 EHKMQ 794
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 32.3 bits (73), Expect = 0.16
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG 78
L+G +G GK+ + I G+ V + G SIT K +
Sbjct: 34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKR 71
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 30.8 bits (69), Expect = 0.36
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 31 MTVQKSTIYSLLGASGCGKTTL 52
MT + + ++G SG GKTT+
Sbjct: 24 MTGEPTRHVVVMGVSGSGKTTI 45
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 31.2 bits (70), Expect = 0.42
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGF 79
L+G +G GK+ + I + ++T
Sbjct: 27 LVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ 65
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.4 bits (68), Expect = 0.47
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 31 MTVQKS--TIYSLLGASGCGKTTL---LSCITGQNVLNGGNIHLSITSKKQLGFMP 81
M+ IY L+G SG GK+ + ++ L+G +H +K P
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.9 bits (71), Expect = 0.57
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 133 LSGGQQRRVSLAITLLHDPE----LLILDEPTSGIDPVIAEEIWNHLLY----LAESGRT 184
LSGG+ +R+ LA + L + L ILDEPT G+ E++ L+ L + G T
Sbjct: 806 LSGGEAQRIKLA-SELRKRDTGRTLYILDEPTVGLH---FEDV-RKLVEVLHRLVDRGNT 860
Query: 185 ILITTHYID 193
+++ H +D
Sbjct: 861 VIVIEHNLD 869
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 30.5 bits (69), Expect = 0.57
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
Q V L I + E + P +G DP +A L + + + I+ H
Sbjct: 185 EQSGSVLLTIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGH 239
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 30.1 bits (68), Expect = 0.74
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 31/113 (27%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI-------- 92
+ G GKT+LL +L ++ ++ S + T+
Sbjct: 17 IAGPQNSGKTSLL------TLLTTDSVRPTVVS---QEPLSAADYDGSGVTLVDFPGHVK 67
Query: 93 --DEMICYY--------GLIY----GMSLQQIKEKAEYLQALLHLNHFKRKCG 131
++ Y GLI+ + +++ AE+L +L + + G
Sbjct: 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 30.1 bits (68), Expect = 0.74
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 23/109 (21%)
Query: 41 LLGASGCGKTTLLSCITGQNVLN----GGNIHLSITSKKQLGF--MPQQISLYPEFTIDE 94
+ G GKT+LL+ +T +V + + + P + L + +
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLS--- 109
Query: 95 MICYY--------GLIY----GMSLQQIKEKAEYLQALLHLNHFKRKCG 131
Y GLI+ + +++ AE+L +L + + G
Sbjct: 110 --DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.8 bits (68), Expect = 1.3
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 17/71 (23%)
Query: 133 LSGGQQRRVSLAITLLHDPE----LLILDEPTSG--IDPVIAEEIWNHLLY----LAESG 182
LSGG+ +RV LA LH L ILDEPT+G +D + LL L ++G
Sbjct: 544 LSGGEAQRVKLA-AELHRRSNGRTLYILDEPTTGLHVDDI------ARLLDVLHRLVDNG 596
Query: 183 RTILITTHYID 193
T+L+ H +D
Sbjct: 597 DTVLVIEHNLD 607
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 29.4 bits (67), Expect = 1.3
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSI 71
SG GK++L+ + + +S+
Sbjct: 23 APSGAGKSSLIQALLKTQ--PLYDTQVSV 49
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.4 bits (67), Expect = 1.4
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71
M +K + L G SG GK T+ I + SI
Sbjct: 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED---PSTSYKYSI 38
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.5 bits (66), Expect = 1.8
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 26/168 (15%)
Query: 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT---SKKQLGFMPQQISLYPEFT 91
+ G SG GKT ++ + +T + + + +
Sbjct: 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKL 97
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDP 151
+DE + Q L AL+ R++ AI +
Sbjct: 98 VDEGKLFILDASPDPEGQEVVGGFDLSALI-----------------ERINYAIQ-KYRA 139
Query: 152 ELLILD-----EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
+ +D V+ E++ + L + G T ++TT I+E
Sbjct: 140 RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE 187
Score = 27.6 bits (61), Expect = 6.6
Identities = 28/175 (16%), Positives = 47/175 (26%), Gaps = 43/175 (24%)
Query: 26 LDKLCMT-VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
LD++C K +I GA+G GKT L+S N
Sbjct: 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERA----------------- 312
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL----QALLHLNHFKRKCGS---LSGGQ 137
+ F +E S Q+ A + + N K C
Sbjct: 313 -IL--FAYEE-----------SRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358
Query: 138 QRRVSLAITLLHDPELLILD----EPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
++ + P + +D + + + Y + T L T
Sbjct: 359 HLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.0 bits (65), Expect = 2.0
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59
