BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1060
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7JW27|WASH1_DROME WAS protein family homolog 1 OS=Drosophila melanogaster GN=wash
PE=1 SV=1
Length = 499
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 1 MQAIRTAGGTRKAKLRCVDATP--ESDNNMIVA--PPSGDLMSDLAAKLQLRRKGISGSH 56
M AIR AGG +LR A P DN+ A +GDLM+DL KL LRRKGISGS
Sbjct: 396 MAAIRNAGGVHGGRLRSPAAAPLDVVDNSRSKAGGAVTGDLMADLHNKLMLRRKGISGSQ 455
Query: 57 NQMNENSTSSGNLMDKLLHNIPPPLAA--GSSESDHDDTDTEPDWD 100
N + +T+ LM +L IPPP+ GS SD D E W+
Sbjct: 456 NPV--EATAGNPLMQQLSRVIPPPVQPRKGSKSSDEHSEDDEDGWN 499
>sp|A4IG59|WASH1_DANRE WAS protein family homolog 1 OS=Danio rerio GN=Wash1 PE=2 SV=2
Length = 481
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDNNMI------VAPPSGDLMSDLAAKLQLRRKGISG 54
+++IR AGG KA LR V GDLMSDL KL +RRKGISG
Sbjct: 376 LESIRNAGGIGKANLRNVKERKMEKKKQKEQEQVGATVSGGDLMSDLFNKLAMRRKGISG 435
Query: 55 S----HNQMNENSTSSGNLMDKLLHNIPPPLAAGSSESDHDDTDTEPDWD 100
+E SSG ++ IPP A S +D +D DW+
Sbjct: 436 KGPAGQGDSSEAPASSGGAFARMSDVIPPLPAPQQSAADDED-----DWE 480
>sp|Q28DN4|WASH1_XENTR WAS protein family homolog 1 OS=Xenopus tropicalis GN=wash1 PE=2
SV=1
Length = 472
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDN------NMIVAPPSGDLMSDLAAKLQLRRKGISG 54
+++IR AGG KAKLR V + GDLMSDL KL +RRKGISG
Sbjct: 369 LESIRQAGGIGKAKLRNVKEKKLEKKKMKEQEQVRATGGGGDLMSDLFNKLAMRRKGISG 428
Query: 55 SHNQMNENS----TSSGNLMDKLLHNIPPPLAAGSSESDHDDTDT 95
E S T + + + +PPP A S + D +D ++
Sbjct: 429 KGPAAGEASGDGPTGAFARISDTIPPLPPPDQA-SGDGDEEDWES 472
>sp|A7Z063|WASH1_BOVIN WAS protein family homolog 1 OS=Bos taurus GN=WASH1 PE=2 SV=1
Length = 471
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDNN------MIVAPPSGDLMSDLAAKLQLRRKGISG 54
+++IR AGG KAKLR V + GDLMSDL KL +RRKGISG
Sbjct: 370 LESIRQAGGIGKAKLRSVKERKLEKKKQKEQEQVRATSQGGDLMSDLFNKLAMRRKGISG 429
>sp|Q5U4A3|WASH1_XENLA WAS protein family homolog 1 OS=Xenopus laevis GN=wash1 PE=2 SV=1
Length = 472
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDN------NMIVAPPSGDLMSDLAAKLQLRRKGISG 54
+++IR AGG KA LR V + GDLMSDL KL +RRKGISG
Sbjct: 369 LESIRQAGGIGKANLRNVKEKKLEKKKMKEQEQVGATGGGGDLMSDLFNKLAMRRKGISG 428
Query: 55 SHNQMNENS----TSSGNLMDKLLHNIPPPLAAGSSESDHDDTDT 95
E S T + + + +PPP A S + D DD ++
Sbjct: 429 KVPAAGEASGDGPTGAFARISDTIPPLPPPHQA-SGDGDEDDWES 472
>sp|Q8VDD8|WASH1_MOUSE WAS protein family homolog 1 OS=Mus musculus GN=Wash1 PE=2 SV=1
Length = 475
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDNN------MIVAPPSGDLMSDLAAKLQLRRKGISG 54
+++IR AGG KAKLR V + GDLMSDL KL +RRKGISG
Sbjct: 374 LESIRQAGGIGKAKLRSVKERKLEKKKQKEQEQVRATSQGGDLMSDLFNKLVMRRKGISG 433
>sp|Q5ZKA6|WASH1_CHICK WAS protein family homolog 1 OS=Gallus gallus GN=WASH1 PE=2 SV=1
Length = 476
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDNN------MIVAPPSGDLMSDLAAKLQLRRKGISG 54
+++IR AGG KA LR V + GDLMSDL KL LRRKGISG
Sbjct: 371 LESIRQAGGIGKANLRSVKERKLEKKKQKEQEQVRATGQGGDLMSDLFNKLVLRRKGISG 430
>sp|B2RYF7|WASH1_RAT WAS protein family homolog 1 OS=Rattus norvegicus GN=Wash1 PE=2
SV=1
Length = 475
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDNN------MIVAPPSGDLMSDLAAKLQLRRKGISG 54
+++IR AGG KAKLR V + GDLMSDL KL +RRKGISG
Sbjct: 374 LESIRQAGGIGKAKLRSVKERKLEKKKQKEQEQVRATSQGGDLMSDLFNKLVMRRKGISG 433
Query: 55 SHNQMNENSTSSGNLMDKLLHNIPPPLAAGSSESDHDDTDTE 96
S G ++ +IPP D D+ D E
Sbjct: 434 K-GPGTGTSEGPGGAFSRMSDSIPPLPPPQQPAGDEDEDDWE 474
