RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy106
(321 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 174 bits (443), Expect = 6e-54
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+++EN KR + ++KL +T++ LLG SGCGKTT L I G G I
Sbjct: 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 68 HLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ L + Q +++P T+ E I + I +I ++ + L
Sbjct: 64 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 123
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + R LSGGQ++RV++A ++ +P++L++DEP S +D + + + L
Sbjct: 124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 180 -ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
+ T + TH EA I +M +G LL+ P + +
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 174 bits (441), Expect = 1e-53
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 12/235 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ V++ KR K +L + +++ I+ L+G +G GKTT L I+ + G +
Sbjct: 2 AVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Query: 68 --------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+K + ++P++ Y E + + Y S +I+E E
Sbjct: 60 TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 119
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ L K + + S G R++ +A L+ +P L ILDEPTSG+D + A E+ L
Sbjct: 120 IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 179
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
++ G TIL+++H + E + I L+ G ++E + L E+Y +++E+VF
Sbjct: 180 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 234
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 158 bits (401), Expect = 1e-47
Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 28/239 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ V + +KR+ VL + + + + S++G+SG GK+T L CI + G I
Sbjct: 3 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 69 L---SITS-------------------KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGM 105
+ +I + +L + Q +L+ T+ E + + + G+
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 106 SLQQIKEKAEYLQALLHLNHF--KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163
S +E+A A + ++ + LSGGQQ+RVS+A L +P++L+ DEPTS +
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
DP + E+ + LAE G+T+++ TH + A+ S + + +G + EE P+ +
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 156 bits (395), Expect = 6e-47
Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 9 IRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC----------- 55
I+++N K + ++ Y L + + +++ S++G SG GK+T+L+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 56 --ITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY---GMSLQQI 110
I + + L+ + ++GF+ QQ +L P T E + + MS ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 111 KEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+++A + L K LSGGQQ+RV++A L ++P +++ D+PT +D
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 169 EEIWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPK 216
E+I L L E G+T+++ TH I+ A+ I ++ G + E +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 154 bits (390), Expect = 1e-45
Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 14/232 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS----GRVSFCSQFS 106
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-----KRKCGSLSGGQQR 139
+ P TI E I + + + + + Q + +LSGGQ+
Sbjct: 107 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199
R+SLA + D +L +LD P +D E+++ + + +T ++ T ++ +K+
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 200 MIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIEQRRKSFL 251
I ++ +G L + L+ E+RR S L
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRP----DFSSKLMGYDTFDQFTEERRSSIL 273
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 150 bits (380), Expect = 1e-44
Identities = 52/236 (22%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG---------- 58
+ V++ + + + + + + V + I +L+GA+G GKTT LS I G
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 59 QNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
N + N + ++ + +P+ ++PE T+ E + ++
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 119 ALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
L K+ G+LSGG+Q+ +++ L+ P+LL++DEP+ G+ P++ E++ +
Sbjct: 125 LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184
Query: 178 LAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+ + G TIL+ A K +H ++ G ++ E LL+ + + +L
Sbjct: 185 INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN---EMVRKAYL 237
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 150 bits (380), Expect = 1e-44
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 17/230 (7%)
Query: 9 IRVENAYKRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I++ N K + L+ + + V IY ++GASG GK+TL+ C+ G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 67 IHL---SITS---------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
+ + +T+ ++Q+G + Q +L T+ + + ++K +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L +L+ L +LSGGQ++RV++A L +P++L+ DE TS +DP I
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 174 HLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L + G TIL+ TH +D K+ + ++ G L+E+ +
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 150 bits (379), Expect = 2e-44
Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 18/230 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNV 61
+R+ + +K + ++ + V+ LLG SGCGKTT L I G +
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 62 LNGGNIHLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
G + + + Q +LYP T+ + I + + + Q+I ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 115 EYLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+ LL L + LSGGQ++RV+L ++ P++ ++DEP S +D + +
Sbjct: 121 REVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 174 HLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L L G T + TH EA I +M +G+L + P + +K
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 145 bits (367), Expect = 2e-42
Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 28/250 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+R EN K LD + ++V K + ++G +G GK+TL++ ITG + G ++
