RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10604
(225 letters)
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 95.9 bits (240), Expect = 3e-25
Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 19/126 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
+ S + A G + L +E IN ++ T + AA G + + LL+ G D
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEG-FTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
+AL LA G+T +VK LL G V+ G T
Sbjct: 63 QLLG------------------KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT 104
Query: 189 ALHIAA 194
L A
Sbjct: 105 PLLYAV 110
Score = 73.6 bits (182), Expect = 1e-16
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
++ A G+ D ++ LL+ GVD+N + + T L A H+ ++ LLE+G D
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYD-WNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
++G N++ LA G+ +V + + K+ + K+
Sbjct: 129 TIET------------------DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 55.9 bits (136), Expect = 4e-10
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
++H A G + ++ ++ + ++G T L AA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA 44
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 94.0 bits (235), Expect = 2e-24
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
+ S + A G LD+L+E L G + +N + T + A+ G ++ +R LLE G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERG-FTPLIWASAFGEIETVRFLLEWGAD 61
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
+ +AL LA+ G+T +V LL+ ++ G
Sbjct: 62 PHILA------------------KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 188 TALHIAA 194
T L A
Sbjct: 104 TPLLYAV 110
Score = 92.1 bits (230), Expect = 1e-23
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 19/120 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A+ G ++ +R LLE G D + + ++ A+ G+ D + LLE VDIN +
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILA-KERESALSLASTGGYTDIVGLLLERDVDINIYD-- 99
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
NG L A + H V+ALL G + G T + +A
Sbjct: 100 ----------------WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 79.8 bits (198), Expect = 5e-19
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 19/120 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
++ A+ G+ D + LLE VDIN + + T L A R H+ + LL G D+
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
T ++G + LA G+ V + + K+ S
Sbjct: 129 TTEA------------------DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 90.5 bits (226), Expect = 1e-23
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
S + F+ A + G LD++++ + G D+N + AA G L+ L LL G
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
DIN + + + L A +GH + VK LL G
Sbjct: 64 ADINAPD------------------KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105
Query: 186 GNTALHIAA 194
G TA
Sbjct: 106 GLTAFEATD 114
Score = 59.3 bits (145), Expect = 8e-12
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 19/96 (19%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA G L+ L LL G DIN + T L A GH+ ++ LL G D
Sbjct: 47 AADCGQLEILEFLLLKGADINAPD-KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG-- 103
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVK 170
+GL A +++
Sbjct: 104 ----------------PDGLTAFEATDNQAIKALLQ 123
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 90.0 bits (224), Expect = 3e-22
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
S R E + G+ + + P L ++ G D ++ ++ D
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNP--LPLALLLDSSLEGEFDLVQRIIYEVDDP 63
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
+ N + G+ ALH A GHT +VK L++ G V+A+ G T
Sbjct: 64 SLPN------------------DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
Query: 189 ALHIAA 194
LH AA
Sbjct: 106 PLHCAA 111
Score = 73.0 bits (180), Expect = 6e-16
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 19/143 (13%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
L ++ G D ++ ++ D + N + T+ A AGH + ++ L++ GV++N
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGITALHNAVCAGHTEIVKFLVQFGVNVN 97
Query: 130 TSN---------ATSKK--------LDNQLNIHQKNIK-NNGLNALHLAAKDGHTTVVKA 171
++ A S +++ + ++G+T +
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
L K+ K AL
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDYE 180
Score = 49.5 bits (119), Expect = 1e-07
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
G +L + + G +V L ++L
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSL 46
Score = 48.0 bits (115), Expect = 5e-07
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 25/125 (20%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFL--RAARAGHLDKLRELLEAGVDINTSN 132
AA ++ + L+E+G + SD T+ G+ + L + N
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN--TAL 190
+ AL + +K G + ++
Sbjct: 170 ------------------KGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEW 208
Query: 191 HIAAL 195
A L
Sbjct: 209 WWARL 213
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 86.2 bits (215), Expect = 5e-22
Identities = 52/126 (41%), Positives = 68/126 (53%), Gaps = 19/126 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T AAR GHL+ ++ LLEAG D+N + + T AAR GHL+ ++ LLEAG D+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
N + NG LHLAA++GH VVK LL+ G V+A K G T
Sbjct: 62 NAKD------------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Query: 189 ALHIAA 194
LH+AA
Sbjct: 104 PLHLAA 109
Score = 62.7 bits (154), Expect = 4e-13
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 19/102 (18%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AAR GHL+ ++ LLEAG D+N + + T AAR GHL+ ++ LLEAG D+N +
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-- 98
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
NG LHLAA++GH VVK LL+ G
Sbjct: 99 ----------------KNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 55.8 bits (136), Expect = 2e-10
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
NG LHLAA++GH VVK LL+ G V+A K G T LH+AA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 91.0 bits (227), Expect = 1e-21
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T A+ GHL ++ LL+ G N SN T AARAGH + + LL+ +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
N A L+N N + G LH+AA++GH V A
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT--TAGHTPLHIAAREGHVETVLA 131
Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
LL+ TKKG T LH+AA
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAA 154
Score = 90.6 bits (226), Expect = 2e-21
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T A +LD ++ LL G ++ + T AA+ ++ R LL+ G
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
N + A + L Q N + N +GL LHL A++GH V
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADV 296
Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
L+K G VDA+T+ G T LH+A+
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVAS 319
Score = 87.9 bits (219), Expect = 1e-20
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T AAR GH++ + LLE T AA+ G + LLE N
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 130 TSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
+ A L + H NG LH+AAK V ++L
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSL 231
Query: 173 LKGGCKVDASTKKGNTALHIAA 194
L+ G +A + +G T LH+AA
Sbjct: 232 LQYGGSANAESVQGVTPLHLAA 253
Score = 87.2 bits (217), Expect = 3e-20
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
AA+ ++ R LL+ G N + T AA+ GH + + LL + N N
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQG-VTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Query: 133 -------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
+ + + + + G LH+A+ G+ +VK LL+
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATT--RMGYTPLHVASHYGNIKLVKFLLQHQA 335
Query: 178 KVDASTKKGNTALHIAA 194
V+A TK G + LH AA
Sbjct: 336 DVNAKTKLGYSPLHQAA 352
Score = 86.4 bits (215), Expect = 6e-20
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T AA+ GH + + LL + N N S T A+ GH+ L++ GV +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG-LTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
+ + A+ L +Q +++ K G + LH AA+ GHT +V
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT--KLGYSPLHQAAQQGHTDIVTL 362
Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
LLK G + + G T L IA
Sbjct: 363 LLKNGASPNEVSSDGTTPLAIAK 385
Score = 76.8 bits (190), Expect = 1e-16
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
Query: 91 GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
G+ S T A+ GHL ++ LL+ G N SN
Sbjct: 4 GISGGGGGESG-LTPLHVASFMGHLPIVKNLLQRGASPNVSN------------------ 44
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LH+AA+ GHT V K LL+ KV+A K T LH AA
Sbjct: 45 VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Score = 69.4 bits (171), Expect = 5e-14
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
A+ GH+ L++ GV ++ + T A+ G++ ++ LL+ D+N
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Query: 133 -------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL---LK 174
A + L N + ++ + ++G L +A + G+ +V L
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVS--SDGTTPLAIAKRLGYISVTDVLKVVTD 401
Query: 175 GGCKVDASTKKGNTALHIAAL 195
V S K +
Sbjct: 402 ETSFVLVSDKHRMSFPETVDE 422
Score = 27.1 bits (61), Expect = 5.8
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 75 AARAGHLD---KLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
A R G++ L+ + + + S+ R + + E+L+ D
Sbjct: 384 AKRLGYISVTDVLKVVTDETSFVLVSDKH----------RMSFPETVDEILDVSEDEG 431
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 84.8 bits (211), Expect = 2e-21
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 19/125 (15%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
AA G ++ +R+LLEAG D N N G LL G + N
Sbjct: 14 AGLATAAARGQVETVRQLLEAGADPNALNRFG-RRPIQVMMM-GSAQVAELLLLHGAEPN 71
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
++ +H AA++G + L + G ++D G
Sbjct: 72 CAD-----------------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114
Query: 190 LHIAA 194
+ +A
Sbjct: 115 VDLAE 119
Score = 62.8 bits (154), Expect = 6e-13
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 20/105 (19%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFL-RAARAGHLDKLRELLEAGVDINTS 131
++ G LL G + N ++ T + AAR G LD L L AG ++
Sbjct: 49 IQVMMMGSAQVAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVC 107
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
+ G + LA + GH + + L
Sbjct: 108 D------------------AWGRLPVDLAEEQGHRDIARYLHAAT 134
Score = 58.6 bits (143), Expect = 2e-11
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
IH + L AA G V+ LL+ G +A + G + +
Sbjct: 4 GIHMLG--GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM 53
Score = 43.2 bits (103), Expect = 9e-06
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
AAR G LD L L AG ++ + + A GH D R L A D
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVCD-AWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 27.4 bits (62), Expect = 2.2
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 175 GGCKVDASTKKGNTALHIAA 194
G + + L AA
Sbjct: 1 GSPGIHMLGGSSDAGLATAA 20
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 85.9 bits (214), Expect = 3e-21
Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + + T AA GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAED-ASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + + G+ L LAA GH +V+ LLK G V+A+ +
Sbjct: 71 ADVNAVD------------------HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112
Query: 186 GNTALHIAA 194
G+T LH+AA
Sbjct: 113 GHTPLHLAA 121
Score = 80.5 bits (200), Expect = 3e-19
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 91 GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
G + + SD L AARAG D++R L+ G D+N +
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAED------------------ 44
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+G LHLAA +GH +V+ LLK G V+A G T L +AA
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88
Score = 55.1 bits (134), Expect = 8e-10
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T AA GHL+ + LL+ G D+N ++ + +T AA GHL+ + LL+ G D+
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK 174
N + G A ++ +G+ + + L K
Sbjct: 140 NAQD------------------KFGKTAFDISIDNGNEDLAEILQK 167
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 84.5 bits (210), Expect = 5e-21
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
AA G ++++R LLEAG + N N+ G LL G
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYG-RRPIQVMMM-GSARVAELLLLHGA 68
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
+ N ++ +H AA++G + L + G ++D G
Sbjct: 69 EPNCAD-----------------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Query: 187 NTALHIAA 194
+ +A
Sbjct: 112 RLPVDLAE 119
Score = 71.7 bits (177), Expect = 4e-16
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
++ G LL G + N ++ + AAR G LD L L AG ++ +
Sbjct: 49 IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
G + LA + GH V + L S A
Sbjct: 109 ------------------AWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 70.2 bits (173), Expect = 2e-15
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 88 LEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQK 147
+E + ++D AA G ++++R LLEAG + N N
Sbjct: 1 MEPAAGSSMEPSADW---LATAAARGRVEEVRALLEAGANPNAPN--------------- 42
Query: 148 NIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT-ALHIAA 194
+ G + + G V + LL G + + + T +H AA
Sbjct: 43 ---SYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAA 86
Score = 53.2 bits (129), Expect = 3e-09
Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 24/95 (25%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AAR G LD L L AG ++ +A A GH D R L A
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWG-RLPVDLAEELGHRDVARYLRAAAGGTR----- 138
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVV 169
G N + A +G + +
Sbjct: 139 ------------------GSNHARIDAAEGPSDIP 155
Score = 32.8 bits (76), Expect = 0.032
Identities = 12/48 (25%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLD 116
A GH D R L A SN + A G D
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR------IDAAEGPSD 153
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 86.8 bits (216), Expect = 1e-20
Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
N ++A + +D +++LLE G ++N T A + D + LL G D
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
