RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10608
(445 letters)
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 639 bits (1651), Expect = 0.0
Identities = 220/352 (62%), Positives = 278/352 (78%), Gaps = 1/352 (0%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
KL+I+G++VESK T+W+D++NPAT EV+ RVP AT E+++AVA+AK A+ WS T ++
Sbjct: 1 LKLFINGEWVESKTTEWLDVYNPATGEVIARVPLATAEEVDAAVAAAKAAFPAWSATPVL 60
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
RQQV+F+ + +++ N+ +LA IT E GKTLADA GDVLRGL+VVE CSIP +++GE
Sbjct: 61 KRQQVMFKFRQLLEENLDELARLITLEHGKTLADARGDVLRGLEVVEFACSIPHLLKGEY 120
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACM 209
L VA+ +D +SYR PLGV AGITPFNFPAMIPLWMFP+AIACGNT V+KPSER PGA M
Sbjct: 121 LENVARGIDTYSYRQPLGVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSERVPGAAM 180
Query: 210 MLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKR 269
L ++L +AG P GV+NV+HG +AVN + DHPDI+A+SFVGS G+YIYER A NGKR
Sbjct: 181 RLAELLQEAGLPDGVLNVVHGGKEAVNALLDHPDIKAVSFVGSTPVGEYIYERAAANGKR 240
Query: 270 VQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-EWLPELKK 328
VQ+ GAKNH V+M DA+ T N LVGAAFGAAGQRCMALS + VG+ EW+P+L +
Sbjct: 241 VQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQRCMALSVAVAVGDEADEWIPKLVE 300
Query: 329 RAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
RA+ LKV AG+ PG D+GPVISP AKERI LI+SGV+EGA L+LDGR +KV
Sbjct: 301 RAKKLKVGAGDDPGADMGPVISPAAKERIEGLIESGVEEGAKLVLDGRGVKV 352
Score = 99.1 bits (248), Expect = 2e-22
Identities = 34/48 (70%), Positives = 38/48 (79%)
Query: 380 VGINVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLW 427
VGINVPIPVPL+ FSF G +GSF G+ HFYGK G FYT+TKTVT W
Sbjct: 431 VGINVPIPVPLAFFSFGGWKGSFFGDLHFYGKDGVRFYTQTKTVTSRW 478
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 522 bits (1347), Expect = 0.0
Identities = 185/350 (52%), Positives = 258/350 (73%)
Query: 31 KLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
+I GKF E + +I + NPATNEV T+V A+ E+++AVASA++ + TW +TS+
Sbjct: 2 NHWIGGKFAEGASGTYIPVTNPATNEVTTKVAFASVDEVDAAVASARETFLTWGQTSLAQ 61
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETL 150
R VL R Q ++K + ++AE IT E GKT +DA GDV RGL+VVE C + ++++GET
Sbjct: 62 RTSVLLRYQALLKEHRDEIAELITAEHGKTHSDALGDVARGLEVVEHACGVNSLLKGETS 121
Query: 151 AGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMM 210
VA +D++S R PLGV AGITPFNFPAMIPLWMFP+AIACGNT V+KPSE+ P A +
Sbjct: 122 TQVATRVDVYSIRQPLGVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPSEKVPSAAVK 181
Query: 211 LVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV 270
L ++ ++AG P GV+NV+HG +AV+ + +HPD++A+SFVGS G+YI+ G+ +GKRV
Sbjct: 182 LAELFSEAGAPDGVLNVVHGDKEAVDRLLEHPDVKAVSFVGSTPIGRYIHTTGSAHGKRV 241
Query: 271 QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPELKKRA 330
Q+ GAKNH V+M DA++ + LVGAA+GAAGQRCMA+S + VG A EW+PE+++RA
Sbjct: 242 QALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQRCMAISAAVLVGAADEWVPEIRERA 301
Query: 331 EALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
E +++ G+ PG ++GP+I+PQAK+R+ SLI G EGA +LLDGR KV
Sbjct: 302 EKIRIGPGDDPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKV 351
Score = 88.8 bits (220), Expect = 6e-19
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 379 KVGINVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLW 427
+VG+NVPIPVPL FSFTG + SF G++H YGKQG +FYT KTVT W
Sbjct: 429 QVGVNVPIPVPLPYFSFTGWKDSFFGDHHIYGKQGTHFYTRGKTVTTRW 477
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 435 bits (1120), Expect = e-148
Identities = 207/347 (59%), Positives = 265/347 (76%)
Query: 34 IDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQ 93
I G FVES+++ +ID+ NPAT EVV++VP T E ++AV++AK+A+ W T I TRQ+
Sbjct: 118 IGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQR 177
Query: 94 VLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGV 153
V+ + Q +I+ NM +LA NIT EQGKTL D+ GD+ RGL+VVE C + T+ GE L V
Sbjct: 178 VMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYLPNV 237
Query: 154 AKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVD 213
+ +D +S R PLGV AGI PFNFPAMIPLWMFPVA+ CGNT ++KPSE+DPGA ++L +
Sbjct: 238 SNGVDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAE 297
Query: 214 MLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSN 273
+ +AG P GV+N++HG +D VN ICD DIRA+SFVGS+ AG +IY R A GKR+QSN
Sbjct: 298 LAMEAGLPDGVLNIVHGTNDTVNAICDDEDIRAVSFVGSNTAGMHIYARAAAKGKRIQSN 357
Query: 274 MGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPELKKRAEAL 333
MGAKNHG+++ DAN TLN L+ A FGAAGQRCMALSTV+FVG+A W +L +RA+AL
Sbjct: 358 MGAKNHGLVLPDANIDATLNALLAAGFGAAGQRCMALSTVVFVGDAKSWEDKLVERAKAL 417
Query: 334 KVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
KV+ G+ P DLGPVIS QAKERI LIQSGVD+GA LLLDGR++ V
Sbjct: 418 KVTCGSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVV 464
Score = 73.6 bits (180), Expect = 5e-14
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 379 KVGINVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDVTHSKAA 438
++GINVPIPVPL FSFTG++ SF G+ +FYGK G F+T+ K VTQ ++ HS +
Sbjct: 542 QIGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVDFFTQIKLVTQKQKD---IHSPFS 598
Query: 439 VSMP 442
+++P
Sbjct: 599 LAIP 602
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 342 bits (879), Expect = e-114
Identities = 129/342 (37%), Positives = 204/342 (59%), Gaps = 6/342 (1%)
Query: 38 FVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFR 97
+V+S +++ I++ NPAT EV+ VP AT ++++AVA+A+ A++ W+KT R +L +
Sbjct: 1 WVDS-SSETIEVINPATGEVIATVPAATAEDVDAAVAAARAAFKAWAKTPPSERAAILLK 59
Query: 98 LQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDM 157
++++ +LAE T E GK LA+A G+V R + + + ++GETL +
Sbjct: 60 AADLLEERRDELAELETLETGKPLAEARGEVPRAIDTLRYYAGLARKLEGETLP-SDPGV 118
Query: 158 DIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQ 217
++ R PLGV ITP+NFP ++ W A+A GNT V+KPSE P ++L ++ +
Sbjct: 119 LAYTRREPLGVVGAITPWNFPLLLAAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEE 178
Query: 218 AGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGA 276
AG PPGV+NV+ G + + + +HPD+ +SF GS + G+ I + AKN KRV +G
Sbjct: 179 AGLPPGVLNVVTGSGSEVGDALVEHPDVDKVSFTGSTEVGRRIAKAAAKNLKRVTLELGG 238
Query: 277 KNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALK 334
KN ++ DA+ + V AFG AGQ C A S + V E++ E++ L + A++LK
Sbjct: 239 KNPLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGS-RLLVHESIYDEFVERLVEAAKSLK 297
Query: 335 VSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
V P TD+GP+IS + +ER+LS I+ +EGA LL G
Sbjct: 298 VGDPLDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGE 339
Score = 41.7 bits (99), Expect = 5e-04
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 380 VGINVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 423
V IN F G + S G GK+G YTETKTV
Sbjct: 418 VWINDYTTGDPEALPFGGFKQSGFG--REGGKEGLEEYTETKTV 459
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 329 bits (846), Expect = e-109
Identities = 130/349 (37%), Positives = 196/349 (56%), Gaps = 5/349 (1%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
KL IDG++V+ I++ NPAT EV+ VP AT ++++AVA+A+ A+E WS+ S
Sbjct: 1 YKLLIDGEWVD--GASTIEVINPATGEVIATVPAATAEDVDAAVAAARAAFEAWSRLSAE 58
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R +L R+ ++++A ++LA IT E GK +++A G++ R + ++GET
Sbjct: 59 ERAAILRRIADLLEARAEELAALITLETGKPISEARGEIARAADFIRYYAEEARRLEGET 118
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACM 209
+ K R PLGV ITP+NFP + W A+A GNT V+KPSE+ P + +
Sbjct: 119 IP-TDKGSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAAGNTVVLKPSEQTPLSAL 177
Query: 210 MLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGK 268
L ++ +AG P GV+NV+ G + + + HPD+ AISF GS G+ I A N K
Sbjct: 178 ALAELAAEAGLPAGVLNVVTGGGAEVGDALVAHPDVDAISFTGSTAVGRAIAAAAAANLK 237
Query: 269 RVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE-AVEWLPELK 327
V +G K+ +++ DA+ ++ V AF AGQRC A S +I E++ L
Sbjct: 238 PVTLELGGKSPAIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDEFVERLV 297
Query: 328 KRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
RA +LKV P TDLGP+IS + +R+ I+ V EGA LL G+
Sbjct: 298 ARAASLKVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGK 346
Score = 40.4 bits (95), Expect = 0.002
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 369 ATLLLDGRNLKVG---INVPIP-VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 424
A R L+ G IN ++ F G + S LG GK G +TE KTVT
Sbjct: 409 ARAFRVARRLEAGMVGINDYTGGADIAYLPFGGVKQSGLG--REGGKYGLEEFTEVKTVT 466
Query: 425 QLWRE 429
Sbjct: 467 IKLGP 471
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 301 bits (773), Expect = 6e-98
Identities = 138/353 (39%), Positives = 203/353 (57%), Gaps = 5/353 (1%)
Query: 33 YIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR 91
YI G++V+S + + D NPA EVV P +T +++++AV +A++A+ W K R
Sbjct: 2 YIGGEWVDSASGETFDSRNPADLEEVVGTFPLSTASDVDAAVEAAREAFPEWRKVPAPRR 61
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLA 151
+ LFR ++K ++LA +T E GK LA+ GDV + + + + GET+
Sbjct: 62 AEYLFRAAELLKKRKEELARLVTREMGKPLAEGRGDVQEAIDMAQYAAGEGRRLFGETVP 121
Query: 152 GVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMML 211
+ D + R P+GV A ITP+NFP IP W A+ CGNT V KP+E P + L
Sbjct: 122 SELPNKDAMTRRQPIGVVALITPWNFPVAIPSWKIFPALVCGNTVVFKPAEDTPACALKL 181
Query: 212 VDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV 270
V++ +AG PPGVVNV+HG + V + +HPD+ +SF GS + G+ I E A+ KRV
Sbjct: 182 VELFAEAGLPPGVVNVVHGRGEEVGEALVEHPDVDVVSFTGSTEVGERIGETCARPNKRV 241
Query: 271 QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKK 328
MG KN ++M DA+ L + +AFG GQRC A S +I V E+V E+L +
Sbjct: 242 ALEMGGKNPIIVMDDADLDLALEGALWSAFGTTGQRCTATSRLI-VHESVYDEFLKRFVE 300
Query: 329 RAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
RA+ L+V G TD+GP+I+ E++L+ + G +EGATLLL G L G
Sbjct: 301 RAKRLRVGDGLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGG 353
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 286 bits (734), Expect = 4e-92
Identities = 129/351 (36%), Positives = 195/351 (55%), Gaps = 7/351 (1%)
Query: 33 YIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR 91
YIDG++V + + NP+ T++VV + +A+ + ++A+A+A A+ W +TS R
Sbjct: 4 YIDGEWVAGGDGE--ENRNPSDTSDVVGKYARASAEDADAAIAAAAAAFPAWRRTSPEAR 61
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLA 151
+L + + ++A ++LA +T E+GKTL +A G+V R Q+ + GETL
Sbjct: 62 ADILDKAGDELEARKEELARLLTREEGKTLPEARGEVTRAGQIFRYYAGEALRLSGETLP 121
Query: 152 GVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMML 211
+++ + R PLGV ITP+NFP IP W A+A GNT V KP+E P + L
Sbjct: 122 STRPGVEVETTREPLGVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPAELTPASAWAL 181
Query: 212 VDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV 270
V++L +AG P GV N++ G+ V + +HPD+ A+SF GS G+ I A G RV
Sbjct: 182 VEILEEAGLPAGVFNLVMGSGSEVGQALVEHPDVDAVSFTGSTAVGRRIAAAAAARGARV 241
Query: 271 QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKK 328
Q MG KN V++ DA+ + V AF + GQRC A S +I V E + ++ L +
Sbjct: 242 QLEMGGKNPLVVLDDADLDLAVECAVQGAFFSTGQRCTASSRLI-VTEGIHDRFVEALVE 300
Query: 329 RAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLK 379
R +ALKV G D+GPV+S + E+ L I+ EGA L+ G LK
Sbjct: 301 RTKALKVGDALDEGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLK 351
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 276 bits (708), Expect = 9e-89
Identities = 109/310 (35%), Positives = 166/310 (53%), Gaps = 4/310 (1%)
Query: 70 ESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVL 129
++AVA+A+ A++ W+ R +L +L ++++ ++LA T E GK + +A G+V
Sbjct: 1 DAAVAAARAAFKAWAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALGEVA 60
Query: 130 RGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVA 189
R + + GE + R PLGV ITP+NFP ++ W A
Sbjct: 61 RAADTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPA 120
Query: 190 IACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAIS 248
+A GNT V+KPSE P ++L ++L +AG PPGV+NV+ G + + HP + IS
Sbjct: 121 LAAGNTVVLKPSELTPLTALLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPRVDKIS 180
Query: 249 FVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCM 308
F GS GK I A+N KRV +G K+ ++ DA+ + V AFG AGQ C
Sbjct: 181 FTGSTAVGKAIMRAAAENLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGNAGQVCT 240
Query: 309 ALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVD 366
A S + V E++ E++ L +R +ALKV P TD+GP+IS +R+L+ I+
Sbjct: 241 AAS-RLLVHESIYDEFVERLVERVKALKVGNPLDPDTDMGPLISAAQLDRVLAYIEDAKA 299
Query: 367 EGATLLLDGR 376
EGA LL G+
Sbjct: 300 EGAKLLCGGK 309
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 256 bits (657), Expect = 1e-80
Identities = 109/350 (31%), Positives = 180/350 (51%), Gaps = 8/350 (2%)
Query: 33 YIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQ 92
I G++V S NPA E + RV A+P ++E+AVA+A++A++ W K R
Sbjct: 2 VIGGEWVGSGGET-FTSRNPANGEPIARVFPASPEDVEAAVAAAREAFKEWRKVPAPRRG 60
Query: 93 QVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAG 152