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 69 L----------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL----------- 107
+ + Q E T+ E + + G S
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 108 --QQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+++ EKA + L L+H RK G LSGGQ + V + L+ +P+++++DEP +G+
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK-Y 222
P +A +I+NH+L L G T LI H +D + +M G ++ E + ++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL 242
Query: 223 NMKSLEDVFL 232
+ + ++++
Sbjct: 243 SDPKVVEIYI 252
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 144 bits (364), Expect = 2e-42
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 12/223 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
++++N K + V + + + + +G SGCGK+TLL I G + G++
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 69 LSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
+ G + Q +LYP ++ E + + + G + I ++ + +L
Sbjct: 59 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118
Query: 122 HLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
L H RK +LSGGQ++RV++ TL+ +P + +LDEP S +D + ++ + L
Sbjct: 119 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
GRT++ TH EA + I ++ G + + P L
Sbjct: 179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 141 bits (357), Expect = 6e-41
Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 19/229 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I +++ +++ +L + ++++K + +G SG GK+TL++ I + G I
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 68 -------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
S + + QQ ++ T+ E I G + +++ E A+ A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-GRPT-ATDEEVVEAAKMANAH 134
Query: 121 LHLNHFK--------RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
+ + + LSGGQ++R+S+A L++P +LILDE TS +D I
Sbjct: 135 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 173 NHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L L++ RT LI H + + I ++ G ++E + L+ K
Sbjct: 195 EALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 140 bits (355), Expect = 8e-41
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 20/231 (8%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNV 61
+ N + + L + + + +L+G SG GK+T+ S IT ++
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 62 LNGGNIHLSITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
L G+ T Q+ + Q + L+ + + + Y S +QI+E A
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA--YARTEEYSREQIEEAARMAY 130
Query: 119 ALLHLNHF--------KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
A+ +N LSGGQ++R+++A LL D +LILDE TS +D
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I L L + RT L+ H + +++ I ++ GI++E LL +
Sbjct: 191 IQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 132 bits (334), Expect = 3e-38
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ + + + VL+++ MT++K + + G +G GKTTLL I+ G I
Sbjct: 3 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 69 L----SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN 124
K ++ F+P++I + + ++++ + +YG+ + K + + +
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVL 117
Query: 125 HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGR 183
K+K G LS G RRV LA TLL + E+ +LD+P ID ++ +L L E G
Sbjct: 118 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177
Query: 184 TILITTHYIDEA 195
I+ + +
Sbjct: 178 VIISSREELSYC 189
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 131 bits (331), Expect = 2e-37
Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 15/229 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V+N K LD + + ++ + +LG SG GKTT + I G +V + G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 68 HLSITS------------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
+ +++G + Q +LYP T E I + MS ++I+++ E
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ +L ++H LSG QQ+RV+LA L+ DP LL+LDEP S +D + +
Sbjct: 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 175 LLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
+ + G T+L+ +H + + +G++ KG L++ P+ L +
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 129 bits (326), Expect = 9e-37
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 22/221 (9%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------GQNVLNGGNIHLSITSK--K 75
L L V+ I L+G +G GK+TLL+ + G G + +K
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLAL 72
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
++ QQ + + + + E + L L+ R LS
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 127
Query: 135 GGQQRRVSLAITLLH-------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
GG+ +RV LA +L +LL+LDEP + +D + L L + G I++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSL 227
++H ++ + +H L++ G +L + +L N+
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 228
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 129 bits (326), Expect = 1e-36
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 17/228 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I N R+ P +LD + +++++ + ++G SG GK+TL I + G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 69 L---SITSK------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + +Q+G + Q L +I + I + K
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 120 LLHL------NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+ + LSGGQ++R+++A L+++P++LI DE TS +D I
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 174 HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ + + GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 181 NMHKICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 127 bits (321), Expect = 4e-36
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 16/223 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNVL 62
I +E+ ++ + + LD L + V+ + +LG +G GKT L I G +L
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 63 NGGNIHLSITSKKQ-LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
G ++ +K + F+ Q SL+P + + + + + + + ++ L
