BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10604
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 68/125 (54%), Gaps = 19/125 (15%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T AAR GHL+ ++ LLEAG D+N + + T AAR GHL+ ++ LLEAG D+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
+ NG LHLAA++GH VVK LL+ G V+A K G T
Sbjct: 63 AKD------------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 190 LHIAA 194
LH+AA
Sbjct: 105 LHLAA 109
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T AAR GHL+ ++ LLEAG D+N + + T AAR GHL+ ++ LLEAG D+N
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
+ NG LHLAA++GH VVK LL+ G
Sbjct: 96 AKD------------------KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
NG LHLAA++GH VVK LL+ G V+A K G T LH+AA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + D T AAR GHL+ + LL+AG
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + +G LHLAA++GH +V+ LLK G V+A K
Sbjct: 71 ADVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 112
Query: 186 GNTALHIAA 194
G T LH+AA
Sbjct: 113 GYTPLHLAA 121
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 19/127 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D T AAR GHL+ + LL+AG D+N + D T AAR GHL+ + LL+AG
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
D+N + +G LHLAA++GH +V+ LLK G V+A K G
Sbjct: 105 DVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Query: 187 NTALHIA 193
TA I+
Sbjct: 147 KTAFDIS 153
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N + +G LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKD------------------KDGYTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAA++GH +V+ LLK G V+A K G T LH+AA
Sbjct: 53 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 19/128 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D L AARAG D++R L+ G D+N + D T AAR GHL+ + LL+AG
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
D+N + +G LHLAA++GH +V+ LLK G V+A K G
Sbjct: 60 DVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 187 NTALHIAA 194
T LH+AA
Sbjct: 102 YTPLHLAA 109
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
D T AAR GHL+ + LL+AG D+N + D T AAR GHL+ + LL+AG
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + +G LHLAA++GH +V+ LLK G V+A K
Sbjct: 92 ADVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 186 GNTALHIA 193
G T +A
Sbjct: 134 GKTPFDLA 141
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 19/128 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D L AARAG D++R L+ G D+N + D T AAR GHL+ + LL+AG
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
D+N + +G LHLAA++GH +V+ LLK G V+A K G
Sbjct: 60 DVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 187 NTALHIAA 194
T LH+AA
Sbjct: 102 YTPLHLAA 109
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 20/139 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
D T AAR GHL+ + LL+AG D+N + D T AAR GHL+ + LL+AG
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + +G LHLAA++GH +V+ LLK G V+A K
Sbjct: 92 ADVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 186 GNTALHIAALDSLVTDIAS 204
G T + A+D+ DIA
Sbjct: 134 GKTPFDL-AIDNGNEDIAE 151
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N ++ +T AA+ GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + N G LHLAA +GH +V+ LLK G V+A +
Sbjct: 71 ADVNAWD------------------NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE 112
Query: 186 GNTALHIAALDS 197
G T LH+AA D
Sbjct: 113 GFTPLHLAAYDG 124
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N ++ +D T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATD-NDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N S+ T G+ LHLAA GH +V+ LLK G V+A
Sbjct: 71 ADVNASDLT------------------GITPLHLAAATGHLEIVEVLLKHGADVNAYDND 112
Query: 186 GNTALHIAA 194
G+T LH+AA
Sbjct: 113 GHTPLHLAA 121
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N ++ N+G LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATD------------------NDGYTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAA +GH +V+ LLK G V+AS G T LH+AA
Sbjct: 53 LAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + +T AAR GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + +G LHLAAK GH +V+ LLK G V+A
Sbjct: 71 ADVNA------------------LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI 112
Query: 186 GNTALHIAA 194
G+T LH+AA
Sbjct: 113 GSTPLHLAA 121
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + + T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N ++ G+ LHLAA+ GH +V+ LLK G V+AS
Sbjct: 71 ADVNAKDSL------------------GVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112
Query: 186 GNTALHIAA 194
G T LH+AA
Sbjct: 113 GFTPLHLAA 121
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N S+ T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGW-TPLHLAAYFGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N ++ G+ LHLAA GH VV+ LLK G V+A+
Sbjct: 71 ADVNADDSL------------------GVTPLHLAADRGHLEVVEVLLKNGADVNANDHN 112
Query: 186 GNTALHIAA 194
G T LH+AA
Sbjct: 113 GFTPLHLAA 121
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N ++AS T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N I G LHLAA GH +V+ LLK G V+A
Sbjct: 71 ADVNA------------------IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW 112
Query: 186 GNTALHIAAL 195
G+T LH+AA+
Sbjct: 113 GDTPLHLAAI 122
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N ++A+ GL LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDAS------------------GLTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA GH +V+ LLK G V+A G+T LH+AAL
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAAL 89
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N ++AS T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N I G LHLAA GH +V+ LLK G V+A
Sbjct: 71 ADVNA------------------IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW 112
Query: 186 GNTALHIAAL 195
G+T LH+AA+
Sbjct: 113 GDTPLHLAAI 122
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N ++A+ GL LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDAS------------------GLTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA GH +V+ LLK G V+A G+T LH+AAL
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAAL 89
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
S+ + AA G+ D++++L+E G D+N S+ SD T AA+ GH + ++ L+ G
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASD-SDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N ++ +G LH AAK+GH +VK L+ G V+A
Sbjct: 61 ADVNAKDS------------------DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 102
Query: 186 GNTALHIAA 194
G T LH AA
Sbjct: 103 GRTPLHYAA 111
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 23/132 (17%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLE 123
D L AA AG D++R L+ G D+N A+D N T AA G L+ + LL+
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVN---ATDDNGLTPLHLAAANGQLEIVEVLLK 60
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
G D+N S++ G+ LHLAA DGH +V+ LLK G V+A
Sbjct: 61 NGADVNASDSA------------------GITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 184 KKGNTALHIAAL 195
+ G T LH+AAL
Sbjct: 103 RAGWTPLHLAAL 114
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
D L AA AG D++R L+ G D+N ++ +NGL LHL
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATD------------------DNGLTPLHL 45
Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDS 197
AA +G +V+ LLK G V+AS G T LH+AA D
Sbjct: 46 AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N +AS T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + + G+ L LAA GH +V+ LLK G V+A+ +
Sbjct: 71 ADVNA------------------VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112
Query: 186 GNTALHIAAL 195
G+T LH+AA+
Sbjct: 113 GHTPLHLAAM 122
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + D T AA+ GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALD-EDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + N G+ LHLAA GH +V+ LLK G V+A K
Sbjct: 71 ADVNAED------------------NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N + +GL LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNA------------------LDEDGLTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA+ GH +V+ LLK G V+A G T LH+AA+