+++ ++ ++ + L ++ E GK L + G+V + + + + ++ G T+
Sbjct: 61 EIVRQIGEALRKKKEALGRLVSLEMGKILPEGLGEVQEMIDICDYAVGLSRMLYGLTIPS 120
Query: 153 VAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG---ACM 209
+ PLGV IT FNFP +P W +A+ CGNT V KPSE P A
Sbjct: 121 ERPGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPSETTPLTAIAVT 180
Query: 210 -MLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGK 268
+L ++L + G PPGVVN++ G D + P + +SF GS + G+ + E A+
Sbjct: 181 KILAEVLEKNGLPPGVVNLVTGGGDGGELLVHDPRVPLVSFTGSTEVGRRVGETVARRFG 240
Query: 269 RVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPEL 326
RV +G N ++M DA+ + ++ AA G AGQRC +I V E+V E+L L
Sbjct: 241 RVLLELGGNNAIIVMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLI-VHESVYDEFLERL 299
Query: 327 KKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
K + +++ GT +GP+I+ A E+ L+ I+ +G T+L G+
Sbjct: 300 VKAYKQVRIGDPLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGK 349
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 251 bits (644), Expect = 7e-79
Identities = 118/353 (33%), Positives = 197/353 (55%), Gaps = 6/353 (1%)
Query: 33 YIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQ 92
YI+G+FV S + + ID+ NPAT EVV VP AT + + AV +A+ A + W + I R
Sbjct: 1 YINGEFVPSSSGETIDVLNPATGEVVATVPAATAEDADRAVDAAEAAQKAWERLPAIERA 60
Query: 93 QVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAG 152
L +L ++I+ N +LA+ I EEQGKTL+ A +V ++ ++GE +
Sbjct: 61 AYLRKLADLIRENADELAKLIVEEQGKTLSLARVEVEFTADYIDYMAEWARRIEGEIIPS 120
Query: 153 VAKDMDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSERDPGACMML 211
+ +I ++VP+GV AGI P+NFP +I + P A+ GNT VIKPSE P +
Sbjct: 121 DRPNENIFIFKVPIGVVAGILPWNFPFFLIARKLAP-ALVTGNTIVIKPSEETPLNALEF 179
Query: 212 VDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV 270
+++ +AG P GV+N++ G V + + HP + IS GS +AG+ I E A+N +V
Sbjct: 180 AELVDEAGLPAGVLNIVTGRGSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAENITKV 239
Query: 271 QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKK 328
+G K ++M DA+ + +V + GQ C + ++V E + E++ +L +
Sbjct: 240 SLELGGKAPAIVMKDADLDLAVKAIVDSRIINCGQVCTC-AERVYVHEDIYDEFMEKLVE 298
Query: 329 RAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
+ +A+KV TD+GP+++ A +++ +++ V+ GATLL G+ +
Sbjct: 299 KMKAVKVGDPFDAATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGE 351
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 248 bits (637), Expect = 7e-78
Identities = 117/336 (34%), Positives = 188/336 (55%), Gaps = 18/336 (5%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT EV+ VP A A+ ++A+ +A A++TW KT+ R +L R ++I+ + LA
Sbjct: 3 NPATGEVIGEVPDAGAADADAAIDAAAAAFKTWRKTTARERAAILRRWADLIRERAEDLA 62
Query: 111 ENITEEQGKTLADAEGDVLRGLQVV----EQCCSIPTIMQGETLAGVAKDMDIHSYRVPL 166
+T EQGK LA+A G+V + E+ I G T+ A I + P+
Sbjct: 63 RLLTLEQGKPLAEARGEVDYAASFLEWFAEEARRI----YGRTIPSPAPGKRILVIKQPV 118
Query: 167 GVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVV 225
GV A ITP+NFP AMI + P A+A G T V+KP+E P + + L ++ +AG P GV+
Sbjct: 119 GVVAAITPWNFPAAMITRKIAP-ALAAGCTVVLKPAEETPLSALALAELAEEAGLPAGVL 177
Query: 226 NVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHG--VI 282
NV+ G+ + +C P +R ISF GS GK + + A KRV +G + ++
Sbjct: 178 NVVTGSPAEIGEALCASPRVRKISFTGSTAVGKLLMAQAADTVKRVSLELGG--NAPFIV 235
Query: 283 MSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNV 340
DA+ ++ + + F AGQ C+ + I+V E++ E++ +L +R + LKV G
Sbjct: 236 FDDADLDKAVDGAIASKFRNAGQTCVC-ANRIYVHESIYDEFVEKLVERVKKLKVGNGLD 294
Query: 341 PGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
GTD+GP+I+ +A E++ +L++ V +GA +L G+
Sbjct: 295 EGTDMGPLINERAVEKVEALVEDAVAKGAKVLTGGK 330
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 244 bits (624), Expect = 6e-76
Identities = 116/333 (34%), Positives = 182/333 (54%), Gaps = 10/333 (3%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
NPAT EV+ +VP+ AE+++AVA+AK+A+ WS+ S R ++L ++ ++I+A +L
Sbjct: 2 FNPATGEVLAKVPEGGAAEVDAAVAAAKEAFPGWSRMSPAERARILHKVADLIEARADEL 61
Query: 110 AENITEEQGKTLADAE-GDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSY--RVPL 166
A + + GK + A D+ R + GE+ +D +Y R P+
Sbjct: 62 ALLESLDTGKPITLARTRDIPRAAANFRFFADYILQLDGESYP---QDGGALNYVLRQPV 118
Query: 167 GVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVN 226
GV ITP+N P M+ W A+A GNT V+KPSE P +L ++ +AG PPGVVN
Sbjct: 119 GVAGLITPWNLPLMLLTWKIAPALAFGNTVVLKPSEWTPLTAWLLAELANEAGLPPGVVN 178
Query: 227 VIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSD 285
V+HG +A + HPD+ ISF G G+ I A N K V +G KN ++ +D
Sbjct: 179 VVHGFGPEAGAALVAHPDVDLISFTGETATGRTIMRAAAPNLKPVSLELGGKNPNIVFAD 238
Query: 286 ANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGT 343
A+ ++ V ++F G+ C+A + I V ++ E+L +RA+ALKV P T
Sbjct: 239 ADLDRAVDAAVRSSFSNNGEVCLA-GSRILVQRSIYDEFLERFVERAKALKVGDPLDPDT 297
Query: 344 DLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
++GP+IS + E++L ++ EGAT+L G
Sbjct: 298 EVGPLISKEHLEKVLGYVELARAEGATILTGGG 330
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 241 bits (617), Expect = 5e-75
Identities = 113/335 (33%), Positives = 172/335 (51%), Gaps = 15/335 (4%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
NPAT EV P A+ A+++ AVA+AK A+ WS T + R+ L + + I+AN ++L
Sbjct: 2 INPATGEVFASAPVASEAQLDQAVAAAKAAFPGWSATPLEERRAALLAIADAIEANAEEL 61
Query: 110 AENITEEQGKTLADAEGDVLRGLQVVEQCCSIP----TIMQGETLAGVAKDMDIHSYRVP 165
A +T EQGK LA+A+ +V + + S+ I +T + R P
Sbjct: 62 ARLLTLEQGKPLAEAQFEVGGAVAWLRYTASLDLPDEVIEDDDT-------RRVELRRKP 114
Query: 166 LGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVV 225
LGV A I P+NFP ++ W A+ GNT V+KPS P + L ++ + PPGV+
Sbjct: 115 LGVVAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPFTPLCTLKLGELAQEV-LPPGVL 173
Query: 226 NVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSD 285
NV+ G + + HPDIR ISF GS GK + AK KRV +G + +++ D
Sbjct: 174 NVVSGGDELGPALTSHPDIRKISFTGSTATGKKVMASAAKTLKRVTLELGGNDAAIVLPD 233
Query: 286 ANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGT 343
+ +L AF +GQ C A+ + +V E++ E+ L A+A V G PGT
Sbjct: 234 VDIDAVAPKLFWGAFINSGQVCAAIKRL-YVHESIYDEFCEALVALAKAAVVGDGLDPGT 292
Query: 344 DLGPVISPQAKERILSLIQSGVDEGATLLLDGRNL 378
LGPV + +++ L++ +GA +L G L
Sbjct: 293 TLGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPL 327
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 234 bits (600), Expect = 3e-72
Identities = 128/358 (35%), Positives = 182/358 (50%), Gaps = 30/358 (8%)
Query: 32 LYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR 91
YIDG +V T+ ID+ NPAT EV+ VP T A+++ AVA+A++A+ WS TS+ R
Sbjct: 1 FYIDGAWVAPAGTETIDVINPATEEVIGTVPLGTAADVDRAVAAARRAFPAWSATSVEER 60
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLA 151
+L R+ +A +LA+ IT E G A + R QV I A
Sbjct: 61 AALLERIAEAYEARADELAQAITLEMG-----APITLARAAQV--GL----GIGHLRAAA 109
Query: 152 GVAKDMDIHSY-------RVPLGVTAGITPFNFPA-MIPLWMFPVAIACGNTHVIKPSER 203
KD + R P+GV ITP+N+P I L + P A+A G T V+KPSE
Sbjct: 110 DALKDFEFEERRGNSLVVREPIGVCGLITPWNWPLNQIVLKVAP-ALAAGCTVVLKPSEV 168
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYER 262
P + ++L ++L +AG P GV N+++G V + HPD+ +SF GS +AGK + E
Sbjct: 169 APLSAIILAEILDEAGLPAGVFNLVNGDGPVVGEALSAHPDVDMVSFTGSTRAGKRVAEA 228
Query: 263 GAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFV-----G 317
A KRV +G K+ +I+ DA+ + + V A F +GQ C A T + V
Sbjct: 229 AADTVKRVALELGGKSANIILDDADLEKAVPRGVAACFANSGQSCNAP-TRMLVPRSRYA 287
Query: 318 EAVEWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
EA E AEA V P T LGP+ S +R+ IQ G++EGA L+ G
Sbjct: 288 EAEE---IAAAAAEAYVVGDPRDPATTLGPLASAAQFDRVQGYIQKGIEEGARLVAGG 342
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 234 bits (599), Expect = 5e-72
Identities = 116/349 (33%), Positives = 194/349 (55%), Gaps = 7/349 (2%)
Query: 33 YIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTSIIT 90
YIDG++VE+ + D+ NPA EV+ VP+ T + + A+A+A++A+++ W
Sbjct: 1 YIDGEWVEAASGKTRDIINPANGEVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQE 60
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETL 150
R +LFR+ + I+ + ++LA T GKTL ++E D+ + T GE
Sbjct: 61 RAALLFRIADKIREDAEELARLETLNTGKTLRESEIDIDDVANCFRYYAGLATKETGEVY 120
Query: 151 AGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMM 210
V + + R P+GV ITP+N+P + W A+A GNT VIKPSE P +
Sbjct: 121 D-VPPHVISRTVREPVGVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPLTTIA 179
Query: 211 LVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKR 269
L +++ +AG P GVVN++ G+ V + + PD+ +SF G G+ I A N K+
Sbjct: 180 LFELIEEAGLPAGVVNLVTGSGATVGAELAESPDVDLVSFTGGTATGRSIMRAAAGNVKK 239
Query: 270 VQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELK 327
V +G KN ++ +DA+ ++Q + F AGQ C A S ++ V E++ +++ L
Sbjct: 240 VALELGGKNPNIVFADADFETAVDQALNGVFFNAGQVCSAGSRLL-VEESIHDKFVAALA 298
Query: 328 KRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+RA+ +K+ G T++GP++S + +E++LS IQ G +EGA L+ G+
Sbjct: 299 ERAKKIKLGNGLDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGK 347
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 230 bits (589), Expect = 1e-70
Identities = 123/355 (34%), Positives = 192/355 (54%), Gaps = 13/355 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWS--KTS 87
T L+I+ +FV+S + NPAT EV+ +V +A ++++AV +A+ A+ET K
Sbjct: 4 TGLFINNEFVDSVSGKTFPTINPATEEVICQVAEADEEDVDAAVKAARAAFETGWWRKMD 63
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTL-ADAEGDVLRGLQVVEQCCSIPTIMQ 146
R ++L +L ++I+ + +LA + + GK L A+GDV ++ + +Q
Sbjct: 64 PRERGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLRYYAGWADKIQ 123
Query: 147 GETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERD 204
G+T + D + +Y R P+GV I P+NFP ++ W A+A GNT V+KP+E+
Sbjct: 124 GKT---IPIDGNFLAYTRREPIGVCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPAEQT 180
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERG 263
P + + L +++ +AG PPGVVN++ G A I H D+ I+F GS G+ I E
Sbjct: 181 PLSALYLAELIKEAGFPPGVVNIVPGFGPTAGAAISSHMDVDKIAFTGSTAVGRTIMEAA 240
Query: 264 AK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-- 320
AK N K+V +G K+ ++ DA+ + F GQ C A S IFV E++
Sbjct: 241 AKSNLKKVTLELGGKSPNIVFDDADLDKAVEWAAFGIFFNQGQCCCAGSR-IFVQESIYD 299
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
E++ + K RAE V P T GP +S ++ILS I+SG EGATLL G
Sbjct: 300 EFVEKFKARAEKRVVGDPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGG 354
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 231 bits (591), Expect = 2e-70
Identities = 137/355 (38%), Positives = 196/355 (55%), Gaps = 15/355 (4%)
Query: 32 LYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
L I GK V ++ I+ NPA +EV+ V KAT E E+AV +A+ A+ TW +T
Sbjct: 35 LVIGGKEVRTEEK--IESRNPADPSEVLGTVQKATKEEAEAAVQAARAAFPTWRRTPPEE 92
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETL 150
R ++L R +++ +LA + E GK A+A+ DV + +E ++G +
Sbjct: 93 RARLLLRAAALLRRRRFELAAWMVLEVGKNWAEADADVAEAIDFLEYYAREMLRLRGFPV 152
Query: 151 AGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMM 210
V + + + YR PLGV A I+P+NFP I M A+ GNT V+KP+E P
Sbjct: 153 EMVPGEDNRYVYR-PLGVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPAEDTPVIAAK 211
Query: 211 LVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYER------G 263
LV++L +AG PPGVVN + G + V +++ +HPD+R I+F GS + G IYER G
Sbjct: 212 LVEILEEAGLPPGVVNFLPGPGEEVGDYLVEHPDVRFIAFTGSREVGLRIYERAAKVQPG 271
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
K KRV + MG KN ++ DA+ +V +AFG GQ+C A S VI V E+V E
Sbjct: 272 QKWLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQKCSACSRVI-VHESVYDE 330
Query: 322 WLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+L L +R +ALKV P +GPVI A++RI I+ G EG LLL G
Sbjct: 331 FLERLVERTKALKVGDPEDPEVYMGPVIDKGARDRIRRYIEIGKSEG-RLLLGGE 384
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 229 bits (586), Expect = 3e-70
Identities = 108/332 (32%), Positives = 176/332 (53%), Gaps = 6/332 (1%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTSIITRQQVLFRLQNIIKANMK 107
NPAT E RVP+A+ A+++ AVA+A+ A+E W K + R ++L RL ++I+AN +
Sbjct: 2 INPATGEPWARVPEASAADVDRAVAAARAAFEGGAWRKLTPTERGKLLRRLADLIEANAE 61
Query: 108 QLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLG 167
+LAE T + GK + + V + + ++G + D + R PLG
Sbjct: 62 ELAELETRDNGKLIRETRAQVRYLAEWYRYYAGLADKIEGAVIPVDKGDYLNFTRREPLG 121
Query: 168 VTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNV 227
V A ITP+N P ++ A+A GNT V+KPSE P + + L + +AG PPGVVNV
Sbjct: 122 VVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTPASTLELAKLAEEAGFPPGVVNV 181
Query: 228 IHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
+ G + + +HP + I+F G + G++I A+N V +G K+ ++ DA
Sbjct: 182 VTGFGPETGEALVEHPLVAKIAFTGGTETGRHIARAAAENLAPVTLELGGKSPNIVFDDA 241
Query: 287 NRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTD 344
+ +N +V F AAGQ C+A S + V ++ E++ L RA A++V P T
Sbjct: 242 DLDAAVNGVVAGIFAAAGQTCVAGSR-LLVQRSIYDEFVERLVARARAIRVGDPLDPETQ 300
Query: 345 LGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+GP+ + + E++ + +EGA +L G
Sbjct: 301 MGPLATERQLEKVERYVARAREEGARVLTGGE 332