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDPKRVLDTARDL 115
Query: 122 HLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
+ H R +LSGG+Q+RV+LA L+ +P++L+LDEP S +DP E L L
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
++ T+L TH EA+ + I ++ G L++ P+ + EK
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 127 bits (320), Expect = 8e-36
Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ + + +L + Q ++I + G SG GK+T+ S + G I
Sbjct: 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 69 L---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ I + + Q+GF+ Q ++ + + YGL + + + + + A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT--YGLEGDYTDEDLWQVLDLAFA 118
Query: 120 LLHLNHFKRKC--------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ + + +SGGQ++R+++A L +P++L+LDE T+ +D +
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L L + GRT L+ H + + I + KG + L+
Sbjct: 179 QKALDSLMK-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 124 bits (312), Expect = 2e-34
Identities = 51/233 (21%), Positives = 106/233 (45%), Gaps = 21/233 (9%)
Query: 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
++ ++ + ++ VL L T++ + +L+G +G GK+T+ + + GG
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 67 IHL---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
+ L + +Q+ + Q+ ++ ++ E I Y GL ++++I A
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAY-GLTQKPTMEEITAAAVKS 128
Query: 118 QALLHLNHFKRKCG--------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
A ++ + LSGGQ++ V+LA L+ P +LILD+ TS +D
Sbjct: 129 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 170 EIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ L E R++L+ T ++ +++ I + G + E + L+EK
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 241
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 113 bits (283), Expect = 2e-30
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 38 IYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEF 90
LLG +G GK+ L I G+ LNG +I ++ +GF+PQ +L+P
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
++ I Y + + + + + L + H RK LSGG+++RV+LA L+
Sbjct: 86 SVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKG 207
P LL+LDEP S +D + L ++ IL TH + EA + + +M G
Sbjct: 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203
Query: 208 ILLEESPPKVLLEKYN 223
++E+ K L N
Sbjct: 204 RIVEKGKLKELFSAKN 219
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 61.5 bits (148), Expect = 5e-12
Identities = 21/174 (12%), Positives = 40/174 (22%), Gaps = 16/174 (9%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G G GKTTL+ I + + F I
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWT-------EEVRDPETKKRTGFRIITTEGKKK 57
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
+ K Y + + +++I+DE
Sbjct: 58 IFSSKFFTSKKLVGSY--------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214
+ + ++ T D I + +L+E +P
Sbjct: 110 KMELFSKKFRDLVRQIM-HDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 54.4 bits (129), Expect = 4e-09
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
F ++ G R+++++ L + LLILDEPT +D ++ + +
Sbjct: 197 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 256
Query: 182 GRTILITTHYIDEAKKS-HMIGLMRKG 207
+++ +H + + H+I + +
Sbjct: 257 IPQVILVSHDEELKDAADHVIRISLEN 283
Score = 29.7 bits (65), Expect = 0.37
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 38 IYSLLGASGCGKTTLLSCITG 58
I ++G +G GK++LL I
Sbjct: 25 INLIIGQNGSGKSSLLDAILV 45
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 53.7 bits (127), Expect = 9e-09
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 122 HLNHFKRKCGSLSGGQQRRVS------LAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+R LSGG++ + +++ L + LLILDEPT +D ++ +
Sbjct: 268 VWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 327
Query: 176 LYLAESGRTILITTHYIDEAKKS-HMIGLMRKG 207
+ +++ +H + + H+I + +
Sbjct: 328 ERYLKKIPQVILVSHDEELKDAADHVIRISLEN 360
Score = 26.0 bits (55), Expect = 7.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G +G GK++LL I
Sbjct: 28 IIGQNGSGKSSLLDAIL 44
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 39.3 bits (90), Expect = 4e-04
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 86 LYPEFTIDEM--ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKC--GSLSGGQQRRV 141
+Y E T + + G ++++ E KR LSGG++
Sbjct: 282 IYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVA 341
Query: 142 SLAITL----LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+LA+ +LDE + +D + I ++ ++ +
Sbjct: 342 ALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 394
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 35.7 bits (81), Expect = 0.002
Identities = 12/84 (14%), Positives = 32/84 (38%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
++G GK+TLL+ + ++ +I + + + I T
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 63
Query: 100 GLIYGMSLQQIKEKAEYLQALLHL 123
L+ + +++ ++ E +L +
Sbjct: 64 DLVERLGIERTLQEIEKADIVLFV 87
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 35.4 bits (80), Expect = 0.004
Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 26/166 (15%)
Query: 36 STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEM 95
+TI G S GK+TL+ +TG+ V P T +
Sbjct: 1 ATI-IFAGRSNVGKSTLIYRLTGKKVR---------------------RGKRPGVTRKII 38
Query: 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155
+ + + + + + + V++ + +I
Sbjct: 39 EIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 98
Query: 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201
G P +L E ++ + +D+ K +
Sbjct: 99 KRWEKRGEIP----IDVEFYQFLRELDIPTIVAVNKLDKIKNVQEV 140
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 35.2 bits (80), Expect = 0.007
Identities = 38/252 (15%), Positives = 78/252 (30%), Gaps = 23/252 (9%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL- 69
VE+ + RH + +LD + + + G G GK+T L + G + +
Sbjct: 29 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 88
Query: 70 --SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+S G + + + E + L ++A L L +
Sbjct: 89 AVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYD 148
