Query psy1060
Match_columns 101
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:31:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vcp_D N-WAsp, neural wiskott- 97.5 7.8E-05 2.7E-09 50.1 3.6 46 1-53 47-92 (93)
2 3lge_E Sorting nexin-9; comple 92.7 0.043 1.5E-06 31.0 1.3 16 85-100 4-19 (31)
3 3m3n_W N-WAsp, neural wiskott- 80.4 0.41 1.4E-05 32.9 0.5 19 32-50 60-78 (101)
4 2a40_C Wiskott-aldrich syndrom 35.4 11 0.00039 20.8 0.7 18 1-23 9-26 (32)
5 2v8f_C MDIA1, profilin IIA; al 33.3 19 0.00065 19.3 1.3 6 77-82 13-18 (26)
6 3fbi_A Mediator of RNA polymer 31.1 14 0.00048 24.4 0.7 12 71-82 8-19 (84)
7 3p8c_D Wiskott-aldrich syndrom 19.9 63 0.0022 25.3 2.6 60 36-101 220-279 (279)
8 1q0v_A Hydrophilic protein; ha 19.7 2E+02 0.0067 18.8 5.4 21 34-54 8-28 (81)
9 1yvw_A PRA-PH, phosphoribosyl- 14.0 85 0.0029 21.5 1.8 21 38-58 81-101 (115)
10 3m1f_V VOPL, putative uncharac 13.4 52 0.0018 18.2 0.5 16 1-21 10-25 (31)
No 1
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens}
Probab=97.49 E-value=7.8e-05 Score=50.12 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=32.5
Q ss_pred ChhHhhhCCCCccccccCcCCCCcccCcccCCCCCCHHHHHHHHHHHHhcccc
Q psy1060 1 MQAIRTAGGTRKAKLRCVDATPESDNNMIVAPPSGDLMSDLAAKLQLRRKGIS 53 (101)
Q Consensus 1 laaIR~AGGi~~~kLrkv~~~~~~~~~~~~~~~gGdLM~dL~~kL~~RRkgIS 53 (101)
|++||. |+ .||+|.+.+.+ +.. .....++|+++|+.+|++||+.|.
T Consensus 47 L~~IR~--G~---~LKkv~~~~~~-~~~-~~~~~~gl~~aLa~aL~~R~~ai~ 92 (93)
T 2vcp_D 47 LDQIRQ--GI---QLKSVADGQES-TPP-TPAPTSGIVGALMEVMQKRSKAIH 92 (93)
T ss_pred HHHHHc--cc---ccCCCcccccc-cCC-CCCCcccHHHHHHHHHHHHHHHhc
Confidence 567886 32 57999877552 211 223457899999999999999883
No 2
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=92.69 E-value=0.043 Score=30.97 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCC
Q psy1060 85 SSESDHDDTDTEPDWD 100 (101)
Q Consensus 85 ~~~~e~~~dd~e~~W~ 100 (101)
|.+...++|||+++|+
T Consensus 4 q~~~~G~DDDWDdeWD 19 (31)
T 3lge_E 4 QGPATGDDDDWDEDWD 19 (31)
T ss_pred cCCCCCCccccccccc
Confidence 4455678899999997
No 3
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus}
Probab=80.42 E-value=0.41 Score=32.91 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q psy1060 32 PPSGDLMSDLAAKLQLRRK 50 (101)
Q Consensus 32 ~~gGdLM~dL~~kL~~RRk 50 (101)
.+-++|++.|...|.+||-
T Consensus 60 ~~r~~Ll~aIr~al~lkk~ 78 (101)
T 3m3n_W 60 SGRDALLDQIRQGIQLKKT 78 (101)
T ss_dssp -------------------
T ss_pred CchHHHHHHHHHHHHhccc
Confidence 3567777777777777663
No 4
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=35.39 E-value=11 Score=20.82 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=11.3
Q ss_pred ChhHhhhCCCCccccccCcCCCC
Q psy1060 1 MQAIRTAGGTRKAKLRCVDATPE 23 (101)
Q Consensus 1 laaIR~AGGi~~~kLrkv~~~~~ 23 (101)
|.+||.- .+||+|.+++.
