Query psy1060
Match_columns 101
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 22:31:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1060.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1060hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1juqa_ a.118.9.2 (A:) ADP-rib 13.2 88 0.0064 19.8 3.4 15 37-53 124-138 (151)
2 d1p3da1 c.5.1.1 (A:11-106) UDP 12.9 43 0.0031 19.8 1.6 26 32-57 15-40 (96)
3 d2bskb1 g.83.1.1 (B:13-77) Mit 7.9 75 0.0054 17.9 1.3 18 36-53 4-23 (65)
4 d1d2ta_ a.111.1.1 (A:) Bacteri 7.7 64 0.0047 21.9 1.1 9 75-83 23-31 (224)
5 d1mdya_ a.38.1.1 (A:) Myod B/H 7.4 76 0.0055 17.7 1.2 15 67-81 28-42 (68)
6 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 7.3 70 0.0051 18.7 1.0 26 32-57 8-33 (89)
7 d2o8ra2 d.322.1.2 (A:113-317) 5.2 67 0.0049 21.6 0.0 20 33-52 132-151 (205)
8 d1nlwa_ a.38.1.1 (A:) Mad prot 4.9 2.4E+02 0.017 15.4 2.4 15 67-81 17-31 (79)
9 d1cfra_ c.52.1.7 (A:) Restrict 4.9 1.2E+02 0.0087 22.2 1.2 17 34-50 204-220 (283)
10 d2i0za1 c.3.1.8 (A:1-192,A:362 4.8 2.3E+02 0.017 17.2 2.6 18 34-52 9-26 (251)
No 1
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.19 E-value=88 Score=19.80 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcccc
Q psy1060 37 LMSDLAAKLQLRRKGIS 53 (101)
Q Consensus 37 LM~dL~~kL~~RRkgIS 53 (101)
.|.++++.| |++||.
T Consensus 124 ~~~~~Y~~L--k~~Gv~ 138 (151)
T d1juqa_ 124 KIKDAYHML--KRQGIV 138 (151)
T ss_dssp HHHHHHHHH--HHTTSC
T ss_pred HHHHHHHHH--HHcCCC
Confidence 477888876 778873
No 2
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=12.86 E-value=43 Score=19.78 Aligned_cols=26 Identities=35% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCC
Q psy1060 32 PPSGDLMSDLAAKLQLRRKGISGSHN 57 (101)
Q Consensus 32 ~~gGdLM~dL~~kL~~RRkgISGs~~ 57 (101)
+-||-=|++|+.-|..+---|+|+..
T Consensus 15 GigG~GMs~LA~~L~~~G~~VsGSD~ 40 (96)
T d1p3da1 15 GIGGAGMSGIAEILLNEGYQISGSDI 40 (96)
T ss_dssp TTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred EECHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56888899999999999999999964
No 3
>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.90 E-value=75 Score=17.90 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHH--hcccc
Q psy1060 36 DLMSDLAAKLQLR--RKGIS 53 (101)
Q Consensus 36 dLM~dL~~kL~~R--RkgIS 53 (101)
++|.+|||+|..+ .|=|.
T Consensus 4 ~~~~~m~nklt~~Cf~kCV~ 23 (65)
T d2bskb1 4 EMMADMYNRMTSACHRKCVP 23 (65)
T ss_dssp TTTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 4688999999775 55554
No 4
>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
Probab=7.72 E-value=64 Score=21.93 Aligned_cols=9 Identities=44% Similarity=0.814 Sum_probs=6.5
Q ss_pred hcCCCCCCC
Q psy1060 75 HNIPPPLAA 83 (101)
Q Consensus 75 ~~IPpPp~~ 83 (101)
.++||||..
T Consensus 23 ~~lppPP~~ 31 (224)
T d1d2ta_ 23 ALLPPPPAV 31 (224)
T ss_dssp HHSCCCCCT
T ss_pred hhcCCCCCC
Confidence 578888854
No 5
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.37 E-value=76 Score=17.66 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=12.7
Q ss_pred ccHHHHhhhcCCCCC
Q psy1060 67 GNLMDKLLHNIPPPL 81 (101)
Q Consensus 67 ~~~~~r~S~~IPpPp 81 (101)
+..|+.|..+||+.+
T Consensus 28 n~~~~~L~~llP~~~ 42 (68)
T d1mdya_ 28 NEAFETLKRSTSSNP 42 (68)
T ss_dssp HHHHHHHHTTSCSCT
T ss_pred HHHHHHHHHHCCCCC
Confidence 568999999999765
No 6
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=7.32 E-value=70 Score=18.71 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCC
Q psy1060 32 PPSGDLMSDLAAKLQLRRKGISGSHN 57 (101)
Q Consensus 32 ~~gGdLM~dL~~kL~~RRkgISGs~~ 57 (101)
+-||-=|+.|+.-|..+--.|||+..
T Consensus 8 GIgG~GMs~LA~~L~~~G~~VsGSD~ 33 (89)
T d1j6ua1 8 GIGGIGMSAVALHEFSNGNDVYGSNI 33 (89)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECS
T ss_pred eECHHHHHHHHHHHHhCCCeEEEEeC
Confidence 44788899998888888888899964
No 7
>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=5.17 E-value=67 Score=21.60 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhccc
Q psy1060 33 PSGDLMSDLAAKLQLRRKGI 52 (101)
Q Consensus 33 ~gGdLM~dL~~kL~~RRkgI 52 (101)
...||+..+...|.+||.|-
T Consensus 132 ~~~dll~~i~~~Lk~R~~g~ 151 (205)
T d2o8ra2 132 RPEDLPGEIRKKVKTRKLGA 151 (205)
T ss_dssp --------------------
T ss_pred hhccHHHHHHHHHHhhcccc
Confidence 36899999999999999874
No 8
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.88 E-value=2.4e+02 Score=15.43 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=12.3
Q ss_pred ccHHHHhhhcCCCCC
Q psy1060 67 GNLMDKLLHNIPPPL 81 (101)
Q Consensus 67 ~~~~~r~S~~IPpPp 81 (101)
+..|+.|.++||+.+
T Consensus 17 n~~f~~L~~llP~~~ 31 (79)
T d1nlwa_ 17 RLSLEKLKGLVPLGP 31 (79)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHhCccCC
Confidence 458999999999654
No 9
>d1cfra_ c.52.1.7 (A:) Restriction endonuclease Cfr10I {Citrobacter freundii [TaxId: 546]}
Probab=4.85 E-value=1.2e+02 Score=22.23 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHhc
Q psy1060 34 SGDLMSDLAAKLQLRRK 50 (101)
Q Consensus 34 gGdLM~dL~~kL~~RRk 50 (101)
=|++|..|+.-|+||-=
T Consensus 204 EgnimKaL~~hlq~r~w 220 (283)
T d1cfra_ 204 EGSLMKALYTHLQTRTW 220 (283)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHheee
Confidence 58999999999999975
No 10
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}
Probab=4.83 E-value=2.3e+02 Score=17.23 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHhccc
Q psy1060 34 SGDLMSDLAAKLQLRRKGI 52 (101)
Q Consensus 34 gGdLM~dL~~kL~~RRkgI 52 (101)
||++.. |+.++.+.|+|+
T Consensus 9 GaG~aG-l~aA~~la~~G~ 26 (251)
T d2i0za1 9 GGGPSG-LMAAIGAAEEGA 26 (251)
T ss_dssp CCSHHH-HHHHHHHHHTTC
T ss_pred CcCHHH-HHHHHHHHHCCC
Confidence 444444 666777778776
Done!