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
++ + ++D S +++ L E I+I
Sbjct: 149 V---------VIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVI 199
Query: 188 T---THYIDEAKKSHMIGLMRKGIL---LEESPPKVL----LEKYNMKSLEDVFL-LLSS 236
+ + IL +E P+VL LEK + + + ++
Sbjct: 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 259
Query: 237 KQQHDRIEQRRK 248
R++Q R+
Sbjct: 260 LTASGRLQQVRQ 271
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 33.1 bits (74), Expect = 0.029
Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 41 LLGASGCGKTTLLSCITGQNV------------LNGGNIHLSITSKKQLGFMPQQISLYP 88
+ G GKT+LL+ +T +V + +++ + ++S Y
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYL 67
Query: 89 EFTIDEMICYYGLIYGMSLQQ-IKEKAEYLQALLHLNHFKRKC 130
+ + ++ + + AE+L +L + +
Sbjct: 68 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 110
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 33.3 bits (75), Expect = 0.030
Identities = 11/119 (9%), Positives = 33/119 (27%), Gaps = 4/119 (3%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70
E+ H + + ++D + ++ + G G GK+T + + G + +
Sbjct: 26 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 85
Query: 71 I----TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
+++ + + + G + E +
Sbjct: 86 AVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGF 144
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 32.8 bits (74), Expect = 0.050
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI 56
AI + N ++R + + L V I ++G +G GKT + +
Sbjct: 27 AIALRNRWRRM-----QLQEPLRHEVTPKNIL-MIGPTGVGKTEIARRL 69
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 31.5 bits (70), Expect = 0.098
Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 30/240 (12%)
Query: 41 LLGASGCGKTTLLSCITGQ-----NVLNGGNIHLSITSKKQLGFMP---------QQISL 86
L G G GKT+L S I + V++ + +L + +
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNR 96
Query: 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAIT 146
E I + + + + +L ++ K ++ + L
Sbjct: 97 MTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMA-VPKINSYLGTI 155
Query: 147 LLHDPELLILDEPTSGIDPVIAEEIWN----HLLYLAESGRTILITTHYIDEAKKSHMIG 202
++ + + +L L ++G I +
Sbjct: 156 ERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDI--RLYNREGVKLYSS 213
Query: 203 LMRKGILLEESPPKVLLEKYNMKSLEDVF------LLLSSKQ---QHDRIEQRRKSFLWP 253
L I +E+ K L K + K ++ ++L+ Q + I+Q+ +S P
Sbjct: 214 LETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESLQPP 273
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.9 bits (68), Expect = 0.11
Identities = 11/91 (12%), Positives = 23/91 (25%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
++G GK+TL + + + + Q + T
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 100 GLIYGMSLQQIKEKAEYLQALLHLNHFKRKC 130
+I + +L + KR
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGI 94
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.8 bits (68), Expect = 0.12
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
+LG GKTT+L G++V
Sbjct: 7 MLGLDNAGKTTILKKFNGEDV 27
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.8 bits (68), Expect = 0.12
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL 62
+++G GK+TLL+ + GQ +
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKIS 31
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.9 bits (68), Expect = 0.12
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 34 QKSTIYSLLGASGCGKTTLLSCITGQNV 61
S +++G GK+TLL+ + G V
Sbjct: 3 TYSGFVAIVGKPNVGKSTLLNNLLGVKV 30
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.9 bits (69), Expect = 0.15
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 20 SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+KL +L L S ++G G GK++ ++ I G+ V++
Sbjct: 16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF 63
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 30.4 bits (67), Expect = 0.17
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 40 SLLGASGCGKTTLLSCITGQNV 61
L+G GK++LL+ +T +
Sbjct: 5 GLVGYPNAGKSSLLAAMTRAHP 26
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 30.3 bits (67), Expect = 0.20
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
L+G GK+TLLS ++ I F +L T D
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAKP--------KIADYH---FTTLVPNLGMVETDDGRSFVM 53
Query: 100 GLIYGMSLQQIKEKAEYLQALLHLNH 125
+ G+ + Q L H+
Sbjct: 54 ADLPGLIEGAHQGVGLGHQFLRHIER 79
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.0 bits (66), Expect = 0.23
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
LG GKTTLL + +
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRL 25
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.7 bits (65), Expect = 0.24
Identities = 9/59 (15%), Positives = 20/59 (33%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY 98
+ G GK++LL+ + G+ +I + + + L+ T
Sbjct: 5 VIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.6 bits (65), Expect = 0.30
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 38 IYSLLGASGCGKTTLLSCI------TGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT 91
+ + SG GKTTLL + G + H + K + T
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
I + L+ ++ + +
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLASRMDT 94
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.0 bits (66), Expect = 0.32
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
+G GKT L +
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQY 25
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 29.6 bits (65), Expect = 0.34
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 32 TVQKSTIYSLLGASGCGKTTL 52
T IY L+G SG GK+ +
Sbjct: 2 TNHDHHIYVLMGVSGSGKSAV 22
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 29.6 bits (65), Expect = 0.39
Identities = 25/213 (11%), Positives = 56/213 (26%), Gaps = 21/213 (9%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
L G +G GK+T ++ L L + + G + +CY
Sbjct: 29 LSGGNGAGKSTTMAAF--VTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSM 86
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
L S Q ++ ++ G + ++ + ++ E
Sbjct: 87 LDTINSRHQR---------VVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETL 137
