RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1060
         (101 letters)



>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 168

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 31 APPSGDLMSDLAAKLQLRRKGISG 54
           P +GD+ +D     Q R  G+  
Sbjct: 11 TPVAGDIRADFQCFQQARAAGLLS 34


>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase
          C {Listeria monocytogenes [TaxId: 1639]}
          Length = 274

 Score = 24.4 bits (52), Expect = 2.8
 Identities = 11/41 (26%), Positives = 15/41 (36%)

Query: 36 DLMSDLAAKLQLRRKGISGSHNQMNENSTSSGNLMDKLLHN 76
            MS L     L    I G+H+ M+ N   +  L   L   
Sbjct: 5  QWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQT 45


>d2ptda_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase
          C {Bacillus cereus [TaxId: 1396]}
          Length = 296

 Score = 24.4 bits (52), Expect = 3.5
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 36 DLMSDLAAKLQLRRKGISGSHNQM 59
            M  +   + L R  I G+H+  
Sbjct: 12 KWMQPIPDSIPLARISIPGTHDSG 35


>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus
           sp. [TaxId: 1409]}
          Length = 276

 Score = 23.6 bits (49), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 20  ATPESDNNMIVAPPSGDLMSDLA 42
           A     N +++AP +G L+SDL 
Sbjct: 236 AAGHFRNGILLAPATGALISDLI 258


>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
           subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 473

 Score = 23.4 bits (50), Expect = 7.0
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 71  DKLLHNIPPPLAAGSSESDHDDTDTEPDWD 100
           D+++  +P P +   +  +  D D +P  D
Sbjct: 2   DRVVKAVPFPPSHRLTAKEVFDNDGKPRVD 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.126    0.363 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,234
Number of extensions: 12557
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 6
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.5 bits)