Query psy10606
Match_columns 128
No_of_seqs 103 out of 421
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:40:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00117 LU Ly-6 antigen / uPA 98.8 4E-08 8.7E-13 62.1 6.8 75 3-101 1-79 (79)
2 smart00134 LU Ly-6 antigen / u 98.5 3.5E-07 7.6E-12 57.9 6.1 72 3-99 1-79 (79)
3 PF00021 UPAR_LY6: u-PAR/Ly-6 98.3 2.9E-06 6.3E-11 51.7 6.3 73 5-99 1-77 (77)
4 PF01064 Activin_recp: Activin 98.1 6.5E-06 1.4E-10 52.3 4.9 74 3-103 1-80 (83)
5 PF00087 Toxin_1: Snake toxin; 98.1 2E-05 4.3E-10 48.1 6.7 43 47-99 20-63 (63)
6 cd00206 snake_toxin Snake toxi 97.9 2.8E-05 6.1E-10 47.6 5.3 63 3-99 1-64 (64)
7 PF05444 DUF753: Protein of un 97.3 0.00042 9E-09 49.1 4.7 74 6-102 1-77 (152)
8 PF06579 Ly-6_related: Caenorh 97.1 0.0016 3.5E-08 45.2 5.4 55 47-101 44-129 (129)
9 KOG3653|consensus 95.4 0.13 2.9E-06 42.9 8.6 56 47-102 66-129 (534)
10 PF02988 PLA2_inh: Phospholipa 94.5 0.23 5.1E-06 31.9 6.3 75 4-100 2-83 (83)
11 KOG2052|consensus 94.4 0.41 8.8E-06 39.9 9.0 53 47-100 53-109 (513)
12 PF05444 DUF753: Protein of un 93.8 0.25 5.4E-06 34.8 5.9 52 2-72 82-133 (152)
13 PF01684 ET: ET module; Inter 86.7 2.9 6.2E-05 26.8 5.3 53 48-102 22-81 (82)
14 PF08917 ecTbetaR2: Transformi 59.1 55 0.0012 22.4 6.4 56 47-102 35-101 (118)
15 PF11052 Tr-sialidase_C: Trans 44.9 36 0.00078 16.8 2.5 15 110-124 10-24 (25)
16 PF11027 DUF2615: Protein of u 44.0 45 0.00097 22.3 3.7 6 93-98 32-37 (103)
17 PF06211 BAMBI: BMP and activi 36.5 18 0.0004 24.2 0.9 39 62-101 61-103 (107)
18 PF01307 Plant_vir_prot: Plant 31.8 1.5E+02 0.0033 19.6 4.8 18 86-105 53-70 (104)
19 PF08041 PetM: PetM family of 26.0 1.1E+02 0.0024 15.9 2.8 18 108-125 11-28 (31)
20 PF05545 FixQ: Cbb3-type cytoc 25.5 99 0.0022 17.2 2.7 16 110-125 16-31 (49)
21 PTZ00459 mucin-associated surf 20.2 1.2E+02 0.0026 23.8 3.0 19 94-113 261-279 (291)
22 COG4736 CcoQ Cbb3-type cytochr 20.2 1.4E+02 0.0031 17.9 2.7 16 110-125 16-31 (60)
23 PRK05585 yajC preprotein trans 20.1 1.6E+02 0.0035 19.5 3.2 13 110-122 21-33 (106)
No 1
>cd00117 LU Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these domains is similar to that of snake venom neurotoxins.
Probab=98.76 E-value=4e-08 Score=62.13 Aligned_cols=75 Identities=23% Similarity=0.495 Sum_probs=49.7
Q ss_pred ceEEecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEeC----CceEEEEceecCcccCcccc
Q psy10606 3 IVCYQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKIY----SKRRVVRGCGYINEERDDCY 78 (128)
Q Consensus 3 L~CY~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~~----g~~~v~R~C~~~~~~~~~C~ 78 (128)
|+||+|.+..+..|..+ ++|+.. ..+|.|.+..+. ....+.|+|+........
T Consensus 1 L~C~~C~~~~~~~C~~~--------~~C~~~-------------~~~C~~~~~~~~~~~~~~~~~~rgC~~~C~~~~~-- 57 (79)
T cd00117 1 LECYSCTGVSTSSCSTE--------TNCPSP-------------DDQCLTAVATVIEESVRLSLVVRGCASDCPFTNV-- 57 (79)
T ss_pred CccCcCCCCCCCCCCCC--------CccCCC-------------CCEeeEEEEEEEeeccccceEECcccCCCCCCCc--
Confidence 78999988656688753 478852 778999877643 245688999995443210
Q ss_pred cccccCCceeEEEeeCCCCCCCC
Q psy10606 79 RRTGTFDVDSTYCACKGDICNGS 101 (128)
Q Consensus 79 ~~~~~~~~~~~~C~C~~D~CN~a 101 (128)
...+........| |++|+||++
T Consensus 58 ~~~~~~~~~~~~C-C~tD~CN~~ 79 (79)
T cd00117 58 FGQLSITFLKVSC-CQEDLCNAA 79 (79)
T ss_pred cCccccceEeeee-CCCCccCCC
Confidence 0001112345678 999999985
No 2
>smart00134 LU Ly-6 antigen / uPA receptor -like domain. Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.