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 222 bits (567), Expect = 1e-68
Identities = 112/376 (29%), Positives = 169/376 (44%), Gaps = 35/376 (9%)
Query: 74 ASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQ 133
A+A+ A++ W+ R +L ++ ++++ ++LA T E GK + +A G+V R +
Sbjct: 1 AAARAAFKAWAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVARAID 60
Query: 134 VVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACG 193
+ + G L + + R PLGV ITP+NFP ++ W A+A G
Sbjct: 61 TFRYAAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAG 120
Query: 194 NTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGS 252
NT V+KPSE P + L ++L +AG PPGVVNV+ G D V + HP + ISF GS
Sbjct: 121 NTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGGGDEVGAALLSHPRVDKISFTGS 180
Query: 253 DQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALST 312
GK I + A+N K V +G K+ ++ DA+ + V AF AGQ C A S
Sbjct: 181 TAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQICTAAS- 239
Query: 313 VIFVGEAVEWLPELKKRAEALKVSAGNVPGTDL--------GPVIS-------PQAKERI 357
+ V E++ E ++ + V +V D+ GPV+ +A
Sbjct: 240 RLLVHESI--YDEFVEKLVTVLV---DVD-PDMPIAQEEIFGPVLPVIRFKDEEEAIALA 293
Query: 358 LSLI---QSGV---DEGATLLLDGRNLKVG---INVPIPVPLSMFSFTGSRGSFLGENHF 408
+GV D L + L+ G IN F G + S +G
Sbjct: 294 NDTEYGLTAGVFTRDLNRALRV-AERLRAGTVYINDSSIGVGPEAPFGGVKNSGIGREG- 351
Query: 409 YGKQGFYFYTETKTVT 424
G G YT TKTV
Sbjct: 352 -GPYGLEEYTRTKTVV 366
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 217 bits (556), Expect = 6e-66
Identities = 104/338 (30%), Positives = 171/338 (50%), Gaps = 12/338 (3%)
Query: 47 IDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANM 106
I++ +P EV+ RVP A+ ++E A+A+AK+ + R ++L R +++
Sbjct: 1 IEVISPYDGEVIGRVPVASEEDVEKAIAAAKEGAKEMKSLPAYERAEILERAAQLLEERR 60
Query: 107 KQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETL-----AGVAKDMDIHS 161
++ A I E GK + DA +V R ++ + + GET+ G + +
Sbjct: 61 EEFARTIALEAGKPIKDARKEVDRAIETLRLSAEEAKRLAGETIPFDASPGGEGRIG-FT 119
Query: 162 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCP 221
R P+GV A ITPFNFP + AIA GN V+KP+ + P + + L ++L +AG P
Sbjct: 120 IREPIGVVAAITPFNFPLNLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEAGLP 179
Query: 222 PGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHG 280
G +NV+ G+ + V + + P +R ISF GS G+ I + K+V +G+
Sbjct: 180 KGALNVVTGSGETVGDALVTDPRVRMISFTGSPAVGEAIARKAGL--KKVTLELGSNAAV 237
Query: 281 VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAG 338
++ +DA+ + + V AF AGQ C+++ IFV E + E+L + L V
Sbjct: 238 IVDADADLEKAVERCVSGAFANAGQVCISVQR-IFVHEDIYDEFLERFVAATKKLVVGDP 296
Query: 339 NVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
TD+GP+IS ERI ++ V+ GA LL G+
Sbjct: 297 LDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGGK 334
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 213 bits (544), Expect = 3e-64
Identities = 113/336 (33%), Positives = 178/336 (52%), Gaps = 12/336 (3%)
Query: 48 DLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMK 107
D NPA V RV + + E A+A+A A+ W+ T+ R+++L + I++
Sbjct: 2 DDLNPADGSVYARVAVGSRQDAERAIAAAYDAFPAWAATTPSERERILLKAAEIMERRAD 61
Query: 108 QLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLG 167
L + + +E G T A + +++ ++GETL + S R PLG
Sbjct: 62 DLIDLLIDEGGSTYGKAWFETTFTPELLRAAAGECRRVRGETLPSDSPGTVSMSVRRPLG 121
Query: 168 VTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNV 227
V AGITPFN+P ++ A+A GNT V+KPSE P + + +++ +AG P GV NV
Sbjct: 122 VVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFNV 181
Query: 228 IHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
+ G V + + D P +R ++F GS G+ I E+ ++ K++ +G KN ++++DA
Sbjct: 182 VTGGGAEVGDELVDDPRVRMVTFTGSTAVGREIAEKAGRHLKKITLELGGKNPLIVLADA 241
Query: 287 NRSNTLNQLVG-AAFGA---AGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNV 340
+ L+ V AAFGA GQ CM+ S +I V E V E++ + RA LKV
Sbjct: 242 D----LDYAVRAAAFGAFMHQGQICMSASRII-VEEPVYDEFVKKFVARASKLKVGDPRD 296
Query: 341 PGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
P T +GP+ISP+ ERI ++ V +GA LL G+
Sbjct: 297 PDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGGK 332
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 212 bits (542), Expect = 1e-63
Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 36/364 (9%)
Query: 32 LYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYE--TWSKTSII 89
L+I G++V ++ ID+ +PAT EVV RVP+ATPA++++AVA+A++A++ W + S
Sbjct: 1 LFIGGRWVAPSGSETIDVVSPATEEVVGRVPEATPADVDAAVAAARRAFDNGPWPRLSPA 60
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R VL RL + ++A +LA T E G ++ R Q P
Sbjct: 61 ERAAVLRRLADALEARADELARLWTAENGMPIS-----WSRRAQG-----PGPA-ALLRY 109
Query: 150 LAGVAKDM------------DIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHV 197
A +A+D + R P+GV A I P+N P + A+A G T V
Sbjct: 110 YAALARDFPFEERRPGSGGGHVLVRREPVGVVAAIVPWNAPLFLAALKIAPALAAGCTVV 169
Query: 198 IKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGK 257
+KPS P +L + +AG PPGVVNV+ + ++ HP + +SF GS AG+
Sbjct: 170 LKPSPETPLDAYLLAEAAEEAGLPPGVVNVVPADREVGEYLVRHPGVDKVSFTGSTAAGR 229
Query: 258 YIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVG 317
I + RV +G K+ +++ DA+ + LV A+ GQ C+AL+ ++
Sbjct: 230 RIAAVCGERLARVTLELGGKSAAIVLDDADLDAAVPGLVPASLMNNGQVCVALTRIL--- 286
Query: 318 EAV------EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATL 371
V E + L ALKV P T +GP+ S + +ER+ I G EGA L
Sbjct: 287 --VPRSRYDEVVEALAAAVAALKVGDPLDPATQIGPLASARQRERVEGYIAKGRAEGARL 344
Query: 372 LLDG 375
+ G
Sbjct: 345 VTGG 348
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 213 bits (544), Expect = 1e-63
Identities = 121/356 (33%), Positives = 180/356 (50%), Gaps = 32/356 (8%)
Query: 32 LYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
L I G+ + ++ I NPA +EVV RV KAT E A+ +A +A+ETW K S
Sbjct: 39 LIIGGERITTEDK--IVSINPANKSEVVGRVSKATKELAEKAMQAALEAFETWKKWSPED 96
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGL--------QVVEQCCSIP 142
R ++L R II+ + + + +E GK A+A+ D + Q+++ P
Sbjct: 97 RARILLRAAAIIRRRKHEFSAWLVKEAGKPWAEADADTAEAIDFLEYYARQMLKLADGKP 156
Query: 143 TI-MQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 201
GE + +PLGV I+P+NFP I M AI GNT ++KP+
Sbjct: 157 VESRPGE---------HNRYFYIPLGVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPA 207
Query: 202 ERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIY 260
P V++L +AG P GVVN + G+ V +++ DHP R I+F GS + G IY
Sbjct: 208 SDTPVIAAKFVEVLEEAGLPAGVVNFVPGSGSEVGDYLVDHPKTRFITFTGSREVGLRIY 267
Query: 261 ERGAK--NG----KRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVI 314
ER AK G KRV + MG K+ V+ DA+ +V +AFG +GQ+C A S I
Sbjct: 268 ERAAKVQPGQIWLKRVIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQKCSACSRAI 327
Query: 315 FVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEG 368
V E V E L ++ + + L V +GPVI+ + ++I+S I+ G +EG
Sbjct: 328 -VHEDVYDEVLEKVVELTKELTVGNPEDN-AYMGPVINQASFDKIMSYIEIGKEEG 381
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 211 bits (538), Expect = 7e-63
Identities = 116/363 (31%), Positives = 183/363 (50%), Gaps = 6/363 (1%)
Query: 25 RHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWS 84
+ T+ I GK+ ++ ++NPAT EV+ VP AE A+ASA A+ +WS
Sbjct: 20 AGLLRTQGLIGGKWTDAYDGKTFPVYNPATGEVIANVPCMGRAETNDAIASAHDAFPSWS 79
Query: 85 KTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTI 144
K + R ++L R ++I AN + LA+ +T EQGK L +A G+V G +E
Sbjct: 80 KLTASERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKEAIGEVAYGASFLEYFAEEAKR 139
Query: 145 MQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSER 203
+ G+ + D + + P+GV ITP+NFP AMI + P A+A G T V+KPSE
Sbjct: 140 VYGDIIPSPFPDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGP-ALAAGCTVVVKPSEL 198
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYER 262
P + ++ QAG PPGV+NV+ G + + + P +R I+F GS GK +
Sbjct: 199 TPLTALAAAELALQAGIPPGVLNVVMGDAPEIGDALLASPKVRKITFTGSTAVGKKLMAG 258
Query: 263 GAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-- 320
A KRV +G ++ DA+ + + + F +GQ C+ + I V E +
Sbjct: 259 AAATVKRVSLELGGNAPFIVFDDADLDVAVKGALASKFRNSGQTCVC-ANRILVQEGIYD 317
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
++ K + L V G G GP+I+ A +++ S +Q V +GA +LL G+ +
Sbjct: 318 KFAEAFSKAVQKLVVGDGFEEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHSL 377
Query: 381 GIN 383
G
Sbjct: 378 GGT 380
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 208 bits (533), Expect = 9e-63
Identities = 99/318 (31%), Positives = 169/318 (53%), Gaps = 15/318 (4%)
Query: 68 EMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGD 127
+++ A A+A A + W+ T R +L + I++ ++A+ + E G T A +
Sbjct: 1 DVDRAYAAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKAAFE 60
Query: 128 VLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFP 187
V + ++ + +P +GE L + RVPLGV I+PFNFP ++ +
Sbjct: 61 VGAAIAILREAAGLPRRPEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPLILAMRSVA 120
Query: 188 VAIACGNTHVIKPSERDP--GACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDI 244
A+A GN V+KP R P G +++ ++ +AG P GV+NV+ G + + + +HP +
Sbjct: 121 PALALGNAVVLKPDSRTPVTGG-LLIAEIFEEAGLPKGVLNVVPGGGSEIGDALVEHPRV 179
Query: 245 RAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVG-AAFGA- 302
R ISF GS G++I E ++ K+V +G N +++ DA+ L+ V AAFGA
Sbjct: 180 RMISFTGSTAVGRHIGELAGRHLKKVALELGGNNPLIVLDDAD----LDLAVSAAAFGAF 235
Query: 303 --AGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERIL 358
GQ CMA ++ V E+V E++ +L +A+AL V P T +GP+I+ + +R+
Sbjct: 236 LHQGQICMAAGRIL-VHESVYDEFVEKLVAKAKALPVGDPRDPDTVIGPLINERQVDRVH 294
Query: 359 SLIQSGVDEGATLLLDGR 376
++++ V GA LL G
Sbjct: 295 AIVEDAVAAGARLLTGGT 312
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 209 bits (534), Expect = 9e-63
Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 8/337 (2%)
Query: 47 IDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANM 106
I++ NPA EV+ VP + E+ A+ A+KA + S R ++L ++ +I+
Sbjct: 1 IEVRNPANGEVIDTVPSLSREEVREAIEVAEKAKDVMSNLPAYKRYKILMKVAELIERRK 60
Query: 107 KQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETL----AGVAKDMDIHSY 162
++LA+ +T E GK + + +V R +++ + +++GET+ + +
Sbjct: 61 EELAKLLTIEVGKPIKQSRVEVERTIRLFKLAAEEAKVLRGETIPVDAYEYNERRIAFTV 120
Query: 163 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPP 222
R P+GV ITPFNFPA + AIA GN+ V+KPS P + L +L +AG PP
Sbjct: 121 REPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEAGLPP 180
Query: 223 GVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGV 281
GV+NV+ G V + I +P + ISF GS G I + GK+V +G + +
Sbjct: 181 GVINVVTGYGSEVGDEIVTNPKVNMISFTGSTAVGLLIASKAGGTGKKVALELGGSDPMI 240
Query: 282 IMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGN 339
++ DA+ ++ V F AGQ C A+ ++ V E V ++L L ++ + LKV
Sbjct: 241 VLKDADLERAVSIAVRGRFENAGQVCNAVKRIL-VEEEVYDKFLKLLVEKVKKLKVGDPL 299
Query: 340 VPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
TDLGP+ISP+A ER+ +L+ V++G +L G+
Sbjct: 300 DESTDLGPLISPEAVERMENLVNDAVEKGGKILYGGK 336
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 207 bits (528), Expect = 1e-61
Identities = 108/359 (30%), Positives = 189/359 (52%), Gaps = 19/359 (5%)
Query: 31 KLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
+IDG+FV S++ + + +PATNEV+ V + A+++ A +AK+A++ W++
Sbjct: 2 GHFIDGEFVPSESGETFETLSPATNEVLGSVARGGAADVDRAAKAAKEAFKRWAELKAAE 61
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQ----VVEQCCSIPTIMQ 146
R++ L ++ ++I+ + ++A + G+ L V+R + ++C M
Sbjct: 62 RKRYLHKIADLIEQHADEIAVLECLDCGQPLRQTRQQVIRAAENFRFFADKC---EEAMD 118
Query: 147 GETLAGVAKDMDIHSY---RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
G T +D H RVP+G ITP+N P M+ W A+A GNT V+KP+E
Sbjct: 119 GRTYP-----VDTHLNYTVRVPVGPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEW 173
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P L ++ +AG P GV N++HG +A + HPD++A+SF G G I
Sbjct: 174 SPLTAARLAEIAKEAGLPDGVFNLVHGFGEEAGKALVAHPDVKAVSFTGETATGSIIMRN 233
Query: 263 GAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-- 320
GA KR +G K+ ++ DA+ L+ +V F G+RC A S+ + V E++
Sbjct: 234 GADTLKRFSMELGGKSPVIVFDDADLERALDAVVFMIFSFNGERCTA-SSRLLVQESIAE 292
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLK 379
+++ +L +R A++V P T++GP+I P+ ++L +++ EGAT+L+ G
Sbjct: 293 DFVEKLVERVRAIRVGHPLDPETEVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAP 351
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 205 bits (523), Expect = 5e-61
Identities = 112/363 (30%), Positives = 182/363 (50%), Gaps = 24/363 (6%)
Query: 32 LYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET-WSKTSIIT 90
+IDG+ V ++ +D+ NPAT +V+ V AT A++++AVASA +A+ + W+KT+
Sbjct: 2 HFIDGRPVAGQSEKRLDITNPATEQVIASVASATEADVDAAVASAWRAFVSAWAKTTPAE 61
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSI--------P 142
R ++L RL ++I+ + ++LA+ T GK++ + R +V +
Sbjct: 62 RGRILLRLADLIEQHGEELAQLETLCSGKSIH-----LSRAFEV--GQSANFLRYFAGWA 114
Query: 143 TIMQGETLAGVAKDMDIHSY-----RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHV 197
