RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1060
         (101 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 19/72 (26%)

Query: 1   MQAIRTAGGTRKAKLRCVDAT----PE----------SDNNMIVAPPSGDLMSDLAAKLQ 46
           M +I     T++     V+ T    P              N++V+ P   L       L 
Sbjct: 338 MLSIS--NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY---GLNLT 392

Query: 47  LRRKGISGSHNQ 58
           LR+       +Q
Sbjct: 393 LRKAKAPSGLDQ 404


>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
           metabolism, allostery, decarboxylase, allosteric enzyme,
           magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
           3blv_B
          Length = 354

 Score = 26.0 bits (58), Expect = 2.5
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 9/49 (18%)

Query: 18  VDAT-------PES-DNNMIVAP-PSGDLMSDLAAKLQLRRKGISGSHN 57
           +D +       P +  + + V P   GD++SDL + L     G++ S N
Sbjct: 221 IDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSAN 269


>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
           G-domains, ligand binding protein; HET: GDP; 1.90A
           {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
          Length = 439

 Score = 25.5 bits (57), Expect = 3.8
 Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 6/42 (14%)

Query: 52  ISGSHNQMNENSTSSGNLMDKLLHNIPPPLAAGSSESDHDDT 93
           +S  HN       +   +++ ++  +        S+ +  D 
Sbjct: 145 VSAEHNI------NLDTMLETIIKKLEEKGLDLESKPEITDA 180


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.308    0.126    0.363 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,506,471
Number of extensions: 75002
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 5
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.9 bits)