RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1060
         (101 letters)



>gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane
           bound guanylyl cyclases.  Ligand-binding domain of
           membrane bound guanylyl cyclases (GCs), which are known
           to be activated by sperm-activating peptides (SAPs),
           such as speract or resact. These ligand peptides are
           released by a range of invertebrates to stimulate the
           metabolism and motility of spermatozoa and are also
           potent chemoattractants. These GCs contain a single
           transmembrane segment, an extracellular ligand binding
           domain, and intracellular protein kinase-like and
           cyclase catalytic domains. GCs of insect and nematodes,
           which exhibit high sequence similarity to the speract
           receptor are also included in this model.
          Length = 404

 Score = 26.9 bits (60), Expect = 1.9
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 52  ISGSHNQMNENSTSSGNLMDKLLHNIPPPLAAGSS 86
           I+G    ++EN  + GN    +L   P P     S
Sbjct: 359 ITGFDMYIDENGDAEGNYS--VLALQPIPPGDNGS 391


>gnl|CDD|107300 cd06305, PBP1_methylthioribose_binding_like,
           Methylthioribose-binding protein-like of ABC-type
           transport systems that belong to a family of
           pentose/hexose sugar-binding proteins of the type I
           periplasmic binding protein (PBP1) superfamily.
           Methylthioribose-binding protein-like of ABC-type
           transport systems that belong to a family of
           pentose/hexose sugar-binding proteins of the type I
           periplasmic binding protein (PBP1) superfamily, which
           consists of two alpha/beta globular domains connected by
           a three-stranded hinge. This Venus flytrap-like domain
           undergoes transition from an open to a closed
           conformational state upon ligand binding. The
           sugar-binding domain of the periplasmic proteins in this
           group is also homologous to the ligand-binding domain of
           eukaryotic receptors such as metabotropic glutamate
           receptor (mGluR), DNA-binding transcriptional repressors
           such as LacI and GalR.
          Length = 273

 Score = 26.5 bits (59), Expect = 2.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 2   QAIRTAGGTRKAKLRCVDATPESDNNMIVAPPS 34
           QA+  AG T + K+  VD +PE D  ++  P S
Sbjct: 200 QALDEAGRTDEIKIYGVDISPE-DLQLMREPDS 231


>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase.
          Length = 918

 Score = 25.6 bits (56), Expect = 4.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 58  QMNENSTSSGNLMDKLLHNIPPPLAAGSSESD 89
           ++  N+ S+G L   LLHN+ P +AA  S SD
Sbjct: 324 EIKRNTFSAGRL-KALLHNLIPSIAAALSSSD 354


>gnl|CDD|107314 cd06319, PBP1_ABC_sugar_binding_like_10, Periplasmic sugar-binding
           domain of uncharacterized ABC-type transport systems.
           Periplasmic sugar-binding domain of uncharacterized
           ABC-type transport systems that share homology with a
           family of pentose/hexose sugar-binding proteins of the
           type I periplasmic binding protein superfamily, which
           consists of two domains connected by a three-stranded
           hinge. The substrate specificity of this group is not
           known, but it is predicted to be involved in the
           transport of sugar-containing molecules and chemotaxis.
          Length = 277

 Score = 25.5 bits (56), Expect = 5.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 1   MQAIRTAGGTRKAKLRCVDATPE 23
           + AI TAG T K  L C DA PE
Sbjct: 201 LDAIATAGKTGKVLLICFDAEPE 223


>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase
           inhibitor.
          Length = 520

 Score = 25.2 bits (55), Expect = 8.5
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 15/56 (26%)

Query: 52  ISGSHNQMNENSTSSGNLMDKLLHNIPPPLA--------AGSSESDHDDTDTEPDW 99
           ++GS +Q+       G+ + +LL  + PP +         G+    H  +   P W
Sbjct: 142 VAGSLSQV-------GSTVRELLTMVHPPPSKGKSKPIGGGTMTKKHSGSSKFPSW 190


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.308    0.126    0.363 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,980,632
Number of extensions: 390365
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 12
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.4 bits)