Probab=98.52 E-value=3.5e-07 Score=57.88 Aligned_cols=72 Identities=24% Similarity=0.568 Sum_probs=46.4
Q ss_pred ceEEecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEe--CC-ceEEEEcee--cCcccCccc
Q psy10606 3 IVCYQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKI--YS-KRRVVRGCG--YINEERDDC 77 (128)
Q Consensus 3 L~CY~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~--~g-~~~v~R~C~--~~~~~~~~C 77 (128)
|+||.|.+..+..|.. .++|+.. ..+|.|++..+ .+ ...++|+|+ ........
T Consensus 1 L~C~~C~~~~~~~C~~--------~~~C~~~-------------~~~C~~~~~~~~~~~~~~~~~rgC~~~~~Cp~~~~- 58 (79)
T smart00134 1 LQCYSCTGNPDSSCSS--------EEECRSP-------------DDVCLTVVAEVISGSVGSVVYKGCATSPICPGSHS- 58 (79)
T ss_pred CcceecCCcCCCCCCC--------cceeCCC-------------CCEeEEEEEEEEecCCCceEEcCccCCCCCCCCcc-
Confidence 6899998876667865 3569852 78899886542 22 567899999 54332211
Q ss_pred ccccccCC--ceeEEEeeCCCCCC
Q psy10606 78 YRRTGTFD--VDSTYCACKGDICN 99 (128)
Q Consensus 78 ~~~~~~~~--~~~~~C~C~~D~CN 99 (128)
..+.+. ....+| |++|+||
T Consensus 59 --~~~~~~~~~~~~~C-C~tDlCN 79 (79)
T smart00134 59 --YEIHLTIANLKVSC-CQTDLCN 79 (79)
T ss_pred --ccccccEEEEeeEe-cCCCCCC
Confidence 011111 234577 9999999
No 3
>PF00021 UPAR_LY6: u-PAR/Ly-6 domain omitted due to poor similarity.; InterPro: IPR001526 CD59 (also called 1F-5Ag, H19, HRF20, MACIF, MIRL, P-18 or protectin) inhibits formation of membrane attack complex (MAC), thus protecting cells from complement mediated lysis. It has a signalling role, as a GPI-anchored molecule, in T cell activation and appears to have some role in cell adhesion through CD2 (controversial). CD59 associates with C9, inhibiting incorporation into C5b-8 preventing terminal steps in polymerisation of the (MAC) in plasma membranes. Genetic defects in GPI-anchor attachment that cause a reduction or loss of both CD59 and CD55 on erythrocytes produce the symptoms of the disease paroxysmal nocturnal haemoglobinuria (PNH). A variety of GPI-linked cell-surface glycoproteins are composed of one or more copies of a conserved domain of about 100 amino-acid residues [], []. Among these proteins, U-PAR contains three tandem copies of the domain, while all the others are made up of a single domain. As shown in the following schematic, this conserved domain contains 10 cysteine residues involved in five disulphide bonds - in U-PAR, the first copy of the domain lacks the fourth disulphide bond. +------+ +------------------------+ +---+ | | | | | | xCxxCxxxxxxCxxxxxCxxxxxCxxxxxxxxxxxxxxxxxxCxxxxCxxxxxxxxxxxxxxCCxxxCxxxxxxxx | | | | +---------------------+ +--------------+ 'C': conserved cysteine involved in a disulphide bond. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; PDB: 2I9B_H 1YWH_E 3BT2_U 2FD6_U 3U74_U 3BT1_U 3U73_U 2L03_A 3LAQ_V 2J8B_A ....
Probab=98.31 E-value=2.9e-06 Score=51.74 Aligned_cols=73 Identities=26% Similarity=0.498 Sum_probs=46.5
Q ss_pred EEecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEeC--C--ceEEEEceecCcccCcccccc
Q psy10606 5 CYQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKIY--S--KRRVVRGCGYINEERDDCYRR 80 (128)
Q Consensus 5 CY~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~~--g--~~~v~R~C~~~~~~~~~C~~~ 80 (128)
||+|.+..+..|.. .++|+.. ..+|..++..+. + ...++|+|+....-...=...