NG LAA G ++K L G V+ G T
Sbjct: 66 VLRK------------------KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107
Query: 189 ALHIAA 194
A AA
Sbjct: 108 AFMEAA 113
Score = 81.4 bits (202), Expect = 9e-19
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T FL AA AG + L+ L G D+N + T+F+ AA G + L+ L + G ++
Sbjct: 73 ATPFLLAAIAGSVKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGN 187
N T + + + G AL AA+ GH V+K LL + G V+A G
Sbjct: 132 NLRRKTKEDQERL--------RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 188 TALHIAAL 195
AL A L
Sbjct: 184 NALIHALL 191
Score = 74.8 bits (185), Expect = 2e-16
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 34/158 (21%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN---------TSFLRAARAGHLDKLR 119
T+F+ AA G + L+ L + G ++N + + T+ + AA GH++ L+
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 120 ELL-EAGVDINTSN----------ATSKKLDNQL-----------NIHQKNIKNNGLNAL 157
LL E G D+N + S + +++ + G L
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG--ERGKTPL 223
Query: 158 HLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
LA + H +V+ LL + +++ + G TAL +A
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
Score = 67.5 bits (166), Expect = 9e-14
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
Query: 99 ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
A + N ++A + +D +++LLE G ++N + G LH
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----------------EEGGWTPLH 44
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
A + +V+ LL+ G K G T +AA
Sbjct: 45 NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80
Score = 56.7 bits (138), Expect = 5e-10
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 24/118 (20%)
Query: 69 NTSFLRAARAGHLDKLRE----LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE- 123
+ + A + + LL+ G D+N T + A HL ++ LLE
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-ERGKTPLILAVEKKHLGLVQRLLEQ 241
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
++IN ++ ++G AL LA + + + L K G D
Sbjct: 242 EHIEINDTD------------------SDGKTALLLAVELKLKKIAELLCKRGASTDC 281
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 83.6 bits (208), Expect = 1e-20
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 21/127 (16%)
Query: 69 NTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
AA G + ++R LL V + N T+ L+ G ELL+ G
Sbjct: 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFG-KTA-LQVMMFGSTAIALELLKQGAS 60
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
N + +G + +H AA+ G +K L++ G V+ G
Sbjct: 61 PNVQD------------------TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA 102
Query: 188 TALHIAA 194
+H+A
Sbjct: 103 LPIHLAV 109
Score = 79.8 bits (198), Expect = 4e-19
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 20/122 (16%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
L+ G ELL+ G N + + + AAR G LD L+ L+E G D+N +
Sbjct: 40 LQVMMFGSTAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
G +HLA ++GHT VV L + +G T L +
Sbjct: 99 ------------------GTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLEL 139
Query: 193 AA 194
A
Sbjct: 140 AL 141
Score = 48.9 bits (118), Expect = 1e-07
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 153 GLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAALDSL 198
+ L AA G V+ LL + DA + G TAL + S
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 85.6 bits (213), Expect = 2e-20
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
AA GH LR L+ G +N +D + A GHL ++ LL+ G +N
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 68
Query: 133 -------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
A L + ++ +++ + +H AA+ GH V +L+ G
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASV---QPESDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 178 KVDASTKKGNTALHIAA 194
+D T L++A
Sbjct: 126 NIDHKISHLGTPLYLAC 142
Score = 83.3 bits (207), Expect = 1e-19
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AAR GH++ + L+ G +I+ S T A +++LLE+G D+N
Sbjct: 108 AARRGHVECVNSLIAYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESGADVNQ---- 162
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ LH A+ + L+ G A +G + +
Sbjct: 163 ---------------GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVP 207
Score = 62.8 bits (154), Expect = 4e-12
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T A +++LLE+G D+N ++ AR + L++ G D
Sbjct: 136 TPLYLACENQQRACVKKLLESGADVNQGK--GQDSPLHAVARTASEELACLLMDFGADTQ 193
Query: 130 TSN---------ATSKK------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK 174
N + L+ + L H + K +L
Sbjct: 194 AKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQ--LCRLRIRKCFGIQQHHKITKLVLP 251
Query: 175 GGCK 178
K
Sbjct: 252 EDLK 255
Score = 55.9 bits (136), Expect = 9e-10
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
+ + +H AA GH ++ L+ G V+ T + LH A L
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 45
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 85.2 bits (212), Expect = 2e-20
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
++A + G ++ REL+EAG D+ + + T AA +D ++ + G +
Sbjct: 10 TWDIVKATQYGIYERCRELVEAGYDVRQPD-KENVTLLHWAAINNRIDLVKYYISKGAIV 68
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
+ + LH A + GH ++V L+K G +G +
Sbjct: 69 DQLG-----------------GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 189 ALHIAA 194
+H+AA
Sbjct: 112 CIHLAA 117
Score = 82.9 bits (206), Expect = 1e-19
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
A R GHL + +L++ G D + + + + AA+ GH + L+ G D++ +
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN 141
Query: 133 -------ATSKK---------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
A + L ++++ + K + ALH A G+TTV+ LL+ G
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLAGNTTVISLLLEAG 200
Query: 177 CKVDASTKKGNTALHIAA 194
VDA KG +AL +A
Sbjct: 201 ANVDAQNIKGESALDLAK 218
Score = 82.9 bits (206), Expect = 2e-19
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T AA +D ++ + G ++ +T A R GHL + +L++ G D +
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
+ G + +HLAA+ GHT++V L+ G VD + G T
Sbjct: 104 LID------------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 190 LHIAALDSLVTDIA 203
L AA + D
Sbjct: 146 LMWAAYRTHSVDPT 159
Score = 64.4 bits (158), Expect = 8e-13
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 94 INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNG 153
+ + ++A + G ++ REL+EAG D+ +
Sbjct: 2 MTHID-DYSTWDIVKATQYGIYERCRELVEAGYDVRQPD------------------KEN 42
Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKK-GNTALHIAA 194
+ LH AA + +VK + G VD +T LH A
Sbjct: 43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84
Score = 61.7 bits (151), Expect = 8e-12
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 69 NTSFLRAARAGH-LDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
T + AA H +D R LL V +N + NT+ A AG+ + LLEAG +
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
++ N G +AL LA + + ++ L +
Sbjct: 203 VDAQN------------------IKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 58.2 bits (142), Expect = 2e-10
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
++ + + + A + G + L++ G V K+ T LH AA
Sbjct: 1 HMTHID--DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA 50
Score = 40.9 bits (97), Expect = 1e-04
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
NT+ A AG+ + LLEAG +++ N ++ A + ++ + L EA
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKG-ESALDLAKQRKNVWMINHLQEARQAK 236
Query: 129 NTSN 132
N
Sbjct: 237 GYDN 240
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 86.4 bits (215), Expect = 3e-20
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 69 NTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
L AAR+G+ +KL LL V+ + S+ +T AA + ++ LL+ G D
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRK-STPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
++ + GL LH A GH V + LLK G V+A
Sbjct: 84 VHAKD------------------KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125
Query: 188 TALHIAA 194
T LH AA
Sbjct: 126 TPLHEAA 132
Score = 83.3 bits (207), Expect = 4e-19
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 20/111 (18%)
Query: 85 RELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNATSKKLDNQLN 143
+L + + L AAR+G+ +KL LL V+ + S+
Sbjct: 8 LDLADPSAKAVLTGEYK-KDELLEAARSGNEEKLMALLTPLNVNCHASD----------- 55
Query: 144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
LHLAA +V+ LL+ G V A K G LH A
Sbjct: 56 -------GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99
Score = 77.1 bits (191), Expect = 7e-17
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 22/129 (17%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKL---RELLEAG 125
S L+AAR L K+++ L + S T+ A + H + LL G
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSH-ETALHCAVASLHPKRKQVAELLLRKG 237
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
++N N + + LH+AA+ H V++ L K G K++A
Sbjct: 238 ANVNEKN------------------KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL 279
Query: 186 GNTALHIAA 194
G TALH AA
Sbjct: 280 GQTALHRAA 288
Score = 72.9 bits (180), Expect = 2e-15
Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 7/132 (5%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T AA ++ LL G D N ++ A ++L + +
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVN-CHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 129 NTS-NATSKKLDNQLNIHQKNI--KNNGLNALHLAAKDGHTT---VVKALLKGGCKVDAS 182
+ A K+ L + N + ALH A H V + LL+ G V+
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243
Query: 183 TKKGNTALHIAA 194
K T LH+AA
Sbjct: 244 NKDFMTPLHVAA 255
Score = 67.5 bits (166), Expect = 1e-13
Identities = 25/141 (17%), Positives = 37/141 (26%), Gaps = 40/141 (28%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A GH + LL+ G +N + T AA ++ LL G D N
Sbjct: 98 ACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN-- 154
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC----------------- 177
+G +A+ +A + KG
Sbjct: 155 ----------------CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198
Query: 178 ----KVDASTKKGNTALHIAA 194
+ TALH A
Sbjct: 199 ALEIINFKQPQSHETALHCAV 219
Score = 32.9 bits (76), Expect = 0.072
Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 26/96 (27%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T+ RAA AGHL R LL G D + + T+ A +L +
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGSDPSIIS-LQGFTAAQMGNEAVQQ-----ILSESTPM 334
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDG 164
TS+ + L A+K G
Sbjct: 335 RTSD------------------VDY--RLLEASKAG 350
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 85.2 bits (212), Expect = 4e-20
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 20/120 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
G L + D FL A +G +++ LLE G DIN +N
Sbjct: 15 KRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLERGADINYAN-- 70
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+GL ALH A D + +VK L++ G ++ +G LH AA
Sbjct: 71 ----------------VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114
Score = 82.9 bits (206), Expect = 3e-19
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D FL A +G +++ LLE G DIN +N D T+ +A ++D ++ L+E G
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
+IN + N G LH AA G+ + + L+ G V A +G
Sbjct: 98 NINQPD------------------NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139
Query: 187 NTALHIAA 194
+T L IA
Sbjct: 140 DTPLDIAE 147
Score = 74.5 bits (184), Expect = 4e-16
Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 19/130 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D + R D + L ++ T+ AA G+ + L+ L++A
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHA-KSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
D+N + +G LH AA G + L++ C ++A K G
Sbjct: 224 DVNIKD------------------YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265
Query: 187 NTALHIAALD 196
TA +A D
Sbjct: 266 QTAFDVADED 275
Score = 68.7 bits (169), Expect = 5e-14
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
A ++D ++ L+E G +IN + ++ AA G+LD L+ G + N
Sbjct: 80 ACIDDNVDMVKFLVENGANINQPD-NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138
Query: 133 -------ATSKKLDNQLNIHQKNIKNNGLN---ALHLAAKDGHTTVVKALLKGGCKVDAS 182
A + + Q + G++ A + + L G
Sbjct: 139 GDTPLDIAEEE---AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195
Query: 183 TKKGNTALHIAA 194
K G TALH+AA
Sbjct: 196 AKSGGTALHVAA 207
Score = 59.8 bits (146), Expect = 6e-11
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 19/88 (21%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
G L + +K + A G T
Sbjct: 15 KRWIGSETDLEPPVVKRKKTK-------------------VKFDDGAVFLAACSSGDTEE 55
Query: 169 VKALLKGGCKVDASTKKGNTALHIAALD 196
V LL+ G ++ + G TALH A +D
Sbjct: 56 VLRLLERGADINYANVDGLTALHQACID 83
Score = 50.2 bits (121), Expect = 1e-07
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA G+ + L+ L++A D+N + D T AA G + R L+E D+ N
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKD-YDGWTPLHAAAHWGKEEACRILVENLCDMEAVN-- 262
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
G A +A +D + + K +K +
Sbjct: 263 ----------------KVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKKS 299
Score = 40.9 bits (97), Expect = 1e-04
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 148 NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ + L G T ++ + K G L +
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACS 49
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 81.3 bits (202), Expect = 5e-20
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A+ G + + LL+ G D N + + T A GHL + LL+ +NT+
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAG-WTPLHEACNHGHLKVVELLLQHKALVNTTG-- 73
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ LH AAK+GH +VK LL G +A G +
Sbjct: 74 ----------------YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Score = 72.8 bits (180), Expect = 1e-16
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 91 GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
G+D T++ T A+ G + + LL+ G D N +
Sbjct: 1 GIDPFTNH--RGETLLHIASIKGDIPSVEYLLQNGSDPNVKD------------------ 40
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ G LH A GH VV+ LL+ V+ + + ++ LH AA
Sbjct: 41 HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 84.1 bits (209), Expect = 9e-20