T + GETLA M Y R P+GV AGI P+NF MI +W A+A G T V
Sbjct: 115 TKINGETLAPSIPSMQGERYTAFTRREPVGVVAGIVPWNFSVMIAVWKIGAALATGCTIV 174
Query: 198 IKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGK 257
IKPSE P + + ++ +AG P GV+NV++G + HPD+ +SF GS GK
Sbjct: 175 IKPSEFTPLTLLRVAELAKEAGIPDGVLNVVNGKGAVGAQLISHPDVAKVSFTGSVATGK 234
Query: 258 YIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVG 317
I + A + RV +G KN + DA+ + L+ A F GQ C A +V
Sbjct: 235 KIGRQAASDLTRVTLELGGKNAAAFLKDADIDWVVEGLLTAGFLHQGQVC-AAPERFYVH 293
Query: 318 EAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
+ E + +LK+ + +V + GP+ + +++ S + EG ++ G
Sbjct: 294 RSKFDELVTKLKQALSSFQVGSPMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGG 353
Query: 376 RNL 378
L
Sbjct: 354 EAL 356
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 205 bits (523), Expect = 5e-61
Identities = 107/367 (29%), Positives = 169/367 (46%), Gaps = 38/367 (10%)
Query: 31 KLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKT-SII 89
K I+G++ ES I++++P EV+ VP + E+ A +A A W T +
Sbjct: 3 KYLINGEWKESSG-KTIEVYSPIDGEVIGSVPALSALEILEAAETAYDAGRGWWPTMPLE 61
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R L + +++K N +++A + E GKTL DA +V R + + TI + +
Sbjct: 62 ERIDCLHKFADLLKENKEEVANLLMWEIGKTLKDALKEVDRTIDYIRD-----TIEELKR 116
Query: 150 LAGVAKDMDIHS---------YRVPLGVTAGITPFNFP------AMIPLWMFPVAIACGN 194
L G + D R PLGV I PFN+P +IP A+ GN
Sbjct: 117 LDGDSLPGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNLTVSKLIP------ALIMGN 170
Query: 195 THVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSD 253
T V KP+ + + L + AG P GVVNV+ G + + + H I ISF GS
Sbjct: 171 TVVFKPATQGVLLGIPLAEAFHDAGFPKGVVNVVTGRGREIGDPLVTHGRIDVISFTGST 230
Query: 254 QAGKYIYERGAKNGKRVQSNM--GAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALS 311
+ G + K + + G K+ +++ DA+ ++V A +GQRC A+
Sbjct: 231 EVGNRL----KKQHPMKRLVLELGGKDPAIVLPDADLELAAKEIVKGALSYSGQRCTAIK 286
Query: 312 TVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGA 369
+ V E+V E + LK+ LKV G D+ P+I P++ + + LI V +GA
Sbjct: 287 -RVLVHESVADELVELLKEEVAKLKVGMPWDNGVDITPLIDPKSADFVEGLIDDAVAKGA 345
Query: 370 TLLLDGR 376
T+L G
Sbjct: 346 TVLNGGG 352
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 203 bits (519), Expect = 2e-60
Identities = 107/336 (31%), Positives = 171/336 (50%), Gaps = 12/336 (3%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
PAT EV+ V A +++ AV SAK A + WS TS + R ++L + ++++ ++A
Sbjct: 3 EPATGEVLATVHCAGAEDVDLAVKSAKAAQKEWSATSGMERGRILRKAADLLRERNDEIA 62
Query: 111 ENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSY----RVPL 166
T + GK + +A D+ +E + + GE + + S+ R PL
Sbjct: 63 RLETIDNGKPIEEARVDIDSSADCLEYYAGLAPTLSGEHV-----PLPGGSFAYTRREPL 117
Query: 167 GVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVN 226
GV AGI +N+P I W A+ACGN V KPS P ++L ++LT+AG P GV N
Sbjct: 118 GVCAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGVFN 177
Query: 227 VIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
V+ G + +C+HPD+ +SF GS GK + AK K V +G K+ +I DA
Sbjct: 178 VVQGGGETGQLLCEHPDVAKVSFTGSVPTGKKVMSAAAKGIKHVTLELGGKSPLIIFDDA 237
Query: 287 NRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTD 344
+ N +N + A F + GQ C T +FV ++ E+ L +R + +++ T
Sbjct: 238 DLENAVNGAMMANFLSQGQVCSN-GTRVFVQRSIKDEFTERLVERTKKIRIGDPLDEDTQ 296
Query: 345 LGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
+G +IS + E++L I+S EGA +L G +
Sbjct: 297 MGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVP 332
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 203 bits (518), Expect = 2e-60
Identities = 108/330 (32%), Positives = 174/330 (52%), Gaps = 6/330 (1%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT E++ RV +A+ ++++AVA+A+ A+E WS R ++L+RL +I AN +LA
Sbjct: 3 NPATGELIARVAQASAEDVDAAVAAARAAFEAWSAMDPAERGRILWRLAELILANADELA 62
Query: 111 ENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVT 169
+ + GK + A DV R ++GE + V ++ R P+GV
Sbjct: 63 RLESLDTGKPIRAARRLDVPRAADTFRYYAGWADKIEGEVIP-VRGPFLNYTVREPVGVV 121
Query: 170 AGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIH 229
I P+NFP M W A+A GNT V+KP+E P + + + +++ +AG P GV+NV+
Sbjct: 122 GAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPLSALRIAELMAEAGFPAGVLNVVT 181
Query: 230 G-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANR 288
G A + +HPD+ I+F GS G+ I + A N KRV +G K+ ++ +DA+
Sbjct: 182 GFGEVAGAALVEHPDVDKITFTGSTAVGRKIMQGAAGNLKRVSLELGGKSANIVFADADL 241
Query: 289 SNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLG 346
+ F GQ C A S ++ V E++ E+L A +L+ P T +G
Sbjct: 242 DAAVRAAATGIFYNQGQMCTAGSRLL-VHESIYDEFLERFTSLARSLRPGDPLDPKTQMG 300
Query: 347 PVISPQAKERILSLIQSGVDEGATLLLDGR 376
P++S +R+L + G +EGA LL G+
Sbjct: 301 PLVSQAQFDRVLDYVDVGREEGARLLTGGK 330
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 202 bits (516), Expect = 1e-59
Identities = 116/361 (32%), Positives = 191/361 (52%), Gaps = 13/361 (3%)
Query: 28 ATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTS 87
LYIDG +VE+ + + ++ NPAT EV+ V ATPA++E+AVASAK+ + W+ +
Sbjct: 5 PLQSLYIDGAYVEATSGETFEVINPATGEVLATVQAATPADVEAAVASAKQGQKIWAAMT 64
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAE-GDVLRGLQVVEQCCSIPTIMQ 146
+ R ++L R +I++ +LA T + GK + + D++ G V+E + ++
Sbjct: 65 AMERSRILRRAVDILRERNDELAALETLDTGKPIQETSVVDIVTGADVLEYYAGLAPALE 124
Query: 147 GETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG 206
GE + +++ R PLGV AGI +N+P I W A+A GN + KPSE P
Sbjct: 125 GEQIPLRGGSF-VYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPL 183
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKN 266
+ L ++ T+AG P GV NV+ G ++ +HPDI +SF G GK + A +
Sbjct: 184 TALKLAEIYTEAGLPDGVFNVVQGDGRVGAWLTEHPDIAKVSFTGGVPTGKKVMAAAAAS 243
Query: 267 GKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAA----FGAAGQRCMALSTVIFVGEAV-- 320
K V +G K+ ++ DA+ L++ A F ++GQ C T +FV +++
Sbjct: 244 LKEVTMELGGKSPLIVFDDAD----LDRAADIAMLANFYSSGQVCTN-GTRVFVQKSIKA 298
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
+ L +R E +++ P T+ GP++S ++++L I+ G EGA LL G L
Sbjct: 299 AFEARLLERVERIRIGDPMDPATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTE 358
Query: 381 G 381
G
Sbjct: 359 G 359
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 200 bits (511), Expect = 3e-59
Identities = 113/351 (32%), Positives = 185/351 (52%), Gaps = 6/351 (1%)
Query: 33 YIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQ 92
+IDG++VE A ++ NPA EV+ V ATP ++E A+A+A++A W+ S + R
Sbjct: 1 FIDGEYVEDSAGTTREIINPANGEVIATVHAATPEDVERAIAAARRAQGEWAAMSPMERG 60
Query: 93 QVLFRLQNIIKANMKQLAENITEEQGKTLADAE-GDVLRGLQVVEQCCSIPTIMQGETLA 151
++L R ++I+ ++LA+ T + GKTL + D+ G V E + + GE +
Sbjct: 61 RILRRAADLIRERNEELAKLETLDTGKTLQETIVADMDSGADVFEFFAGLAPALNGEIIP 120
Query: 152 GVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMML 211
++ R PLGV GI +N+P I W A+A GN V KPSE P + +
Sbjct: 121 LGGPS-FAYTIREPLGVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSENTPLTALKV 179
Query: 212 VDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV 270
+++ +AG P GV NV+ G V + +HPD+ +SF G GK I A + K V
Sbjct: 180 AEIMEEAGLPKGVFNVVQGDGAEVGPLLVNHPDVAKVSFTGGVPTGKKIMAAAAGHLKHV 239
Query: 271 QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVE--WLPELKK 328
+G K+ ++ DA+ + ++ + F +AGQ C T +FV + ++ +L L +
Sbjct: 240 TMELGGKSPLIVFDDADLESAVDGAMLGNFFSAGQVCSN-GTRVFVHKKIKERFLARLVE 298
Query: 329 RAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLK 379
R E +K+ T++GP+IS ++++LS I+ G EGATL G +
Sbjct: 299 RTERIKLGDPFDEATEMGPLISAAHRDKVLSYIEKGKAEGATLATGGGRPE 349
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 197 bits (503), Expect = 3e-58
Identities = 112/347 (32%), Positives = 180/347 (51%), Gaps = 9/347 (2%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT E++ VP E E+A+ +A +A++TW T+ R +L + N++ N LA
Sbjct: 3 NPATGEIIGSVPDQGVDETEAAIRAAYEAFKTWRATTAKERSSLLRKWYNLMMENKDDLA 62
Query: 111 ENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTA 170
IT E GK L +A+G++L +E + G+T+ D + + P+GV A
Sbjct: 63 RLITLENGKPLKEAKGEILYAASFLEWFAEEAKRVYGDTIPSPQSDKRLIVIKQPVGVCA 122
Query: 171 GITPFNFP-AMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIH 229
ITP+NFP AMI A+A G T V+KP+E+ P + + L + QAG P GV+NVI
Sbjct: 123 AITPWNFPAAMITRKAGA-ALAAGCTVVVKPAEQTPLSALALARLAEQAGIPKGVLNVIT 181
Query: 230 GAHDAV---NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
G A N + P +R ISF GS GK + ++ A K+V +G ++ DA
Sbjct: 182 G-SRAKEVGNVLTTSPLVRKISFTGSTNVGKILMKQSASTVKKVSMELGGNAPFIVFDDA 240
Query: 287 NRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTD 344
+ + + + F AGQ C+ + ++V + + E+ +L + + LKV G G
Sbjct: 241 DLDQAVEGAMASKFRNAGQTCVC-ANRLYVHDGIYDEFAKKLAEAVKKLKVGNGLDEGVT 299
Query: 345 LGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVGINVPIPVPLS 391
GP+I+ +A E++ I V++GA ++ G+ ++G N P LS
Sbjct: 300 QGPLINEKAVEKVEKHIADAVEKGAKVVTGGKRHELGGNFFEPTVLS 346
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 197 bits (502), Expect = 4e-58
Identities = 104/332 (31%), Positives = 164/332 (49%), Gaps = 7/332 (2%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT + +P AT ++++AV +A++A+ W KT+ R + L + ++ ++LA
Sbjct: 3 NPATEATIGEIPAATAEDVDAAVRAARRAFPRWKKTTGAERAKYLRAIAEGVRERREELA 62
Query: 111 ENITEEQGKTLADAE---GDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLG 167
E + GK L +A DV + + ++D R P+G
Sbjct: 63 ELEARDNGKPLDEAAWDVDDVAGCFEYYADLAEQLDAKAERAVPLPSEDFKARVRREPVG 122
Query: 168 VTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNV 227
V ITP+NFP ++ W A+A G T V+KPSE + L ++ +AG PPGV+NV
Sbjct: 123 VVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEAGLPPGVLNV 182
Query: 228 IHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
+ G +A + HP I ISF GS G + + A++ K V +G K+ ++ DA
Sbjct: 183 VTGTGDEAGAPLAAHPGIDKISFTGSTATGSQVMQAAAQDIKPVSLELGGKSPIIVFDDA 242
Query: 287 NRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTD 344
+ + + F GQ C A S ++ V E++ +L L AEA++V G
Sbjct: 243 DLEKAVEWAMFGCFWNNGQICSATSRLL-VHESIADAFLERLATAAEAIRVGDPLEEGVR 301
Query: 345 LGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
LGP++S E++LS I G +EGA LL GR
Sbjct: 302 LGPLVSQAQYEKVLSFIARGKEEGARLLCGGR 333
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 197 bits (502), Expect = 5e-58
Identities = 101/332 (30%), Positives = 169/332 (50%), Gaps = 7/332 (2%)
Query: 49 LHNPATNEVVTRVPKATPAEMESAVASAKKAYET-WSKTSIITRQQVLFRLQNIIKANMK 107
+ +P+T EV R+ + A+++ AV +A++A+E+ W + S R ++L R+ +I+ +
Sbjct: 1 VFDPSTGEVFARIARGGAADVDRAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHAD 60
Query: 108 QLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLG 167
+LA + + GK L A DV + E + GET+ + +++ R P G
Sbjct: 61 ELARLESLDTGKPLTQARADVEAAARYFEYYGGAADKLHGETIP-LGPGYFVYTVREPHG 119
Query: 168 VTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNV 227
VT I P+N+P I A+A GN V+KP+E P + L ++ +AG P G +NV
Sbjct: 120 VTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGALNV 179
Query: 228 IHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
+ G +A + HP + ISF GS + G + A+N V +G K+ ++ +DA
Sbjct: 180 VTGLGAEAGAALVAHPGVDHISFTGSVETGIAVMRAAAENVVPVTLELGGKSPQIVFADA 239
Query: 287 NRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTD 344
+ L +V A AGQ C A S ++ V ++ E L L +R AL+V G + D
Sbjct: 240 DLEAALPVVVNAIIQNAGQTCSAGSRLL-VHRSIYDEVLERLVERFRALRVGPG-LEDPD 297
Query: 345 LGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
LGP+IS + +R+ + GA ++ GR
Sbjct: 298 LGPLISAKQLDRVEGFVARARARGARIVAGGR 329
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 194 bits (495), Expect = 8e-57
Identities = 110/355 (30%), Positives = 186/355 (52%), Gaps = 14/355 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET-WSKTSI 88
T L+I+ +FV+S + I NP+T EV+ V A +++ AV +A+KA+E+ WSK +
Sbjct: 8 TGLFINNEFVKSSDGETIKTVNPSTGEVIASVYAAGEEDVDKAVKAARKAFESWWSKVTG 67
Query: 89 ITRQQVLFRLQNIIKANMKQLAENITEEQGKTL-ADAEGDVLRGLQVVEQCCSIPTIMQG 147
R ++L +L ++++ N LA + GK ++A GD+ + V+ +QG
Sbjct: 68 EERGELLDKLADLVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIRYYAGWADKIQG 127
Query: 148 ETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDP 205
+T+ +Y P GV I P+N+P + W A+A GNT VIKP+E P
Sbjct: 128 KTIPTSPNK---LAYTLHEPYGVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAENTP 184
Query: 206 GACMMLVDMLTQAGCPPGVVNVIHGAHDAV--NFICDHPDIRAISFVGSDQAGKYIYERG 263
+ + +++ +AG PPGVVN+I G + AV + + +HPD+ I+F GS G+ + +
Sbjct: 185 LSLLYFANLVKEAGFPPGVVNIIPG-YGAVAGSALAEHPDVDKIAFTGSTATGRLVMKAA 243
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
A+N K V G K+ ++ DA+ + +GQ C A S I+V E++ +
Sbjct: 244 AQNLKAVTLECGGKSPALVFEDADLDQAVKWAAAGIMYNSGQNCTATSR-IYVQESIYDK 302
Query: 322 WLPELKKRA-EALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
++ + + + KV + T +GP +S +R+LS I+ G EGA L+ G
Sbjct: 303 FVEKFVEHVKQNYKVGSPFDDDTVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGG 357
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 194 bits (494), Expect = 1e-56
Identities = 110/352 (31%), Positives = 178/352 (50%), Gaps = 12/352 (3%)