T Consensus 1 C~~C~~~~~~~C~~--------~~~C~~~-------------~~~C~~~~~~~~~g~~~~~~~~kgC~~~~~C~~~~~~~ 59 (77)
T PF00021_consen 1 CYSCYSPSSSSCSG--------EVTCPGS-------------EDVCYTATVTVTSGGNSVTLVSKGCATQSSCRFLSDFS 59 (77)
T ss_dssp EEEEECSTTTTSCT--------EEEECTT-------------TSEEEEEEEEEETTTCCEEEEEEEEEETTCCSEEEEEE
T ss_pred CCcccCCCCCCCCC--------CCCcCCC-------------CCeeEEEEEEeeecccCceEEEeeccccCCcccccccc
Confidence 89999987788975 2789952 678998877532 3 467889999543311000001
Q ss_pred cccCCceeEEEeeCCCCCC
Q psy10606 81 TGTFDVDSTYCACKGDICN 99 (128)
Q Consensus 81 ~~~~~~~~~~C~C~~D~CN 99 (128)
..........| |++|+||
T Consensus 60 ~~~~~~~~~~C-C~~dlCN 77 (77)
T PF00021_consen 60 NGGIIKVSVSC-CNTDLCN 77 (77)
T ss_dssp SSSEECEEEEE-ESSTTTT
T ss_pred ccceeEEEEEe-CCCCCCC
Confidence 11112235688 9999999
No 4
>PF01064 Activin_recp: Activin types I and II receptor domain; InterPro: IPR000472 Transforming growth factor-beta (TGF-beta) forms a family with other growth factors described in PDOC00223 from PROSITEDOC. The receptors for most of the members of this growth factor family are related. These proteins are receptor-type kinases of Ser/Thr type PDOC00100 from PROSITEDOC), which have a single transmembrane domain and a specific hydrophilic Cys-rich ligand-binding domain [, , ]. The C-terminal part of the extracellular domain is conserved. Some of the receptors of this family contain subclass-specific N-terminal extensions of this homology domain. The type I receptors also possess 7 extracellular residues preceding the cysteine box.; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005024 transforming growth factor beta-activated receptor activity, 0016020 membrane; PDB: 3EVS_C 1BTE_A 1LX5_B 2GOO_C 2HLR_A 4FAO_W 2H64_C 2H62_D 1S4Y_C 1NYU_C ....
Probab=98.10 E-value=6.5e-06 Score=52.25 Aligned_cols=74 Identities=26% Similarity=0.650 Sum_probs=51.9
Q ss_pred ceEEecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEeCC--ceEEEEceecCcccC----cc
Q psy10606 3 IVCYQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKIYS--KRRVVRGCGYINEER----DD 76 (128)
Q Consensus 3 L~CY~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~~g--~~~v~R~C~~~~~~~----~~ 76 (128)
|+|| |++. .|.+. ...|.. ..+|.+.+...++ ...+.|||....... ..
T Consensus 1 l~C~-C~~~---~C~~~-------n~~C~t--------------~~~Cf~~~~~~~~~~~~~~~~GC~~~~~~~~~~~~~ 55 (83)
T PF01064_consen 1 LKCY-CDSD---DCNET-------NQTCET--------------GGFCFTSWEQDNGGGVEIVKKGCWSNEEDCPLCRNQ 55 (83)
T ss_dssp EEEE-EETT---CHCTT-------TEEEEE--------------SCEEEEEEEEETTESEEEEEEEEEESTGGGTTTSSS
T ss_pred CEeE-eCcc---cCCCC-------CCEeCC--------------CCEEEEEEEEeeccceeEEEcCccCCccCcceecce
Confidence 7899 9976 37642 145663 6889999888776 567889999876643 35
Q ss_pred cccccccCCceeEEEeeCCCCCCCCCC
Q psy10606 77 CYRRTGTFDVDSTYCACKGDICNGSPS 103 (128)
Q Consensus 77 C~~~~~~~~~~~~~C~C~~D~CN~a~~ 103 (128)
|..... .....+|.|++|+||+...
T Consensus 56 C~~~~~--~~~~~~CC~~~D~CN~~~~ 80 (83)
T PF01064_consen 56 CRSSSS--PSSVVFCCCSGDFCNSNLS 80 (83)
T ss_dssp EEECSS--STCEEEEEESSTTGGGSEE
T ss_pred eeccCC--CCCeEEECCCCCccCCCCC
Confidence 765322 2567889668999998643
No 5
>PF00087 Toxin_1: Snake toxin; InterPro: IPR003571 Snake toxins belong to a family of proteins [] which groups short and long neurotoxins, cytotoxins and short toxins, as well as a other miscellaneous venom peptides. Most of these toxins act by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and prevent the binding of acetylcholine, thereby blocking the excitation of muscles. Snake toxins are proteins that consist of sixty to seventy five amino acids. Among the invariant residues are eight cysteines all involved in disulphide bonds. The structure is small, disulphide-rich, nearly all beta sheet.; GO: 0005576 extracellular region; PDB: 3NEQ_B 2H5F_A 3PLC_A 1NOR_A 1UG4_A 1FFJ_A 1CCQ_A 1CB9_A 1VB0_A 1ONJ_A ....