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
AA GH LR L+ G +N +D + A GHL ++ LL+ G +N
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 124
Query: 133 -------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
A L + ++ +++ + +H AA+ GH V +L+ G
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASV---QPESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 178 KVDASTKKGNTALHIAA 194
+D T L++A
Sbjct: 182 NIDHKISHLGTPLYLAC 198
Score = 82.9 bits (206), Expect = 3e-19
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 20/123 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AAR GH++ + L+ G +I+ S T A +++LLE+G D+N
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESGADVNQ---- 218
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ LH + + L+ G A +G + +
Sbjct: 219 ---------------GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263
Query: 195 LDS 197
+S
Sbjct: 264 PES 266
Score = 75.6 bits (187), Expect = 1e-16
Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 48/150 (32%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPN------------------------------T 104
+ H L+ G + + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 105 SFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDG 164
AA GH LR L+ G +N + ++ LH A G
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIIT------------------ADHVSPLHEACLGG 103
Query: 165 HTTVVKALLKGGCKVDASTKKGNTALHIAA 194
H + VK LLK G +V+ T +T L A
Sbjct: 104 HLSCVKILLKHGAQVNGVTADWHTPLFNAC 133
Score = 71.8 bits (177), Expect = 4e-15
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLD-----------NQLNIHQKNIKN--NGLN 155
+ H L+ G + + + +D + + + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 156 ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
+H AA GH ++ L+ G V+ T + LH A L
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101
Score = 35.2 bits (82), Expect = 0.012
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 5/42 (11%)
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKK-----GNTALHIAAL 195
+ + H L+ G + + K G+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF 42
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 80.1 bits (199), Expect = 2e-19
Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
D L AARAG D++R L+ G T + AA+ GH LL AGV
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
+ LH+AA +GH +V+ LLK G V+A
Sbjct: 59 SRDART------------------KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100
Query: 187 NTALHIAA 194
TALH A
Sbjct: 101 MTALHWAT 108
Score = 48.5 bits (117), Expect = 1e-07
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA GH + + LL+ G D+N + T+ A H + + L++ G D++T +
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELLIKYGADVHTQS-- 130
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
A ++ +G+ + + L
Sbjct: 131 ----------------KFCKTAFDISIDNGNEDLAEIL 152
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 80.6 bits (200), Expect = 3e-19
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 23/142 (16%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
+L + GH D+ + T + AAR L +LLE D++
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQLLE-DRDVD 70
Query: 130 TSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
+ + ++ ++ GL ALH+AA VV+AL
Sbjct: 71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAGYVRPEVVEAL 129
Query: 173 LKGGCKVDASTKKGNTALHIAA 194
++ G ++ ++G TAL +A
Sbjct: 130 VELGADIEVEDERGLTALELAR 151
Score = 66.4 bits (163), Expect = 8e-14
Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 22/106 (20%)
Query: 89 EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKN 148
E I + A + +L + GH D+ + T
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET-------------- 46
Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
AA+ + LL+ VDA + G TAL A
Sbjct: 47 -------PWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA 84
Score = 64.1 bits (157), Expect = 4e-13
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A G +R L EAG D++ + T+ AA + + L+E G DI +
Sbjct: 83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED-- 140
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
GL AL LA + TT ++ G ++
Sbjct: 141 ----------------ERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 38.6 bits (91), Expect = 4e-04
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T+ AA + + L+E G DI + T+ A ++ G I
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPMQFGRRIG 170
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 83.8 bits (208), Expect = 3e-19
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
N+ A D +E G+D+N + ++ + RA + +ELL+
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNMED-NEHTVPLYLSVRAAMVLLTKELLQKTDVF 270
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
N + L+ + AA V++ L + +V S G
Sbjct: 271 LIQAC---PYHNGTTVLPDR--VVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAG 325
Query: 189 ALHIAA 194
Sbjct: 326 GAVKRK 331
Score = 78.4 bits (194), Expect = 3e-17
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 12/133 (9%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T+ A + G +D + L G + A A D + L+E +
Sbjct: 54 CTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKER 110
Query: 129 NTS---NATSK--KLDNQLNIHQKNIKNNGLNALHLAAKDG--HTTVVKALLKGGCKVDA 181
+ N++ H K+ G ALH G + ++K L++ G A
Sbjct: 111 GQMPESLLNECDEREVNEIGSHVKH--CKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168
Query: 182 STKKGNTALHIAA 194
K T L A
Sbjct: 169 KDKADETPLMRAM 181
Score = 73.7 bits (182), Expect = 1e-15
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 16/128 (12%)
Query: 69 NTSFLRAARAG--HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
T+ G +L+ ++ L++ G + +D T +RA + + L +++
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD-ETPLMRAMEFRNREALDLMMDTVP 197
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
+ L + N G + LH A V ++ G V+ +
Sbjct: 198 S-----------KSSLRLDYAN--KQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH 244
Query: 187 NTALHIAA 194
L+++
Sbjct: 245 TVPLYLSV 252
Score = 73.7 bits (182), Expect = 1e-15
Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 30/137 (21%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN------------TSFLRAARAGHLD 116
+ RA + +ELL+ N AA +
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304
Query: 117 KLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
L+ L E ++ S N G K V + L
Sbjct: 305 VLQLLQEKLDEVVRSL------------------NTGAGGAVKRKKKAAPAVKRMKLAPS 346
Query: 177 CKVDASTKKGNTALHIA 193
V ++ + ++
Sbjct: 347 APVRTRSRSRARSSAVS 363
Score = 71.1 bits (175), Expect = 1e-14
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 27/120 (22%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AAR G D++R L+E GV N T+ A + G +D + L G +
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACKFGCVDTAKYLASVGEVHSL---- 81
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+G +HLA T +V AL++G ++G +
Sbjct: 82 ----------------WHGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLN 119
Score = 63.7 bits (156), Expect = 3e-12
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 37/144 (25%)
Query: 69 NTSFLRAARAGHLDKLRELLE-----AGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
T +RA + + L +++ + + ++ +N N+ A D +E
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG-NSHLHWAILINWEDVAMRFVE 232
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL---------- 173
G+D+N + N L+L+ + + K LL
Sbjct: 233 MGIDVNMED------------------NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274
Query: 174 ---KGGCKVDASTKKGNTALHIAA 194
G V + AA
Sbjct: 275 CPYHNGTTVLPDRVVWLDFVPAAA 298
Score = 63.7 bits (156), Expect = 4e-12
Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 21/105 (20%)
Query: 90 AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNI 149
++ S+ + AAR G D++R L+E GV N
Sbjct: 9 PKLNRIKSD-DENMEKIHVAARKGQTDEVRRLIETGVSPTIQN----------------- 50
Query: 150 KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G ALHLA K G K L G G +H+A
Sbjct: 51 -RFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAV 92
Score = 27.1 bits (61), Expect = 4.7
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 174 KGGCKVDASTKKGNTALHIAA 194
S + +H+AA
Sbjct: 8 FPKLNRIKSDDENMEKIHVAA 28
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 81.1 bits (201), Expect = 4e-19
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 20/146 (13%)
Query: 50 KIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRA 109
K +I + + AA+ G+L LRE L+ V +N + +T+ A
Sbjct: 55 KGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWA 113
Query: 110 ARAGHLDKLRELL-EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
GH D + L + +++N N G ALH AA G+ +
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQN------------------KLGDTALHAAAWKGYADI 155
Query: 169 VKALLKGGCKVDASTKKGNTALHIAA 194
V+ LL G + D + A +A
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDMAT 181
Score = 74.2 bits (183), Expect = 2e-16
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 24/126 (19%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
RA EL DI +T++ + G
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTG------------ 59
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
L + ++ + N LH AAK G+ + ++ L V+ K G+T
Sbjct: 60 ---------LIPSNYVAEQA--ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGST 108
Query: 189 ALHIAA 194
AL+ A
Sbjct: 109 ALYWAC 114
Score = 46.1 bits (110), Expect = 2e-06
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 19/91 (20%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA G+ D ++ LL G + N + +F A A L++ SN
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRN-IEKKLAFDMATNAACASLLKKKQGTDAVRTLSN-- 203
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGH 165
+ + H
Sbjct: 204 ----------------AEDYLDDEDSDLEHH 218
Score = 44.5 bits (106), Expect = 6e-06
Identities = 5/44 (11%), Positives = 8/44 (18%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G + A L + T +T
Sbjct: 10 KPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT 53
Score = 33.0 bits (76), Expect = 0.053
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLD 116
+F A A L++ SNA D + H
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAED-YLDDEDSDLEHHHH 220
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 81.3 bits (202), Expect = 5e-19
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T+ A + ++ LLE G DI+ + + + A L ++ LL+ G ++N
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
+G +ALH A+ G +V+ L++ G +T
Sbjct: 178 AQM------------------YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
Query: 190 LHIAA 194
L +A
Sbjct: 220 LMVAR 224
Score = 73.6 bits (182), Expect = 3e-16
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 75 AARAGHLDKLRELLEAG----VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
A LR LL++ +D+ N D T+ A + ++ LLE G DI+
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEARN-YDGLTALHVAVNTECQETVQLLLERGADIDA 144
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
+ +G + L A ++ ++V+ LL+ G V+A G++AL
Sbjct: 145 VD-----------------IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
Query: 191 HIAA 194
H A+
Sbjct: 188 HSAS 191
Score = 70.2 bits (173), Expect = 6e-15
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 16/126 (12%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T A +R L+ AG + T+ A LR LL++
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALD-RHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAS-TKKGNT 188
++ +N +GL ALH+A V+ LL+ G +DA K G +
Sbjct: 107 L------------DLEARN--YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS 152
Query: 189 ALHIAA 194
L A
Sbjct: 153 PLIHAV 158
Score = 69.4 bits (171), Expect = 1e-14
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 27/128 (21%)
Query: 75 AARAGHLDKLRELLE----AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
A G+L + L+ G +++ N + T A +R L+ AG
Sbjct: 16 AVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMA 74
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK----VDASTKKG 186
+ +G A HLA + T ++ALL ++A G
Sbjct: 75 LD------------------RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116
Query: 187 NTALHIAA 194
TALH+A
Sbjct: 117 LTALHVAV 124
Score = 49.4 bits (119), Expect = 2e-07
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 151 NNGLNALHLAAKDGHTTVVKALL----KGGCKVDASTKKGNTALHIAA 194
+G LH+A G+ V L+ +GG ++D T LH+A
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 54
Score = 26.3 bits (59), Expect = 8.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 179 VDASTKKGNTALHIAA 194
+ + G+T LHIA
Sbjct: 2 ATRADEDGDTPLHIAV 17
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 83.1 bits (205), Expect = 7e-19
Identities = 30/133 (22%), Positives = 42/133 (31%), Gaps = 22/133 (16%)
Query: 67 DPNTSFLRAARAGH---LDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
AA G LD L LL + + A + +F AA GHL L L E
Sbjct: 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN-YQAFRLAAENGHLHVLNRLCE 149
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
I+ +A LAA++GH V+ L + +
Sbjct: 150 LAPTEI----------------MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193
Query: 184 --KKGNTALHIAA 194
+ A AA
Sbjct: 194 IQAENYYAFRWAA 206
Score = 71.1 bits (174), Expect = 9e-15
Identities = 30/170 (17%), Positives = 46/170 (27%), Gaps = 38/170 (22%)
Query: 63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN-TSFLRAA-RAGHLDKLRE 120
++ +F AA GHL L L E T+ N +F AA GH + +
Sbjct: 158 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 217
Query: 121 LLEAGVDINTSNATSKKLD----NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA----- 171
LL+ V + + + N N +A L+ DG +V
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277
Query: 172 ---------------------------LLKGGCKVDASTKKGNTALHIAA 194
+K N L +A
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 327
Score = 71.1 bits (174), Expect = 1e-14
Identities = 28/137 (20%), Positives = 38/137 (27%), Gaps = 18/137 (13%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNAS-DPNTSFLRAARAGHLDKLRELLEAGVD 127
+F AA GHL L L E + + +F AA GHL L L E
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA-KDGHTTVVKALLKGGCKVDASTKKG 186
T I+ A AA GH V+ LL + +
Sbjct: 189 EAT----------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 232
Query: 187 NTALHIAALDSLVTDIA 203
+ +
Sbjct: 233 FEYGEKYVNPFIARHVN 249