>sp|Q9NQA3|WASH6_HUMAN WAS protein family homolog 6 OS=Homo sapiens GN=WASH6P PE=1 SV=3
Length = 447
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDNN------MIVAPPSGDLMSDLAAKLQLRRKGIS 53
+++IR AGG KAKLR + + G LMSDL KL +RRKGIS
Sbjct: 348 LESIRQAGGIGKAKLRSMKERKLEKKKQKEQEQVRATSQGGHLMSDLFNKLVMRRKGIS 406
>sp|A8MWX3|WASH4_HUMAN Putative WAS protein family homolog 4 OS=Homo sapiens GN=WASH4P
PE=5 SV=1
Length = 477
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVD------ATPESDNNMIVAPPSGDLMSDLAAKLQLRRKGIS 53
+++IR AGG KAKLR + + + G LMSDL KL +RRKGIS
Sbjct: 379 LESIRQAGGIGKAKLRSMKERKLEKQQQKEQEQVRATSQGGHLMSDLFNKLVMRRKGIS 437
>sp|A8K0Z3|WASH1_HUMAN WAS protein family homolog 1 OS=Homo sapiens GN=WASH1 PE=1 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVD------ATPESDNNMIVAPPSGDLMSDLAAKLQLRRKGIS 53
+++IR AGG KAKLR + + + G LMSDL KL +RRKGIS
Sbjct: 366 LESIRQAGGIGKAKLRSMKERKLEKQQQKEQEQVRATSQGGHLMSDLFNKLVMRRKGIS 424
>sp|O36027|WSP1_SCHPO Wiskott-Aldrich syndrome protein homolog 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=wsp1 PE=1 SV=3
Length = 574
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 1 MQAIRTAGGTRKAKLRCVDATP-----ESDNNMIVAPPSGDLMSDLAAKLQLRRKGISGS 55
M +IR +GG K R V A+P ++ N + APPS +LM LA+ L R+ ++ S
Sbjct: 504 MASIRASGGMDLLKSRKVSASPSVASTKTSNPPVEAPPSNNLMDALASALNQRKTKVAQS 563
>sp|Q6VEQ5|WASH2_HUMAN WAS protein family homolog 2 OS=Homo sapiens GN=WASH2P PE=2 SV=2
Length = 465
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVDATPESDNNMI------VAPPSGDLMSDLAAKLQLRRKGIS 53
+++IR AGG KAKLR + G LMSDL KL +RRKGIS
Sbjct: 366 LESIRQAGGIGKAKLRSMKERKLEKKKQKEQEQVRATSQGGHLMSDLFNKLVMRRKGIS 424
>sp|C4AMC7|WASH3_HUMAN Putative WAS protein family homolog 3 OS=Homo sapiens GN=WASH3P
PE=2 SV=2
Length = 463
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 1 MQAIRTAGGTRKAKLRCVD------ATPESDNNMIVAPPSGDLMSDLAAKLQLRRKGIS 53
+++IR AGG KAKLR + + + G LMSDL KL +RRKGIS
Sbjct: 364 LESIRQAGGIGKAKLRSMKERKLEKKQQKEQEQVRATSQGGHLMSDLFNKLVMRRKGIS 422
>sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 GN=S PE=3 SV=1
Length = 1352
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 58 QMNENSTSSGNLMDKLLHNIPPPLAAGSSESDHDD 92
Q N SS DKL +N+PPPL S++ D D
Sbjct: 1200 QANSRYVSSDVKFDKLENNLPPPLLENSTDVDFKD 1234
>sp|Q54UI0|Y3989_DICDI Uncharacterized transmembrane protein DDB_G0281067 OS=Dictyostelium
discoideum GN=DDB_G0281067 PE=1 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 27 NMIVAPPSGDLMSDLAAKLQLRRKGISGSHNQMNENSTSSGNLMDKLLHNIPPPLAAGS 85
N +V P+G + + + Q K + + +NS+ GNL +K+L ++ PLA GS
Sbjct: 182 NKVVLLPAGTQLGEYDQRTQGVFKNNMANPLVIGQNSSQCGNLYEKVLCDVSFPLAPGS 240
>sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005 GN=S PE=3 SV=1
Length = 1350
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 58 QMNENSTSSGNLMDKLLHNIPPPLAAGSSESDHDD 92
Q N SS +KL +N+PPPL S++ D D
Sbjct: 1198 QANSRYVSSDVKFEKLENNLPPPLLENSTDVDFKD 1232
>sp|Q8R757|PTH_THETN Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pth PE=3
SV=1
Length = 185
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 27 NMIVAPPSGDLMSDLAAKLQLRRKGISGSHNQMN 60
N+IV DL K+++RRKG SG HN MN
Sbjct: 85 NVIVVYDDKDLE---VGKIRIRRKGSSGGHNGMN 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,133,176
Number of Sequences: 539616
Number of extensions: 1320862
Number of successful extensions: 3780
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3743
Number of HSP's gapped (non-prelim): 41
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)