Probab=98.10 E-value=2e-05 Score=48.14 Aligned_cols=43 Identities=30% Similarity=0.490 Sum_probs=30.9
Q ss_pred CCceE-EEEEEeCCceEEEEceecCcccCcccccccccCCceeEEEeeCCCCCC
Q psy10606 47 PVICR-KIIQKIYSKRRVVRGCGYINEERDDCYRRTGTFDVDSTYCACKGDICN 99 (128)
Q Consensus 47 ~~~C~-Ki~~~~~g~~~v~R~C~~~~~~~~~C~~~~~~~~~~~~~C~C~~D~CN 99 (128)
...|. |+........+|+|||+...... . ......| |.+|.||
T Consensus 20 e~~Cy~k~~~~~~~~~~~~rGCa~tCP~~------~---~~~~v~C-C~TD~CN 63 (63)
T PF00087_consen 20 ENICYKKTWMDHPRGMRVERGCAATCPTP------K---PGEKVKC-CSTDKCN 63 (63)
T ss_dssp SSEEEEEEEEETSTEEEEEEEEESSSSSS------B---SSEEEEE-ESSTTTT
T ss_pred cCeeEEEEEecCCCCceEecchhccCcCC------C---CCCeEEE-cCCCCCC
Confidence 77898 55555446788999999865432 1 1345678 9999999
No 6
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=97.94 E-value=2.8e-05 Score=47.58 Aligned_cols=63 Identities=30% Similarity=0.490 Sum_probs=41.6
Q ss_pred ceEEecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEe-CCceEEEEceecCcccCccccccc
Q psy10606 3 IVCYQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKI-YSKRRVVRGCGYINEERDDCYRRT 81 (128)
Q Consensus 3 L~CY~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~-~g~~~v~R~C~~~~~~~~~C~~~~ 81 (128)
|.||.|.+. .+.. .+.|+.. +..|.|..... ....++.|||+.......
T Consensus 1 ~~C~~~~~~---~~~~--------~~tC~~g-------------e~~Cyk~~~~~~~~g~~i~rGCa~tCP~~~------ 50 (64)
T cd00206 1 LTCYNCPSP---FPFT--------TETCPDG-------------ENICYKKSWKDTPRGVRIERGCAATCPKVK------ 50 (64)
T ss_pred CCccCCCCC---CCCc--------ceeCCcc-------------cCccceeEEEcCCCCCEEEccccCcCcCCC------
Confidence 568888755 3332 4668741 67898774433 445679999999755321
Q ss_pred ccCCceeEEEeeCCCCCC
Q psy10606 82 GTFDVDSTYCACKGDICN 99 (128)
Q Consensus 82 ~~~~~~~~~C~C~~D~CN 99 (128)
. + ....| |.+|.||
T Consensus 51 -~-~-~~v~C-C~TD~CN 64 (64)
T cd00206 51 -P-G-EYVTC-CTTDKCN 64 (64)
T ss_pred -C-C-cceEe-cCCCCCC
Confidence 1 1 45688 9999999
No 7
>PF05444 DUF753: Protein of unknown function (DUF753); InterPro: IPR008472 This entry contains sequences which are repeated in several uncharacterised proteins from Drosophila melanogaster.
Probab=97.32 E-value=0.00042 Score=49.12 Aligned_cols=74 Identities=31% Similarity=0.674 Sum_probs=45.3
Q ss_pred EecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEeCCceEEEEceecCccc--Cccccccccc
Q psy10606 6 YQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKIYSKRRVVRGCGYINEE--RDDCYRRTGT 83 (128)
Q Consensus 6 Y~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~~g~~~v~R~C~~~~~~--~~~C~~~~~~ 83 (128)
|+|+|..+++|.++ .......+.|+.. ...|+.++. +...++|||...... ...|....
T Consensus 1 ~~C~s~~~~~C~~~-~~~~~~~~~C~~~-------------~~~C~t~~~---~~~~~~RGC~~~~~~~~~~~C~~~~-- 61 (152)
T PF05444_consen 1 YSCDSCEDPNCTDP-DPSTSATEECPQQ-------------DDQCYTRFD---DDGTTIRGCLSDLPAEEQSSCSAGN-- 61 (152)
T ss_pred CCccCCcCCCCCCC-CCCceecccCCCC-------------CCCCEEEEe---CCCceEcCchhhcchhhcccccCCC--
Confidence 67888879999322 2223335788852 344987763 333499999987542 22554221
Q ss_pred CCceeEEE-eeCCCCCCCCC
Q psy10606 84 FDVDSTYC-ACKGDICNGSP 102 (128)
Q Consensus 84 ~~~~~~~C-~C~~D~CN~a~ 102 (128)
...| .|.+++||.+.