HSS + + L + + + G + GK+T+ I
Sbjct: 5 HHHSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 29.0 bits (65), Expect = 2.0
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 147 LLHDPELLILDEPTSGI--DPVIAEEIWNHLLYLAESGRTILITTH 190
+ +G+ D + + +H+ AES ++ H
Sbjct: 214 ACYTATNYGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGH 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.5 bits (64), Expect = 2.1
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 37 TIYSLLGASGCGKTT---LLSCITGQNVLNGGNIHLSITS--KKQLGFMP 81
T+ L G C K+T LS ++ G + L+ + K F
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNK 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 29.1 bits (66), Expect = 2.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTL 52
V N YKR L + + KS I L+G +G GKT L
Sbjct: 31 VYNHYKR----LRNGDTSNGVELGKSNIL-LIGPTGSGKTLL 67
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 28.8 bits (65), Expect = 2.2
Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 53/181 (29%)
Query: 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDE 94
+ +L G G GKT + + +G +Y T +E
Sbjct: 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC------------------IY--VTTEE 61
Query: 95 MICYYGLIYGMSLQQIKEKAE----YLQALLHLNHFKRKCGSLSGGQQ------------ 138
S I +A+ + + Q
Sbjct: 62 -----------SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELV 110
Query: 139 RRVSLAI-TLLHDPELLILDEPTSGI---DPVIAEEIWNHLL-YLAESGRTILITTHYID 193
+V A L + L++D S + P +A +I +L L + TI T+ Y
Sbjct: 111 NKVIEAKQKLGYGKARLVID-SVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAI 169
Query: 194 E 194
Sbjct: 170 T 170
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.0 bits (66), Expect = 2.3
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 27/76 (35%)
Query: 133 LSGGQQRRVSLAITLLHDPELL---------ILDEPTSG--IDPVIAEEIWNHLLY---- 177
LSGG+ +RV LA EL ILDEPT+G +D + LL
Sbjct: 846 LSGGEAQRVKLA------AELHRRSNGRTLYILDEPTTGLHVDDI------ARLLDVLHR 893
Query: 178 LAESGRTILITTHYID 193
L ++G T+L+ H +D
Sbjct: 894 LVDNGDTVLVIEHNLD 909
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.8 bits (64), Expect = 2.3
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 41 LLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSKKQLGFM-------PQQISLYP 88
L+G SG GK+++ S I G I + + + LG M Q
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 89 EFTIDEMICYY----GLIYGMSLQQ---IKEKAEYLQALLHL 123
+ + + LI+ ++ +K+ + +AL L
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQL 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.2 bits (62), Expect = 2.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71
L G S GK+ ++ C+ Q+VL + +
Sbjct: 8 LNGGSSAGKSGIVRCL--QSVLPEPWLAFGV 36
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.0 bits (66), Expect = 2.4
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 17/71 (23%)
Query: 133 LSGGQQRRVSLAITLLHDPE----LLILDEPTSG--IDPVIAEEIWNHLLY----LAESG 182
LSGG+ +RV LA + L + ILDEPT+G D + LL L + G
Sbjct: 864 LSGGEAQRVKLA-SELQKRSTGRTVYILDEPTTGLHFDDI------RKLLNVINGLVDKG 916
Query: 183 RTILITTHYID 193
T+++ H +D
Sbjct: 917 NTVIVIEHNLD 927
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 28.4 bits (63), Expect = 2.5
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 34 QKSTIYSLLGASGCGKTTL---LSCITGQNVLNGGNIH 68
Q + + G GKTTL L+ +L+
Sbjct: 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.7
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 237 KQQHDRIEQRRKSFLW-----PIQAIQ 258
KQ +++ K L+ P AI+
Sbjct: 19 KQALKKLQASLK--LYADDSAPALAIK 43
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 28.3 bits (64), Expect = 2.7
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71
M I L SGCGKTT+ + + + NI S+
Sbjct: 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK---NNIVKSV 59
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 28.1 bits (62), Expect = 2.8
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 28/165 (16%)
Query: 41 LLGASGCGKTTL---LSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMIC 97
++G SG GK+++ ++ G + G +H +K M + I L + +
Sbjct: 23 VMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRK----MSEGIPLTDDDRWPWLAA 78
Query: 98 YYGLIYGMSLQQI---KEKAEYLQALLHLN----HFKRKCGSLSGGQQR---------RV 141
+ + K Y L F GS S +R
Sbjct: 79 IGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPS 138
Query: 142 SLAITLLHDPELLILDEPTSGID-----PVIAEEIWNHLLYLAES 181
SL T L E + T +D I E L LAE+
Sbjct: 139 SLLQTQLETLEDPRGEVRTVAVDVAQPLAEIVREALAGLARLAEN 183
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.5 bits (63), Expect = 2.9
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG 78
L+G +G GK+ + I GQ S+T G
Sbjct: 26 LVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG 63