Score = 68.8 bits (168), Expect = 6e-14
Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 21/182 (11%)
Query: 15 LEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLR 74
+E E + + + +N+ + +L + I + + L
Sbjct: 9 IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 68
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A + ++L + + LD L LL + +
Sbjct: 69 LYYAHYNRNAKQLWSDAHKKGIKS-EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-- 125
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK--KGNTALHI 192
A LAA++GH V+ L + + + A +
Sbjct: 126 ----------------AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169
Query: 193 AA 194
AA
Sbjct: 170 AA 171
Score = 46.9 bits (111), Expect = 2e-06
Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 44/178 (24%)
Query: 63 DCYSDPNTSFLRAA-RAGHLDKLRELLEAGVDINTSNA---------------------S 100
++ +F AA GH + + LL+ V + +
Sbjct: 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252
Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL-----NIHQKNIK----- 150
+ + +F + G D + + N + + L + IK
Sbjct: 253 EMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 312
Query: 151 ----NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK--------KGNTALHIAALD 196
+ L LA + G+ LL + + G L AL+
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALE 370
Score = 39.2 bits (91), Expect = 7e-04
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 28/132 (21%)
Query: 50 KIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLREL-----LEAGVDINTSNASDPNT 104
+++ C + + +R LD +R L ++A T D N
Sbjct: 264 DGVFDLVTKSECLQGFY-MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP-GDANE 321
Query: 105 SFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDG 164
A R G+ LL + + A N ++ G
Sbjct: 322 LLRLALRLGNQGACALLLSIPSVLALTKA---------------------NNYYINETGG 360
Query: 165 HTTVVKALLKGG 176
+ L+
Sbjct: 361 RLDLRAVALEHH 372
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 77.6 bits (192), Expect = 9e-19
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
+ H L+ G + SD L AARAG D++R L+ G D+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMANGADVAAKD-- 54
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
NG LHLAA++GH VVK LL+ G V A K G TA I+
Sbjct: 55 ----------------KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98
Score = 51.4 bits (124), Expect = 5e-09
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+ + + +T AAR GHL+ ++ LLEAG
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
D+ + G A ++ +G+ + + L
Sbjct: 81 ADVXAQD------------------KFGKTAFDISIDNGNEDLAEIL 109
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 78.2 bits (194), Expect = 1e-18
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
AA G L++L LL+ V++N N T+ L+ + G+ + R LL G +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTA-LQVMKLGNPEIARRLLLRGANP 63
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
+ + G +H AA+ G ++ LL+ V+ +GN
Sbjct: 64 DLKD------------------RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 189 ALHIAA 194
LH+AA
Sbjct: 106 PLHLAA 111
Score = 55.1 bits (134), Expect = 7e-10
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSL 198
+ N L AA G + +LL+ V+A G TAL + L +
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 50
Score = 53.9 bits (131), Expect = 1e-09
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 21/122 (17%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
L+ + G+ + R LL G + + + AARAG LD L+ LLE D+N +
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
Query: 133 ----------ATSKKLD--------NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK 174
A L N+ +N + G A LA G VV +
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN--HKGDTACDLARLYGRNEVVSLMQA 158
Query: 175 GG 176
G
Sbjct: 159 NG 160
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 79.0 bits (196), Expect = 2e-18
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
A + L + ++ + ++ NT A ++ + L++ G DI
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGN 187
N N + + A G T ++ +L ++ + G
Sbjct: 66 NLQN------------------SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG 107
Query: 188 TALHIAA 194
AL AA
Sbjct: 108 NALIPAA 114
Score = 76.7 bits (190), Expect = 2e-17
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VD 127
NT A ++ + L++ G DIN N S ++ +L A G + L +L+ D
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGADINLQN-SISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKG 186
+N N G NAL AA+ GH VK LL G +D G
Sbjct: 99 LNKHN------------------RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG 140
Query: 187 NTALHIAAL 195
TAL A
Sbjct: 141 YTALIEAVG 149
Score = 55.1 bits (134), Expect = 1e-09
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 149 IKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+K L A + V + L +VD +GNT L+IA
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV 47
Score = 53.6 bits (130), Expect = 4e-09
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 69 NTSFLRAARAGHLDKLRELLEAG-VDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-V 126
++ +L A G + L +L+ D+N N + + AA GH+D ++ LLE G
Sbjct: 73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHN-RYGGNALIPAAEKGHIDNVKLLLEDGRE 131
Query: 127 DINTSNATSK-------KLDNQLNIHQ------------KNIKNN-GLNALHLAAKDGHT 166
DI+ N L ++Q ++IK+N G A+ A + G+T
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 167 TVVKALLK 174
+ K L +
Sbjct: 192 EISKILAQ 199
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 80.7 bits (200), Expect = 2e-18
Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 18/120 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A + +R L +AG D+N + T A A L LL+AG D
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM-- 222
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G L A + + + L G + +
Sbjct: 223 ----------------YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266
Score = 77.2 bits (191), Expect = 3e-17
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 19/130 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
+ ++ ++ + + + N D +T A + +R L +AG
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N G LHLA + +V++ LLK G A
Sbjct: 182 ADLNKPE-----------------PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 186 GNTALHIAAL 195
G T L A L
Sbjct: 225 GRTPLGSALL 234
Score = 74.1 bits (183), Expect = 5e-16
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 5/120 (4%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA G + +L AG + + +T+ A R LL+ +
Sbjct: 52 AAILGEASTVEKLYAAGAGVLVAE-RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ + A + + +++A G+T LH+A
Sbjct: 111 T----YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166
Score = 65.3 bits (160), Expect = 7e-13
Identities = 21/122 (17%), Positives = 30/122 (24%), Gaps = 20/122 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLEAGVDINTSN 132
A H L LL + + T+ AA G + +L AG + +
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
G ALHLA + T LL+
Sbjct: 76 ------------------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117
Query: 193 AA 194
Sbjct: 118 DC 119
Score = 52.5 bits (127), Expect = 1e-08
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGG---CKVDASTKKGNTALHIAA 194
+G ALHLA H + LL +D G TALH+AA
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 79.6 bits (197), Expect = 3e-18
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 23/142 (16%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
+L + GH D+ + T + AAR L +LLE D++
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQLLE-DRDVD 71
Query: 130 TSNAT------------SKK-----LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
+ S K + ++ ++ GL ALH+AA VV+AL
Sbjct: 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAGYVRPEVVEAL 130
Query: 173 LKGGCKVDASTKKGNTALHIAA 194
++ G ++ ++G TAL +A
Sbjct: 131 VELGADIEVEDERGLTALELAR 152
Score = 68.4 bits (168), Expect = 4e-14
Identities = 20/134 (14%), Positives = 36/134 (26%), Gaps = 7/134 (5%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T+ AA + + L+E G DI + T+ A ++ G I
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPMQFGRRIG 171
Query: 130 TSNATSKKLDNQLNIHQK---NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
+ + K G + +L + A K
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA--KD 229
Query: 186 GNTALHIAALDSLV 199
L A +S++
Sbjct: 230 YEDGLEYAVAESVI 243
Score = 67.6 bits (166), Expect = 6e-14
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 21/121 (17%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A G +R L EAG D++ + T+ AA + + L+E G DI +
Sbjct: 84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED-- 141
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
GL AL LA + TT ++ G ++ + +
Sbjct: 142 ----------------ERGLTALELAREILKTTPKGNPMQFGRRIGL---EKVINVLEGQ 182
Query: 195 L 195
+
Sbjct: 183 V 183
Score = 62.6 bits (153), Expect = 4e-12
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 22/101 (21%)
Query: 94 INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNG 153
I + A + +L + GH D+ + T
Sbjct: 7 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET------------------- 47
Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
AA+ + LL+ VDA + G TAL A
Sbjct: 48 --PWWTAARKADEQALSQLLEDRD-VDAVDENGRTALLFVA 85
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 78.2 bits (194), Expect = 3e-18
Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAG-VDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
+ R G+ +R L+ D+N + + A R G + L+ G
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG-FSPLHWACREGRSAVVEMLIMRG 62
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
IN N LHLAA GH +V+ LL+ ++A +
Sbjct: 63 ARINVMN------------------RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH 104
Query: 186 GNTALHIAA 194
GN LH A
Sbjct: 105 GNVPLHYAC 113
Score = 77.1 bits (191), Expect = 7e-18
Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 19/120 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A R G + L+ G IN N D +T AA GH D +++LL+ DIN N
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQYKADINAVN-- 102
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+G LH A G V + L+ G V K G + A
Sbjct: 103 ----------------EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 60.9 bits (149), Expect = 6e-12
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 25/120 (20%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA GH D +++LL+ DIN N N A G +L+ G ++ N
Sbjct: 79 AASHGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAEDLVANGALVSICN-- 135
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G + A + + K G ++
Sbjct: 136 ----------------KYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTF 173
Score = 56.3 bits (137), Expect = 3e-10
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 151 NNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
++ + ++G+ V+ L ++ G + LH A
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC 47
Score = 39.3 bits (93), Expect = 3e-04
Identities = 11/98 (11%), Positives = 19/98 (19%), Gaps = 25/98 (25%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
N A G +L+ G ++ N +A + G ++
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSICN-KYGEMPVDKAKAPLRELLRERAEKMGQNL 164
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT 166
N G T
Sbjct: 165 NRIP------------------------YKDTFWKGTT 178
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 79.0 bits (196), Expect = 3e-18
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 22/124 (17%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLE--AGVDINT 130
+ + LL ++N + D + T F A G+L+ ++ L + D+N
Sbjct: 43 SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
N G+ LHLA V + L++ G V K L
Sbjct: 103 IT------------------NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL 144
Query: 191 HIAA 194
H AA
Sbjct: 145 HRAA 148
Score = 73.6 bits (182), Expect = 3e-16
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 69 NTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
N +A K++ELL + + + D + + LL +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD--ASTKK 185
+N + ++G H+A G+ VVK+L K D T +
Sbjct: 62 VNLDDYPD---------------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 186 GNTALHIAA 194
G T LH+A
Sbjct: 107 GVTCLHLAV 115
Score = 69.8 bits (172), Expect = 8e-15
Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 21/122 (17%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNA 133
A + + L+E G + + RAA G L + L G +N +
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD- 171
Query: 134 TSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHI 192
G L A +GH L+ K G + D KG A +
Sbjct: 172 -----------------KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 193 AA 194
A
Sbjct: 215 AL 216
Score = 37.0 bits (87), Expect = 0.002
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 24/103 (23%)
Query: 74 RAARAGHLDKLRELLEAGV-DINTSNASDPNTSFLRAARAGHLDKLRELLEA-GVDINTS 131
RAA G L + L G +N + T A GH D L+E G + +
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQD-KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK 174
+ N G A +A + V K L
Sbjct: 205 D------------------NKGAKAEDVAL---NEQVKKFFLN 226
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 76.3 bits (189), Expect = 4e-18
Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
SD L AARAG D++R L+ G D+N + T A GHL+ + LL+ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
D+N + G LHLAA GH + + LLK G V+A K
Sbjct: 71 ADVNAVD------------------AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIAA 194
G TA I+
Sbjct: 113 GKTAFDISI 121
Score = 72.8 bits (180), Expect = 1e-16
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 91 GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
G + + SD L AARAG D++R L+ G D+N +
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD------------------ 44
Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
GL L+LA GH +V+ LLK G V+A G T LH+AA
Sbjct: 45 EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 78.8 bits (195), Expect = 4e-18
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
+P L AA G L+ +++ ++ D + N + T+ A + + L+ AG
Sbjct: 20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-EEGITALHNAICGANYSIVDFLITAGA 78
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK- 185
++N+ + ++G LH AA T + AL++ G + A+T
Sbjct: 79 NVNSPD------------------SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 186 GNTALHIAA 194