T Consensus 62 ----~~~C~~C~~~~CN~~~ 77 (152)
T PF05444_consen 62 ----DANCVTCSGDGCNNAV 77 (152)
T ss_pred ----CCcccCcCCCCCCCcc
Confidence 1267 88888888854
No 8
>PF06579 Ly-6_related: Caenorhabditis elegans ly-6-related protein; InterPro: IPR010558 This family consists of several Caenorhabditis elegans specific ly-6-related HOT and ODR proteins. These proteins are involved in the olfactory system. Odr-2 mutants are known to be defective in the ability to chemotax to odorants that are recognised by the two AWC olfactory neurons. Odr-2 encodes a membrane-associated protein related to the Ly-6 superfamily of GPI-linked signalling proteins [].
Probab=97.07 E-value=0.0016 Score=45.23 Aligned_cols=55 Identities=33% Similarity=0.609 Sum_probs=35.5
Q ss_pred CCceEEEEEE--eCC---ceEEEEceecC----cccC----------ccccccc------------ccCCceeEEEeeCC
Q psy10606 47 PVICRKIIQK--IYS---KRRVVRGCGYI----NEER----------DDCYRRT------------GTFDVDSTYCACKG 95 (128)
Q Consensus 47 ~~~C~Ki~~~--~~g---~~~v~R~C~~~----~~~~----------~~C~~~~------------~~~~~~~~~C~C~~ 95 (128)
++.|+.+++. +.| ...+||||+.. +.++ +.|..-. ......+..|.|.+
T Consensus 44 ~s~Cvtl~e~~~~~gg~~~~~yIRGC~~~I~~~G~n~t~t~~~~~~~~~C~~~~~s~Lf~~~~~~~~~~~~~v~vCsC~g 123 (129)
T PF06579_consen 44 SSICVTLFEPLDIFGGTRGFGYIRGCLDSILRHGFNDTITLSFLDRRDICRRLRLSQLFPPGRRREHPSDSTVQVCSCYG 123 (129)
T ss_pred CchheeeEeccccccccccccEEEcCHHHHHHhCCCCchHHHHhcCCCeeeeccHHHhcCcccccccCCCCeEEEEEECC
Confidence 4669999876 233 46789999953 1111 2465311 11235688999999
Q ss_pred CCCCCC
Q psy10606 96 DICNGS 101 (128)
Q Consensus 96 D~CN~a 101 (128)
|+||+|
T Consensus 124 d~CN~s 129 (129)
T PF06579_consen 124 DRCNGS 129 (129)
T ss_pred CccCCC
Confidence 999986
No 9
>KOG3653|consensus
Probab=95.36 E-value=0.13 Score=42.92 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=35.5
Q ss_pred CCceEEEEEEeCCce-EEEEceecCcc------cCcccccccccCC-ceeEEEeeCCCCCCCCC
Q psy10606 47 PVICRKIIQKIYSKR-RVVRGCGYINE------ERDDCYRRTGTFD-VDSTYCACKGDICNGSP 102 (128)
Q Consensus 47 ~~~C~Ki~~~~~g~~-~v~R~C~~~~~------~~~~C~~~~~~~~-~~~~~C~C~~D~CN~a~ 102 (128)
...|..+.....|.. .+..||..... +...|........ ....+|.|.+|.||.-.
T Consensus 66 ~~~C~avW~~t~~~~~~v~qGC~~~~~D~~~c~~~~eCv~s~~~~~g~t~~~CcCs~~~CN~n~ 129 (534)
T KOG3653|consen 66 GRHCFAVWNKTSGTIEVVKQGCWSHITDDINCEDSSECVVSAEPPPGQTLYFCCCSTDFCNANF 129 (534)
T ss_pred CCceEEEeeccCCceeEEeecCccccCCccccccccccccCCCCCCCCeEEEEecCCCcccCCc
Confidence 448998877655554 55689995321 1225655443332 24789999999999643
No 10
>PF02988 PLA2_inh: Phospholipase A2 inhibitor; InterPro: IPR004126 Proteins in this entry inhibit basic phospholipase A2 isozymes in snake's venom [, ].; GO: 0004859 phospholipase inhibitor activity, 0005576 extracellular region
Probab=94.49 E-value=0.23 Score=31.90 Aligned_cols=75 Identities=20% Similarity=0.469 Sum_probs=45.7
Q ss_pred eEEecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEe--CCc--eEEEEceecCcccC-cccc
Q psy10606 4 VCYQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKI--YSK--RRVVRGCGYINEER-DDCY 78 (128)
Q Consensus 4 ~CY~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~--~g~--~~v~R~C~~~~~~~-~~C~ 78 (128)
.|..|.+. .++|.-+ ..+|... ...|.+++..+ .|. ..+.|+|.....-. +.=.