Query: 33 YIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYE-TWSKTSIITR 91
+I+G FVES T NP V+ RV +A AE+++AVA+A+ A + W K ++ R
Sbjct: 4 FINGAFVESGKT--FANINPVDGRVIARVHEAGAAEVDAAVAAARAALKGPWGKMTVAER 61
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPTIMQGETL 150
+L+ + + I+ + GK + A D+ RG + E
Sbjct: 62 ADLLYAVADEIERRFDDFLAAEVADTGKPRSLASHLDIPRGAANFRVFADVVKNAPTECF 121
Query: 151 AGVAKD-MDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGA 207
D +Y R PLGV I+P+N P ++ W A+ACGNT V+KPSE PG
Sbjct: 122 EMATPDGKGALNYAVRKPLGVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPGT 181
Query: 208 CMMLVDMLTQAGCPPGVVNVIH--GAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAK 265
+L +++ G P GV NV+H G A F+ HP + AI+F G + G I + A
Sbjct: 182 ATLLGEVMNAVGVPKGVYNVVHGFGPDSAGEFLTRHPGVDAITFTGETRTGSAIMKAAAD 241
Query: 266 NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWL 323
K V +G KN ++ +D + + ++ +AF GQ C+ + ++V + ++
Sbjct: 242 GVKPVSFELGGKNAAIVFADCDFDAAVAGILRSAFLNTGQVCLG-TERVYVERPIFDRFV 300
Query: 324 PELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
LK RAE+LK+ + P T++GP+IS + ++++LS V+EGAT++ G
Sbjct: 301 AALKARAESLKIGVPDDPATNMGPLISAEHRDKVLSYYALAVEEGATVVTGG 352
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 192 bits (490), Expect = 2e-56
Identities = 108/334 (32%), Positives = 177/334 (52%), Gaps = 12/334 (3%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTSIITRQQVLFRLQNIIKANMK 107
+PA VV R + T ++++AVA+A+KA++ W + S R VL ++ ++I+A +
Sbjct: 2 RSPAHGVVVARYAEGTVEDVDAAVAAARKAFDKGPWPRMSGAERAAVLLKVADLIRARRE 61
Query: 108 QLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLG 167
+LA T E GK ++ A G++ + S+ + G++ + DM R P+G
Sbjct: 62 RLALIETLESGKPISQARGEIEGAADLWRYAASLARTLHGDSYNNLGDDMLGLVLREPIG 121
Query: 168 VTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNV 227
V ITP+NFP +I P A+A G T V+KPSE G +ML ++L +AG P GVVN+
Sbjct: 122 VVGIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTSGTTLMLAELLIEAGLPAGVVNI 181
Query: 228 IHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
+ G V + +HPD+ +SF GS + GK I A+N K+V +G KN ++ +DA
Sbjct: 182 VTGYGATVGQAMTEHPDVDMVSFTGSTRVGKAIAAAAARNLKKVSLELGGKNPQIVFADA 241
Query: 287 NRSNTLNQLVGAAFGA---AGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVP 341
+ + FG AG+ C + S + V E++ ++ + R+ ++V P
Sbjct: 242 DLDAAAD---AVVFGVYFNAGECCNSGSR-LLVHESIADAFVAAVVARSRKVRVGDPLDP 297
Query: 342 GTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
T +G +I+ +I + +G EGATLLL G
Sbjct: 298 ETKVGAIINEAQLAKITDYVDAGRAEGATLLLGG 331
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 191 bits (487), Expect = 9e-56
Identities = 105/345 (30%), Positives = 177/345 (51%), Gaps = 7/345 (2%)
Query: 36 GKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVL 95
G++ + + ID+ NP T E + +P A+ +++ A +A A + W+ T R ++L
Sbjct: 1 GEWRDGTSERTIDVLNPYTGETLAEIPAASKEDVDEAYRAAAAAQKEWAATLPQERAEIL 60
Query: 96 FRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAK 155
+ I++ ++ E + E G T A + + + + + P M+G L
Sbjct: 61 EKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITREAATFPLRMEGRILPSDVP 120
Query: 156 DMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDP--GACMMLVD 213
+ YR PLGV I+P+NFP + + A+A GN V+KP+ P G ++L
Sbjct: 121 GKENRVYREPLGVVGVISPWNFPLHLSMRSVAPALALGNAVVLKPASDTPITGG-LLLAK 179
Query: 214 MLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQS 272
+ +AG P GV+NV+ GA + + +HP R ISF GS G++I E ++ K+V
Sbjct: 180 IFEEAGLPKGVLNVVVGAGSEIGDAFVEHPVPRLISFTGSTPVGRHIGELAGRHLKKVAL 239
Query: 273 NMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRA 330
+G N V++ DA+ +N V F GQ CMA++ +I V E V E++ + +R
Sbjct: 240 ELGGNNPFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRII-VHEDVYDEFVEKFVERV 298
Query: 331 EALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
+AL + P T +GP+I+ + +L I+ V+EGATLL+ G
Sbjct: 299 KALPYGDPSDPDTVVGPLINESQVDGLLDKIEQAVEEGATLLVGG 343
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 190 bits (485), Expect = 1e-55
Identities = 106/341 (31%), Positives = 167/341 (48%), Gaps = 23/341 (6%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
+PAT E + VP A+ A++++AVA+A A+ +W +T+ R + L +L + I+ N ++LA
Sbjct: 3 DPATGEEIATVPDASAADVDAAVAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEELA 62
Query: 111 ENITEEQGKTLADAEGDVLRGLQVVEQ-------CCSIPTIMQGETLAGVAKDMDIHSY- 162
+ GK L D L G V+ ++ GE L G S
Sbjct: 63 ALESRNTGKPLHLVRDDELPG--AVDNFRFFAGAARTLEGPAAGEYLPGHT------SMI 114
Query: 163 -RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCP 221
R P+GV A I P+N+P M+ W A+A GNT V+KPSE P ++L + L P
Sbjct: 115 RREPIGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAE-LAAEVLP 173
Query: 222 PGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHG 280
PGVVNV+ G + + + HP +R +S GS + GK + A KRV +G K
Sbjct: 174 PGVVNVVCGGGASAGDALVAHPRVRMVSLTGSVRTGKKVARAAADTLKRVHLELGGKAPV 233
Query: 281 VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAG 338
++ DA+ + + A + AGQ C A V V E+V E++ L + A++V
Sbjct: 234 IVFDDADLDAAVAGIATAGYYNAGQDCTAACRVY-VHESVYDEFVAALVEAVSAIRVGDP 292
Query: 339 NVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLK 379
+ T++GP+ S +ER+ + A +L GR +
Sbjct: 293 DDEDTEMGPLNSAAQRERVAGFV-ERAPAHARVLTGGRRAE 332
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 191 bits (486), Expect = 2e-55
Identities = 112/356 (31%), Positives = 170/356 (47%), Gaps = 23/356 (6%)
Query: 32 LYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
L I+G+ VE++ I NP +EVV V KA+ E A+ +A KA+E W KT
Sbjct: 35 LVINGERVETEN--KIVSINPCDKSEVVGTVSKASQEHAEHALQAAAKAFEAWKKTDPEE 92
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETL 150
R +LF+ I++ + + + +E GK +A+ +V + +E Q L
Sbjct: 93 RAAILFKAAAIVRRRRHEFSALLVKEVGKPWNEADAEVAEAIDFMEYYAR-----QMIEL 147
Query: 151 AGVAKDMDIHSYR-----VPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDP 205
A P GVT I+P+NFP I + M I GN V+KP+E P
Sbjct: 148 AKGKPVNSREGETNQYVYTPTGVTVVISPWNFPFAIMVGMTVAPIVTGNCVVLKPAEAAP 207
Query: 206 GACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGA 264
V++L +AG P GVV + G+ V +++ DHP I+F GS + G I+ER A
Sbjct: 208 VIAAKFVEILEEAGLPKGVVQFVPGSGSEVGDYLVDHPKTSLITFTGSREVGTRIFERAA 267
Query: 265 K------NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE 318
K + KRV + MG K+ ++ DA+ +AFG AGQ+C A S + V E
Sbjct: 268 KVQPGQKHLKRVIAEMGGKDTVIVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAV-VHE 326
Query: 319 AV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLL 372
V E + + E+LKV + +GPVI ++ +I+ I+ G EG +
Sbjct: 327 KVYDEVVERFVEITESLKVGPPDSADVYVGPVIDQKSFNKIMEYIEIGKAEGRLVS 382
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 189 bits (482), Expect = 5e-55
Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 24/342 (7%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYETWS-KTSIITRQQVLFRLQNIIKANMKQ 108
NPAT EV+ P A A++++A+A+A++A++T T R + L +L ++A ++
Sbjct: 2 INPATEEVIGTAPDAGAADVDAAIAAARRAFDTGDWSTDAEERARCLRQLHEALEARKEE 61
Query: 109 LAENITEEQGKTLADAE--------GDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIH 160
L + E G + A G + + + + L G +
Sbjct: 62 LRALLVAEVGAPVMTARAMQVDGPIGHLRYFADLADSF-PWEFDLPVPALRGGPGRRVVR 120
Query: 161 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGC 220
R P+GV A ITP+NFP + L A+A GNT V+KP+ P + ++L +++ +
Sbjct: 121 --REPVGVVAAITPWNFPFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEIIAETDL 178
Query: 221 PPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNH 279
P GVVNV+ G+ +AV + P + +SF GS G+ I + A KRV +G K+
Sbjct: 179 PAGVVNVVTGSDNAVGEALTTDPRVDMVSFTGSTAVGRRIMAQAAATLKRVLLELGGKSA 238
Query: 280 GVIMSDANRSNTLNQLVGAAFG----AAGQRCMALSTVIFVGEAV--EWLPELKKRAEAL 333
+++ DA+ L AA G AGQ C AL+T + V + E + L EAL
Sbjct: 239 NIVLDDAD----LAAAAPAAVGVCMHNAGQGC-ALTTRLLVPRSRYDEVVEALAAAFEAL 293
Query: 334 KVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
V PGT +GP+IS ++R+ I G DEGA L+ G
Sbjct: 294 PVGDPADPGTVMGPLISAAQRDRVEGYIARGRDEGARLVTGG 335
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 188 bits (480), Expect = 7e-55
Identities = 97/337 (28%), Positives = 158/337 (46%), Gaps = 10/337 (2%)
Query: 47 IDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANM 106
+D+HNP EV+ +VP A+ E A+A+A+ E R +L R +++K
Sbjct: 1 LDVHNPYDGEVIGKVPADDRADAEEALATARAGAENRRALPPHERMAILERAADLLKKRA 60
Query: 107 KQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVA----KDMDIHSY 162
++ A+ I E GK + DA +V R + + ++GE + A + +
Sbjct: 61 EEFAKIIACEGGKPIKDARVEVDRAIDTLRLAAEEAERIRGEEIPLDATQGSDNRLAWTI 120
Query: 163 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPP 222
R P+GV ITPFNFP + AIA G V+KP+ + P + + L +L +AG P
Sbjct: 121 REPVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEAGVPE 180
Query: 223 GVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGV 281
GV+ V+ G + + +SF GS G+ + GKR+ +G +
Sbjct: 181 GVLQVVTGEREVLGDAFAADERVAMLSFTGSAAVGEALRANAG--GKRIALELGGNAPVI 238
Query: 282 IMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGN 339
+ DA+ + L F AGQ C+++ I+V E + E++ + LKV
Sbjct: 239 VDRDADLDAAIEALAKGGFYHAGQVCISVQR-IYVHEELYDEFIEAFVAAVKKLKVGDPL 297
Query: 340 VPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
TD+GP+IS +A ER+ ++ V+ GA LL G
Sbjct: 298 DEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGGE 334
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 188 bits (480), Expect = 8e-55
Identities = 110/345 (31%), Positives = 168/345 (48%), Gaps = 27/345 (7%)
Query: 47 IDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANM 106
+++ NP T EVV RV A P ++E A+A+A KA+ R +L ++
Sbjct: 1 LEVTNPYTGEVVARVALAGPDDIEEAIAAAVKAFRPMRALPAHRRAAILLHCVARLEERF 60
Query: 107 KQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSI-PTIMQGETLAGVAKDMDIHS---- 161
++LAE I E GK + DA G+V R + + T + GE L +DI +
Sbjct: 61 EELAETIVLEAGKPIKDARGEVAR-AIDTFRIAAEEATRIYGEVL-----PLDISARGEG 114
Query: 162 -----YRVPLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPSERDPGACMMLVDM 214
R P+G + ITPFNFP + L V AIA G V+KP+ R P + ++L ++
Sbjct: 115 RQGLVRRFPIGPVSAITPFNFP--LNLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEV 172
Query: 215 LTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNM 274
L + G P G +V+ + D + + I+ +SF GS G + R K K+V +
Sbjct: 173 LAETGLPKGAFSVLPCSRDDADLLVTDERIKLLSFTGSPAVGWDLKARAGK--KKVVLEL 230
Query: 275 GAKNHGVIM-SDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAE 331
G N VI+ SDA+ +++ AF AGQ C+++ + V +V E+ L R +
Sbjct: 231 GG-NAAVIVDSDADLDFAAQRIIFGAFYQAGQSCISVQR-VLVHRSVYDEFKSRLVARVK 288
Query: 332 ALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
ALK TD+GP+IS ER+ + VD GA LL G+
Sbjct: 289 ALKTGDPKDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGGK 333
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 189 bits (481), Expect = 8e-55
Identities = 116/359 (32%), Positives = 185/359 (51%), Gaps = 14/359 (3%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYE---TW 83
I TK++I+ ++ +S + NPAT E + V + A+++ AV +A+ A++ W
Sbjct: 4 IKYTKIFINNEWHDSVSGKTFPTINPATGEKICEVQEGDKADVDKAVKAARAAFKLGSPW 63
Query: 84 SKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA-EGDVLRGLQVVEQCCSIP 142
R ++L +L ++I+ + LA T + GK + + D+ ++V+
Sbjct: 64 RTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLVDLPGAIKVLRYYAGWA 123
Query: 143 TIMQGETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 200
+ G+T + D D +Y P+GV I P+NFP ++ W A+ACGNT V+KP
Sbjct: 124 DKIHGKT---IPMDGDFFTYTRHEPVGVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKP 180
Query: 201 SERDPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYI 259
+E+ P + L ++ +AG PPGVVNV+ G A I HPDI ++F GS + GK I
Sbjct: 181 AEQTPLTALYLASLIKEAGFPPGVVNVVPGYGPTAGAAISSHPDIDKVAFTGSTEVGKLI 240
Query: 260 YERGAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE 318
+ K N KRV +G K+ ++ +DA+ + Q A F GQ C A S FV E
Sbjct: 241 QQAAGKSNLKRVTLELGGKSPNIVFADADLDYAVEQAHEALFFNMGQCCCAGSRT-FVQE 299
Query: 319 AV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
++ E++ +RA+ V P T+ GP I + ++IL LI+SG EGA L G
Sbjct: 300 SIYDEFVKRSVERAKKRVVGNPFDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGG 358
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 187 bits (477), Expect = 3e-54
Identities = 106/348 (30%), Positives = 169/348 (48%), Gaps = 25/348 (7%)
Query: 28 ATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTS 87
TKL I+G+ V + ++NPAT EV+ + +A+ A++++AVA+A A+ WS+T+
Sbjct: 1 MQTKLLINGELVAGEGEKQ-PVYNPATGEVLAEIAEASAAQVDAAVAAADAAFPEWSQTT 59
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGK----TLAD---AEGDVLRGLQVVEQCCS 140
R + L +L + I+ N + A + GK L D A DV R +C
Sbjct: 60 PKERAEALLKLADAIEENADEFARLESLNCGKPLHLALNDEIPAIVDVFRFFAGAARCLE 119
Query: 141 IPTIMQGETLAGVAKDMDIH-SY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHV 197
GE L G H S R P+GV A I P+N+P M+ W A+A GNT V
Sbjct: 120 GKA--AGEYLEG-------HTSMIRRDPVGVVASIAPWNYPLMMAAWKLAPALAAGNTVV 170
Query: 198 IKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAG 256
+KPSE P + L ++ PPGV+NV+ G V + + HP +R +S GS G