G TA
Sbjct: 121 GATAFEKCD 129
Score = 78.1 bits (193), Expect = 7e-18
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
Query: 85 RELLEAGVDINTSN--ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL 142
R +L + +P L AA G L+ +++ ++ D + N
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN---------- 51
Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G+ ALH A + ++V L+ G V++ G T LH AA
Sbjct: 52 --------EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95
Score = 64.6 bits (158), Expect = 6e-13
Identities = 22/132 (16%), Positives = 34/132 (25%), Gaps = 21/132 (15%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARA--GHLDKLRELLE 123
S T AA L++ G I + SD T+F + G+ D L +
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
+ N + + AL + + V
Sbjct: 145 VEQSMGLMN------------------SGAVYALWDYSA-EFGDELSFREGESVTVLRRD 185
Query: 184 KKGNTALHIAAL 195
T AAL
Sbjct: 186 GPEETDWWWAAL 197
Score = 55.3 bits (134), Expect = 1e-09
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 15/78 (19%)
Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
R +L + + N L L AA G VV+ +K
Sbjct: 2 RSVLRKAGSPRKAR---------------RARLNPLVLLLDAALTGELEVVQQAVKEMND 46
Query: 179 VDASTKKGNTALHIAALD 196
++G TALH A
Sbjct: 47 PSQPNEEGITALHNAICG 64
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 78.6 bits (195), Expect = 5e-18
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
T + A H+D ++ LL G DIN + + N AA +G +D LL A D++
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEE-NICLHWAAFSGCVDIAEILLAAKCDLH 171
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
N +G + LH+AA++ V L V K+G T
Sbjct: 172 AVN------------------IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213
Query: 190 LHIAA 194
L A+
Sbjct: 214 LQCAS 218
Score = 78.2 bits (194), Expect = 8e-18
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA AGH+D L++AG +I+T + D T + AA HL+ ++ L++AG ++ +
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD-- 74
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIA 193
G LHLAAK GH VV+ LL G V+ G T + A
Sbjct: 75 ----------------AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 194 A 194
Sbjct: 119 T 119
Score = 76.7 bits (190), Expect = 3e-17
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VDI 128
T + AA HL+ ++ L++AG ++ + ++ +T AA+ GH + ++ LL G +D+
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
N + AT K L +I+ ++ N LH AA G + +
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD--NEENICLHWAAFSGCVDIAEI 162
Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
LL C + A G++ LHIAA
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAA 185
Score = 69.4 bits (171), Expect = 1e-14
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 92 VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKN 151
++ + + + AA AGH+D L++AG +I+T +
Sbjct: 2 MNFKMEH-QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS------------------E 42
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
+ L AA++ H VK L+K G VD +G+T LH+AA
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA 85
Score = 58.6 bits (143), Expect = 1e-10
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
N AA +G +D LL A D++ N ++ AAR D + L D+
Sbjct: 145 NICLHWAAFSGCVDIAEILLAAKCDLHAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
N G L A+ + + K
Sbjct: 204 TLKN------------------KEGETPLQCASLNSQVWSALQMSKAL 233
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 79.5 bits (197), Expect = 5e-18
Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 20/121 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A +G++ ++ ++ + + TSF A + + L
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---- 157
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT-ALHIA 193
L+ +H+ K+GH ++ LL + + + +A
Sbjct: 158 ---------------LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA 202
Query: 194 A 194
Sbjct: 203 I 203
Score = 78.3 bits (194), Expect = 1e-17
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 22/127 (17%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
+++ A ++ + LL AG N + +AA ++ LL +G+D
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKN---LLENEFPLHQAATLEDTKIVKILLFSGLDD 88
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG-N 187
+ + + G AL+ A G+ VK +K ++ K G
Sbjct: 89 SQFD------------------DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWK 130
Query: 188 TALHIAA 194
T+ + A
Sbjct: 131 TSFYHAV 137
Score = 74.5 bits (184), Expect = 3e-16
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 22/122 (18%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
L +L+ L + D ++ +++ A ++ + LL AG N
Sbjct: 4 LSRINTWKSKQLKSFL-SSKDTFKADVHG-HSASYYAIADNNVRLVCTLLNAGALKNLLE 61
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
LH AA T +VK LL G KGNTAL+
Sbjct: 62 --------------------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101
Query: 193 AA 194
A
Sbjct: 102 AV 103
Score = 71.8 bits (177), Expect = 3e-15
Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 19/128 (14%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
+ +AA ++ LL +G+D + + NT+ A +G++ ++ ++
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFD-DKGNTALYYAVDSGNMQTVKLFVKKNW 119
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
+ K + + A ++V L
Sbjct: 120 RLMFYG-----------------KTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAIL 161
Query: 187 NTALHIAA 194
+ +HI
Sbjct: 162 LSCIHITI 169
Score = 65.2 bits (160), Expect = 7e-13
Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 25/120 (20%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
+ GH+D + LL+ NT+N+ A ++ L+ L + ++I +
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS---- 223
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
A + K +++ + + + + +
Sbjct: 224 ---------------------ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
Score = 27.1 bits (61), Expect = 4.0
Identities = 3/32 (9%), Positives = 13/32 (40%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSN 98
+ ++ L + + ++E V+ + +
Sbjct: 220 NIYSANLENVLLDDAEIAKMIIEKHVEYKSDS 251
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 75.5 bits (187), Expect = 6e-18
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AA+ GH +++++LL G D+N + D NT AA+ GH + ++ LL G D+N +
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS-- 72
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
+G HLA K+GH +VK L G V+A + + H
Sbjct: 73 ----------------KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 67.4 bits (166), Expect = 6e-15
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 98 NASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNAL 157
+ D NT AA+ GH +++++LL G D+N + +G L
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS------------------KDGNTPL 46
Query: 158 HLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
HLAAK+GH +VK LL G V+A +K GNT H+A
Sbjct: 47 HLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 77.5 bits (192), Expect = 1e-17
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 19/126 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T + AAR L +L+ + D+N + ++ AA ++D LL+ G +
Sbjct: 93 TTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANK 151
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
+ N N L LAA++G K LL D +
Sbjct: 152 DMQN------------------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 193
Query: 189 ALHIAA 194
IA
Sbjct: 194 PRDIAQ 199
Score = 71.3 bits (176), Expect = 2e-15
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T+ AAR D + LLEA D N + + T A A + L+
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRAT- 83
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
++ + ++G L LAA+ +++ L+ V+A G +
Sbjct: 84 --------------DLDARM--HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127
Query: 189 ALHIAA 194
ALH AA
Sbjct: 128 ALHWAA 133
Score = 68.6 bits (169), Expect = 2e-14
Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 19/118 (16%)
Query: 78 AGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK 137
+ + + G ++ T+ AAR D + LLEA D N +
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----- 55
Query: 138 LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
N G LH A V + L+ +DA G T L +AA
Sbjct: 56 -------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 76.6 bits (189), Expect = 1e-17
Identities = 19/133 (14%), Positives = 29/133 (21%), Gaps = 26/133 (19%)
Query: 70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLEAGVD 127
+ AA G + EL E G + S L+ G D
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV------VKALLKGGCKVDA 181
I + G + G + K L+ G + A
Sbjct: 68 IKSRT------------------KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109
Query: 182 STKKGNTALHIAA 194
K +
Sbjct: 110 LYKPYKIVVFKNI 122
Score = 67.8 bits (166), Expect = 3e-14
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 97 SNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
SNA + AA G + EL E G + S S N +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKS---------------NILYDV 45
Query: 157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
L + + L+ G + + TK+G T
Sbjct: 46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83
Score = 57.4 bits (139), Expect = 1e-10
Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 32/126 (25%)
Query: 69 NTSFLRAARAGHLDKLRE------LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE-- 120
T F + G D LE G DI + +D+
Sbjct: 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY-KIVVFKNIFNYFVDENEMIP 134
Query: 121 -----LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG 175
++G+ + + GL AL + +K +
Sbjct: 135 LYKLIFSQSGLQLLIKD------------------KWGLTALEFVKRCQKPIALKMMEDY 176
Query: 176 GCKVDA 181
K +
Sbjct: 177 IKKYNL 182
Score = 37.7 bits (88), Expect = 0.001
Identities = 6/71 (8%), Positives = 18/71 (25%), Gaps = 8/71 (11%)
Query: 69 NTSFLRAARAGHLDKLRE-------LLEAGVDINTSNASDPNTSFLRAARAGHLDKLREL 121
+ +D+ ++G+ + + T+ R L+ +
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG-LTALEFVKRCQKPIALKMM 173
Query: 122 LEAGVDINTSN 132
+ N
Sbjct: 174 EDYIKKYNLKE 184
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 77.2 bits (191), Expect = 2e-17
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 22/125 (17%)
Query: 75 AARAGHLDKLRELLEAGVDINTS---NASDPN--TSFLRAARAGHLDKLRELLEAGVDIN 129
A G L + L ++ + A++ N T A+ G+L + L+ G D+N
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
NG ALHLA + +V LLK G V+ T +G +
Sbjct: 145 AQE-----------------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Query: 190 LHIAA 194
+
Sbjct: 188 YQLTW 192
Score = 69.1 bits (170), Expect = 1e-14
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 18/122 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A+ G+L + L+ G D+N + T+ A + D + LL+ G D+N
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT-- 181
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
G + L T + + L + + +
Sbjct: 182 ----------------YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225
Query: 195 LD 196
Sbjct: 226 ES 227
Score = 64.5 bits (158), Expect = 7e-13
Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 29/131 (22%)
Query: 75 AARAGHLDKLRE----LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
A E + +N N + T A + LL AG D
Sbjct: 15 AIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIAEALLGAGCDPEL 73
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG------CKVDASTK 184
+ G LHLA + G V L + + A+
Sbjct: 74 RD------------------FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115
Query: 185 KGNTALHIAAL 195
G+T LH+A++
Sbjct: 116 NGHTCLHLASI 126
Score = 49.9 bits (120), Expect = 1e-07
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 145 HQKNIKNNGLNALHLAAKDGHTT----VVKALLKGGCKVDASTKKGNTALHIAAL 195
Q +G + LHLA V++ + ++ T LH+A +
Sbjct: 2 QQLT--EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 54
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 77.1 bits (191), Expect = 2e-17
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 19/120 (15%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AAR L +L+ + D+N + ++ AA ++D LL+ G + + N
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN-- 187
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
N L LAA++G K LL D + IA
Sbjct: 188 ----------------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
Score = 73.7 bits (182), Expect = 4e-16
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 20/121 (16%)
Query: 75 AARAGHLDKLRELLEAG-VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA 133
A A + L+ D++ D T + AAR L +L+ + D+N +
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHADVNAVD- 154
Query: 134 TSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
+ G +ALH AA + LLK G D + T L +A
Sbjct: 155 -----------------DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197
Query: 194 A 194
A
Sbjct: 198 A 198
Score = 70.2 bits (173), Expect = 8e-15
Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
C + + + + G ++ T+ AAR D + LLE
Sbjct: 19 CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDAS 182
A D N + N G LH A V + L+ +DA
Sbjct: 79 ASADANIQD------------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 183 TKKGNTALHIAA 194
G T L +AA
Sbjct: 121 MHDGTTPLILAA 132
Score = 56.7 bits (138), Expect = 5e-10
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 31/116 (26%)
Query: 92 VDINTSN---------AS---DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLD 139
+D+N AS + + + + G ++
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH---------- 50
Query: 140 NQLNIHQKNIK-NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
N G ALHLAA+ + K LL+ + G T LH A
Sbjct: 51 --------NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Score = 33.2 bits (77), Expect = 0.048
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
AAR G + + LL+ + + ++ D A H D +R L + +
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMD-RLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 76.1 bits (188), Expect = 4e-17
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 75 AARAGHLDKLRELLEAGVDINTS--NASDPN--TSFLRAARAGHLDKLRELLEAGVDINT 130
AA +L+ L+EA ++ + T+ A +++ +R LL G ++
Sbjct: 44 AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS- 102
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
++ + + N+ G + L AA G +V+ L++ G + A GNT L