T Consensus 2 ~CEvC~~~-G~~C~G~-------~~tC~~~-------------eDtC~~~~~E~~~~~~s~~~~~K~C~~S~~C~~~~~~ 60 (83)
T PF02988_consen 2 SCEVCHGS-GKDCSGK-------MKTCEDG-------------EDTCVTVVTEVSSAGVSFRTTHKGCFSSSDCHLGYVS 60 (83)
T ss_pred CcceecCc-CCCCCCC-------eeEcCCC-------------CCEEEEEEEEeccCCeEEEEEEecccCccccCCCCEE
Confidence 58889987 4788654 5678852 67799997764 233 34579999864411 1000
Q ss_pred cccc--cCCceeEEEeeCCCCCCC
Q psy10606 79 RRTG--TFDVDSTYCACKGDICNG 100 (128)
Q Consensus 79 ~~~~--~~~~~~~~C~C~~D~CN~ 100 (128)
...+ .+.....+| |.+|+||.
T Consensus 61 ~n~g~~~y~rs~~~C-C~gd~C~~ 83 (83)
T PF02988_consen 61 TNMGHGDYMRSRIHC-CQGDGCNT 83 (83)
T ss_pred EecCCCCEEEeeeee-ECCCccCC
Confidence 0111 122345678 99999984
No 11
>KOG2052|consensus
Probab=94.43 E-value=0.41 Score=39.92 Aligned_cols=53 Identities=26% Similarity=0.477 Sum_probs=35.4
Q ss_pred CCceEEEEEE-eCCceEEEEceecCcccCcccccc---cccCCceeEEEeeCCCCCCC
Q psy10606 47 PVICRKIIQK-IYSKRRVVRGCGYINEERDDCYRR---TGTFDVDSTYCACKGDICNG 100 (128)
Q Consensus 47 ~~~C~Ki~~~-~~g~~~v~R~C~~~~~~~~~C~~~---~~~~~~~~~~C~C~~D~CN~ 100 (128)
...|.+.+.. .+|+....|||....+..-.|... ..+...+..+| |++|+||.
T Consensus 53 ~g~C~~s~~~~~~g~~~~~~gC~~~~~~~~~~~~~~~~~~s~~~~~~~C-C~~d~CN~ 109 (513)
T KOG2052|consen 53 DGACFVSVEENDDGKEQHHRGCMTLEESLPRCNPFKCAHSSPDFRNIEC-CYGDYCNN 109 (513)
T ss_pred cCeEEEEEEecCCCceEEEecccccccccccCCCccccCCCCCceEEEe-cCcccccc
Confidence 6789888874 556778899999865422122211 11224678899 99999994
No 12
>PF05444 DUF753: Protein of unknown function (DUF753); InterPro: IPR008472 This entry contains sequences which are repeated in several uncharacterised proteins from Drosophila melanogaster.
Probab=93.76 E-value=0.25 Score=34.85 Aligned_cols=52 Identities=27% Similarity=0.432 Sum_probs=33.0
Q ss_pred cceEEecCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCceEEEEEEeCCceEEEEceecCcc
Q psy10606 2 SIVCYQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEYQTPVICRKIIQKIYSKRRVVRGCGYINE 72 (128)
Q Consensus 2 aL~CY~C~S~~~~~C~~~f~~~~~~~~~C~~~~~~~~l~~~~~~~~~~C~Ki~~~~~g~~~v~R~C~~~~~ 72 (128)
.|+||+|. .+++|..+ .......|+... ....|...+. ....|.|||...-.
T Consensus 82 ~~~C~qC~--~~~~C~~~---~~~~~~~C~~~~-----------~~d~Cyt~~~---~~~~~~RGC~s~l~ 133 (152)
T PF05444_consen 82 RLSCYQCT--DDSDCVSS---DSSTAKPCPNYS-----------EDDQCYTRVD---DGGVVERGCLSDLE 133 (152)
T ss_pred CCEeeeCC--CCCCCCCC---CCcCcCcCcCCC-----------CCCcCEEEEe---eCCEEEeCCCCccc
Confidence 47899999 67899211 123356677421 1556877765 33458999998754
No 13
>PF01684 ET: ET module; InterPro: IPR002603 The proteins in this entry have no known function, and are found in Caenorhabditis elegans and in Caenorhabditis briggsae. Each repeat contains 8-10 conserved cysteines that probably form 4-5 disulphide bridges. By inspection of the conservation of cysteines it looks like cysteines 1, 2, 3, 4, 9 and 10 are always present and that sometimes the pair 5 and 8 or the pair 6 and 7 are missing. This suggests that cysteines 5/8 and 6/7 make disulphide bridges.
