RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10606
         (128 letters)



>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA
          {Bacteroides cellulosolvens [TaxId: 35825]}
          Length = 170

 Score = 28.6 bits (64), Expect = 0.16
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 6  YQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHKEY 44
          YQ N  Y+     P+D  +      S +P    LL   +
Sbjct: 33 YQFNIKYNTTYLQPWDTIADEAYTDSTMPDYGTLLQGRF 71


>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate
           dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 297

 Score = 28.8 bits (64), Expect = 0.17
 Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 3/50 (6%)

Query: 54  IQKIYSKRRVVRGCGYINEERDDCYRRTGTFDVDS---TYCACKGDICNG 100
           +Q          G      E    Y    T    S   T+ A    + N 
Sbjct: 99  VQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENE 148


>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans
          [TaxId: 301]}
          Length = 56

 Score = 24.7 bits (54), Expect = 1.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 4  VCYQCNSAYDPRCGDPFDPYSLGT 27
          +C  C   YD   GD  + ++ GT
Sbjct: 6  ICITCGHIYDEALGDEAEGFTPGT 29


>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 53

 Score = 24.3 bits (53), Expect = 1.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 4  VCYQCNSAYDPRCGDPFDPYSLGT 27
          VC  C   YD   GDP +  S GT
Sbjct: 4  VCKICGYIYDEDAGDPDNGISPGT 27


>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum
          [TaxId: 1501]}
          Length = 53

 Score = 24.3 bits (53), Expect = 1.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 4  VCYQCNSAYDPRCGDPFDPYSLGT 27
           C  C   Y+P  GDP +  + GT
Sbjct: 5  TCTVCGYIYNPEDGDPDNGVNPGT 28


>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId:
          55529]}
          Length = 70

 Score = 24.3 bits (53), Expect = 1.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 4  VCYQCNSAYDPRCGDPFDPYSLGT 27
           C  C   Y+P  GD F     GT
Sbjct: 9  ECEACGYIYEPEKGDKFAGIPPGT 32


>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId:
          879]}
          Length = 52

 Score = 23.9 bits (52), Expect = 1.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)

Query: 4  VCYQCNSAYDPRCGDPFDPYSLGT 27
          VC  C   YDP  GDP      GT
Sbjct: 5  VCTVCGYEYDPAKGDPDSGIKPGT 28


>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus
           thermophilus [TaxId: 274]}
          Length = 123

 Score = 25.3 bits (55), Expect = 2.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 62  RVVRGCGYINEERDDCYRRTGTFDVDSTY 90
           RV RG GY+  E+     R     VD+ +
Sbjct: 94  RVDRGVGYVPAEKHGIKDRINAIPVDAVF 122


>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein
          B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
          Length = 171

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 9/43 (20%)

Query: 6  YQCNSAYDPRCGDPFD----PYSLGTVNCSLLPIPENLLHKEY 44
           Q N  YDP    P       Y+  T+     P    +L+ ++
Sbjct: 35 CQLNMKYDPAVLQPVTSSGVAYTKSTM-----PGAGTILNSDF 72


>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A,
          SdbA {Clostridium thermocellum [TaxId: 1515]}
          Length = 162

 Score = 23.6 bits (51), Expect = 7.2
 Identities = 10/37 (27%), Positives = 14/37 (37%)

Query: 6  YQCNSAYDPRCGDPFDPYSLGTVNCSLLPIPENLLHK 42
          +Q N  YDP+     DP +      S  P    +L  
Sbjct: 35 FQVNIVYDPKVLMAVDPETGKEFTSSTFPPGRTVLKN 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 500,043
Number of extensions: 22760
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 18
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.5 bits)