Sbjct: 171 LKPSEITPLTALKLAELAADI-LPPGVLNVVTGRGATVGDALVGHPKVRMVSLTGSIATG 229
Query: 257 KYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFV 316
K++ A + KR +G K ++ DA+ + + + AGQ C A + I+
Sbjct: 230 KHVLSAAADSVKRTHLELGGKAPVIVFDDADLDAVVEGIRTFGYYNAGQDCTA-ACRIYA 288
Query: 317 GEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQ 362
+ + + +L LKV + T+LGP+IS ++R+ ++
Sbjct: 289 QRGIYDDLVAKLAAAVATLKVGDPDDEDTELGPLISAAHRDRVAGFVE 336
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 185 bits (471), Expect = 2e-53
Identities = 113/360 (31%), Positives = 187/360 (51%), Gaps = 9/360 (2%)
Query: 24 IRHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET- 82
++ T L+I+G+FV+S + ++NP+T +++T++ +AT A+++ AV A A+ET
Sbjct: 1 GKYEQPTGLFINGEFVDSVHGGTVKVYNPSTGKLITKIAEATEADVDIAVEVAHAAFETD 60
Query: 83 WS-KTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKT-LADAEGDVLRGLQVVEQCCS 140
W K S R + L +L ++++ N+ LA + GKT DV
Sbjct: 61 WGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFRYYGG 120
Query: 141 IPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 200
+ G+ + K + ++ P+GV I P+NFP ++ W A+A GNT V+KP
Sbjct: 121 WADKIHGQVIETDIKKL-TYTRHEPIGVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKP 179
Query: 201 SERDPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYI 259
SE P + + + ++ +AG PPGV+NV+ G N I H DI ++F GS G+ +
Sbjct: 180 SELTPLSALYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHMDIDKVAFTGSTLVGRKV 239
Query: 260 YERGAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE 318
E AK N K+V +G K+ ++ DA+ + + F GQ C A + I+V E
Sbjct: 240 MEAAAKSNLKKVTLELGGKSPNIVFDDADLESAVVWTAYGIFFNHGQVCCA-GSRIYVQE 298
Query: 319 AV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ +++ K++A+ LKV T GP +S ERI+S I+SG EGAT+ G+
Sbjct: 299 GIYDKFVKRFKEKAKKLKVGDPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGK 358
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 182 bits (465), Expect = 1e-52
Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 32/346 (9%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYE--TWSKTSIITRQQVLFRLQNIIKANMK 107
NPAT V+ V A+++ AVA+A++A+E WS+ S R+ VL RL ++I+A+
Sbjct: 7 INPATGRVLAEVAACDAADVDRAVAAARRAFESGVWSRLSPAERKAVLLRLADLIEAHRD 66
Query: 108 QLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTI---------MQGETLAGVAKDMD 158
+LA T + GK ++DA + + T + GE A D
Sbjct: 67 ELALLETLDMGKPISDALAVDVPS--------AANTFRWYAEAIDKVYGEV-APTGPDAL 117
Query: 159 IHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQA 218
R PLGV + P+NFP ++ W A+A GN+ V+KP+E+ P + L ++ +A
Sbjct: 118 ALITREPLGVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALEA 177
Query: 219 GCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAK-NGKRVQSNMGA 276
G P GV+NV+ G H A + H D+ A++F GS + G+ E + N KRV G
Sbjct: 178 GLPAGVLNVVPGFGHTAGEALGLHMDVDALAFTGSTEVGRRFLEYSGQSNLKRVWLECGG 237
Query: 277 KNHGVIMSDANRSNTLNQLV-GAAFGA---AGQRCMALSTVIFVGEAV--EWLPELKKRA 330
K+ ++ +DA L+ AA G G+ C A S ++ V E++ E+L ++ A
Sbjct: 238 KSPNIVFADA---PDLDAAAEAAAAGIFWNQGEVCSAGSRLL-VHESIKDEFLEKVVAAA 293
Query: 331 EALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
K P T +G ++S +++L I+SG EGA L+ G+
Sbjct: 294 REWKPGDPLDPATRMGALVSEAHFDKVLGYIESGKAEGARLVAGGK 339
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 180 bits (459), Expect = 6e-52
Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 7/325 (2%)
Query: 56 EVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITE 115
V+ V A A+++ A A A A W+ T R VL R ++++ + ++A+ I
Sbjct: 2 AVLGEVGVADAADVDRAAARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIVR 61
Query: 116 EQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPF 175
E G A +V + + + +PT QGE L + + + RVPLGV I+PF
Sbjct: 62 ESGSIRPKAGFEVGAAIGELHEAAGLPTQPQGEILPSAPGRLSL-ARRVPLGVVGVISPF 120
Query: 176 NFPAMIPLWMFPVAIACGNTHVIKPSERDP--GACMMLVDMLTQAGCPPGVVNVIHGAHD 233
NFP ++ + A+A GN V+KP R P G +++ + +AG P GV++V+ G D
Sbjct: 121 NFPLILAMRSVAPALALGNAVVLKPDPRTPVSGG-VVIARLFEEAGLPAGVLHVLPGGAD 179
Query: 234 AVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLN 293
A + + P++ ISF GS G+ + E ++ K+V +G KN +++ DA+ +
Sbjct: 180 AGEALVEDPNVAMISFTGSTAVGRKVGEAAGRHLKKVSLELGGKNALIVLDDADLDLAAS 239
Query: 294 QLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISP 351
AF GQ CMA + V E+V + +L +A+ L V LGP+I+
Sbjct: 240 NGAWGAFLHQGQICMA-AGRHLVHESVADAYTAKLAAKAKHLPVGDPATGQVALGPLINA 298
Query: 352 QAKERILSLIQSGVDEGATLLLDGR 376
+ +R+ +++ V GA L G
Sbjct: 299 RQLDRVHAIVDDSVAAGARLEAGGT 323
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 180 bits (458), Expect = 2e-51
Identities = 106/356 (29%), Positives = 178/356 (50%), Gaps = 15/356 (4%)
Query: 31 KLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
L+I+G++V+ + + ID +NPA E ++ + AT A+++ AV +A++A++TW KT++
Sbjct: 2 GLFINGEWVKGSSGETIDSYNPANGETLSEITDATDADVDRAVKAAQEAFKTWRKTTVAE 61
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPTIMQGET 149
R +L ++ +II N + LA T + GK + + D+ + I E
Sbjct: 62 RANILNKIADIIDENKELLAMVETLDNGKPIRETRAVDIPLAADHFRYFAGV--IRAEE- 118
Query: 150 LAGVAKDMDIHSY----RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDP 205
G A +D + R P+GV I P+NFP ++ W A+A GNT VIKPS
Sbjct: 119 --GSANMIDEDTLSIVLREPIGVVGQIIPWNFPFLMAAWKLAPALAAGNTVVIKPSSTTS 176
Query: 206 GACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGA 264
+ + L ++ P GVVN++ G + ++ +HP + ++F GS + G+ + A
Sbjct: 177 LSLLELAKIIQDV-LPKGVVNIVTGKGSKSGEYLLNHPGLDKLAFTGSTEVGRDVAIAAA 235
Query: 265 KNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EW 322
K +G K+ +I DAN L GQ C A S IFV E + E+
Sbjct: 236 KKLIPATLELGGKSANIIFDDANWDKALEGAQLGILFNQGQVCCAGSR-IFVQEGIYDEF 294
Query: 323 LPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNL 378
+ +LK++ E +KV P T +G ++ ++ILS + +EGA +L G L
Sbjct: 295 VAKLKEKFENVKVGNPLDPDTQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRL 350
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 178 bits (453), Expect = 9e-51
Identities = 107/366 (29%), Positives = 179/366 (48%), Gaps = 34/366 (9%)
Query: 31 KLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
+I+G++V ++ D +NP +V+ +P++T +++ AV +A +A++TW KTS+
Sbjct: 2 DNFINGEWVAPSKGEYFDNYNPVNGKVLCEIPRSTAEDVDLAVDAAHEAFKTWGKTSVAE 61
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGK-----TLAD--AEGDVLRGLQVVEQCCSIPT 143
R +L ++ + I+ N++ LA T + GK AD D R V
Sbjct: 62 RANILNKIADRIEENLELLAVAETLDNGKPIRETLAADIPLAIDHFRYFAGV-------- 113
Query: 144 IMQGETLAGVAKDMD-----IHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVI 198
I E G ++D H + PLGV I P+NFP ++ W A+A GNT V+
Sbjct: 114 IRAQE---GSLSEIDEDTLSYH-FHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNTVVL 169
Query: 199 KPSERDPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGK 257
KP+ + P + ++L++++ P GVVNV+ G +A + HP I ++F GS G+
Sbjct: 170 KPASQTPLSILVLMELIGDL-LPKGVVNVVTGFGSEAGKPLASHPRIAKLAFTGSTTVGR 228
Query: 258 YIYERGAKNGKRVQSNMGAKNHGVIMSDA--NRSNTLNQLVGAAFGAA---GQRCMALST 312
I + A+N V +G K+ + DA + ++ G A G+ C S
Sbjct: 229 LIMQYAAENLIPVTLELGGKSPNIFFDDAMDADDDFDDKAEEGQLGFAFNQGEVCTCPSR 288
Query: 313 VIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGAT 370
V E++ E++ +R EA+KV P T +G +S E+ILS + G +EGA
Sbjct: 289 -ALVQESIYDEFIERAVERFEAIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAE 347
Query: 371 LLLDGR 376
+L G
Sbjct: 348 VLTGGE 353
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 178 bits (453), Expect = 2e-50
Identities = 116/385 (30%), Positives = 187/385 (48%), Gaps = 19/385 (4%)
Query: 26 HIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--- 82
+ +L+I G++ E I + NPAT E + +P AT ++++AV +A+KA++
Sbjct: 4 PVPRRQLFIGGEWREPVLGKRIPVVNPATEETIGDIPAATAEDVDAAVEAARKAFKRNKG 63
Query: 83 --WSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCS 140
W++T+ R + L + I +LA+ T + GK L +A D+ E
Sbjct: 64 KDWARTTGAVRAKYLRAIAAKITERKSELAKLETLDCGKPLDEAAWDMDDVAGCFEYYAD 123
Query: 141 IPTIMQGETLAGVAKDMD---IHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHV 197
+ + + A V+ M+ + + PLGV ITP+N+P ++ W A+A G T V
Sbjct: 124 LAEALDAKQKAPVSLPMETFKGYVLKEPLGVVGLITPWNYPLLMATWKVAPALAAGCTAV 183
Query: 198 IKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAG 256
+KPSE C+ L D+ + G PPGV+NV+ G +A + HP + I+F GS G
Sbjct: 184 LKPSELASVTCLELADICREVGLPPGVLNVVTGLGTEAGAPLASHPGVDKIAFTGSTATG 243
Query: 257 KYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFV 316
+ I A+ K V +G K+ ++ D + + + F GQ C A S + V
Sbjct: 244 RKIMTAAAQMVKPVSLELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQICSATSRL-LV 302
Query: 317 GEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLD 374
E + E+L +L K A+ +K+S G LGPV+S E++L I + EGAT+L
Sbjct: 303 HERIASEFLEKLVKWAKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISTAKSEGATILCG 362
Query: 375 G---RNLKVGI----NVPIPVPLSM 392
G +LK G + V SM
Sbjct: 363 GKRPEHLKKGFFIEPTIITDVTTSM 387
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 175 bits (445), Expect = 6e-50
Identities = 93/325 (28%), Positives = 158/325 (48%), Gaps = 14/325 (4%)
Query: 70 ESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVL 129
+ AV +A A+ WSKT R+ +L + +++++ + E + EE G T A A +V
Sbjct: 3 DQAVEAAAAAFPAWSKTPPSERRDILLKAADLLESRRDEFIEAMMEETGATAAWAGFNVD 62
Query: 130 RGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVA 189
++ + S+ T + G ++ + P+GV GI P+N P ++
Sbjct: 63 LAAGMLREAASLITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAPWNAPVILGTRAIAYP 122
Query: 190 IACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIH----GAHDAVNFICDHPDIR 245
+A GNT V+K SE P ++ + +AG P GV+NV+ A + V + HP +R
Sbjct: 123 LAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLNVVTHSPEDAPEVVEALIAHPAVR 182
Query: 246 AISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQ 305
++F GS + G+ I E AK+ K V +G K +++ DA+ N + AF +GQ
Sbjct: 183 KVNFTGSTRVGRIIAETAAKHLKPVLLELGGKAPAIVLEDADLDAAANAALFGAFLNSGQ 242
Query: 306 RCMALST-VIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQ 362
CM ST I V E++ E++ +LK AE L LG ++S A +R+ L+
Sbjct: 243 ICM--STERIIVHESIADEFVEKLKAAAEKLFAGP-----VVLGSLVSAAAADRVKELVD 295
Query: 363 SGVDEGATLLLDGRNLKVGINVPIP 387
+ +GA L++ G + +P
Sbjct: 296 DALSKGAKLVVGGLADESPSGTSMP 320
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 175 bits (444), Expect = 1e-49
Identities = 108/371 (29%), Positives = 192/371 (51%), Gaps = 14/371 (3%)
Query: 17 MKTFRQFIRHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASA 76
FRQ + I+G+++++ + ID+ NPA + + VPK E +A+ +A
Sbjct: 6 STLFRQ--------QALINGEWLDANNGEVIDVTNPANGDKLGSVPKMGADETRAAIDAA 57
Query: 77 KKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVE 136
+A W + R +L R N++ + LA +T EQGK LA+A+G++ +E
Sbjct: 58 NRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIE 117
Query: 137 QCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNT 195
+ G+T+ G D + + P+GVTA ITP+NFP AMI P A+A G T
Sbjct: 118 WFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGP-ALAAGCT 176
Query: 196 HVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQ 254
V+KP+ + P + + L ++ +AG P GV NV+ G+ AV + +P +R +SF GS +
Sbjct: 177 MVLKPASQTPFSALALAELAIRAGIPAGVFNVVTGSAGAVGGELTSNPLVRKLSFTGSTE 236
Query: 255 AGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVI 314
G+ + E+ AK+ K+V +G ++ DA+ + + + F AGQ C+ + +
Sbjct: 237 IGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVC-ANRL 295
Query: 315 FVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLL 372
+V + V + +L++ L + G G +GP+I +A ++ I +++GA ++
Sbjct: 296 YVQDGVYDRFAEKLQQAVSKLHIGDGLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVV 355
Query: 373 LDGRNLKVGIN 383
G+ ++G N
Sbjct: 356 CGGKAHELGGN 366
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 172 bits (437), Expect = 2e-48
Identities = 100/343 (29%), Positives = 181/343 (52%), Gaps = 19/343 (5%)
Query: 32 LYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR 91
+I+GK+V+ + NPAT EV+ V +A ++++AVA+A+ A+E+WS R
Sbjct: 24 HFINGKWVKPENRKSFPTINPATGEVLASVLQAEEEDVDAAVAAARTAFESWSALPGHVR 83
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQG-ETL 150
+ L+R+ I+ + + A + + GK + ++ C IP + +
Sbjct: 84 ARHLYRIARHIQKHQRLFAVLESLDNGKPIRESRD------------CDIPLVARHFYHH 131
Query: 151 AGVAK--DMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGAC 208
AG A+ D ++ ++ P+GV I P+NFP ++ W A+A GNT V+KP+E P
Sbjct: 132 AGWAQLLDTELAGWK-PVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTA 190
Query: 209 MMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGK 268
++ ++ +AG PPGV+N++ G + + +HP + ++F GS + G+ + A GK
Sbjct: 191 LLFAEICAEAGLPPGVLNIVTGNGSFGSALANHPGVDKVAFTGSTEVGRALRRATAGTGK 250
Query: 269 RVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPEL 326
++ +G K+ ++ DA+ + + +V A + GQ C A S ++ V E+V E + +L
Sbjct: 251 KLSLELGGKSPFIVFDDADLDSAVEGIVDAIWFNQGQVCCAGSRLL-VQESVAEELIRKL 309
Query: 327 KKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGA 369
K+R L+V D+G ++ P +RI L++ G EGA
Sbjct: 310 KERMSHLRVGDPLDKAIDMGAIVDPAQLKRIRELVEEGRAEGA 352