Probab=86.66 E-value=2.9 Score=26.77 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=37.7
Q ss_pred CceEEEEE-EeCCceEEEEceecCcc----cC-cccccccccCCceeEEEeeC-CCCCCCCC
Q psy10606 48 VICRKIIQ-KIYSKRRVVRGCGYINE----ER-DDCYRRTGTFDVDSTYCACK-GDICNGSP 102 (128)
Q Consensus 48 ~~C~Ki~~-~~~g~~~v~R~C~~~~~----~~-~~C~~~~~~~~~~~~~C~C~-~D~CN~a~ 102 (128)
..|.++.. .++|...++=.|.+... +. +.|... ..+..++.|.|+ +|.||...
T Consensus 22 G~CaSvs~~~~ng~~~t~y~C~P~~vC~~L~l~n~C~~i--~~~~~vtgCCC~~~dnC~~p~ 81 (82)
T PF01684_consen 22 GQCASVSITTYNGHNVTLYTCDPTSVCRSLNLNNSCNTI--EGGREVTGCCCNNSDNCNDPT 81 (82)
T ss_pred CEEEEEEEEeECCceEEEEEechHHHHhhhcccCccccc--CCCCcEEEEECCCCccccCCC
Confidence 46999988 89998888889998654 11 256433 233357888788 99999753
No 14
>PF08917 ecTbetaR2: Transforming growth factor beta receptor 2 ectodomain; InterPro: IPR015013 The Transforming growth factor beta receptor 2 ectodomain is a compact fold consisting of nine beta-strands and a single helix stabilised by a network of six intra strand disulphide bonds. The folding topology includes a central five-stranded antiparallel beta-sheet, eight-residues long at its centre, covered by a second layer consisting of two segments of two-stranded antiparallel beta-sheets (beta1-beta4, beta3-beta9) []. ; GO: 0005026 transforming growth factor beta receptor activity, type II, 0005524 ATP binding, 0046872 metal ion binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 1KTZ_B 3KFD_E 1M9Z_A 2PJY_B 1PLO_A 1KS6_A.
Probab=59.11 E-value=55 Score=22.37 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=39.2
Q ss_pred CCceEEEEEEeCCceEEEEceecCccc----------Ccccccccc-cCCceeEEEeeCCCCCCCCC
Q psy10606 47 PVICRKIIQKIYSKRRVVRGCGYINEE----------RDDCYRRTG-TFDVDSTYCACKGDICNGSP 102 (128)
Q Consensus 47 ~~~C~Ki~~~~~g~~~v~R~C~~~~~~----------~~~C~~~~~-~~~~~~~~C~C~~D~CN~a~ 102 (128)
.-+|+.|.-+.++...+.--|--...+ ...|.++.- ..+.....|.|.+|.||.--
T Consensus 35 eEVCvAiWRk~~~nitieTlCHdP~~~l~G~~l~d~ns~~C~Mkek~~~g~~~~~CsC~~eECNd~l 101 (118)
T PF08917_consen 35 EEVCVAIWRKNDENITIETLCHDPKLPLHGFMLEDYNSSKCIMKEKKSEGGTFFMCSCSGEECNDKL 101 (118)
T ss_dssp T-EEEEEEEEETTEEEEEEEEE-TTSBCTTCB-TTTTCSSEEEEEEEETTCEEEEEEESSTTCCCEE
T ss_pred ceEEEEEEEECCCCeEEEEeecCCCCcccceEecCCCCCeeEEEeeeCCCCcEEEEecCccccCCeE
Confidence 678999999888887887888854321 126776542 23567889999999999543
No 15
>PF11052 Tr-sialidase_C: Trans-sialidase of Trypanosoma hydrophobic C-terminal; InterPro: IPR021287 This is a highly conserved region, of about 50aa, that is the very C terminus of a number of more diverse proteins from Trypanosoma cruzi. All members of the family are annotated putatively as being trans-sialidase but this appears to be a diverse group.
Probab=44.89 E-value=36 Score=16.84 Aligned_cols=15 Identities=27% Similarity=0.155 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHh
Q psy10606 110 LVVTSLLAAVVLLAQ 124 (128)
Q Consensus 110 ll~~~~~~~~~~~~~ 124 (128)
+.++.+++++|-++.