Sbjct: 53 LAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N ++ + T AA +GHL+ + LL+ G
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D++ S+ G LHLAA GH +V+ LLK G V+A
Sbjct: 71 ADVDASDVF------------------GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD 112
Query: 186 GNTALHIAA 194
G T LH+AA
Sbjct: 113 GMTPLHLAA 121
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N ++ N G LH
Sbjct: 11 GSDLGRKLLEAARAGQDDEVRILMANGADVNAAD------------------NTGTTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAA GH +V+ LLK G VDAS G T LH+AA
Sbjct: 53 LAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + S T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDS-GKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKK------LDNQLNIHQKNIKNN---------GLNALHLAAKDGHTTVVK 170
D+N ++ L L I + +KN G LHLAA GH +V+
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 171 ALLKGGCKVDASTKKGNTALHIA 193
LLK G V+A K G TA I+
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDIS 153
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N + + K LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGK------------------TPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA GH +V+ LLK G V+A+ K G+T LH+AAL
Sbjct: 53 LAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL 89
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N ++ T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGW-TPLHLAAYWGHLEIVEVLLKNG 70
Query: 126 VDIN---TSNATSKKLD---NQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
D+N T +T L L I + +KN NG+ LHLAA GH +V+
Sbjct: 71 ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 171 ALLKGGCKVDASTKKGNTALHIA 193
LLK G V+A K G TA I+
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDIS 153
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N ++ G LH
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAADVV------------------GWTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAA GH +V+ LLK G V+A G+T LH+AA
Sbjct: 53 LAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA 88
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
+ AA G+ D++++LLE G D+N S+ SD T AA GH + ++ LL G D N
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASD-SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
++ +G LHLAA++GH VVK LL G +A G T LH
Sbjct: 67 DS------------------DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 108
Query: 192 IAA 194
+AA
Sbjct: 109 LAA 111
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T AAR GHL+ ++ LLEAG D+N + + T AAR GHL+ ++ LLEAG D+N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
+ NG LHLAA++GH VVK LL+ G
Sbjct: 63 AKD------------------KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 18/91 (19%)
Query: 104 TSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKD 163
T AAR GHL+ ++ LLEAG D+N + NG LHLAA++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD------------------KNGRTPLHLAARN 45
Query: 164 GHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
GH VVK LL+ G V+A K G T LH+AA
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
NG LHLAA++GH VVK LL+ G V+A K G T LH+AA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N ++ T GHL+ + LL+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGI-TPLHLVVNNGHLEIIEVLLKYA 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N S+ + G LHLAA GH +V+ LLK G V+A +
Sbjct: 71 ADVNASDKS------------------GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ 112
Query: 186 GNTALHIAALDS 197
G T LH+AA D
Sbjct: 113 GYTPLHLAAEDG 124
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 79 GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKL 138
GHL+ + LL+ D+N S+ S L A R GHL+ + LL+ G D+N +
Sbjct: 58 GHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR-GHLEIVEVLLKYGADVNA-------M 109
Query: 139 DNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
D Q G LHLAA+DGH +V+ LLK G V+A K G TA I+
Sbjct: 110 DYQ-----------GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N ++ G+ LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNANDWF------------------GITPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
L +GH +++ LLK V+AS K G T LH+AA
Sbjct: 53 LVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAA 88
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + +T AA GH + + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHD-DQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + +G LHLAA +GH +V+ LLK G V+A
Sbjct: 71 ADVNARD------------------TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY 112
Query: 186 GNTALHIAA 194
G T LH+AA
Sbjct: 113 GLTPLHLAA 121
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N + + G LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAHD------------------DQGSTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAA GH +V+ LLK G V+A G T LH+AA
Sbjct: 53 LAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA 88
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + + T AA +GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D++ ++ G LHLAA GH +V+ LLK G V+A
Sbjct: 71 ADVDAADVY------------------GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT 112
Query: 186 GNTALHIAA 194
G+T LH+AA
Sbjct: 113 GSTPLHLAA 121
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N + N GL LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILIANGADVNA------------------VDNTGLTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA GH +V+ LLK G VDA+ G T LH+AA+
Sbjct: 53 LAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM 89
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N +N NT AA HL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + N+G LHLAA GH +V+ LLK G V+A K
Sbjct: 71 ADVNAHD------------------NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N A +K G LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVN---ANDRK---------------GNTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA H +V+ LLK G V+A G+T LH+AAL
Sbjct: 53 LAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE 120
YD Y T AA GHL+ + LL G D+N + ++ T AA GHL+ +
Sbjct: 30 AYDHYG--RTPLHMAAAVGHLEIVEVLLRNGADVNAVD-TNGTTPLHLAASLGHLEIVEV 86
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
LL+ G D+N +AT G+ L+LAA GH +V+ LLK G V+
Sbjct: 87 LLKYGADVNAKDAT------------------GITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 181 ASTKKGNTALHIA 193
A K G TA I+
Sbjct: 129 AQDKFGKTAFDIS 141
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D L AARAG D++R L+ G D N + T AA GHL+ + LL G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHY-GRTPLHMAAAVGHLEIVEVLLRNGA 59
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
D+N + NG LHLAA GH +V+ LLK G V+A G
Sbjct: 60 DVNA------------------VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG 101
Query: 187 NTALHIAA 194
T L++AA
Sbjct: 102 ITPLYLAA 109
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
+ AA G+ D++++L+E G D+N S+ SD T AA GH + ++ L+ G D+N
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASD-SDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
++ +G LH AA++GH VVK L+ G V+A G T LH
Sbjct: 67 DS------------------DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 108
Query: 192 IAA 194
AA
Sbjct: 109 HAA 111
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + +L A GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N +A G LHLAA GH + + LLK G V+A K
Sbjct: 71 ADVNAVDAI------------------GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N + GL L+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY------------------GLTPLY 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LA GH +V+ LLK G V+A G T LH+AA
Sbjct: 53 LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L A RAG D++R L+ G D+N + + T AA+ GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N S++ G LHLAA GH +V+ LL+ G V+A K
Sbjct: 71 ADVNASDSW------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L A RAG D++R L+ G D+N + + G+ LH
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNA------------------MDDAGVTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAAK GH +V+ LLK G V+AS G T LH+AA
Sbjct: 53 LAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