Sbjct: 103 ----ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Query: 191 HIAAL 195
HI L
Sbjct: 159 HILIL 163
Score = 66.1 bits (162), Expect = 2e-13
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 28/139 (20%)
Query: 70 TSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
+ L AA+ + L +LL+ G +++ A T+ AA +L+ L+EA ++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMG-ETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK--- 185
TS+ G ALH+A + + +V+ALL G V A
Sbjct: 64 VFEPMTSEL-------------YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110
Query: 186 ----------GNTALHIAA 194
G L AA
Sbjct: 111 HYRPHNLIYYGEHPLSFAA 129
Score = 57.6 bits (140), Expect = 2e-10
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 40/142 (28%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLR------------AARAGHLDKLRELL 122
A +++ +R LL G ++ AA G + +R L+
Sbjct: 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 123 EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA- 181
E G DI + + G LH+ + T + D
Sbjct: 142 EHGADIRAQD------------------SLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 182 ---------STKKGNTALHIAA 194
+G T +A
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAG 205
Score = 57.2 bits (139), Expect = 3e-10
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 17/117 (14%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE----LLEAGVDINT 130
AA G + +R L+E G DI + S NT + + LL +
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQD-SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH- 185
Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
K L+ N N GL LA +G+ + + L++ + A+ +
Sbjct: 186 ----LKSLELVPN-------NQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 46.4 bits (111), Expect = 1e-06
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 153 GLNALHLAAKDGHT-TVVKALLKGGCKVDASTKKGNTALHIAAL 195
+ L LAAK+ + K L GC+V G TALHIAAL
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 74.3 bits (184), Expect = 5e-17
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEA 124
S+ + L AA+AG ++ +++L V+ +T AA + + LL+
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 125 GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK 184
G D++ + GL LH A GH V + L+K G V+ +
Sbjct: 65 GADVHAKD------------------KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106
Query: 185 KGNTALHIAA 194
T LH AA
Sbjct: 107 WKFTPLHEAA 116
Score = 50.5 bits (122), Expect = 3e-08
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 148 NIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
+ L AAK G VK L + +T LH AA
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA 50
Score = 45.5 bits (109), Expect = 2e-06
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 20/102 (19%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
A GH + L++ G +N ++ T AA G + + LL+ G D N
Sbjct: 82 ACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN-- 138
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
+G L L G T + L
Sbjct: 139 ----------------RDGNTPLDLVKD-GDTDIQDLLRGDA 163
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 74.7 bits (185), Expect = 6e-17
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 19/126 (15%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T + A G + + +L+E + + + +T+ + A + L +LL G ++
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKD-IEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
NT + +G L + G++ + LL+ G V+ +G T
Sbjct: 95 NTKD------------------FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136
Query: 189 ALHIAA 194
L +A+
Sbjct: 137 PLIVAS 142
Score = 54.3 bits (132), Expect = 2e-09
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 125 GVDINTSNATSKKLDNQLNIHQ-----KNIKNN-GLNALHLAAKDGHTTVVKALLKGGCK 178
G ++ + +K+ ++ +I+Q +N +++ L +A G + L++ K
Sbjct: 1 GSHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60
Query: 179 VDASTKKGNTALHIAA 194
++ +G+TAL A
Sbjct: 61 LEDKDIEGSTALIWAV 76
Score = 50.9 bits (123), Expect = 3e-08
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
T + + G+ + LLE G ++N N + T + A++ G + +++LLE G DI
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRN-LEGETPLIVASKYGRSEIVKKLLELGADI 160
Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL 173
+ + GL A A G V+K
Sbjct: 161 SARD------------------LTGLTAEASARIFGRQEVIKIFT 187
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 69.3 bits (171), Expect = 7e-16
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 18/86 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
AAR GHL+ ++ LLEAG D+N + NG LHLAA++GH V
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKD------------------KNGRTPLHLAARNGHLEV 50
Query: 169 VKALLKGGCKVDASTKKGNTALHIAA 194
VK LL+ G V+A K G T LH+AA
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLHLAA 76
Score = 64.7 bits (159), Expect = 4e-14
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 19/102 (18%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
AAR GHL+ ++ LLEAG D+N + + T AAR GHL+ ++ LLEAG D+N +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-- 65
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
NG LHLAA++GH VVK LL+ G
Sbjct: 66 ----------------KNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 58.5 bits (143), Expect = 7e-12
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
NG LHLAA++GH VVK LL+ G V+A K G T LH+AA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 73.8 bits (182), Expect = 1e-15
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 12/122 (9%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
L AG + V+I T A +K +L+ +
Sbjct: 98 LHTEAAGSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEKSEDLI--------VH 147
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
+ + +++ + + L LA +V L+K G K +ALH
Sbjct: 148 EAKECIAAGADVNAMD--CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 205
Query: 193 AA 194
AA
Sbjct: 206 AA 207
Score = 72.7 bits (179), Expect = 3e-15
Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 69 NTSFLRAARAGHLDKL---RELLEAGVDINTSNASDPN-------TSFLRAARAGHLDKL 118
T+ + A D++ + L+E G ++ A+ + T+ AA+ ++ +
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295
Query: 119 RELL-EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
+ L+ E G + + + +G + LAA++G VV L++ G
Sbjct: 296 KYLVGEKGSNKDKQD------------------EDGKTPIMLAAQEGRIEVVMYLIQQGA 337
Query: 178 KVDASTKKGNTALHIAA 194
V+A +TA +A
Sbjct: 338 SVEAVDATDHTARQLAQ 354
Score = 69.2 bits (170), Expect = 4e-14
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 30/137 (21%)
Query: 69 NTSFLRAARAGHLD--------KLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE 120
T A + + +E + AG D+N + D NT + A A +
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRRRLVAY 184
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL---KGGC 177
L++AG D N + +ALH AA + ++ +L K
Sbjct: 185 LMKAGADPTIYN------------------KSERSALHQAAANRDFGMMVYMLNSTKLKG 226
Query: 178 KVDASTKKGNTALHIAA 194
++ + G TAL I A
Sbjct: 227 DIEELDRNGMTALMIVA 243
Score = 66.9 bits (164), Expect = 3e-13
Identities = 17/136 (12%), Positives = 27/136 (19%), Gaps = 29/136 (21%)
Query: 67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
+ G+ + L AG + V
Sbjct: 60 YSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPE-PESPIK-LHTEAAGSYAITEPITRESV 117
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVV--------KALLKGGCK 178
+I + LH A + K + G
Sbjct: 118 NIID-------------------PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158
Query: 179 VDASTKKGNTALHIAA 194
V+A NT L +A
Sbjct: 159 VNAMDCDENTPLMLAV 174
Score = 60.0 bits (146), Expect = 7e-11
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 33/140 (23%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE---AG 125
NT + A A + L++AG D N ++ +AA + +L
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLK 225
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT---TVVKALLKGGCKV--- 179
DI + NG+ AL + A + K L++ G KV
Sbjct: 226 GDIEELD------------------RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267
Query: 180 -----DASTKKGNTALHIAA 194
D+ KG TALH AA
Sbjct: 268 GAARKDSEKYKGRTALHYAA 287
Score = 53.0 bits (128), Expect = 2e-08
Identities = 7/61 (11%), Positives = 16/61 (26%)
Query: 138 LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDS 197
D + + +++ L +G+ + + LH A S
Sbjct: 46 YDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS 105
Query: 198 L 198
Sbjct: 106 Y 106
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 72.1 bits (177), Expect = 2e-15
Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 13/133 (9%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASDPNTSFLR------------AARAGHLDKLRELL 122
A L ++ L+E G D++ AA D + LL
Sbjct: 97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156
Query: 123 EAGVDINTSNATSKKLDNQLNIHQKNIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDA 181
E + AT + L+ N+ +AL + DG + L +
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI 216
Query: 182 STKKGNTALHIAA 194
S +G T L +AA
Sbjct: 217 SNHQGLTPLKLAA 229
Score = 66.7 bits (163), Expect = 2e-13
Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 18/134 (13%)
Query: 76 ARAGHLDKLRELLEAGVDINTSNA---SDPNTSFLR-------AARAGHLDKLRELLEAG 125
+ G + LL+ D + F + A L ++ L+E G
Sbjct: 54 LQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK---VDAS 182
D++ + HQ G L LAA VV LL+ + ++A+
Sbjct: 114 ADVHL-----RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT 168
Query: 183 TKKGNTALHIAALD 196
GNT LH +
Sbjct: 169 DSLGNTVLHALVMI 182
Score = 59.4 bits (144), Expect = 6e-11
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 36/131 (27%)
Query: 75 AARAGHLDKLRELLEAGVDINTSNASD------------------PNTSFLRAARAGHLD 116
AA D + LLE + A+D N++ + G L
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202
Query: 117 KLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
L SN + GL L LAAK+G + + +L+
Sbjct: 203 MGARLCPTVQLEEISN------------------HQGLTPLKLAAKEGKIEIFRHILQRE 244
Query: 177 CKVDASTKKGN 187
A+ +
Sbjct: 245 FSGAAAHHHHH 255
Score = 59.0 bits (143), Expect = 9e-11
Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 32/149 (21%)
Query: 70 TSFLRAARAGHLDKLRELLE--------AGVDINTSNASDPNTSFLRAA---RAGHLDKL 118
G ++L LLE T ++ T ++A + G +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTG-KTCLMKAVLNLQDGVNACI 62
Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
LL+ D + K + G +ALH+A + VK L++ G
Sbjct: 63 MPLLQIDKDSG-----NPKPLVNAQCTDEF--YQGHSALHIAIEKRSLQCVKLLVENGAD 115
Query: 179 VDA-------------STKKGNTALHIAA 194
V G L +AA
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAA 144
Score = 44.0 bits (104), Expect = 1e-05
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 52 HNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAAR 111
H V+ S N++ + G L L SN T AA+
Sbjct: 177 HALVM-----IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN-HQGLTPLKLAAK 230
Query: 112 AGHLDKLRELLEAGVDINTSNAT 134
G ++ R +L+ ++
Sbjct: 231 EGKIEIFRHILQREFSGAAAHHH 253
Score = 37.5 bits (87), Expect = 0.002
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 8/51 (15%)
Query: 155 NALHLAAKDGHTTVVKALLK--------GGCKVDASTKKGNTALHIAALDS 197
+ L G + LL+ G T L A L+
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNL 54
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 65.6 bits (160), Expect = 4e-13
Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 31/149 (20%)
Query: 70 TSFLRAARAGHLDKLRELLEA-------GVDINTSNASDPNTSFLRA---ARAGHLDKLR 119
S A + +L LL D + T L+A G D +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV 179
LL+ ++ L +N + G ALH+A + + T+V L++ G V
Sbjct: 75 LLLDVARKTDS-------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127
Query: 180 DASTKK--------------GNTALHIAA 194
A+ G L +AA
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAA 156
Score = 64.8 bits (158), Expect = 8e-13
Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 17/133 (12%)
Query: 76 ARAGHLDKLRELLEAGVDIN----------TSNASDPNTSFLRAARAGHLDKLRELLEAG 125
G D + LL+ + T + T+ A ++ + L+E G
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK---VDAS 182
D+ + D + G L LAA +VK LL+ + + A
Sbjct: 125 ADVQAAA----NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180
Query: 183 TKKGNTALHIAAL 195
GNT LH
Sbjct: 181 DSVGNTVLHALVE 193
Score = 63.3 bits (154), Expect = 3e-12
Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 31/159 (19%)
Query: 48 EAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAG---VDINTSNASDPNT 104
+A + + AA L ++ LL+ DI+ + S NT
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD-SVGNT 186
Query: 105 SFLRAARAGHLDK---------LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLN 155
E+L G ++ + + + + GL
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK-----------GLT 235
Query: 156 ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
L LAA G V+ +L+ H AA
Sbjct: 236 PLALAASSGKIGVLAYILQRE-------IHEPECRHAAA 267
Score = 53.6 bits (129), Expect = 7e-09
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 44/165 (26%)
Query: 59 EPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSN------ASDPNTSFLR---- 108
D Y T+ A ++ + L+E G D+ + + F
Sbjct: 92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151
Query: 109 ---AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGH 165
AA L ++ LL+ +I ++ + G LH +
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPA-------------DISARD--SVGNTVLHALVEVAD 196
Query: 166 TTV----------------VKALLKGGCKVDASTKKGNTALHIAA 194
TV L + + +KG T L +AA
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241
Score = 34.4 bits (79), Expect = 0.021
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 146 QKNIKNNGLNALHLAAKDGHTTVVKALL-------KGGCKVDAS-TKKGNTALHIAAL 195
+K + ++ A + +++LL K + + G T L A L
Sbjct: 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 64.5 bits (157), Expect = 8e-13
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 67 DPNTSFLRAARAGHLDKLRE-LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
N A +G LD+L+E +L ++ D T+ A AGH + + LL+ G
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
V +N + + G + LH+AA G +VKALL G V+A +
Sbjct: 64 VPVNDKD------------------DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105
Query: 186 GNTALHIAALDS 197
G T LH AA +
Sbjct: 106 GCTPLHYAASKN 117
Score = 56.8 bits (137), Expect = 4e-10
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 19/129 (14%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