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
+ + A G D +G++ + + +
Sbjct: 138 NERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSAS-------D 190
Query: 221 KYNMKSLEDVFLLLSSKQQHDRIEQRRKSFLWP 253
+ L + L I + + +L P
Sbjct: 191 RSKFYRLIEASL---YGGISSAITRSLRDYLLP 220
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 29.3 bits (64), Expect = 0.46
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
+LG G GKTT+L + V
Sbjct: 10 ILGLDGAGKTTILYRLQVGEV 30
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.9 bits (63), Expect = 0.60
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
++G GKTT+L + +
Sbjct: 5 MVGLDAAGKTTILYKLKLGEI 25
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.8 bits (63), Expect = 0.62
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60
+L KL + LLG GKTTLL + ++
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED 40
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.0 bits (64), Expect = 0.67
Identities = 13/116 (11%), Positives = 33/116 (28%), Gaps = 16/116 (13%)
Query: 41 LLGASGCGKTTLLSCI--------TGQNV--LNGGNIHLSITSKKQLGFMPQQISLYPEF 90
LLGA GK+T++ + +G ++ + ++
Sbjct: 11 LLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFND 70
Query: 91 TIDEMICYYGLIYGM------SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRR 140
+ Y M +++E +++ + + L +Q
Sbjct: 71 VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 126
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.5 bits (62), Expect = 0.81
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 40 SLLGASGCGKTTLLSCITGQNV 61
+++G GK+TL + I +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKER 33
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 0.84
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 41 LLGASGCGKTTLLSCITG 58
LLGA G GK+ L G
Sbjct: 6 LLGAPGVGKSALARIFGG 23
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.1 bits (61), Expect = 0.96
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
LG GKTTLL + +
Sbjct: 18 FLGLDNAGKTTLLHMLKDDRL 38
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 28.6 bits (63), Expect = 1.1
Identities = 29/248 (11%), Positives = 73/248 (29%), Gaps = 40/248 (16%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G +G GK++ ++ + G G + + + Y I ++ +
Sbjct: 61 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE------VTMERHPYKHPNIPNVVFWDL 114
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
G + E ++ + ++ AI+++ + +
Sbjct: 115 PGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK-KNDIDIAKAISMMKKEFYFVRTK-- 171
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL- 219
+D I E + + + + + + GI + P + L
Sbjct: 172 --VDSDITNEADGEPQTFDK--------EKVLQDIRLNCVNTFRENGI----AEPPIFLL 217
Query: 220 -----EKYNMKSLEDVF-----------LLLSSKQQHDRIEQRRKSFLWPIQAIQEHTRY 263
Y+ L D ++S D + ++++ FL ++
Sbjct: 218 SNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAAD 277
Query: 264 LANFLPLT 271
L N +P
Sbjct: 278 LVNIIPSL 285
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.5 bits (62), Expect = 1.1
Identities = 23/217 (10%), Positives = 55/217 (25%), Gaps = 14/217 (6%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
++ I G GKT L + L G + F+ + + P+
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKII----FIDTENTFRPDRLR 89
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
D + + + +A + + L + G + + + +
Sbjct: 90 DIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 149
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
+ +A+ + E + +T + G +
Sbjct: 150 DFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD------PGATMTFQADPK 203
Query: 213 SPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIEQRRKS 249
P + + + L + RI + S
Sbjct: 204 KPIGGHILAHAS----TTRISLRKGRGELRIAKIYDS 236
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.9 bits (61), Expect = 1.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 38 IYSLLGASGCGKTTLLSCI 56
++ ++G GKTTL+
Sbjct: 3 VWQVVGYKHSGKTTLMEKW 21
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 27.7 bits (60), Expect = 1.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
+LG SG GKT+L++ +
Sbjct: 7 ILGDSGVGKTSLMNQYVNK 25
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.6 bits (60), Expect = 1.4
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 35 KSTIYS--LLGASGCGKTTLLSCIT 57
KS+++ LLG G GK++L++
Sbjct: 3 KSSLFKVILLGDGGVGKSSLMNRYV 27
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 1.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
L+G GKTT ++ I
Sbjct: 7 LVGLQYSGKTTFVNVIASGQF 27
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 1.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 41 LLGASGCGKTTLLSCITGQN 60
L+G G GK+TL + G +
Sbjct: 8 LIGEQGVGKSTLANIFAGVH 27
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.9 bits (61), Expect = 1.4
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
T+Y + SG GK++L+ + L + +S T+++
Sbjct: 3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 42
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 1.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
++G SG GK++LL T
Sbjct: 12 IIGESGVGKSSLLLRFTDD 30
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.6 bits (60), Expect = 1.6
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
++GA G GK+ L + + ++ + + + +KQ+ + L T +
Sbjct: 8 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA 66
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 1.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G CGKT LL +
Sbjct: 7 IVGDGACGKTCLLIVNS 23
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.7 bits (60), Expect = 1.7
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 5/172 (2%)
Query: 20 SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGF 79
+ P LD + + T+ +L+ G GK+ L + Q + + + +
Sbjct: 13 AAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIY 72
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQR 139
+P + P I + G +Q +Q L+ G ++
Sbjct: 73 LPAE---DPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRA 129
Query: 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