+ AA G+ D++++LLE G D N S+ SD T AA GH + ++ LL G D N
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASD-SDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
++ +G LH AA++GH +VK LL G +A G T LH
Sbjct: 67 DS------------------DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 108
Query: 192 IAA 194
AA
Sbjct: 109 YAA 111
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L A RAG D++R L+ G D+N + + T AA+ GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N S+ G LHLAA GH +V+ LL+ G V+A K
Sbjct: 71 ADVNASDIW------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L A RAG D++R L+ G D+N + + G+ LH
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNA------------------MDDAGVTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAAK GH +V+ LLK G V+AS G T LH+AA
Sbjct: 53 LAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L G D+N +N +T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + N G LHLAA H +V+ LLK G V+A K
Sbjct: 71 ADVNATG------------------NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L G D+N ++ G LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILTANGADVNANDYW------------------GHTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA GH +V+ LLK G V+A+ G T LH+AA
Sbjct: 53 LAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L A RAG D++R L+ G D+N + + T AA+ GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + G LHLAA GH +V+ LL+ G V+A K
Sbjct: 71 ADVNARDIW------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L A RAG D++R L+ G D+N + + G+ LH
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNA------------------MDDAGVTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAAK GH +V+ LLK G V+A G T LH+AA
Sbjct: 53 LAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + T AA HL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N +A G LHL A GH +V+ LLK G V+A K
Sbjct: 71 ADVNAIDAI------------------GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
G TA I+
Sbjct: 113 GKTAFDIS 120
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+N + GL LH
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDKV------------------GLTPLH 52
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LAA + H +V+ LLK G V+A G T LH+ A+
Sbjct: 53 LAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 18/95 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
+ D NT AA+ GH +++++LL G D+N A SK +G LH
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSK---------------DGNTPLH 47
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
LAAK+GH +VK LL G V+A +K GNT H+A
Sbjct: 48 LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 19/117 (16%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D NT AA+ GH +++++LL G D+N + + D NT AA+ GH + ++ LL G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
D+ NA SK +G HLA K+GH +VK L G V+A +
Sbjct: 67 DV---NARSK---------------DGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+G LH AAK+GH VK LL G V+A +K GNT LH+AA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA 50
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T A+ GHL ++ LL+ G N SN T AARAGH + + LL+ N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQ-----N 69
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
+ +K D+Q LH AA+ GHT +VK LL+ + +T G+T
Sbjct: 70 KAKVNAKAKDDQ-------------TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Query: 190 LHIAALDSLVTDI 202
LHIAA + V +
Sbjct: 117 LHIAAREGHVETV 129
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 60 PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR 119
P ++ Y T AA+ ++ R LL+ G N + T AA+ GH + +
Sbjct: 208 PAWNGY----TPLHIAAKQNQVEVARSLLQYGGSANAESVQG-VTPLHLAAQEGHAEMVA 262
Query: 120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV 179
LL + N N +GL LHL A++GH V L+K G V
Sbjct: 263 LLLSKQANGNLGN------------------KSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 180 DASTKKGNTALHIAA 194
DA+T+ G T LH+A+
Sbjct: 305 DATTRMGYTPLHVAS 319
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 22/146 (15%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D T AAR GH + ++ LLE + N + + +T AAR GH++ + LLE
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG-HTPLHIAAREGHVETVLALLEKEA 137
Query: 127 DINTSNATSKKLDNQLNI------------------HQKNIKNNGLNALHLAAKDGHTTV 168
+ +KK L++ H NGL LH+A + +
Sbjct: 138 ---SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 194
Query: 169 VKALLKGGCKVDASTKKGNTALHIAA 194
VK LL G + G T LHIAA
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAA 220
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 19/161 (11%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T AA+ GH + + LL + N N S T A+ GH+ L++ GV ++
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSG-LTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 130 T------------SNATSKKLDNQLNIHQKNIKNN---GLNALHLAAKDGHTTVVKALLK 174
S+ + KL L HQ ++ G + LH AA+ GHT +V LLK
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 175 GGCKVDASTKKGNTALHIAALDSL--VTDIASSAITDATSL 213
G + + G T L IA VTD+ +TD TS
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVL-KVVTDETSF 405
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALD 196
NG LH+AAK V ++LL+ G +A + +G T LH+AA +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 23/136 (16%)
Query: 81 LDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN 140
LD ++ LL G + S A + T AA+ ++ R LL+ G ++NA S +
Sbjct: 192 LDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYG---GSANAESVQ--- 244
Query: 141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVT 200
G+ LHLAA++GH +V LL + K G T LH+ A + V
Sbjct: 245 ------------GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292
Query: 201 D----IASSAITDATS 212
I + DAT+
Sbjct: 293 VADVLIKHGVMVDATT 308
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
L LH+A+ GH +VK LL+ G + S K T LH+AA
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA 55
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA 160
D L AARAG D++R L+ G D+N + +G LHLA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKD------------------KDGYTPLHLA 42
Query: 161 AKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
A++GH +V+ LLK G V+A K G TA I+
Sbjct: 43 AREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D L AARAG D++R L+ G D+N + D T AAR GHL+ + LL+AG
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 127 DINTSNATSK 136
D+N + K
Sbjct: 60 DVNAQDKFGK 69
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 19/102 (18%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA AGH+D L++AG +I+T + D T + AA HL+ ++ L++AG ++ +A
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA- 75
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
G LHLAAK GH VV+ LL G
Sbjct: 76 -----------------EGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
C D T + AA HL+ ++ L++AG ++ +A + +T AA+ GH + ++ LL
Sbjct: 40 CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLS 98
Query: 124 AG-VDINTSN---------ATSKKLDNQLNI-----HQKNIKNNGLN-ALHLAAKDGHTT 167
G +D+N + AT K + + + NI++N N LH AA G
Sbjct: 99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158
Query: 168 VVKALLKGGCKVDASTKKGNTALHIAA 194
+ + LL C + A G++ LHIAA
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAA 185
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 18/86 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
AA AGH+D L++AG +I+T + + L AA++ H
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQR------------------TPLMEAAENNHLEA 59
Query: 169 VKALLKGGCKVDASTKKGNTALHIAA 194
VK L+K G VD +G+T LH+AA
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAA 85
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T + A H+D ++ LL G DIN + ++ N AA +G +D LL A D++
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRD-NEENICLHWAAFSGCVDIAEILLAAKCDLH 171
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
+NIH G + LH+AA++ V L V K+G T
Sbjct: 172 A-----------VNIH-------GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213
Query: 190 LHIAALDSLV 199
L A+L+S V
Sbjct: 214 LQCASLNSQV 223
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA----LDSLVTDIASSA 206
N + LH AA+ GH + L++ G +D ++ T L AA L+++ I + A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 207 ITD 209