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 169 bits (431), Expect = 7e-48
Identities = 89/332 (26%), Positives = 151/332 (45%), Gaps = 11/332 (3%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
+P V+ P A+ + +A+ A+ A + W + R+ ++ R ++ AN ++
Sbjct: 1 ISPIDGSVIAERPLASLEAVRAALERARAAQKGWRAVPLEERKAIVTRAVELLAANTDEI 60
Query: 110 AENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAG--VAKDMDIHSY--RVP 165
AE +T + G+ +A A G++ L+ SI E LA V + Y R P
Sbjct: 61 AEELTWQMGRPIAQAGGEIRGMLERARYMISIAE----EALADIRVPEKDGFERYIRREP 116
Query: 166 LGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVV 225
LGV I P+N+P + + A+ GN ++K S + P +AG P GV
Sbjct: 117 LGVVLIIAPWNYPYLTAVNAVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEGVF 176
Query: 226 NVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSD 285
V+H +H+ + P I +SF GS G+ I A +V +G K+ + D
Sbjct: 177 QVLHLSHETSAALIADPRIDHVSFTGSVAGGRAIQRAAAGRFIKVGLELGGKDPAYVRPD 236
Query: 286 ANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGT 343
A+ LV AF +GQ C ++ I+V E++ ++ + K+ P T
Sbjct: 237 ADLDAAAESLVDGAFFNSGQSCCSIER-IYVHESIYDAFVEAFVAVVKGYKLGDPLDPST 295
Query: 344 DLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
LGPV+S +A + + + I + +GA L+DG
Sbjct: 296 TLGPVVSARAADFVRAQIADAIAKGARALIDG 327
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 169 bits (429), Expect = 2e-47
Identities = 103/331 (31%), Positives = 168/331 (50%), Gaps = 9/331 (2%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT +V+ VP++ A+++ AVA+AK A+ W+ T R ++L R+ + ++A ++LA
Sbjct: 3 NPATGQVIGEVPRSRAADVDRAVAAAKAAFPEWAATPARERGKLLARIADALEARSEELA 62
Query: 111 ENITEEQGKTL-ADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVT 169
+ E G L A + + + ++GETL D+ ++ R PLGV
Sbjct: 63 RLLALETGNALRTQARPEAAVLADLFRYFGGLAGELKGETLPF-GPDVLTYTVREPLGVV 121
Query: 170 AGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIH 229
I P+N P M+ A+ GNT V+K +E P A ++L ++L Q P GV+NVI
Sbjct: 122 GAILPWNAPLMLAALKIAPALVAGNTVVLKAAEDAPLAVLLLAEILAQV-LPAGVLNVIT 180
Query: 230 G-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANR 288
G + + DHPD+ ++F GS + GK IY A V +G K+ ++ DA+
Sbjct: 181 GYGEECGAALVDHPDVDKVTFTGSTEVGKIIYRAAADRLIPVSLELGGKSPMIVFPDADL 240
Query: 289 SNTLNQLV-GAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDL 345
+ ++ + G F GQ C A S +FV E + +L +L + LK+ TD+
Sbjct: 241 DDAVDGAIAGMRFTRQGQSCTAGSR-LFVHEDIYDAFLEKLVAKLSKLKIGDPLDEATDI 299
Query: 346 GPVISPQAKERILSLIQSGVDE-GATLLLDG 375
G +IS + ++ I G+ GAT+L G
Sbjct: 300 GAIISEKQFAKVCGYIDLGLSTSGATVLRGG 330
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 167 bits (426), Expect = 2e-47
Identities = 96/317 (30%), Positives = 147/317 (46%), Gaps = 10/317 (3%)
Query: 68 EMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGD 127
++++AVA+A+ A+ W+ S+ R +L R ++KAN ++LA I+ E GK L +A+ +
Sbjct: 1 QVDAAVAAARAAFPGWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEAQTE 60
Query: 128 VLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRV---PLGVTAGITPFNFPAMIPLW 184
V + I E A M + P GV A PFNFP +P
Sbjct: 61 V----AAMAGKIDISIKAYHERTGERATPMAQGRAVLRHRPHGVMAVFGPFNFPGHLPNG 116
Query: 185 MFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDI 244
A+ GNT V KPSE P ++V++ +AG PPGV+N++ G + + H I
Sbjct: 117 HIVPALLAGNTVVFKPSELTPAVAELMVELWEEAGLPPGVLNLVQGGRETGEALAAHEGI 176
Query: 245 RAISFVGSDQAGKYIYERGAKN-GKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAA 303
+ F GS G ++ + A GK + MG N V+ A+ +V +AF A
Sbjct: 177 DGLLFTGSAATGLLLHRQFAGRPGKILALEMGGNNPLVVWDVADIDAAAYLIVQSAFLTA 236
Query: 304 GQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLI 361
GQRC +I AV +L L + A+ L++ A + +GP+I A R L
Sbjct: 237 GQRCTCARRLIVPDGAVGDAFLERLVEAAKRLRIGAPDAEPPFMGPLIIAAAAARYLLAQ 296
Query: 362 QSGVDEGATLLLDGRNL 378
Q + G LL L
Sbjct: 297 QDLLALGGEPLLAMERL 313
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 167 bits (425), Expect = 6e-47
Identities = 103/330 (31%), Positives = 172/330 (52%), Gaps = 7/330 (2%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT +V+ RVP A+ A+++ AVA+A+ A+ W T+ + R ++L L ++ + ++LA
Sbjct: 3 NPATGQVLARVPAASAADVDRAVAAARAAFPEWRATTPLERARMLRELATRLREHAEELA 62
Query: 111 ENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTA 170
+ G ++ GDV+ +++ + T ++GET+ +++ ++ R P GV A
Sbjct: 63 LIDALDCGNPVSAMLGDVMVAAALLDYFAGLVTELKGETIPVGGRNLH-YTLREPYGVVA 121
Query: 171 GITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHG 230
I FN P M +A GNT V+KP E+ P + + L + L + PPGV N++ G
Sbjct: 122 RIVAFNHPLMFAAAKIAAPLAAGNTVVVKPPEQAPLSALRLAE-LAREVLPPGVFNILPG 180
Query: 231 AHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRS 289
+ HPD++ I+ +GS G+ I A+ K V +G KN ++ DA+
Sbjct: 181 DGATAGAALVRHPDVKRIALIGSVPTGRAIMRAAAEGIKHVTLELGGKNALIVFPDADPE 240
Query: 290 NTLNQLV-GAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLG 346
+ V G F GQ C + S + FV E++ E L + +R A+KV P T +G
Sbjct: 241 AAADAAVAGMNFTWCGQSCGSTSRL-FVHESIYDEVLARVVERVAAIKVGDPTDPATTMG 299
Query: 347 PVISPQAKERILSLIQSGVDEGATLLLDGR 376
P++S Q +R++ I S EGA L+ G
Sbjct: 300 PLVSRQQYDRVMHYIDSAKREGARLVTGGG 329
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 168 bits (426), Expect = 6e-47
Identities = 100/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTS 87
+L+I+G+FV+++ + NP V+ +V AT +++ AVA+AK+A+E W K +
Sbjct: 6 HQLFINGEFVDAEGGKTYNTINPTDGSVICKVSLATVEDVDRAVAAAKEAFENGEWGKMN 65
Query: 88 IITRQQVLFRLQNIIKANMKQLA--ENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIM 145
R ++++RL ++++ + ++LA E++ TLA + V +Q +
Sbjct: 66 ARDRGRLMYRLADLMEEHQEELATIESLDSGAVYTLA-LKTHVGMSIQTFRYFAGWCDKI 124
Query: 146 QGETL----AGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 201
QG+T+ A +++ + + R P+GV + P+N+P M+ W +A GNT V+KP+
Sbjct: 125 QGKTIPINQARPNRNLTL-TKREPIGVCGIVIPWNYPLMMLAWKMAACLAAGNTVVLKPA 183
Query: 202 ERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIY 260
+ P + ++ +AG P GV+N++ G+ V + DHPD+R + F GS GK+I
Sbjct: 184 QVTPLTALKFAELTVKAGFPKGVINILPGSGSLVGQRLSDHPDVRKLGFTGSTPIGKHIM 243
Query: 261 ERGAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEA 319
+ A N K+V +G K+ +I +D + + + + F G+ C+A +FV E+
Sbjct: 244 KSCAVSNLKKVSLELGGKSPLIIFADCDMDKAVRMGMSSVFFNKGENCIAAGR-LFVEES 302
Query: 320 V--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRN 377
+ E++ + + + +K+ TD GP ++++ + GV EGATL+ G+
Sbjct: 303 IHDEFVRRVVEEVKKMKIGDPLDRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQ 362
Query: 378 L 378
+
Sbjct: 363 V 363
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 167 bits (425), Expect = 8e-47
Identities = 108/358 (30%), Positives = 180/358 (50%), Gaps = 13/358 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYE--TWSKTS 87
TKL+I+G+FV++ + +P EV+ V + +++ AV +A+KA++ W + +
Sbjct: 4 TKLFINGQFVDAASGKTFPTIDPRNGEVIAHVAEGDAEDVDRAVKAARKAFDEGPWPRMT 63
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAE-GDVLRGLQVVEQCCSIPTIMQ 146
R ++L R ++++ + +LA T + GK A +V ++ +
Sbjct: 64 GYERSRILLRFADLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFRYYAGWADKIH 123
Query: 147 GETLAGVAKDMDIHSYRV--PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERD 204
G TL D H Y + P+GV I P+NFP ++ W A+ACGNT V+KP+E+
Sbjct: 124 GMTLPA---DGPHHVYTLHEPIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQT 180
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNF-ICDHPDIRAISFVGSDQAGKYIYERG 263
P + ++ + +AG P GV+N++ G I H D+ ++F GS + GK I +
Sbjct: 181 PLSALLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASHMDVDKVAFTGSTEVGKIIMQLA 240
Query: 264 AK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-- 320
AK N K V +G K+ ++ DA+ + A F GQ C A S FV E++
Sbjct: 241 AKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRT-FVHESIYD 299
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNL 378
E++ + K RA V G + GP + + E+ILS I+ G +EGATL+ G +
Sbjct: 300 EFVEKAKARALKRVVGDPFRKGVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRI 357
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 164 bits (417), Expect = 9e-46
Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 31/342 (9%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYE--TWSKTSIITRQQVLFRLQNIIKANMKQ 108
+PAT EV+ AE E+A+A+A++A++ W+ + R +VL L + +AN ++
Sbjct: 3 DPATGEVIGTYADGGVAEAEAAIAAARRAFDETDWAHDPRL-RARVLLELADAFEANAER 61
Query: 109 LAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHS------- 161
LA + E GK L +A ++ G +I + AG+A+
Sbjct: 62 LARLLALENGKILGEARFEI-SG--------AISEL---RYYAGLARTEAGRMIEPEPGS 109
Query: 162 ----YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQ 217
R P+GV I P+N P ++ + A+A G T V+KP+ + ++ +L +
Sbjct: 110 FSLVLREPMGVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAE 169
Query: 218 A-GCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMG 275
P GVVN+ + + + PD+ ISF GS G+ I A KR+ +G
Sbjct: 170 IPSLPAGVVNLFTESGSEGAAHLVASPDVDVISFTGSTATGRAIMAAAAPTLKRLGLELG 229
Query: 276 AKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEAL 333
K ++ DA+ L +L A AGQ CMA S V+ V ++ E L R A+
Sbjct: 230 GKTPCIVFDDADLDAALPKLERALTIFAGQFCMAGSRVL-VQRSIADEVRDRLAARLAAV 288
Query: 334 KVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
KV G P +D+GP+I +R+ +++ + GA ++L G
Sbjct: 289 KVGPGLDPASDMGPLIDRANVDRVDRMVERAIAAGAEVVLRG 330
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 162 bits (411), Expect = 5e-45
Identities = 105/340 (30%), Positives = 164/340 (48%), Gaps = 19/340 (5%)
Query: 47 IDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQ---VLFRLQNIIK 103
+++ NP T EVV VP T + A+A A S S +TR Q +L + +++
Sbjct: 1 LEVRNPYTGEVVGTVPAGTEEALREALALAA------SYRSTLTRYQRSAILNKAAALLE 54
Query: 104 ANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET----LAGVAKDMDI 159
A ++ A IT E G L D +V R V+ + GE+ L K I
Sbjct: 55 ARREEFARLITLESGLCLKDTRYEVGRAADVLRFAAAEALRDDGESFSCDLTANGKARKI 114
Query: 160 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAG 219
+ R PLGV ITPFN P AIA N V+KPSE+ P + + L D+L +AG
Sbjct: 115 FTLREPLGVVLAITPFNHPLNQVAHKIAPAIAANNRIVLKPSEKTPLSAIYLADLLYEAG 174
Query: 220 CPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKN 278
PP +++V+ G + + + HPD+ ++F G GK I KR +G +
Sbjct: 175 LPPDMLSVVTGEPGEIGDELITHPDVDLVTFTGGVAVGKAIAATAG--YKRQLLELGGND 232
Query: 279 HGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVS 336
++M DA+ V ++ +GQRC A+ I V E+V E++ L +++ AL V
Sbjct: 233 PLIVMDDADLERAATLAVAGSYANSGQRCTAVKR-ILVHESVADEFVDLLVEKSAALVVG 291
Query: 337 AGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
P TD+G VI +A +I + ++ + +GA +LL +
Sbjct: 292 DPMDPATDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQ 331
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 162 bits (412), Expect = 9e-45
Identities = 105/357 (29%), Positives = 189/357 (52%), Gaps = 9/357 (2%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYE--TWS 84
I TKL+I+G+FV++ + + +P T EV+ R+ + +++ AV +A++A++ W
Sbjct: 18 IKFTKLFINGEFVDAASGKTFETRDPRTGEVIARIAEGDKEDVDLAVKAAREAFDHGPWP 77
Query: 85 KTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPT 143
+ S R +++ + ++I+ ++++LA T + GK A + D+ ++
Sbjct: 78 RMSGFERGRIMMKFADLIEEHIEELAALDTIDAGKLFALGKAVDIPAAAGLLRYYAGAAD 137
Query: 144 IMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
+ GETL +++ + ++ + P+GV I P+NFP+ + A+A G T V+KP+E+
Sbjct: 138 KIHGETLK-MSRQLQGYTLKEPIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQ 196
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + + + AG P GV+NV+ G A I H D+ +SF GS + G+ I +
Sbjct: 197 TPLSALFYAHLAKLAGVPDGVINVVTGFGPTAGAAIASHMDVDKVSFTGSTEVGRKIMQA 256
Query: 263 GAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
A N K+V +G K+ +I DA+ ++ + F G+ C+A S V +V E +
Sbjct: 257 AATSNLKQVSLELGGKSPLLIFDDADVDMAVDLALLGIFYNKGEICVASSRV-YVQEGIY 315
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
E++ +L ++A+ V P GP + Q E+ILS I+ G EGATLL G+
Sbjct: 316 DEFVKKLVEKAKDWVVGDPFDPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGK 372
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 161 bits (409), Expect = 9e-45
Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 28/321 (8%)
Query: 69 MESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDV 128
+E+A+ A A+ W KTS R +L +L ++++ +LA IT E GK +A+A +V
Sbjct: 1 IEAALDRAHAAFLAWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEARAEV 60
Query: 129 LRGLQVVEQCCSI--------PTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAM 180
E+C I + E + A + Y PLGV GI P+NFP
Sbjct: 61 -------EKCAWICRYYAENAEAFLADEPIETDAGKAYV-RYE-PLGVVLGIMPWNFP-- 109
Query: 181 IPLW-MFPVAIAC---GNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVN 236
W +F A GNT ++K + PG + + ++ +AG P GV + D V
Sbjct: 110 --FWQVFRFAAPNLMAGNTVLLKHASNVPGCALAIEELFREAGFPEGVFQNLLIDSDQVE 167
Query: 237 FICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLV 296
I P +R ++ GS++AG+ + KN K+ +G + +++ DA+ + V
Sbjct: 168 AIIADPRVRGVTLTGSERAGRAVAAEAGKNLKKSVLELGGSDPFIVLDDADLDKAVKTAV 227
Query: 297 GAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAK 354
AGQ C+A + V E V E+L + + ALKV TDLGP+ +
Sbjct: 228 KGRLQNAGQSCIA-AKRFIVHEDVYDEFLEKFVEAMAALKVGDPMDEDTDLGPLARKDLR 286