L+ L +A+ I A++G +I+ H
Sbjct: 130 AEG--RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.5 bits (60), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
L+G +G GKT L+ T
Sbjct: 10 LIGNAGVGKTCLVRRFTQGLF 30
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.4 bits (59), Expect = 1.7
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
+LG GK++L ++ + + T K + Q+ L T +
Sbjct: 9 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI 67
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.3 bits (59), Expect = 1.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
+LG SG GKT+L+
Sbjct: 7 ILGDSGVGKTSLMHRYVND 25
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 27.3 bits (59), Expect = 1.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 41 LLGASGCGKTTLLSCITGQN 60
++G GKTT+L +
Sbjct: 20 IVGLDNAGKTTILYQFSMNE 39
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.2 bits (59), Expect = 1.9
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
++G +G GK+ LL +
Sbjct: 10 VIGNAGTGKSCLLHQFIEK 28
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 1.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G G GK+ L
Sbjct: 11 VVGGGGVGKSALTIQFI 27
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (59), Expect = 2.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 41 LLGASGCGKTTLLSCITG 58
L+G SG GK+ LL
Sbjct: 7 LIGDSGVGKSCLLVRFVE 24
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.3 bits (59), Expect = 2.0
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G +G GK+ L+ + + + L T + Q + +S+ T +
Sbjct: 7 IFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQR 66
Query: 101 LIY 103
+
Sbjct: 67 EGH 69
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 26.3 bits (57), Expect = 2.0
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Query: 65 GNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN 124
N+ + + Q L + + + Q + + L +
Sbjct: 14 RNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFA--QFMTQEAAQKCLAAAS 71
Query: 125 HFKRKCGSLSGGQQRRVSLAIT 146
G G+Q +V LA+T
Sbjct: 72 LEAEGGGLKLDGRQLKVDLAVT 93
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.2 bits (59), Expect = 2.0
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
LG GKT+L++
Sbjct: 5 FLGEQSVGKTSLITRFMYD 23
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.1 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
L+G SG GK+ LLS T
Sbjct: 9 LIGDSGVGKSNLLSRFTRN 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.3 bits (59), Expect = 2.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G S CGKT LL
Sbjct: 7 VVGDSQCGKTALLHVFA 23
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.4 bits (60), Expect = 2.1
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86
K I ++ G SG GK++LL+ I L + + + Q +
Sbjct: 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF 145
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.9 bits (58), Expect = 2.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G G GK+ L
Sbjct: 9 VVGDGGVGKSALTIQFF 25
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.1 bits (59), Expect = 2.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 41 LLGASGCGKTTLLSCITG 58
L+G SG GK+ LL +
Sbjct: 11 LIGNSGVGKSCLLLRFSD 28
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.0 bits (58), Expect = 2.5
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 41 LLGASGCGKTTLLSCITG 58
++G GK++++
Sbjct: 7 VVGNGAVGKSSMIQRYCK 24
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.2 bits (59), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
LG SG GKTT L T
Sbjct: 10 ALGDSGVGKTTFLYRYTDN 28
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 2.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 41 LLGASGCGKTTLLSCITG 58
+ GA G GK++L+
Sbjct: 7 VFGAGGVGKSSLVLRFVK 24
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.9 bits (58), Expect = 2.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G GKT LL T
Sbjct: 10 VVGDGAVGKTCLLISYT 26
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 2.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 41 LLGASGCGKTTLLSCITG 58
L+G SG GKT +L +
Sbjct: 11 LIGDSGVGKTCVLFRFSE 28
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.8 bits (58), Expect = 2.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G G GK+ LL T
Sbjct: 9 IIGDMGVGKSCLLHQFT 25
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 27.3 bits (59), Expect = 2.7
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI 56
++ + + + + SG GK+T +
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQ 55
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.8 bits (58), Expect = 2.7
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 41 LLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISL 86
++G S GKT+ L + K + ++I L
Sbjct: 10 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKL 56
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.1 bits (58), Expect = 2.7
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 40 SLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMIC 97
+ G S GK++ L+ +T Q + +++ P + E+
Sbjct: 20 AFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPE 79
Query: 98 YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKC 130
+ +L + EK + LQ L+ L +
Sbjct: 80 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL 112
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.8 bits (58), Expect = 2.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 41 LLGASGCGKTTLLSCITGQ 59
++G +G GK+ LL T +
Sbjct: 8 IIGDTGVGKSCLLLQFTDK 26
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.8 bits (58), Expect = 2.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 41 LLGASGCGKTTLLSCIT 57
L+G SG GKT LL
Sbjct: 11 LVGDSGVGKTCLLVRFK 27
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.5 bits (57), Expect = 2.8
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 41 LLGASGCGKTTLLSCITG 58
++G S GKT L
Sbjct: 7 VIGDSNVGKTCLTYRFCA 24
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.8 bits (58), Expect = 2.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G+ G GK+ L
Sbjct: 9 MVGSGGVGKSALTLQFM 25