+ D
Sbjct: 69 LVD 71
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 76 ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
A +G LD+L+E + A + T D T+ A AGH + + LL+ GV +N +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 70
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ G + LH+AA G +VKALL G V+A + G T LH AA
Sbjct: 71 ---------------DAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 76 ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
A +G LD+L+E + A + T D T+ A AGH + + LL+ GV +N +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 70
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ G + LH+AA G +VKALL G V+A + G T LH AA
Sbjct: 71 ---------------DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 76 ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
A +G L++L+E + A + T D T+ A AGH + + LL+ GV +N +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 70
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ G + LH+AA G +VKALL G +V+A + G T LH AA
Sbjct: 71 ---------------DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLR-AARAGHLDKLRELLEA 124
D T+ A AGH + + LL+ GV +N + D S L AA AG + ++ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--DAGWSPLHIAASAGRDEIVKALLGK 95
Query: 125 GVDINTSN---ATSKKLDNQLNIHQKNIK--NNGLN----------ALHLAAKDGHTTVV 169
G +N N T N H+ + G N A+H AA G+ ++
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 170 KALLKGGCKVDASTKKGNTALHIAALDSLVTD 201
LL + +GNT LH+A + V +
Sbjct: 156 HILLYYKASTNIQDTEGNTPLHLACDEERVEE 187
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 76 ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
A +G L++L+E + A + T D T+ A AGH + + LL+ GV +N +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 71
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ G + LH+AA G +VKALL G +V+A + G T LH AA
Sbjct: 72 ---------------DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLR-AARAGHLDKLRELLEA 124
D T+ A AGH + + LL+ GV +N + D S L AA AG + ++ LL
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--DAGWSPLHIAASAGRDEIVKALLGK 96
Query: 125 GVDINTSN---ATSKKLDNQLNIHQKNIK--NNGLN----------ALHLAAKDGHTTVV 169
G +N N T N H+ + G N A+H AA G+ ++
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 170 KALLKGGCKVDASTKKGNTALHIAALDSLVTD 201
LL + +GNT LH+A + V +
Sbjct: 157 HILLYYKASTNIQDTEGNTPLHLACDEERVEE 188
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+ + NG LH
Sbjct: 3 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD------------------KNGSTPLH 44
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
LAA++GH VVK LL+ G V+A K G TA I+
Sbjct: 45 LAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+ + + +T AAR GHL+ ++ LLEAG
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 126 VDINTSNATSK 136
D+N + K
Sbjct: 63 ADVNAQDKFGK 73
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
SD L AARAG D++R L+ G D+ + NG LH
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD------------------KNGSTPLH 62
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
LAA++GH VVK LL+ G V A K G TA I+
Sbjct: 63 LAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+ + + +T AAR GHL+ ++ LLEAG
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 126 VDINTSNATSK 136
D+ + K
Sbjct: 81 ADVXAQDKFGK 91
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLR-AARAGHLDKLRELLEAG 125
D L AARAG D++R L+ G T TS L AA+ GH LL AG
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLG---TSPLHLAAQYGHFSTTEVLLRAG 57
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
V S K+D LH+AA +GH +V+ LLK G V+A
Sbjct: 58 V----SRDARTKVDR--------------TPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 186 GNTALHIA 193
TALH A
Sbjct: 100 KMTALHWA 107
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA 160
D L AARAG D++R L+ G T G + LHLA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWL-------------------GTSPLHLA 41
Query: 161 AKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
A+ GH + + LL+ G DA TK T LH+AA
Sbjct: 42 AQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA 75
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA+ GH LL AGV + D T AA GH + + LL+ G D+N +
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+ ALH A + H VV+ L+K G V +K TA I+
Sbjct: 100 K------------------MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D FL A +G +++ LLE G DIN +N D T+ +A ++D ++ L+E G
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDNVDMVKFLVENGA 97
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
+IN + N G LH AA G+ + + L+ G V A +G
Sbjct: 98 NINQPD------------------NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139
Query: 187 NTALHI 192
+T L I
Sbjct: 140 DTPLDI 145
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 86 ELLEAGVDINTSNASDPNTSFLRAAR----AGHLDKLRELLEAGVDINTSNATSKKLDNQ 141
E+ GVDI + + LR AR +GH++ +R G ++ + A +
Sbjct: 158 EVNRQGVDIEAARKEEERI-MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 142 LNIHQK---NIKN-NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDS 197
L I + NIK+ +G LH AA G + L++ C ++A K G TA +A D
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Query: 198 L 198
L
Sbjct: 277 L 277
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA G+LD L+ G + N+ + A E+ GVDI +
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172
Query: 135 SKKL---DNQLNIHQKNIKN-----NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
+++ D + ++ +I + +G ALH+AA G+T V+K L++ V+ G
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Query: 187 NTALHIAA 194
T LH AA
Sbjct: 233 WTPLHAAA 240
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA+ GH + L+ G D++ + + A R +D R LL V +N +
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
K ALH A G+TTV+ LL+ G VDA KG +AL +A
Sbjct: 176 HKN-----------------TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 51/156 (32%)
Query: 72 FLRAARAGHLDKLRELLEAGVDINTSN--------------------------------A 99
++A + G ++ REL+EAG D+ +
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 100 SDPNTSFLRAA-RAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
D N++ L A R GHL + +L++ G D + I G + +H
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSL------------------IDGEGCSCIH 114
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LAA+ GHT++V L+ G VD + G T L AA
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
AARAG LD L+ LLE D+N DN+ N+ LHLAAK+GH V
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
V+ L+K V KG+TA +A L + +V+ + ++ AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL 115
AARAG LD L+ LLE D+N + ++ N AA+ GHL
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIED-NEGNLPLHLAAKEGHL 116
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G +H AA+ G ++ LL+ V+ +GN LH+AA
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
AARAG LD L+ LLE D+N DN+ N+ LHLAAK+GH V
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
V+ L+K V KG+TA +A L + +V+ + ++ AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL 115
AARAG LD L+ LLE D+N + ++ N AA+ GHL
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIED-NEGNLPLHLAAKEGHL 116
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
AARAG LD L+ LLE D+N DN+ N+ LHLAAK+GH V
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
V+ L+K V KG+TA +A L + +V+ + ++ AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A + GH ++ LL++ N + S NT + A GH + + LL+ G IN SN
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSG-NTPLIYACSGGHHELVALLLQHGASINASN-- 182
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
N G ALH A + H VV+ LL G V K+ TA+ A
Sbjct: 183 ----------------NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE 226
Query: 195 LDSLVTDI 202
+S + ++
Sbjct: 227 QNSKIMEL 234
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
D ++ AA G D + LL+ G + NA D A + GH ++ LL+
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLD-- 140
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
SNA K D +G L A GH +V LL+ G ++AS K
Sbjct: 141 -----SNAKPNKKDL-----------SGNTPLIYACSGGHHELVALLLQHGASINASNNK 184
Query: 186 GNTALHIAALDSLV 199
GNTALH A ++ V
Sbjct: 185 GNTALHEAVIEKHV 198
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
AARAG LD L+ LLE D+N DN+ N+ LHLAAK+GH V