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 28.2 bits (62), Expect = 3.2
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 33 VQKSTIYSLL--GASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86
+ ++L+ G SG GK+TL++ + ++ + S KK + ++ +
Sbjct: 3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 58
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 28.3 bits (63), Expect = 3.2
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 1 MDLKDKCAIRVENAYKRHSSKLPYV------LDKLCMTVQKSTIYSLLGASGCGKTTLLS 54
+L+ + RV + + +L Y+ L L + + + G GK+TLL
Sbjct: 126 AELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLK 185
Query: 55 CITGQNV 61
+T
Sbjct: 186 ALTTAKP 192
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 28.4 bits (64), Expect = 3.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 11 VENAYKR--HSSKLPYVLDKLCMT---------VQKSTIYSLLGASGCGKTTL 52
V N YKR KL ++ + KS I L+G +G GKT +
Sbjct: 37 VYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNIL-LIGPTGSGKTLM 88
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 28.5 bits (64), Expect = 3.2
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 102 IYGMSLQQIKEKAEYLQAL 120
+ M +I+ + +Y L
Sbjct: 9 LQPMKFSEIRNRLDYFVEL 27
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 27.7 bits (61), Expect = 3.5
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 41 LLGASGCGKTTL-LSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY 98
+ G + GK+ L L+ I G ++ I L + + +G P + Y T +I
Sbjct: 21 ITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYILITGIGIIDV 80
Query: 99 YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRR 140
L +G+ + + +L+ L+ +
Sbjct: 81 PKL-FGLDAVVNQHEVHLSISLVKPEKMPLLDDPLNPLYRTE 121
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 28.4 bits (64), Expect = 4.4
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 18/65 (27%)
Query: 182 GRTILITTHYIDEAKKSHMIGLMRKGI-----------LLEESPPKVLLEKYNMKSLEDV 230
GR + T + + + + +R+ + L+EES +K N+KS ++
Sbjct: 550 GRKE-VQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEES------DKLNVKSAVEM 602
Query: 231 FLLLS 235
+ LS
Sbjct: 603 YEYLS 607
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.3 bits (60), Expect = 4.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 38 IYSLLGASGCGKTTLLS 54
++ ++G GKTTL+
Sbjct: 6 VWQVVGYKHSGKTTLME 22
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 27.6 bits (61), Expect = 4.8
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 41 LLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSKKQLGFM-------PQQISLYP 88
L+G GK+++ + + N + F+ P Q+ +
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD 84
Query: 89 EFTIDEMICY--YGLIYGM-SLQQIKEKAEYLQALLHLNH 125
EMI LIY + + E L + +
Sbjct: 85 PTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY 124
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 28.2 bits (63), Expect = 4.9
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 41 LLGASGCGKTTLLSCI 56
L G G GKT + +
Sbjct: 243 LYGPPGTGKTLIARAV 258
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 27.8 bits (62), Expect = 4.9
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58
L + + S I G + GKTT L+ I
Sbjct: 254 WLAIEHKFSAIVV--GETASGKTTTLNAIMM 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 27.4 bits (61), Expect = 5.4
Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 58/180 (32%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
L G G GKT + G +Y ++E
Sbjct: 28 LSGGPGTGKTIFSQQFLWNGLKMGEPG------------------IY--VALEE------ 61
Query: 101 LIYGMSLQQIKEKAEYL---------QALLHLNHFKRKCGSLSGGQQRRVSLAITLL--- 148
Q+++ + + + S ++ + +T +
Sbjct: 62 -----HPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREF 116
Query: 149 ----------HDPELLILDEPTSGI---DPVIAEEIWNHLL-YLAESGRTILITTHYIDE 194
+ + +++D + + P +A I L LA +G T + +
Sbjct: 117 IEVLRQAIRDINAKRVVVD-SVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.3 bits (61), Expect = 5.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 41 LLGASGCGKTTLLSCI 56
L G+ G GKT LL+ I
Sbjct: 59 LHGSFGVGKTYLLAAI 74
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 27.2 bits (60), Expect = 5.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 35 KSTIYSLLGASGCGKTTL 52
+S I + G G GKT
Sbjct: 4 RSPIIWINGPFGVGKTHT 21
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 27.1 bits (61), Expect = 6.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSI 71
SG GKT+L+ + I +SI
Sbjct: 14 APSGAGKTSLVRALVKAL----AEIKISI 38
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.5 bits (60), Expect = 6.4
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 32 TVQKSTIYSLL--GASGCGKTTLLSCITGQNVLN 63
+V+K ++L+ G SG GK+TL++ + ++
Sbjct: 12 SVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYP 45
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics,
isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP:
c.87.1.3 PDB: 1f6d_A*
Length = 384
Score = 27.5 bits (62), Expect = 6.4
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 164 DPVIAEEIWNHLLYLAESGRTILITTH 190
+ E+ + ++ + IL+T H
Sbjct: 187 SDKLRSELAANYPFIDPDKKMILVTGH 213
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 27.0 bits (60), Expect = 6.6
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 22/111 (19%)
Query: 41 LLGASGCGKTTLLSCITGQNVLN-----GGNI-HLSITSKKQLGF----MPQQISLYPEF 90
+G GKT L + + + + + + +P SL +
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQL 71
Query: 91 TIDEMICYY----GLIY----GMSLQQIKEKAEYLQALLHLNHFKRKCGSL 133
+ + +++ +++K+ AE+L +L + + SL
Sbjct: 72 ----LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL 118
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET:
DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11
e.13.1.2
Length = 503
Score = 27.4 bits (60), Expect = 6.7
Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 26/127 (20%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-------------------- 65
++ + + + + SG +T + Q G
Sbjct: 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLI 291
Query: 66 ------NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ S + K+++ + + E ++ Y ++ K Y+++
Sbjct: 292 GLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS 351
Query: 120 LLHLNHF 126
L +
Sbjct: 352 GLGCDVI 358
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 27.1 bits (60), Expect = 7.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 41 LLGASGCGKTTLLSCI 56
L G G GK+ LL+ +
Sbjct: 157 LYGDMGIGKSYLLAAM 172
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 27.5 bits (60), Expect = 7.8
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 11/143 (7%)
Query: 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71
E A + + K+ L K + + LLGA GK+T++ +H++
Sbjct: 16 EKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK--------QMRILHVNG 67
Query: 72 TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG 131
+ + PQ + E I + I+ + L+
Sbjct: 68 FNGEGGEEDPQAAR---SNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPEN 124
Query: 132 SLSGGQQRRVSLAITLLHDPELL 154
V PE
Sbjct: 125 QFRVDYILSVMNVPDFDFPPEFY 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 26.7 bits (60), Expect = 7.8
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSI 71
G SG GK T+ + + SI
Sbjct: 15 GPSGVGKGTVREAVFKDPE---TSFDYSI 40
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 26.5 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 38 IYSLLGASGCGKTTLLSCI 56
I S++G S GKTTL++ +
Sbjct: 4 ILSIVGTSDSGKTTLITRM 22
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 27.2 bits (61), Expect = 7.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 41 LLGASGCGKTTLLSCIT 57
+ SG GK+TLL I
Sbjct: 76 IFAGSGVGKSTLLGMIC 92
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 27.3 bits (61), Expect = 8.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 41 LLGASGCGKTTLLSCIT 57
L SG GK+ LL +
Sbjct: 162 LFAGSGVGKSVLLGMMA 178
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 27.3 bits (60), Expect = 8.3
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLL 53
+ VE+ S + Q + L +G GK+T +
Sbjct: 205 VPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKV 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 26.7 bits (60), Expect = 8.4
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSI 71
G SG GK TL+ + + SI
Sbjct: 19 GPSGVGKGTLIKKVLSE---FPSRFRFSI 44
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination,
branch migration, DNA BIND oligomerization, acidic PIN;
2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A
2h5x_A 1bvs_A
Length = 212
Score = 26.8 bits (60), Expect = 8.5
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLE 220
MI +R G +LE + V++E
Sbjct: 10 MGRGSEFMIASVR-GEVLEVALDHVVIE 36
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 26.8 bits (60), Expect = 8.6
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSI 71
G S GK+T++ C+ + N+H S+
Sbjct: 27 GPSAVGKSTVVRCLRERI----PNLHFSV 51
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 8.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 41 LLGASGCGKTTLLS 54
LLGA G G+ + +
Sbjct: 10 LLGAHGVGRRHIKN 23
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.0 bits (59), Expect = 9.7
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72
+ G +G GK++ ++ + G G +
Sbjct: 74 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.423
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,916,215
Number of extensions: 291087
Number of successful extensions: 1075
Number of sequences better than 10.0: 1
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 166
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.2 bits)