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 27.1 bits (59), Expect = 3.0
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
K AI + N ++R + + L V I ++G +G GKT + +
Sbjct: 23 KRAVAIALRNRWRR-----MQLQEPLRHEVTPKNI-LMIGPTGVGKTEIARRLAKLANAP 76
Query: 64 GGNIHLS-ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111
+ + T +G I + I + + +I
Sbjct: 77 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEID 125
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 27.1 bits (59), Expect = 3.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGN 66
++G GK+T IT + N N
Sbjct: 15 IVGMPNVGKSTFFRAITKSVLGNPAN 40
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 3.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 41 LLGASGCGKTTLLSCIT 57
L+G G GKTT +
Sbjct: 8 LVGDGGTGKTTFVKRHL 24
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.5 bits (57), Expect = 3.1
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSIT-----SKKQLGFMPQQIS 85
L G G GKTTL+ + +G + T +++GF +S
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLS 55
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.5 bits (57), Expect = 3.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 41 LLGASGCGKTTLLSCIT 57
LLG +G GK++++
Sbjct: 9 LLGDTGVGKSSIMWRFV 25
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.5 bits (57), Expect = 3.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G GKT LL
Sbjct: 14 VVGDGAVGKTCLLMSYA 30
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.4 bits (57), Expect = 3.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 41 LLGASGCGKTTLLSCITG 58
LLG GKT+L+
Sbjct: 8 LLGEGCVGKTSLVLRYCE 25
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 3.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 41 LLGASGCGKTTLLSCITGQNV 61
LLG GK+T + + +
Sbjct: 7 LLGTGESGKSTFIKQMRIIHG 27
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 26.6 bits (57), Expect = 3.5
Identities = 7/59 (11%), Positives = 17/59 (28%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
L G S GK++ ++ + + L + T + ++
Sbjct: 28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSK 86
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.4 bits (57), Expect = 3.5
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 41 LLGASGCGKTTLLSCITG 58
+LG+ G GK+ L
Sbjct: 8 VLGSGGVGKSALTVQFVT 25
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.5 bits (57), Expect = 3.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G GKT LL T
Sbjct: 8 VVGDGAVGKTCLLISYT 24
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 3.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 41 LLGASGCGKTTLLSCIT 57
++G G GK+ L
Sbjct: 10 VVGGGGVGKSALTIQFI 26
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.6 bits (57), Expect = 3.6
Identities = 15/91 (16%), Positives = 26/91 (28%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMIC 97
IY +G G GKTTL + L++ F + + +
Sbjct: 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGY 107
Query: 98 YYGLIYGMSLQQIKEKAEYLQALLHLNHFKR 128
+ +L +K + L H
Sbjct: 108 PIQVRGAPALDILKALVDNLYVENHYLLVIL 138
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 3.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 41 LLGASGCGKTTLLSCIT 57
LLG S GK++L+
Sbjct: 11 LLGESAVGKSSLVLRFV 27
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 3.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 41 LLGASGCGKTTLL 53
LLGA GK+T++
Sbjct: 7 LLGAGESGKSTIV 19
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.5 bits (57), Expect = 3.8
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 14/140 (10%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI---DE 94
I +G +G GKTTL L + + +P + S+ + +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRY--LEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEI 59
Query: 95 MICYYGLIYG--MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQ-------RRVSLAI 145
M YG S ++ EK + + + Q +
Sbjct: 60 MREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM 119
Query: 146 TLLHDPELLILDEPTSGIDP 165
L P ++ + +P P
Sbjct: 120 ENLPYPLVVYISDPEILKKP 139
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.1 bits (56), Expect = 3.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 41 LLGASGCGKTTLLSCIT 57
+LG+ G GK+ L
Sbjct: 8 VLGSGGVGKSALTVQFV 24
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.2 bits (56), Expect = 4.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 41 LLGASGCGKTTLLSCITG 58
LLG + GK++++
Sbjct: 8 LLGEAAVGKSSIVLRFVS 25
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 26.4 bits (57), Expect = 4.3
Identities = 15/119 (12%), Positives = 28/119 (23%), Gaps = 4/119 (3%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
L G GKT L + I ++ I Q +
Sbjct: 45 LEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCV 104
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159
++ + + L L ++ + + T D +L E
Sbjct: 105 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD----VLQEM 159
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.1 bits (56), Expect = 4.4
Identities = 7/59 (11%), Positives = 15/59 (25%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
+LG GKTT+L + + + + + +
Sbjct: 17 MLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 75
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.1 bits (56), Expect = 5.0
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMIC 97
I + G G GK+T+L+ + G N + L + + ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 98 YYGLIYGMSL-QQIKEKAE 115
+ + I E+A
Sbjct: 63 EKQKKLQIDAAKGIAEEAR 81
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.1 bits (56), Expect = 5.2
Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 10/167 (5%)
Query: 43 GASGCGKTTL---LSCITGQNVLNGGNIHLSITSK----KQLGFMPQQISLYPEFTIDEM 95
G + GK+++ + + GQN ++ + I S+ + L + +L +F D
Sbjct: 9 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHP 68
Query: 96 I-CYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL 154
LI + + K + ++H +++ + I + E+
Sbjct: 69 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVR 128
Query: 155 ILDEPTSGIDPVI-AEEIWNHLLYLAESGRTIL-ITTHYIDEAKKSH 199