+ T AA + LLE G + + + T+ RAA G+L + LL
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD-HYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
N + G LHLA + K L+ G + K+
Sbjct: 163 ASTNIQD------------------TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE 204
Query: 186 GNTALHIAA 194
T L +A
Sbjct: 205 EKTPLQVAK 213
Score = 31.0 bits (70), Expect = 0.20
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
++ NT A +++ + L+ G I N + T A G L + + L G
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-KEEKTPLQVAK--GGLGLILKRLAEG 226
Query: 126 VDIN 129
+ +
Sbjct: 227 EEAS 230
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 62.5 bits (151), Expect = 1e-11
Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 19/178 (10%)
Query: 17 KKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAA 76
K E + + + P + + + + F +
Sbjct: 149 TKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASG 208
Query: 77 RAGHLDKLRELLEAGVDINTSNASDPNTSFL-RAARAGHLDKLRELLEAGVDINTSNATS 135
L + + L G D+N N N + L +A A L LL+ G ++N +++
Sbjct: 209 HPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-- 266
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
G LH A GHT + LK G + A +G L IA
Sbjct: 267 ----------------AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 58.6 bits (142), Expect = 1e-10
Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 31/149 (20%)
Query: 70 TSFLRAARAGHLDKLRELLE----AGVDINTSNASDPN---TSFLRAA---RAGHLDKLR 119
G D L LL + +P+ T +A AG D +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV 179
LL+ + + +N +++ G ALH+A + V+ L++ G V
Sbjct: 67 ILLDIA-------EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119
Query: 180 DASTKK--------------GNTALHIAA 194
A + G L +AA
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAA 148
Score = 57.9 bits (140), Expect = 2e-10
Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 76 ARAGHLDKLRELLEAGVD-------INTSNASDPN---TSFLRAARAGHLDKLRELLEAG 125
AG D + LL+ IN+ T+ A + L+E G
Sbjct: 57 LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK---VDAS 182
D++ + + G L LAA +V L + G K +
Sbjct: 117 ADVHAQA----RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172
Query: 183 TKKGNTALHIAA 194
+GNT LH
Sbjct: 173 DSRGNTVLHALV 184
Score = 47.9 bits (114), Expect = 7e-07
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 24/151 (15%)
Query: 49 AKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAG---VDINTSNASDPNTS 105
A+ + + AA + L E G D+ + S NT
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD-SRGNTV 179
Query: 106 FLRAARAGHLDK---------LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
+ LL + L+N +GL+
Sbjct: 180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN-----------DGLSP 228
Query: 157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
L +AAK G + + +++ A+ +
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 42.5 bits (100), Expect = 4e-05
Identities = 27/165 (16%), Positives = 43/165 (26%), Gaps = 44/165 (26%)
Query: 59 EPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDIN-------------TSNASDPNTS 105
P D Y T+ A + L+E G D++
Sbjct: 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP 143
Query: 106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGH 165
AA + L E G Q ++ +++ + G LH
Sbjct: 144 LSLAACTNQPHIVHYLTENG-------------HKQADLRRQD--SRGNTVLHALVAIAD 188
Query: 166 ---------TTVVKALLKGGCKVDAST-------KKGNTALHIAA 194
T + LL K+ T G + L +AA
Sbjct: 189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233
Score = 34.8 bits (80), Expect = 0.015
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKK----GNTALHIAALDS 197
+ + + DG ++ LL ++ + G T L A L+
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNL 57
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 55.4 bits (133), Expect = 2e-09
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 26/144 (18%)
Query: 59 EPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVD----INTSNASDPNTSFL----RAA 110
+ + S A + + L + GVD I +N +P+ + L R+
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180
Query: 111 RAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVK 170
L + L++ +++ G ALH + +K
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTG------------------KGSTALHYCCLTDNAECLK 222
Query: 171 ALLKGGCKVDASTKKGNTALHIAA 194
LL+G ++ + + G T L IA
Sbjct: 223 LLLRGKASIEIANESGETPLDIAK 246
Score = 40.7 bits (95), Expect = 1e-04
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 15/107 (14%)
Query: 92 VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKN 151
++ + S A + + L + GVD+ I N
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE------------KIPLANGHE 167
Query: 152 NGLNALHLAAKDGHTT---VVKALLKGGCKVDASTKKGNTALHIAAL 195
ALHLA + T +V L++ +D T KG+TALH L
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 214
Score = 37.3 bits (86), Expect = 0.002
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 22/121 (18%)
Query: 60 PCYDCYSDPNTSFLRAARAGHLDKLRE---LLEAGVDINTSNASDPNTSFLRAARAGHLD 116
P + + T+ A R+ L L++ +++ +T+ + +
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAE 219
Query: 117 KLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
L+ LL I +N +G L +A + H + L +
Sbjct: 220 CLKLLLRGKASIEIANE------------------SGETPLDIAKRLKHEHCEELLTQAL 261
Query: 177 C 177
Sbjct: 262 S 262
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 55.0 bits (132), Expect = 3e-09
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
+ + G + L+ + + P S + D +
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-----KNGERKDSILE 264
Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
K ++ ++ +NG L++AA+ G+ ++V ALL G + K G +
Sbjct: 265 NLDLKWIIANMLNAQD--SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
Query: 193 AA 194
A
Sbjct: 323 GA 324
Score = 55.0 bits (132), Expect = 3e-09
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 23/147 (15%)
Query: 66 SDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA 124
N + L ++ + +++N NT +L+ ++ L++
Sbjct: 94 GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 153
Query: 125 GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT----TVVKALLKGGCKVD 180
G + + N G + L A K + T L +
Sbjct: 154 GSNRLYGD------------------NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195
Query: 181 ASTKKGNTALHIAALDSLVTDIASSAI 207
T LH + S +T +++A
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAK 222
Score = 53.5 bits (128), Expect = 1e-08
Identities = 24/152 (15%), Positives = 44/152 (28%), Gaps = 18/152 (11%)
Query: 45 LRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNT 104
L KI A+ S + +FL+ + ++ L S N
Sbjct: 39 LSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQ 98
Query: 105 SFLRAARAGHLDKLRELL-EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKD 163
+ L ++ + +++N +D +G LH
Sbjct: 99 QQQHVSFDSLLQEVNDAFPNTQLNLNI------PVDE-----------HGNTPLHWLTSI 141
Query: 164 GHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
+ +VK L+K G G + L A
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
Score = 37.3 bits (86), Expect = 0.003
Identities = 13/141 (9%), Positives = 38/141 (26%), Gaps = 33/141 (23%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR---ELLEAG 125
NT +L+ ++ L++ G + + + ++A ++ + LL+
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG-ESCLVKAVKSVNNYDSGTFEALLDYL 190
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTT------------VVKALL 173
+ ++ + LH T ++ ++
Sbjct: 191 YP---------------CLILED--SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233
Query: 174 KGGCKVDASTKKGNTALHIAA 194
K + S +
Sbjct: 234 KKQNRPIQSGTNEKESKPNDK 254
Score = 26.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 69 NTSFLRAARAGHLDKLRELLEAGVDINTSN 98
+T AAR G++ + LL+ G D +N
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIAN 313
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 53.8 bits (129), Expect = 8e-09
Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 26/136 (19%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTS-----NASDPNTSFLRAARAGHLDKL-- 118
+ A L + E G D + A + + L
Sbjct: 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 208
Query: 119 -RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
+++ G ++ A +G ALH AA +K LLKG
Sbjct: 209 VDFIIQNGGHLDAKAA------------------DGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 178 KVDASTKKGNTALHIA 193
V + G TAL IA
Sbjct: 251 LVGTVNEAGETALDIA 266
Score = 41.5 bits (97), Expect = 9e-05
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 97 SNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
+ A L + E G D + +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPL------------PGPDAQAPEELV 193
Query: 157 LHLAAKDGHTT---VVKALLKGGCKVDASTKKGNTALHIAAL 195
LHLA K + +V +++ G +DA GNTALH AAL
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 47.6 bits (113), Expect = 1e-06
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
+ A L + E G D + + + LHL
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQP------------LPGPDAQAPEELVLHL 177
Query: 160 AAKDGHTT---VVKALLKGGCKVDASTKKGNTALHIAAL 195
A K + +V +++ G +DA GNTALH AAL
Sbjct: 178 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216
Score = 43.0 bits (101), Expect = 4e-05
Identities = 30/136 (22%), Positives = 43/136 (31%), Gaps = 26/136 (19%)
Query: 66 SDPNTSFLRAARAGHLDKLRELLEAGVDIN----TSNASDPNTSFL----RAARAGHLDK 117
+ A L + E G D +A P L + A L
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 189
Query: 118 LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
+ +++ G ++ A +G ALH AA +K LLKG
Sbjct: 190 VDFIIQNGGHLDAKAA------------------DGNTALHYAALYNQPDCLKLLLKGRA 231
Query: 178 KVDASTKKGNTALHIA 193
V + G TAL IA
Sbjct: 232 LVGTVNEAGETALDIA 247
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 8e-06
Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 48/232 (20%)
Query: 11 FGTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDP-- 68
F T+L K+E+ ++ EE N + ++ ++ E + + + + Y D
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLR-INYKFL---MSPIKTEQRQPSMMTRM---YIEQRDRLY 120
Query: 69 --NTSF--LRAARAGHLDKLRELL-----EAGVDIN-------TSNASDPNTSFLRAARA 112
N F +R KLR+ L V I+ T A D +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-------VCLS 173
Query: 113 GHLDKLRELLEAGV---DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVV 169
K++ ++ + ++ N+ L+ + + N + H + +
Sbjct: 174 ---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 170 KALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRT 221
+A L+ K +K L + L ++ ++ +A +L C ++L T
Sbjct: 231 QAELRRLLK----SKPYENCLLV--LL----NVQNAKAWNAFNLSCKILLTT 272
Score = 41.4 bits (96), Expect = 2e-04
Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 42/165 (25%)
Query: 21 EEERKEEEEEEEKNISA--IGPAVTKLRQEA-KIHNAVISL-------EPC-YDCYSDPN 69
+ +E K++ + L +E + +S+ +D + N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 70 TSFLRAARAGHLDKL-----RELLEA------GVDINTS------NASDPNTSFLRAARA 112
L L+ L R++ + I T + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---- 407
Query: 113 GHLDKL--RELLEAGVDINTSN------ATSKKLDNQLNIHQKNI 149
++KL L+E +T + KL+N+ +H+ +
Sbjct: 408 --VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Score = 41.0 bits (95), Expect = 2e-04
Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 53/221 (23%)
Query: 16 EKKEKEEERKEEEEEEEK--NISAIGPA--VTKLRQEAKIHNAVISLEPCYDCYSDPNT- 70
E+++ + E+ ++ N + + V++L+ K+ A++ L P N
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP------AKNVL 154
Query: 71 ---------SFLRAARAGHLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLRE 120
+++ A K++ ++ + +N N + P T L+ L++
Sbjct: 155 IDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---------LEMLQK 204
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGL-------NALHLAAKD-GHTTVVKAL 172
LL +D N ++ + + +L IH + L N L L + + A
Sbjct: 205 LL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNA- 261
Query: 173 LKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL 213
CK+ +T+ VTD S+A T SL
Sbjct: 262 FNLSCKILLTTR-----------FKQVTDFLSAATTTHISL 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 27/87 (31%)
Query: 51 IHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAA 110
IH L + +T+ ++ ++ + A + N++ RA
Sbjct: 101 IHALAAKLLQ------ENDTTLVKTKEL-----IKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 111 RAGH----------------LDKLREL 121
G+ ++LR+L
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDL 176
Score = 35.4 bits (81), Expect = 0.013
Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 55/160 (34%)
Query: 68 PNTSFLRAARAGHLDKLRELLEAGVDINTSN--ASDPNTS-------FL-------RAAR 111
P SF A++ L+E + T A D T+ FL ++
Sbjct: 23 PTASFFIASQ------LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 112 AGHLDK-LRELLEA-------GVDINTSNAT-SKKLDNQLNIHQKNIKN----------- 151
G D+ L L G DI+ A ++ D L ++ IKN
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 152 ---NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
+AL A +G+ +V A+ GG +GNT
Sbjct: 137 FDKKSNSALFRAVGEGNAQLV-AIF-GG--------QGNT 166
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.008
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 11 FGTMLEKKEKEEERKEEE--EEEEKNI 35
L++ + + E+E E+ +K++
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDL 120
Score = 34.7 bits (79), Expect = 0.010
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 16 EKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAK 50
E++ K + + + + + R++AK
Sbjct: 92 EEQRKRLQELDAASKVME---------QEWREKAK 117
Score = 29.0 bits (64), Expect = 1.1
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 16 EKKEKEEER-KEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSD 67
++ +E E ++ EE+ K + + A + QE + A LE S+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK-AKKDLEEWNQRQSE 129
Score = 27.8 bits (61), Expect = 2.3
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 16 EKKEKEEERKEEEEEE 31
E+ EK + ++
Sbjct: 129 EQVEKNKINNRIADKA 144
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 31.1 bits (71), Expect = 0.26
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 15 LEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHN 53
LEK + +V KL + H+
Sbjct: 262 LEKLADGDLGTLVPRGSMAISDPNSSSVDKLAAALEHHH 300
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic
structure 2 function project, S2F, unknown function;
HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP:
d.58.4.7
Length = 101
Score = 29.7 bits (67), Expect = 0.27