T Consensus 9 L~~Ir~G-----~~Lk~Ve~~~~ 26 (32)
T 2a40_C 9 LSAIRQG-----FQLRRVEEQRE 26 (32)
T ss_dssp HHHHHHC-----CCCBCCCC---
T ss_pred HHHHHcc-----CCcCCcccccc
Confidence 5688863 57799987755
No 5
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=33.33 E-value=19 Score=19.29 Aligned_cols=6 Identities=67% Similarity=1.375 Sum_probs=4.1
Q ss_pred CCCCCC
Q psy1060 77 IPPPLA 82 (101)
Q Consensus 77 IPpPp~ 82 (101)
|||||+
T Consensus 13 iPpPpp 18 (26)
T 2v8f_C 13 IPPPPP 18 (26)
T ss_pred CCCCCC
Confidence 777665
No 6
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=31.07 E-value=14 Score=24.35 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=7.3
Q ss_pred HHhhhcCCCCCC
Q psy1060 71 DKLLHNIPPPLA 82 (101)
Q Consensus 71 ~r~S~~IPpPp~ 82 (101)
+.||+..||||+
T Consensus 8 n~isSlfPpPPP 19 (84)
T 3fbi_A 8 NEVSSLYPPPPP 19 (84)
T ss_dssp ----CCSCCCCG
T ss_pred cccccCCCCCCc
Confidence 358999999996
No 7
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=19.85 E-value=63 Score=25.32 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCCCCCCCCccHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1060 36 DLMSDLAAKLQLRRKGISGSHNQMNENSTSSGNLMDKLLHNIPPPLAAGSSESDHDDTDTEPDWDD 101 (101)
Q Consensus 36 dLM~dL~~kL~~RRkgISGs~~~~~~~~~~~~~~~~r~S~~IPpPp~~~~~~~e~~~dd~e~~W~~ 101 (101)
+||.++..=...|+--=.+.+....+ ...+++-.=++.-|- -.-+++++++|+++.+|.+
T Consensus 220 ~Ll~air~g~~l~kve~~~~~~~~~~--~~~~~va~Il~rr~a----~~~s~~~~~s~~d~~~w~e 279 (279)
T 3p8c_D 220 VLLEAIRKGIQLRKVEEQREQEAKHE--RIENDVATILSRRIA----VEYSDSEDDSEFDEVDWLE 279 (279)
T ss_dssp HHHHHHHHHHHHHHTSSCCC-----------CCHHHHHHHHHH----TTTC---------------
T ss_pred HHHHHHHhcCcccccchhhhhhhhhc--cccccHHHHHHHHHH----HhhccccCccccccccccC
Confidence 57777776666665444443332221 122334333333332 2345566678888889964
No 8
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=19.68 E-value=2e+02 Score=18.80 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHhccccC
Q psy1060 34 SGDLMSDLAAKLQLRRKGISG 54 (101)
Q Consensus 34 gGdLM~dL~~kL~~RRkgISG 54 (101)
-.++=.||..+|+|==+-..+
T Consensus 8 ~~~eDeDLkrAieLSL~Es~~ 28 (81)
T 1q0v_A 8 PEDEEELIRKAIELSLKESRN 28 (81)
T ss_dssp CSSHHHHHHHHHHHHHHCCCC
T ss_pred ccCchHHHHHHHHHhHHHHcC
Confidence 456778899998887665433
No 9
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=13.98 E-value=85 Score=21.55 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhccccCCCCC
Q psy1060 38 MSDLAAKLQLRRKGISGSHNQ 58 (101)
Q Consensus 38 M~dL~~kL~~RRkgISGs~~~ 58 (101)
..|+.+.|..|++||.-+..+
T Consensus 81 l~dV~~eL~~R~~gi~eK~~R 101 (115)
T 1yvw_A 81 LEDVMREVKERNGKLSRVGDR 101 (115)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhCCchhhccC
Confidence 578999999999988766543
No 10
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=13.38 E-value=52 Score=18.18 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=9.7
Q ss_pred ChhHhhhCCCCccccccCcCC
Q psy1060 1 MQAIRTAGGTRKAKLRCVDAT 21 (101)
Q Consensus 1 laaIR~AGGi~~~kLrkv~~~ 21 (101)
||.||+. .|||+..+.
T Consensus 10 MEqIRqG-----VkLr~~~ks 25 (31)
T 3m1f_V 10 MEQIRQG-----VKLKSATKS 25 (31)
T ss_dssp HHHHHHC-----CCCBCC---
T ss_pred HHHHHhh-----hccccCCCC
Confidence 6788874 677876543
Done!