L + +D L ++E GR + I + YI K +
Sbjct: 129 DLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAF 175
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 5.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 37 TIYSLLGASGCGKTTL 52
I L G G GK+T+
Sbjct: 5 NILLLSGHPGSGKSTI 20
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.7 bits (55), Expect = 5.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 41 LLGASGCGKTTLLSCITGQN 60
+LG G GKTT+L +
Sbjct: 22 ILGLDGAGKTTILYRLQIGE 41
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.9 bits (55), Expect = 6.1
Identities = 17/168 (10%), Positives = 38/168 (22%), Gaps = 8/168 (4%)
Query: 26 LDKLCMT-VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
LDKL ++ +I + G GKT + + L
Sbjct: 12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGK-------AMYID 64
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLA 144
+ + S H + ++ + + +
Sbjct: 65 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIV 124
Query: 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
+ + LL LA+ ++ T+ +
Sbjct: 125 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQV 172
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 25.8 bits (56), Expect = 6.2
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 11/113 (9%)
Query: 20 SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGF 79
SK L + Q T G SG GK++LL+ I+ + L I + K
Sbjct: 82 SKDQDSLADIIPHFQDKTTV-FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR 140
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQI--KEKAEYLQALLHLNHFKRKC 130
+ I D G S + E+ E + C
Sbjct: 141 HVELIHTSGGLVAD--------TPGFSSLEFTDIEEEELGYTFPDIREKSSSC 185
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 25.7 bits (55), Expect = 6.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 41 LLGASGCGKTTLL 53
L G SG GK+TLL
Sbjct: 5 LSGPSGAGKSTLL 17
>d1k3ea_ d.198.1.1 (A:) Secretion chaperone CesT {Escherichia coli
[TaxId: 562]}
Length = 146
Score = 25.7 bits (56), Expect = 6.3
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
+IYG+ + + + + +L+ N + + L LL L P
Sbjct: 50 MIYGVCGKFPTDNSNFALEILNANLW--------FAENGGPYLCYEAGAQSLLLALRFPL 101
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTIL 186
P E ++ E+ +L
Sbjct: 102 DDATPEKLENEIEVVVKSMENLYLVL 127
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.2 bits (57), Expect = 6.3
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60
P L L Q + +++G GK+ L++ + G+
Sbjct: 19 PEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 56
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.1 bits (56), Expect = 6.4
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 41 LLGASGCGKTTLLSCITGQ-----NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEM 95
L G G GKTTL I + V +G I L ++ + I +
Sbjct: 40 LFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRL 99
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 25.7 bits (55), Expect = 6.4
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 41 LLGASGCGKTTLLSCIT 57
+LG + GK++L+
Sbjct: 10 VLGDARSGKSSLIHRFL 26
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.8 bits (55), Expect = 6.4
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 26 LDKLCM-TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64
LDKL ++ I + G G GKT L + L
Sbjct: 25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP 64
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.4 bits (54), Expect = 7.3
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72
L G S GK+ ++ C+ Q+VL + +
Sbjct: 8 LNGGSSAGKSGIVRCL--QSVLPEPWLAFGVD 37
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.7 bits (55), Expect = 7.5
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 26 LDKLCMT-VQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64
D + + + G SG GKT ++
Sbjct: 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF 54
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 25.7 bits (55), Expect = 7.5
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQ----NVLNGGNIHLSITSKKQLGFMPQQISLYP 88
++KS I ++G G GK T I + ++ G + ++S G M +I
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKG 64
Query: 89 EFTIDEMICY 98
+ E +
Sbjct: 65 QLVPLETVLD 74
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 25.8 bits (55), Expect = 7.6
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 26 LDKLCM-TVQKSTIYSLLGASGCGKTTLLSCI 56
LD + ++ ++ G G GKT ++
Sbjct: 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQS 54
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.3 bits (54), Expect = 7.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 41 LLGASGCGKTTLL 53
L G S GK+T++
Sbjct: 7 LSGPSAVGKSTVV 19
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 25.7 bits (55), Expect = 7.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 41 LLGASGCGKTTLL 53
+ G SG GK+TLL
Sbjct: 6 ISGPSGTGKSTLL 18
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.6 bits (55), Expect = 8.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 41 LLGASGCGKTTLL 53
LLGA GK+T L
Sbjct: 7 LLGAGESGKSTFL 19
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI 67
+ GA+G GK+ LL + +L G +
Sbjct: 55 VNGATGTGKSVLLRELAYTGLLRGDRM 81
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.7 bits (55), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 26 LDKLCMT-VQKSTIYSLLGASGCGKTTLLSCI 56
LD++C K +I GA+G GKT L+S
Sbjct: 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRF 46
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.1 bits (53), Expect = 9.6
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 34 QKSTIYSLLGASGCGKTTL 52
+K I+ L+G G GK+T+
Sbjct: 1 EKRNIF-LVGPMGAGKSTI 18
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.0 bits (53), Expect = 9.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 38 IYSLLGASGCGKTTL 52
+Y + G +G GK+T
Sbjct: 4 LYIITGPAGVGKSTT 18
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.423
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,224,586
Number of extensions: 57707
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 157
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.2 bits)