Sbjct: 77 AARAGFLDTLQTLLENQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
V+ L+K V KG+TA +A L + +V+ + ++ AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL 115
AARAG LD L+ LLE D+N + ++ N AA+ GHL
Sbjct: 77 AARAGFLDTLQTLLENQADVNIED-NEGNLPLHLAAKEGHL 116
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G +H AA+ G ++ LL+ V+ +GN LH+AA
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 19/88 (21%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
AARAG LD L+ LLE D+N DN+ N+ LHLAAK+GH V
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL 195
V+ L+K V KG+TA +A L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARL 146
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL 115
AARAG LD L+ LLE D+N + ++ N AA+ GHL
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIED-NEGNLPLHLAAKEGHL 116
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRE 120
D S+ T + AAR L +LLE +A D N T+ L A G +R
Sbjct: 39 DVVSEYETPWWTAARKADEQALSQLLED----RDVDAVDENGRTALLFVAGLGSDKCVRL 94
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
L EAG D++ + GL ALH+AA VV+AL++ G ++
Sbjct: 95 LAEAGADLDHRDM-----------------RGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 181 ASTKKGNTALHIA 193
++G TAL +A
Sbjct: 138 VEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRE 120
D S+ T + AAR L +LLE +A D N T+ L A G +R
Sbjct: 40 DVVSEYETPWWTAARKADEQALSQLLED----RDVDAVDENGRTALLFVAGLGSDKCVRL 95
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
L EAG D++ + GL ALH+AA VV+AL++ G ++
Sbjct: 96 LAEAGADLDHRDM-----------------RGGLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 181 ASTKKGNTALHIA 193
++G TAL +A
Sbjct: 139 VEDERGLTALELA 151
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ G+ ALH A GHT +VK L++ G V+A+ G T LH AA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN----TSFLRAARAGHLDKLRELL 122
+P L ++ G D ++ ++ + S PN T+ A AGH + ++ L+
Sbjct: 36 NPLALLLDSSLEGEFDLVQRII-----YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV 90
Query: 123 EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAS 182
+ GV++N +++ +G LH AA + V K L++ G V A
Sbjct: 91 QFGVNVNAADS------------------DGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 183 T 183
T
Sbjct: 133 T 133
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ G+ ALH A GHT +VK L++ G V+A+ G T LH AA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 27/120 (22%)
Query: 68 PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN----TSFLRAARAGHLDKLRELLE 123
P L ++ G D ++ ++ + S PN T+ A AGH + ++ L++
Sbjct: 37 PLALLLDSSLEGEFDLVQRII-----YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
GV++N +++ +G LH AA + V K L++ G V A T
Sbjct: 92 FGVNVNAADS------------------DGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 19/87 (21%)
Query: 86 ELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH 145
ELL+ G N +AS + AAR G LD L+ L+E G D+N ++T
Sbjct: 59 ELLKQGASPNVQDASG-TSPVHDAARTGFLDTLKVLVEHGADVNALDST----------- 106
Query: 146 QKNIKNNGLNALHLAAKDGHTTVVKAL 172
G +HLA ++GH++VV L
Sbjct: 107 -------GSLPIHLAIREGHSSVVSFL 126
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGH 114
AAR G LD L+ L+E G D+N +++ L A R GH
Sbjct: 81 AARTGFLDTLKVLVEHGADVNALDSTGSLPIHL-AIREGH 119
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 86 ELLEAGVDINTSNASDPNTSFLR-AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI 144
ELL+ G N + S TS + AAR G LD L+ L+E G D+N + T
Sbjct: 59 ELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT---------- 106
Query: 145 HQKNIKNNGLNALHLAAKDGHTTVVKAL 172
G +HLA ++GHT VV L
Sbjct: 107 --------GALPIHLAVQEGHTAVVSFL 126
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNAS 100
AAR G LD L+ L+E G D+N + +
Sbjct: 81 AARTGFLDTLKVLVEHGADVNVPDGT 106
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 86 ELLEAGVDINTSNASDPNTSFLR-AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI 144
ELL+ G N + S TS + AAR G LD L+ L+E G D+N + T
Sbjct: 53 ELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT---------- 100
Query: 145 HQKNIKNNGLNALHLAAKDGHTTVVKAL 172
G +HLA ++GHT VV L
Sbjct: 101 --------GALPIHLAVQEGHTAVVSFL 120
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNAS 100
AAR G LD L+ L+E G D+N + +
Sbjct: 75 AARTGFLDTLKVLVEHGADVNVPDGT 100
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 19/87 (21%)
Query: 86 ELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH 145
ELL+ G N +AS + AAR G LD L+ L+E G D+N ++T
Sbjct: 61 ELLKQGASPNVQDASG-TSPVHDAARTGFLDTLKVLVEHGADVNALDST----------- 108
Query: 146 QKNIKNNGLNALHLAAKDGHTTVVKAL 172
G +HLA ++GH++VV L
Sbjct: 109 -------GSLPIHLAIREGHSSVVSFL 128
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGH 114
AAR G LD L+ L+E G D+N +++ L A R GH
Sbjct: 83 AARTGFLDTLKVLVEHGADVNALDSTGSLPIHL-AIREGH 121
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE---L 121
Y S L+AAR L K+++ L + IN T+ A + H + + L
Sbjct: 175 YEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 122 LEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
L G ++N N + + LH+AA+ H V++ L K G K++A
Sbjct: 234 LRKGANVNEKN------------------KDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275
Query: 182 STKKGNTALHIAAL 195
G TALH AAL
Sbjct: 276 LDSLGQTALHRAAL 289
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 71 SFLRAARAGHLDKLRELLEAGVDINTSNASD--PNTSFLRAARAGHLDKLRELLEAGVDI 128
L AAR+G+ +KL LL +++N +ASD +T AA + ++ LL+ G D+
Sbjct: 27 ELLEAARSGNEEKLMALLTP-LNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
+ + GL LH A GH V + LLK G V+A T
Sbjct: 85 HAKD------------------KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126
Query: 189 ALHIAA 194
LH AA
Sbjct: 127 PLHEAA 132
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 148 NIKNNGLN-ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL---DSLVTDIA 203
N+ N G + LHLAA GH +V+ LL+ ++A + GN LH A D + D+
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 204 SSA 206
++
Sbjct: 126 ANG 128
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
++G + LH A ++G + VV+ L+ G +++ + +T LH+AA
Sbjct: 37 DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 21/142 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A R G + L+ G IN N D +T AA GH D +++LL+ DIN N
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQYKADINAVN-- 102
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH--I 192
+G LH A G V + L+ G V K G +
Sbjct: 103 ----------------EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Query: 193 AALDSLVTDIASSAITDATSLP 214
A L L+ + A + +P
Sbjct: 147 APLRELLRERAEKMGQNLNRIP 168
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 148 NIKNNGLN-ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL---DSLVTDIA 203
N+ N G + LHLAA GH +V+ LL+ ++A + GN LH A D + D+
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 204 SSA 206
++
Sbjct: 121 ANG 123
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
++G + LH A ++G + VV+ L+ G +++ + +T LH+AA
Sbjct: 32 DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 21/142 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A R G + L+ G IN N D +T AA GH D +++LL+ DIN N
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQYKADINAVN-- 97
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH--I 192
+G LH A G V + L+ G V K G +
Sbjct: 98 ----------------EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Query: 193 AALDSLVTDIASSAITDATSLP 214
A L L+ + A + +P
Sbjct: 142 APLRELLRERAEKMGQNLNRIP 163
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 74 RAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELL-EAGVDINTSN 132
AA+ G+L LRE L+ V +N + + +T+ A GH D + L + +++N N
Sbjct: 79 EAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQPNIELNQQN 137
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
KL G ALH AA G+ +V+ LL G + D
Sbjct: 138 ----KL--------------GDTALHAAAWKGYADIVQLLLAKGARTD 167
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
+ F+ A + G LD++++ + G D+N + AA G L+ L LL G DI
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADI 61
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
N + + + L A +GH + VK LL G G T
Sbjct: 62 NAPD------------------KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 103
Query: 189 ALH 191
AL