T Consensus 10 l~lLLlLLGLwGfaA 24 (25)
T PF11052_consen 10 LPLLLLLLGLWGFAA 24 (25)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444667776653
No 16
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=44.04 E-value=45 Score=22.27 Aligned_cols=6 Identities=33% Similarity=1.138 Sum_probs=3.7
Q ss_pred eCCCCC
Q psy10606 93 CKGDIC 98 (128)
Q Consensus 93 C~~D~C 98 (128)
|....|
T Consensus 32 CTDteC 37 (103)
T PF11027_consen 32 CTDTEC 37 (103)
T ss_pred cCcchh
Confidence 566666
No 17
>PF06211 BAMBI: BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain; InterPro: IPR009345 This family consists of several eukaryotic BMP and activin membrane-bound inhibitor (BAMBI) proteins. Members of the transforming growth factor-beta (TGF-beta) superfamily, including TGF-beta, bone morphogenetic proteins (BMPs), activins and nodals, are vital for regulating growth and differentiation. BAMBI is related to TGF-beta-family type I receptors but lacks an intracellular kinase domain. BAMBI is co-expressed with the ventralising morphogen BMP4 during Xenopus embryogenesis and requires BMP signalling for its expression. The protein stably associates with TGF-beta-family receptors and inhibits BMP and activin as well as TGF-beta signalling [].
Probab=36.53 E-value=18 Score=24.21 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=22.5
Q ss_pred EEEEceecCcc-cCcccccccc---cCCceeEEEeeCCCCCCCC
Q psy10606 62 RVVRGCGYINE-ERDDCYRRTG---TFDVDSTYCACKGDICNGS 101 (128)
Q Consensus 62 ~v~R~C~~~~~-~~~~C~~~~~---~~~~~~~~C~C~~D~CN~a 101 (128)
...+||.-.-. ..+.|..+.. .+......| |.+|+||--
T Consensus 61 pl~HGCld~~~~~~~~C~~~~~~~~~~~~~~l~C-Ch~DMCNyr 103 (107)
T PF06211_consen 61 PLTHGCLDSLASTADICKSEQAQNHSGCPSPLEC-CHDDMCNYR 103 (107)
T ss_pred cccccccccccCCCCcccCccccccCCCCcccch-hhhhhcccC
Confidence 45688875433 2345653321 112244688 999999954
No 18
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=31.83 E-value=1.5e+02 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=9.1
Q ss_pred ceeEEEeeCCCCCCCCCCCC
Q psy10606 86 VDSTYCACKGDICNGSPSLG 105 (128)
Q Consensus 86 ~~~~~C~C~~D~CN~a~~~~ 105 (128)
..+.|+ ..... ++.....
T Consensus 53 K~I~Y~-~P~~~-~~~~~~~ 70 (104)
T PF01307_consen 53 KSINYN-SPNKL-SSSSSSS 70 (104)
T ss_pred cEEEeC-CCCCC-CcccCCC
Confidence 456665 55555 5444333
No 19
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=25.96 E-value=1.1e+02 Score=15.91 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy10606 108 TSLVVTSLLAAVVLLAQN 125 (128)
Q Consensus 108 ~~ll~~~~~~~~~~~~~~ 125 (128)
+.+++..+.+++++|-.|
T Consensus 11 ~~lvlvGla~Gf~LLkiQ 28 (31)
T PF08041_consen 11 FGLVLVGLALGFVLLKIQ 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhheee
Confidence 346667788888887654
No 20
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=25.50 E-value=99 Score=17.21 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10606 110 LVVTSLLAAVVLLAQN 125 (128)
Q Consensus 110 ll~~~~~~~~~~~~~~ 125 (128)
++++.++.++++++++
T Consensus 16 v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344555555555554
No 21
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=20.24 E-value=1.2e+02 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCcchHHHHH
Q psy10606 94 KGDICNGSPSLGQSTSLVVT 113 (128)
Q Consensus 94 ~~D~CN~a~~~~~~~~ll~~ 113 (128)
+.|. +.|.++..+.+||||
T Consensus 261 ~sd~-sta~sh~tsplllll 279 (291)
T PTZ00459 261 NSDG-STAVSHTTSPLLLLL 279 (291)
T ss_pred Cccc-ccccccccchHHHHH
Confidence 5566 566677667665444
No 22
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.24 E-value=1.4e+02 Score=17.88 Aligned_cols=16 Identities=25% Similarity=0.386 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10606 110 LVVTSLLAAVVLLAQN 125 (128)
Q Consensus 110 ll~~~~~~~~~~~~~~ 125 (128)
+.++.++.++++++++
T Consensus 16 ~~~~l~fiavi~~ayr 31 (60)
T COG4736 16 IAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445566666666654
No 23
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=20.13 E-value=1.6e+02 Score=19.51 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q psy10606 110 LVVTSLLAAVVLL 122 (128)
Q Consensus 110 ll~~~~~~~~~~~ 122 (128)
++++.+++++++|
T Consensus 21 ll~lvii~~i~yf 33 (106)
T PRK05585 21 LLPLVVFFAIFYF 33 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
Done!