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 15/75 (20%)
Query: 61 CYDCYSDPNTSFLRAA-RAGHLDKLRELLEAGV----------DINTSNASDPNTSFLRA 109
D PNT R A R HL +L++L D + + S +
Sbjct: 10 AQDI---PNTLEKRLAVREQHLARLKQLQAENRLLTAGPNPAIDDENPSEAGFTGSTV-I 65
Query: 110 ARAGHLDKLRELLEA 124
A+ +L ++
Sbjct: 66 AQFENLQAAKDWAAQ 80
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 29.1 bits (65), Expect = 0.50
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 11 FGTMLEKKEKEEERKEEEEEEEKNISAI--------GPAVTKLRQEAK-IHNAVISLE 59
+ + L K +++ +K+ E +K + A KLR +AK + + + L+
Sbjct: 5 YSSYLAKADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQ 62
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase,
family F/10 of glycosyl hydrolases, glycosyltransferase;
1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Length = 347
Score = 30.1 bits (68), Expect = 0.52
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDIN--------TSNASDPNTSFLRAARAGHL 115
Y+D N L + ++ + E GV I+ + S + +
Sbjct: 195 FYNDYNIEDLGPKSNAVFNMIKSMKERGVPIDGVGFQCHFINGMSPEYLASIDQN----- 249
Query: 116 DKLRELLEAGVDI 128
++ E GV +
Sbjct: 250 --IKRYAEIGVIV 260
>3c8n_A Probable F420-dependent glucose-6-phosphate dehyd FGD1; TIM barrel,
non-prolyl CIS-peptide, oxidoreductase; 1.90A
{Mycobacterium tuberculosis} PDB: 3b4y_A
Length = 356
Score = 29.0 bits (65), Expect = 1.4
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 80 HLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLREL 121
++K+ + + G++ + FL ++ +LR L
Sbjct: 313 AVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRRL 355
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 28.8 bits (65), Expect = 1.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 55 VISLEPCYDCY 65
VI + P YDCY
Sbjct: 112 VIIMVPFYDCY 122
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 28.8 bits (65), Expect = 1.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 55 VISLEPCYDCY 65
VI +EP +DCY
Sbjct: 118 VIIIEPFFDCY 128
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 28.7 bits (65), Expect = 1.5
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 55 VISLEPCYDCY 65
VI +P YD Y
Sbjct: 118 VICFDPSYDSY 128
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 28.8 bits (65), Expect = 1.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 55 VISLEPCYDCY 65
VI +EP +DCY
Sbjct: 128 VIIIEPFFDCY 138
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 28.3 bits (64), Expect = 1.7
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 74 RAARAGHLDKLRELLEAGVDINTSNASDPNT------SFLR 108
R+A + ++++ G+ ++ + + +FLR
Sbjct: 50 RSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVILKTFLR 90
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 28.4 bits (64), Expect = 1.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 55 VISLEPCYDCY 65
V+ +EP YD Y
Sbjct: 113 VLLIEPFYDSY 123
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,,
hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3
Length = 302
Score = 28.4 bits (64), Expect = 1.8
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINT------SNASDPNTSFLRAARAGHLDK 117
CY+D NT A + +++ + GV I+ N++ P S +A
Sbjct: 168 CYNDYNTDGQNAKSNAVYEMVKDFKQRGVPIDCVGFQSHFNSNSPVPSDFQAN------- 220
Query: 118 LRELLEAGVDI 128
L+ + GVD+
Sbjct: 221 LQRFADLGVDV 231
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 28.3 bits (64), Expect = 2.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 55 VISLEPCYDCY 65
V+ LEP +D Y
Sbjct: 105 VVVLEPFFDVY 115
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 27.6 bits (61), Expect = 2.3
Identities = 6/54 (11%), Positives = 20/54 (37%)
Query: 7 DLGAFGTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEP 60
+ +++ ++ E + + +K+ +A +L+ + A P
Sbjct: 122 GVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAP 175
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 28.3 bits (64), Expect = 2.3
Identities = 6/47 (12%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 73 LRAA----RAGHLDKLRELLEAGVDINTSNASDPNT---SFLRAARA 112
+ A R ++ ++++ + + + D + + AA+A
Sbjct: 371 VLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKA 417
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism,
homocysteinemia, zinc, thiol alkyl transfer; HET: CBH
CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A*
1umy_A
Length = 406
Score = 27.9 bits (62), Expect = 2.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 119 RELLEAGVDI---NTSNATSKKLDNQLNIHQKNIKNNGLN--ALHLA--AKDGHTTVV 169
RE L AG ++ T A+ KL+N+ N + I +N A +A D +V
Sbjct: 61 REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVADEGDALV 118
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 27.9 bits (63), Expect = 2.8
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 73 LRAA----RAGHLDKLRELLEAGVDINTSNASDPNT---SFLRAARA 112
+ A A LR LL G + + +DP T A A
Sbjct: 362 IVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAAVAA 408
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN;
1.94A {Fusarium oxysporum}
Length = 327
Score = 27.8 bits (62), Expect = 3.0
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 28/99 (28%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDIN--------------TSNASDPNTSFLRA 109
Y+D N + A G R + G+ I+ T N P+ + L +
Sbjct: 170 YYNDYNLEYGNAKTEGAKRIARLVKSYGLRIDGIGLQAHMTSESTPTQNTPTPSRAKLAS 229
Query: 110 ARAGHLDKLRELLEAGV-------DINTSNATSKKLDNQ 141
L+ L + GV DI + +++
Sbjct: 230 V-------LQGLADLGVDVAYTELDIRMNTPATQQKLQT 261
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 3.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 168 VVKALLKGGCKVDASTKK 185
V++ LL+GG KV +T +
Sbjct: 493 VLQGLLQGGAKVVVTTSR 510
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 27.3 bits (60), Expect = 3.2
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 15 LEKKEKEEERKEEEEEEEKNI 35
+ EK+++R+ ++ E I
Sbjct: 85 YWEFEKDKDREHDKLVELCKI 105
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 27.3 bits (61), Expect = 3.3
Identities = 6/41 (14%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 74 RAARAGHLDKLRELLEAGVDINTSNASDPNT------SFLR 108
R+A + ++++ G+ ++ ++ + +FLR
Sbjct: 86 RSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLR 126
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 27.5 bits (62), Expect = 3.4
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 77 RAGHLDKLRELLEAGVDINTSNASDPNT---SFLRAARA 112
L+EA I + +D + F+RA
Sbjct: 369 APRDFALATRLVEARAAIEPARLADLSNSMRDFVRANEG 407
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization,
protein binding; 2.29A {Homo sapiens}
Length = 1253
Score = 27.8 bits (61), Expect = 3.6
Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 17/143 (11%)
Query: 20 KEEERKEEEEEEEKNISAIGPAVTKLRQ--------EAKIHNAVISLEPCYDCYSDPNTS 71
K E+ E EK + + P VTKL + V L C+++
Sbjct: 97 KCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRL-----CHAERRKD 151
Query: 72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNT-SFLRAARAGHLDKLRELLEAGVDINT 130
F+ A L K + ++ S N S + A A L K+ + N
Sbjct: 152 FVSEAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRA-AQFLRKMADPQSIQESQNL 210
Query: 131 SN--ATSKKLDNQLNIHQKNIKN 151
S A K+ L + I
Sbjct: 211 SMFLANHNKITQSLQQQLEVISG 233
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 27.4 bits (61), Expect = 3.8
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 11/44 (25%)
Query: 12 GTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAV 55
G + + + E E E + + R+ A+ H
Sbjct: 28 GKLFDSRNMEIENFTESDI-----------LQDARRAAEAHRRA 60
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A
{Penicillium canescens}
Length = 335
Score = 27.4 bits (61), Expect = 3.8
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 14/72 (19%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDIN-------TSNASDPNTSFLRAARAGHLD 116
Y+D L + L + G+ I+ P+ + A
Sbjct: 177 YYNDYGIENPGTKSTAVLQLVSNLRKRGIRIDGVGLESHFIVGETPSLADQLAT------ 230
Query: 117 KLRELLEAGVDI 128
+ ++A +D+
Sbjct: 231 -KQAYIKANLDV 241
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 27.3 bits (61), Expect = 4.0
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 55 VISLEPCYDCY 65
VI EP +D Y
Sbjct: 145 VIVFEPFFDQY 155
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.5 bits (60), Expect = 4.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 14 MLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLE 59
+L++ E E+ RKE E E +++ K E++ A I E
Sbjct: 693 ILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGE 738
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription
regulation, DNA-binding, family, transcription,
transcriptional regulator; 2.10A {Bacillus cereus} PDB:
2wv1_A 2jk3_A 2fx0_A
Length = 186
Score = 27.0 bits (60), Expect = 4.3
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 73 LRAARAGHLDKLRELLEAGVDINTSN------------ASDPNTSFLRAARAGHLDKLRE 120
L + ++ LRE L N ++ G ++L+E
Sbjct: 72 LEKNQFNPINALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKE 131
Query: 121 LLEAGVD 127
+L+ G
Sbjct: 132 ILQEGEK 138
>2ibd_A Possible transcriptional regulator; probable transcriptional
regulatory protein, rhodococcus SP. structural genomics,
PSI-2; 1.50A {Rhodococcus SP}
Length = 204
Score = 26.9 bits (60), Expect = 4.3
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 58 LEPCYDCYSDPNTSFLRAARAGHLD---KLRELLEAGVDINTSN--------------AS 100
++ + D R A LD L L+ + ++ +
Sbjct: 62 VDEILRGFLDDLFGKYREIVASGLDSRATLEALVTTSYEAIDASHSAVAIYQDEVKHLVA 121
Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVD 127
+ ++L + +LEAGV
Sbjct: 122 NERFTYLSELNTEFRELWMGVLEAGVK 148
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate
binding module, xylan degradation; HET: XYP; 1.85A
{Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB:
1us3_A
Length = 530
Score = 27.3 bits (60), Expect = 5.0
Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINT------SNASDPNTSFLRAARAGHLDK 117
Y+D N A +D +++ + I+ + P+ + + AA
Sbjct: 346 YYNDYNIEQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAA------- 398
Query: 118 LRELLEAGVDI 128
++++++ G+ +
Sbjct: 399 MKKVVDLGLLV 409
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga
petrophila rku-1} PDB: 3nj3_A* 1vbr_A* 1vbu_A
Length = 341
Score = 27.0 bits (60), Expect = 5.4
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 22/93 (23%)
Query: 64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINT------SNASDPNTSFLRAARAGHLDK 117
Y+D + + A + ++EL E GV ++ + N R
Sbjct: 189 IYNDYSIEEINAKSNFVYNMIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRN------- 241
Query: 118 LRELLEAGVDI---------NTSNATSKKLDNQ 141
L + G+ I S + L Q
Sbjct: 242 LERFAKLGLQIYITEMDVRIPLSGSEDYYLKKQ 274
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.5
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 182 STKKGNTALHIAALDSLVTDIASS-AITDAT 211
+ KK +L + A DS A + AI AT
Sbjct: 21 ALKKLQASLKLYADDS-----APALAI-KAT 45
Score = 26.1 bits (56), Expect = 6.6
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 9/33 (27%)
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
KKL L ++ + +A LA K T+
Sbjct: 23 KKLQASLKLYADD------SAPALAIK---ATM 46
>1rhc_A F420-dependent alcohol dehydrogenase; (alpha, beta)8 barrel,
oxidoreductase; HET: F42; 1.80A {Methanoculleus
thermophilus} SCOP: c.1.16.3
Length = 330
Score = 27.0 bits (60), Expect = 5.5
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 80 HLDKLRELLEAGVD-INTSNASDPNTSFLRAAR 111
+ ++ EAG++ N+S + +
Sbjct: 290 MIKEIERFKEAGINHFCLGNSSPDVNFGIDIFK 322
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 26.7 bits (60), Expect = 5.8
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 14/62 (22%)
Query: 81 LDKLRELLEAGVDI----NTSNASDPNTSFLRAARAGH----------LDKLRELLEAGV 126
L+ +EAG DI N S + S + + + V
Sbjct: 203 LEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETV 262
Query: 127 DI 128
D+
Sbjct: 263 DV 264
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor
antagonist, phosphatase serine kinase, ATPase, unknown
function; 2.60A {Mycobacterium tuberculosis}
Length = 399
Score = 26.6 bits (59), Expect = 7.5
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 67 DPNTSFLRAARAGHL 81
D + + AGH
Sbjct: 128 DFTSGEFQYCTAGHP 142
Score = 26.6 bits (59), Expect = 7.5
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 101 DPNTSFLRAARAGHL 115
D + + AGH
Sbjct: 128 DFTSGEFQYCTAGHP 142
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 26.5 bits (59), Expect = 8.0
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 9/92 (9%)
Query: 46 RQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTS 105
+ + L Y G+ KL LL+ V + + + P+
Sbjct: 77 AESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDRE 136
Query: 106 FLRAAR---------AGHLDKLRELLEAGVDI 128
+ R A ++ R + AG D
Sbjct: 137 VIARLRRAGTLTLVTATTPEEARAVEAAGADA 168
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A
beta-lactamase fold, transcription regulation,
beta-lactamase induction, transcription; 1.80A
{Streptomyces cacaoi}
Length = 318
Score = 26.5 bits (58), Expect = 8.8
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
L R G +D +++ + P + L R + +LL ++
Sbjct: 57 TLERIRLGEVD-----GAQQIEVAPGRITTPGPTGLSRFRHPARVAVDDLLYLSTSVSDG 111
Query: 132 NAT 134
A+
Sbjct: 112 TAS 114
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 26.5 bits (58), Expect = 9.1
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 24 RKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVIS---LEPCYDCYSDPNTSFLRAARAGH 80
E + +++ AI A + Q I ++S ++P D + +
Sbjct: 393 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT---- 448
Query: 81 LDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
LD L +L+ G + + N + +AG ++K+ +
Sbjct: 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ 491
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 26.0 bits (58), Expect = 9.6
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 26/82 (31%)
Query: 73 LRAARAGH------------LDKLRELLEAGVDI----NTSNASDPNTSFLRAARAGH-- 114
+RAAR L + + EAG D+ N T+ + A+
Sbjct: 187 VRAARQAADFALKVEVECSSLQEAVQAAEAGADLVLLDNFKPEELHPTATVLKAQFPSVA 246
Query: 115 --------LDKLRELLEAGVDI 128
LD L + +D+
Sbjct: 247 VEASGGITLDNLPQFCGPHIDV 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.345
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,285,393
Number of extensions: 198670
Number of successful extensions: 2120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1375
Number of HSP's successfully gapped: 381
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)