Sbjct: 104 ALE 106
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 28/159 (17%)
Query: 71 SFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
S + A G LD+L+E L G ++ T + A+ G ++ +R LLE G D
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--- 61
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
+ +K+ + +AL LA+ G+T +V LL+ ++ G T L
Sbjct: 62 PHILAKERE---------------SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 191 -------HIAALDSLV---TDIASSAITDATSLPCSVIL 219
H+ +++L+ D+ + A + T + +V L
Sbjct: 107 LYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 28/159 (17%)
Query: 71 SFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
S + A G LD+L+E L G ++ T + A+ G ++ +R LLE G D
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--- 61
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
+ +K+ + +AL LA+ G+T +V LL+ ++ G T L
Sbjct: 62 PHILAKERE---------------SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 191 -------HIAALDSLV---TDIASSAITDATSLPCSVIL 219
H+ +++L+ D+ + A + T + +V L
Sbjct: 107 LYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 148 NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
N +NN LHLA + +ALL GC + +GNT LH+A
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA 160
DP R HL + L A V + T + T+ L + L K NG LHLA
Sbjct: 70 DPELRDFRGNTPLHLACEQGCL-ASVGVLTQSCTTPHLHSIL----KATNYNGHTCLHLA 124
Query: 161 AKDGHTTVVKALLKGGCKVDASTK-KGNTALHIAA 194
+ G+ +V+ L+ G V+A G TALH+A
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 148 NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+++N+ G ALHLAA G + V+ L G V + + G+TALH+A
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 149 IKNNGLNALHLAAKDGHTTVVKALL---KGGCKVDASTKKGNTALHIAAL 195
+ +G ALHLA H + LL G +D G TALH+AA+
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 148 NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+++N+ G ALHLAA G + V+ L G V + + G+TALH+A
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 149 IKNNGLNALHLAAKDGHTTVVKALL---KGGCKVDASTKKGNTALHIAAL 195
+ +G ALHLA H + LL G +D G TALH+AA+
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
+ F+ A + G LD++++ + G D+N + AA G L+ L LL G DI
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
N + + + L A +GH + VK LL G G T
Sbjct: 67 NAPD------------------KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Query: 189 ALH 191
A
Sbjct: 109 AFE 111
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 103 NTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAK 162
+ F+ A + G LD++++ + G D+N + +K LH AA
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK------------------PLHYAAD 49
Query: 163 DGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVT 200
G +++ LL G ++A K T L A + V+
Sbjct: 50 CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
DP R HL + L A V + T + T+ L + L K NG LH
Sbjct: 65 GCDPELRDFRGNTPLHLACEQGCL-ASVGVLTQSCTTPHLHSIL----KATNYNGHTCLH 119
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTK-KGNTALHIAA 194
LA+ G+ +V+ L+ G V+A G TALH+A
Sbjct: 120 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 148 NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
N +NN LHLA + +ALL GC + +GNT LH+A
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 83
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 36/164 (21%)
Query: 47 QEAKIHNAVISLEP-----CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASD 101
Q+ +H AVI+ +P DP R HL + L A V + T + +
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL-ASVGVLTQSCTT 100
Query: 102 PNT-SFLRAARA------------GHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKN 148
P+ S L+A G+L + L+ G D+N
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC-------------- 146
Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
NG ALHLA + +V LLK G V+ T +G + +
Sbjct: 147 ---NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
A G+ D ++ LL+ GVD+N + + T L A H+ ++ LLE+G D
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 155 NALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
+AL LA G+T +VK LL G V+ G T L
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
A G+ D ++ LL+ GVD+N + + T L A H+ ++ LLE+G D
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 155 NALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
+AL LA G+T +VK LL G V+ G T L
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 134 TSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG-CKVDASTKKGNTALHI 192
+++ LD +NI +NG ALH + + VV+ LL G CKVD + G + + +
Sbjct: 96 SARLLDYVVNI----ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML 151
Query: 193 AALDSLVT 200
AL +L T
Sbjct: 152 TALATLKT 159
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 65/156 (41%), Gaps = 34/156 (21%)
Query: 64 CYSDPNTSFLRAARAGHLDKLR----ELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR 119
C SD + +R HL R LL+ V+I SN NT+ + + ++
Sbjct: 76 CRSDAHPELVRR----HLVTFRAMSARLLDYVVNIADSNG---NTALHYSVSHANFPVVQ 128
Query: 120 ELLEAGV-DINTSN------------ATSKKLDN-----QL----NIHQKNIKNNGLNAL 157
+LL++GV ++ N AT K D+ QL NI+ K G AL
Sbjct: 129 QLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAK-ASQAGQTAL 187
Query: 158 HLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
LA G VVKALL V+ G+TAL A
Sbjct: 188 MLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
A G+ D ++ LL+ GVD+N + + T L A H+ ++ LLE+G D
Sbjct: 92 ACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 155 NALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
+AL LA G+T +VK LL G V+ G T L
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 122
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 157 LHLAAKDGHTTVVKALLK-GGCKVDASTKKGNTALHIAAL 195
L LAAK+ + LLK GC+V G TALHIAAL
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 148 NIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALD 196
N+ G + L AA G +V+ L++ G + A GNT LHI L
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
R+LLEA + T KKL +++ ++I+ LH AA +VV+ LL+ G
Sbjct: 10 RQLLEAAKAGDVE--TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 179 VDASTKKGNTALH 191
V A K G LH
Sbjct: 68 VHAKDKGGLVPLH 80
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASD----PNTSFLRAARAGHLDKLREL 121
S+ + L AA+AG ++ +++L + + N D +T AA + + L
Sbjct: 6 SEADRQLLEAAKAGDVETVKKL----CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 122 LEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
L+ G D++ + GL LH A GH V + L+K G V+
Sbjct: 62 LQHGADVHAKD------------------KGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 182 STKKGNTALHIAA 194
+ T LH AA
Sbjct: 104 ADLWKFTPLHEAA 116
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
R+LLEA + T KKL +++ ++I+ LH AA +VV+ LL+ G
Sbjct: 12 RQLLEAAKAGDVE--TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 69
Query: 179 VDASTKKGNTALH 191
V A K G LH
Sbjct: 70 VHAKDKGGLVPLH 82
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 97 SNASDPNTSFLRAARAGHLDKLREL------------------LEAGVDINTSNATSKKL 138
S S+ + L AA+AG ++ +++L L N + L
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 139 DNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ ++H K+ GL LH A GH V + L+K G V+ + T LH AA
Sbjct: 65 QHGADVHAKD--KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
R+LLEA + T KKL +++ ++I+ LH AA +VV+ LL+ G
Sbjct: 14 RQLLEAAKAGDVE--TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 71
Query: 179 VDASTKKGNTALH 191
V A K G LH
Sbjct: 72 VHAKDKGGLVPLH 84
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASD----PNTSFLRAARAGHLDKLREL 121
S+ + L AA+AG ++ +++L + + N D +T AA + + L
Sbjct: 10 SEADRQLLEAAKAGDVETVKKL----CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 65
Query: 122 LEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
L+ G D++ + GL LH A GH V + L+K G V+
Sbjct: 66 LQHGADVHAKD------------------KGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 182 STKKGNTALHIAA 194
+ T LH AA
Sbjct: 108 ADLWKFTPLHEAA 120
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 108 RAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTT 167
AA GH LR L+ G +N I + ++ LH A GH +
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNI------------------ITADHVSPLHEACLGGHLS 50
Query: 168 VVKALLKGGCKVDASTKKGNTAL 190
VK LLK G +V+ T +T L
Sbjct: 51 CVKILLKHGAQVNGVTADWHTPL 73
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD + AAR GH++ + L+ G +I+ S T A +++LLE+G
Sbjct: 99 SDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 126 VDINTSNATSKKL 138
D+N L
Sbjct: 158 ADVNQGKGQDSPL 170
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 68 PNTSFLRAARAGHLDKLRELLEA---GVDINTSNASDPN-TSFLRAARAGHLDKLRELLE 123
P RA+ GH L + +A G D+N N N T ++A A L LL+
Sbjct: 199 PGALLFRAS--GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
G ++N +++ G LH A GHT + LK G + A
Sbjct: 257 NGANVNQADSA------------------GRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 184 KKGNTALHIA 193
+G L IA
Sbjct: 299 SEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 68 PNTSFLRAARAGHLDKLRELLEA---GVDINTSNASDPN-TSFLRAARAGHLDKLRELLE 123
P RA+ GH L + +A G D+N N N T ++A A L LL+
Sbjct: 199 PGALLFRAS--GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
G ++N +++ G LH A GHT + LK G + A
Sbjct: 257 NGANVNQADSA------------------GRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 184 KKGNTALHIA 193
+G L IA
Sbjct: 299 SEGRDPLTIA 308
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 108 RAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKN---------NGLNALH 158
R AR L+ L LL+A L +L + Q+ +K G+ ALH
Sbjct: 12 RKARRARLNPLVLLLDAA------------LTGELEVVQQAVKEMNDPSQPNEEGITALH 59
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
A + ++V L+ G V++ G T LH AA
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 68 PNTSFLRAARAGHLDKLRELLEA---GVDINTSNASDPN-TSFLRAARAGHLDKLRELLE 123
P RA+ GH L + +A G D+N N N T ++A A L LL+
Sbjct: 199 PGALLFRAS--GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
G ++N +++ G LH A GHT + LK G + A
Sbjct: 257 NGANVNQADSA------------------GRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 184 KKGNTALHIA 193
+G L IA
Sbjct: 299 SEGRDPLTIA 308
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 41 AVTKLRQEA--KIHNAVIS---LEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDIN 95
AV+ L E +I NAV S L P + PN F + A + + LR + +D+N
Sbjct: 93 AVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLN 152
Query: 96 TSNASD 101
T ++D
Sbjct: 153 TGESTD 158
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 61/201 (30%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTS--------------------------NAS 100
+ N ++A + +D +++LLE G ++N + +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 101 DP-------NTSFLRAARAGHLDKLRELLEAGVDINTSN--------------------- 132
DP T FL AA AG + L+ L G D+N +
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 133 ----ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGN 187
+ L + Q+ ++ G AL AA+ GH V+K LL + G V+A G
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 188 TALHIAALDSLVTDIASSAIT 208
AL A L S +D+ AIT
Sbjct: 184 NALIHALLSSDDSDV--EAIT 202
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 108 RAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTT 167
AA GH LR L+ G +N I + ++ LH A GH +
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNI------------------ITADHVSPLHEACLGGHLS 106
Query: 168 VVKALLKGGCKVDASTKKGNTAL 190
VK LLK G +V+ T +T L
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPL 129
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 25/97 (25%)
Query: 92 VDINTSNASDPN-------TSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI 144
V+ N SDPN T A GHL + LL+ +NT+ +
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-------- 77
Query: 145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
+ LH AAK+GH +VK LL G +A
Sbjct: 78 ----------SPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 148 NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
N+K++ G LH A GH VV+ LL+ V+ + + ++ LH AA
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 157 LHLAAK---DGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LHLA K +V +++ G +DA GNTALH AAL
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+G ALH AA +K LLKG V + G TAL IA
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 41 AVTKLRQEA--KIHNAVIS---LEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDIN 95
AV+ L E +I NAV S L P + PN F + A + + LR + +D+N
Sbjct: 93 AVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLN 152
Query: 96 TSNASD 101
T ++D
Sbjct: 153 TGESAD 158
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 157 LHLAAK---DGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
LHLA K +V +++ G +DA GNTALH AAL
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+G ALH AA +K LLKG V + G TAL IA
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 85 RELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE-AGVDINTSNATSKKLDNQLN 143
+ L++ G DIN N S ++ +L A G + L +L+ A D+N N
Sbjct: 56 KALIDRGADINLQN-SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY--------- 105
Query: 144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK-VDASTKKGNTAL 190
G NAL AA+ GH VK LL+ G + +D G TAL
Sbjct: 106 ---------GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+H+AA+ G T V+ L++ G + G TALH+A
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 61/201 (30%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTS--------------------------NAS 100
+ N ++A + +D +++LLE G ++N + +
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 101 DP-------NTSFLRAARAGHLDKLRELLEAGVDINTSN--------------------- 132
DP T F+ AA AG + L+ L G D+N +
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 133 ----ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGN 187
+ L + Q+ ++ G AL AA+ GH V+K LL + G V+A G
Sbjct: 144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203
Query: 188 TALHIAALDSLVTDIASSAIT 208
AL A L S +D+ AIT
Sbjct: 204 NALIHALLSSDDSDV--EAIT 222
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 26/125 (20%)
Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA 160
D T + AAR + +L+ A DIN ++ N+G ALH A
Sbjct: 117 DGTTPLILAARLAIEGMVEDLITADADINAAD------------------NSGKTALHWA 158
Query: 161 AKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALD-------SLVTDIASSAITDATS- 212
A +T V LL DA K T L +AA + +L+ + A+ ITD
Sbjct: 159 AAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDR 218
Query: 213 LPCSV 217
LP V
Sbjct: 219 LPRDV 223
>pdb|1ZCZ|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
pdb|1ZCZ|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
Length = 464
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 114 HLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL 173
+LD LREL E G +I S+ T+K L K+NG+ A ++ G ++ L+
Sbjct: 26 YLDILRELHEKGWEIWASSGTAKFL-----------KSNGIEANDVSTITGFENLLGGLV 74
Query: 174 K 174
K
Sbjct: 75 K 75
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
KN+ N LH AA T +VK LL G KGNTAL+ A
Sbjct: 57 KNLLENEF-PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV 103
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 18/99 (18%)
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKV 179
L+E G ++ A K + K G ALH AA+ + +VK L+ + G
Sbjct: 257 LVEKGAKVDYDGAARKDSE----------KYKGRTALHYAAQVSNXPIVKYLVGEKGSNK 306
Query: 180 DASTKKGNTALHIAALDS-------LVTDIASSAITDAT 211
D + G T + +AA + L+ AS DAT
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDAT 345
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 85 RELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI 144
+E + AG D+N + D NT A A + L +AG D N + + +Q
Sbjct: 150 KECIAAGADVNAXDC-DENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAA 208
Query: 145 HQ------------------KNIKNNGLNALHLAA-KDGHTTVVKA--LLKGGCKVD--- 180
++ + + NG AL + A +G V A L++ G KVD
Sbjct: 209 NRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDG 268
Query: 181 -----ASTKKGNTALHIAA 194
+ KG TALH AA
Sbjct: 269 AARKDSEKYKGRTALHYAA 287
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 87 LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
LLE G ++N N + T + A++ G + +++LLE G DI+ + T
Sbjct: 120 LLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGADISARDLT 166
>pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory
Protein Gere
pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory
Protein Gere
pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory
Protein Gere
pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory
Protein Gere
pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory
Protein Gere
pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory
Protein Gere
Length = 74
Score = 27.3 bits (59), Expect = 6.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
RE+ E V + T+K++ ++L I +K ++N+ NA+ G + V LL+ G
Sbjct: 17 REVFELLV----QDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
G ALHLAA+ + K LL+ + G T LH A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
G ALHLAA+ + K LL+ + G T LH A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
>pdb|2MTA|H Chain H, Crystal Structure Of A Ternary Electron Transfer Complex
Between Methylamine Dehydrogenase, Amicyanin And A
C-Type Cytochrome
Length = 373
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 40 PAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA 99
PAV + E K ++ + CY + +F R G L K+ E +I +
Sbjct: 147 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 206
Query: 100 SDPNTSFL 107
P FL
Sbjct: 207 FHPEDEFL 214
>pdb|2BBK|H Chain H, Crystal Structure Of The Quinoprotein Methylamine
Dehydrogenase From Paracoccus Denitrificans At 1.75
Angstroms
pdb|2BBK|J Chain J, Crystal Structure Of The Quinoprotein Methylamine
Dehydrogenase From Paracoccus Denitrificans At 1.75
Angstroms
Length = 355
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 40 PAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA 99
PAV + E K ++ + CY + +F R G L K+ E +I +
Sbjct: 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188
Query: 100 SDPNTSFL 107
P FL
Sbjct: 189 FHPEDEFL 196
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
G ALHLAA+ + K LL+ + G T LH A
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 156 ALHLAAKDGHTT---VVKALLKGGCKVDASTKKGNTALHIAAL 195
ALHLA + T +V L++ +D T KG+TALH L
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 214
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGL-------------- 154
AA G ++ +R+LLEAG D N N ++ + + + L
Sbjct: 19 AAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATL 78
Query: 155 -NALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+H AA++G + L + G ++D G + +A
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 95 NTSNASDPNTSFLRAARAGHLDKLRELLEA--GVDINTSNATSKKLDNQLNIHQKNIKNN 152
NT NA P+ +F+RA + D++R+ ++A G N +K + I+ +N N
Sbjct: 381 NTENAVIPSYNFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGXEAYINDQNSTNK 440
Query: 153 GLN 155
N
Sbjct: 441 KWN 443
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
I N G+ LHLA V + L++ G V K LH AA
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|2WU8|A Chain A, Structural Studies Of Phosphoglucose Isomerase From
Mycobacterium Tuberculosis H37rv
Length = 549
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 76 ARAGHLDKLRELLEAGVDINTSN 98
AR HL++ R+ + AGV INTS
Sbjct: 66 ARTAHLEERRDQMFAGVHINTSE 88
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 110 ARAGHLDKLRELLEAGVDINTSN 132
AR HL++ R+ + AGV INTS
Sbjct: 66 ARTAHLEERRDQMFAGVHINTSE 88
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
I N G+ LHLA V + L++ G V K LH AA
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
I N G+ LHLA V + L++ G V K LH AA
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|2GC4|A Chain A, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|E Chain E, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|I Chain I, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|M Chain M, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC7|A Chain A, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|E Chain E, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|I Chain I, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|M Chain M, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2J55|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J55|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J56|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J56|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J57|G Chain G, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|I Chain I, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|3L4M|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex.
pdb|3L4M|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex.
pdb|3L4O|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3L4O|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3ORV|D Chain D, Crystal Structure Of The Y294h-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3ORV|F Chain F, Crystal Structure Of The Y294h-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3PXS|D Chain D, Crystal Structure Of Diferrous Maug In Complex With
Pre-Methylamine Dehydrogenase:
pdb|3PXS|F Chain F, Crystal Structure Of Diferrous Maug In Complex With
Pre-Methylamine Dehydrogenase:
pdb|3PXT|D Chain D, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3PXT|F Chain F, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3RLM|D Chain D, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3RLM|F Chain F, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3RMZ|D Chain D, Crystal Structure Of The W199f-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RMZ|F Chain F, Crystal Structure Of The W199f-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN0|D Chain D, Crystal Structure Of The W199k-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN0|F Chain F, Crystal Structure Of The W199k-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN1|D Chain D, Crystal Structure Of The W199e-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN1|F Chain F, Crystal Structure Of The W199e-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SJL|D Chain D, Crystal Structure Of The P107s-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SJL|F Chain F, Crystal Structure Of The P107s-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SVW|D Chain D, Crystal Structure Of The P107v-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SVW|F Chain F, Crystal Structure Of The P107v-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SWS|D Chain D, Crystal Structure Of The Quinone Form Of Methylamine
Dehydrogenase In Complex With The Diferric Form Of Maug
pdb|3SWS|F Chain F, Crystal Structure Of The Quinone Form Of Methylamine
Dehydrogenase In Complex With The Diferric Form Of Maug
pdb|3SXT|D Chain D, Crystal Structure Of The Quinol Form Of Methylamine
Dehydrogenase In Complex With The Diferrous Form Of Maug
pdb|3SXT|F Chain F, Crystal Structure Of The Quinol Form Of Methylamine
Dehydrogenase In Complex With The Diferrous Form Of Maug
Length = 386
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 40 PAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA 99
PAV + E K ++ + CY + +F R G L K+ E +I +
Sbjct: 160 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219
Query: 100 SDPNTSFL 107
P FL
Sbjct: 220 FHPEDEFL 227
>pdb|3PXW|D Chain D, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3PXW|F Chain F, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3SLE|D Chain D, Crystal Structure Of The P107c-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SLE|F Chain F, Crystal Structure Of The P107c-MaugPRE-Methylamine
Dehydrogenase Complex
Length = 385
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 40 PAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA 99
PAV + E K ++ + CY + +F R G L K+ E +I +
Sbjct: 159 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 218
Query: 100 SDPNTSFL 107
P FL
Sbjct: 219 FHPEDEFL 226
>pdb|1MG2|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
Length = 390
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 40 PAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA 99
PAV + E K ++ + CY + +F R G L K+ E +I +
Sbjct: 164 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 223
Query: 100 SDPNTSFL 107
P FL
Sbjct: 224 FHPEDEFL 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,362,741
Number of Sequences: 62578
Number of extensions: 188312
Number of successful extensions: 1289
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 339
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)