Query: 355 ERILSLIQSGVDEGATLLLDG 375
+ + ++ V GATLLL G
Sbjct: 287 DELHEQVEEAVAAGATLLLGG 307
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 160 bits (407), Expect = 2e-44
Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 7/337 (2%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
NPAT EV+ VP PAE+ +AVA A+ A W+ + R Q L R + + + +L
Sbjct: 1 RNPATGEVLGEVPVTDPAEVAAAVARARAAQRAWAALGVEGRAQRLLRWKRALADHADEL 60
Query: 110 AENITEEQGKTLADAEGDVLRGLQVVEQCCS-IPTIMQGETLAG--VAKDMDIHSYRVPL 166
AE + E GK ADA +VL L+ ++ P ++ + + + P
Sbjct: 61 AELLHAETGKPRADAGLEVLLALEAIDWAARNAPRVLAPRKVPTGLLMPNKKATVEYRPY 120
Query: 167 GVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVN 226
GV I+P+N+P + P+ A+A GN V+KPSE P +L + AG P GV+
Sbjct: 121 GVVGVISPWNYPLLTPMGDIIPALAAGNAVVLKPSEVTPLVGELLAEAWAAAGPPQGVLQ 180
Query: 227 VIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDA 286
V+ G + D + ++F GS G+ + A+ V +G K+ ++++DA
Sbjct: 181 VVTGDGATGAALIDAG-VDKVAFTGSVATGRKVMAAAAERLIPVVLELGGKDPMIVLADA 239
Query: 287 NRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTD 344
+ V A AGQ C+++ ++V E+V E++ L +A AL+ A ++ D
Sbjct: 240 DLERAAAAAVWGAMVNAGQTCISVE-RVYVHESVYDEFVARLVAKARALRPGADDIGDAD 298
Query: 345 LGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
+GP+ + + + + + V +GA L G G
Sbjct: 299 IGPMTTARQLDIVRRHVDDAVAKGAKALTGGARSNGG 335
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 159 bits (404), Expect = 1e-43
Identities = 114/371 (30%), Positives = 183/371 (49%), Gaps = 17/371 (4%)
Query: 17 MKTFR-QFIRHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVAS 75
++ + +F R L I G++V++K + A +EVV KA AE E+A+ +
Sbjct: 8 LRRVKEEFGRAYP---LVIGGEWVDTKERMVS-VSPFAPSEVVGTTAKADKAEAEAALEA 63
Query: 76 AKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVV 135
A A++TW R ++L + ++++ ++L +T E GK +A DV + +
Sbjct: 64 AWAAFKTWKDWPQEDRARLLLKAADLLRRRRRELIATLTYEVGKNWVEAIDDVAEAIDFI 123
Query: 136 E--QCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACG 193
++ + + + S+ V LG I+P+NFP I M +A G
Sbjct: 124 RYYARAALRLRYPAVEVVPYPGEDN-ESFYVGLGAGVVISPWNFPVAIFTGMIVAPVAVG 182
Query: 194 NTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGS 252
NT + KP+E + ++ +AG PPGVV + G + V ++ +H IR I+F GS
Sbjct: 183 NTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHERIRGINFTGS 242
Query: 253 DQAGKYIYERGAKNG------KRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQR 306
+ GK IYE A+ KR+ G KN ++ A+ + +V +AFG GQ+
Sbjct: 243 LETGKKIYEAAARLAPGQTWFKRLYVETGGKNAIIVDETADFELVVEGVVVSAFGFQGQK 302
Query: 307 CMALSTVIFVGEAVEWLPE-LKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGV 365
C A S +I A E + E L KRAE L V GTDLGPVI + + ++LS I+ G
Sbjct: 303 CSAASRLILTQGAYEPVLERLLKRAERLSVGPPEENGTDLGPVIDAEQEAKVLSYIEHGK 362
Query: 366 DEGATLLLDGR 376
+EG L+L G+
Sbjct: 363 NEG-QLVLGGK 372
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 157 bits (399), Expect = 5e-43
Identities = 105/359 (29%), Positives = 185/359 (51%), Gaps = 17/359 (4%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTS 87
+L+I+G++ + + + +P T + ++ + +++ AV++A+ +E WS +S
Sbjct: 20 NRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSS 79
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA-EGDVLRGLQVVEQCCSIPTIMQ 146
R+ VL +L ++++A+ ++LA T + GK + + D+ + + +
Sbjct: 80 PAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVY 139
Query: 147 GETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG 206
GE +A + R P+GV A I P+NFP ++ W A+A GN+ ++KPSE+ P
Sbjct: 140 GE-VATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPL 198
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIY-ERGA 264
+ + L + +AG P GV+NV+ G H+A + H DI AI+F GS + GK + + G
Sbjct: 199 SAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGD 258
Query: 265 KNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAA----FGAAGQRCMALSTVIFVGEAV 320
N KRV G K+ ++ +D L Q A F GQ C+A T + + E++
Sbjct: 259 SNMKRVWLEAGGKSANIVFADC---PDLQQAASATAAGIFYNQGQVCIA-GTRLLLEESI 314
Query: 321 --EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRN 377
E+L LK++A+ + P T +G +I + + S I+ G +G LLLDGRN
Sbjct: 315 ADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREGESKG-QLLLDGRN 372
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 154 bits (390), Expect = 2e-41
Identities = 116/372 (31%), Positives = 179/372 (48%), Gaps = 41/372 (11%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WS 84
++ T+L I+G+FV++ + +P T EV+ V + ++ AVA+A+KA++ W
Sbjct: 55 VSYTQLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWP 114
Query: 85 KTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIP-T 143
K + R ++L R ++++ + +LA T + GK + +P
Sbjct: 115 KMTAYERSRILLRFADLLEKHNDELAALETWDNGKPYEQSAK------------AELPMF 162
Query: 144 IMQGETLAGVAKDMDIHSYRV-------------PLGVTAGITPFNFPAMIPLWMFPVAI 190
AG A IH V P+GV I P+NFP ++ W A+
Sbjct: 163 ARLFRYYAGWAD--KIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPAL 220
Query: 191 ACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISF 249
ACGNT V+K +E+ P + + +L +AG PPGV+NV+ G A + H D+ ++F
Sbjct: 221 ACGNTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASHMDVDKLAF 280
Query: 250 VGSDQAGKYIYERGAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCM 308
GS GK + E AK N K V +G K+ ++ DA+ + A F GQ C
Sbjct: 281 TGSTDTGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCC 340
Query: 309 ALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVP---GTDLGPVISPQAKERILSLIQS 363
A S FV E V E++ K +A ALK G+ P G + GP I + E+IL I+S
Sbjct: 341 AGSRT-FVHERVYDEFVE--KAKARALKRVVGD-PFKKGVEQGPQIDSEQFEKILRYIKS 396
Query: 364 GVDEGATLLLDG 375
GV+ GATL G
Sbjct: 397 GVESGATLECGG 408
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 151 bits (385), Expect = 4e-41
Identities = 95/359 (26%), Positives = 166/359 (46%), Gaps = 27/359 (7%)
Query: 33 YIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQ 92
DG++ + +PA E + RV +ATP + ES + +A++A++ W R
Sbjct: 2 VYDGEWGGGGGV--VTSISPANGEPIARVRQATPEDYESTIKAAQEAFKEWRDVPAPKRG 59
Query: 93 QVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAG 152
+++ ++ + ++ + L + ++ E GK L + G+V + + + + + G T
Sbjct: 60 EIVRQIGDALRKKKEALGKLVSLEMGKILPEGLGEVQEMIDICDFAVGLSRQLYGLT--- 116
Query: 153 VAKDMDIHSYR---------VPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
I S R PLGV IT FNFP + W +A+ CGN V KPS
Sbjct: 117 ------IPSERPGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIALVCGNVVVWKPSPT 170
Query: 204 DP---GACMMLV-DMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYI 259
P A +V +L + G P + +++ G D + P + +SF GS G+ +
Sbjct: 171 TPLTAIAVTKIVARVLEKNGLPGAIASLVCGGADVGEALVKDPRVPLVSFTGSTAVGRQV 230
Query: 260 YERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEA 319
+ A R +G N ++M DA+ + ++ AA G AGQRC +I V E+
Sbjct: 231 GQAVAARFGRSLLELGGNNAIIVMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLI-VHES 289
Query: 320 V--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ E L LKK + +++ GT +GP+ + A + L+ I+ +G T+L G+
Sbjct: 290 IYDEVLERLKKAYKQVRIGDPLDDGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGK 348
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 149 bits (379), Expect = 3e-40
Identities = 105/376 (27%), Positives = 170/376 (45%), Gaps = 50/376 (13%)
Query: 32 LYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR 91
L+I+G ++ + + NP + EV+ + AT A++++AV +A+ A+ W++ S R
Sbjct: 3 LWINGDWIAGQGEA-FESRNPVSGEVLWQGNDATAAQVDAAVRAARAAFPAWARLSFEER 61
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLA 151
Q ++ R +++ N ++LAE I E GK L +A +V T M +
Sbjct: 62 QAIVERFAALLEENKEELAEVIARETGKPLWEAATEV--------------TAMINKI-- 105
Query: 152 GVAKDMDIHSYRV-------------------PLGVTAGITPFNFPAMIPLWMFPVAIAC 192
+ I +Y P GV A P+NFP +P A+
Sbjct: 106 ----AISIQAYHERTGEKRSEMADGAAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLA 161
Query: 193 GNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGS 252
GNT V KPSE P + V + QAG P GV+N++ G + + HPDI + F GS
Sbjct: 162 GNTVVFKPSELTPWVAELTVKLWQQAGLPAGVLNLVQGGRETGKALAAHPDIDGLLFTGS 221
Query: 253 DQAGKYIYERGAKN-GKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALS 311
G ++ + A K + MG N VI A+ ++ ++ +AF +AGQRC +
Sbjct: 222 ANTGYLLHRQFAGQPEKILALEMGGNNPLVIDEVADIDAAVHLIIQSAFISAGQRCTC-A 280
Query: 312 TVIFV-----GEAVEWLPELKKRAEALKVSAGNV-PGTDLGPVISPQAKERILSLIQSGV 365
+ V G+A L L A+ L V + P +G VIS QA + +++ +
Sbjct: 281 RRLLVPQGAQGDAF--LARLVAVAKRLTVGRWDAEPQPFMGAVISEQAAQGLVAAQAQLL 338
Query: 366 DEGATLLLDGRNLKVG 381
G LL+ L+ G
Sbjct: 339 ALGGKSLLEMTQLQAG 354
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 146 bits (370), Expect = 3e-39
Identities = 99/342 (28%), Positives = 162/342 (47%), Gaps = 19/342 (5%)
Query: 31 KLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
KL I+G+ V + + ++NPAT EV+ + +A+ ++++AV +A A+ W +T+
Sbjct: 3 KLLINGELVSGEG-EKQPVYNPATGEVILEIAEASAEQVDAAVRAADAAFAEWGQTTPKA 61
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTL-------ADAEGDVLRGLQVVEQCCSIPT 143
R + L +L ++I+ N + AE + GK L A DV R +C S
Sbjct: 62 RAECLLKLADVIEENAQVFAELESRNCGKPLHSVFNDEIPAIVDVFRFFAGAARCLS--G 119
Query: 144 IMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
+ GE L G + R PLGV A I P+N+P M+ W A+A GN V+KPSE
Sbjct: 120 LAAGEYLEGHTSMIR----RDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEI 175
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + L ++ P GVVN++ G + + H +R +S GS G++I
Sbjct: 176 TPLTALKLAELAKDI-FPAGVVNILFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHILSH 234
Query: 263 GAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-- 320
A + KR +G K ++ DA+ + + F AGQ C A + I+ +
Sbjct: 235 TAPSIKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQDCTA-ACRIYAQRGIYD 293
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQ 362
+ +L LK A + T+LGP+ S ER++ ++
Sbjct: 294 TLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVMKAVE 335
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 145 bits (368), Expect = 2e-38
Identities = 98/351 (27%), Positives = 162/351 (46%), Gaps = 28/351 (7%)
Query: 34 IDGKFVESKATDWIDLHNPATNEVVT-RVPKATPAEMESAVASAKKAYETWSKTSIITRQ 92
I+G+ E+ + + +PA +E V A ++++A+A A A+ WS T + R
Sbjct: 37 INGEETET--GEGAPVIDPADHERTIGEVSLADAEDVDAALAIAAAAFAGWSATPVEERA 94
Query: 93 QVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDV------LR--GLQVVEQCCSIPTI 144
++L + ++++AN +L E GKTLADA+ +V R Q E
Sbjct: 95 EILEKAADLLEANRGELIALAAAEAGKTLADADAEVREAIDFCRYYAAQAREL------- 147
Query: 145 MQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERD 204
L G +++ GV I+P+NFP I A+A GNT + KP+E+
Sbjct: 148 FSDPELPGPTGELNGLELH-GRGVFVCISPWNFPLAIFTGQIAAALAAGNTVIAKPAEQT 206
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYE-R 262
P V++L +AG P V+ ++ G + + + HP I + F GS + K I
Sbjct: 207 PLIAARAVELLHEAGVPRDVLQLVPGDGEEIGEALVAHPRIDGVIFTGSTETAKLINRAL 266
Query: 263 GAKNGKRVQSN--MGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV 320
++G + G KN ++ S A + +V +AFG+AGQRC AL + E
Sbjct: 267 AERDGPILPLIAETGGKNAMIVDSTALPEQAVKDVVQSAFGSAGQRCSALRLLYLQEEIA 326
Query: 321 E-WLPELKKRAEALKVSAGNV--PGTDLGPVISPQAKERILSLIQSGVDEG 368
E ++ LK +LKV G+ TD+GP+I A + + + + E
Sbjct: 327 ERFIEMLKGAMASLKV--GDPWDLSTDVGPLIDKPAGKLLRAHTELMRGEA 375
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 143 bits (362), Expect = 7e-38
Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 33/347 (9%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
++PAT + + VP TP +++ A+A+A+ A W+KTS R++VL L I N +++
Sbjct: 1 YDPATGQHLGSVPADTPEDVDEAIAAARAAQREWAKTSFAERRKVLRSLLKYILENQEEI 60
Query: 110 AENITEEQGKTLADAE-GDVLRGLQVVEQCCSIPTIMQGE-TLAGVAKD----MDIHSYR 163
+ GKT+ DA G++L + + T+ GE L ++ M R
Sbjct: 61 CRVACRDTGKTMVDASLGEILVTCEKIRW-----TLKHGEKALRPESRPGGLLMFYKRAR 115
Query: 164 V---PLGVTAGITPFNFP------AMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDM 214
V PLGV I +N+P +I A+ GN V+K SE+ + + +
Sbjct: 116 VEYEPLGVVGAIVSWNYPFHNLLGPIIA------ALFAGNAIVVKVSEQVAWSSGFFLSI 169
Query: 215 LTQA----GCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV 270
+ + G P +V ++ + + HP I I+F+GS GK + A++ V
Sbjct: 170 IRECLAACGHDPDLVQLVTCLPETAEALTSHPVIDHITFIGSPPVGKKVMAAAAESLTPV 229
Query: 271 QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKK 328
+G K+ +++ DA+ + ++ F ++GQ C+ + VI V E + + L L
Sbjct: 230 VLELGGKDPAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVI-VHEKIYDKLLEILTD 288
Query: 329 RAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
R +AL+ D+G +ISP +R+ L+ V++GA LL G
Sbjct: 289 RVQALRQGPPLDGDVDVGAMISPARFDRLEELVADAVEKGARLLAGG 335
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 142 bits (360), Expect = 2e-37
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 16/359 (4%)
Query: 32 LYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR 91
L+IDGK+ + + NPAT EV+ + A+ A++E+AVA+A+ A+ W++ S+ R
Sbjct: 1 LFIDGKWRAGQGESFSST-NPATQEVLWQGAAASAAQVEAAVAAARAAFPAWARLSLEER 59
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQ--GET 149
V+ R +++ + LA I E GK L + +V + + SI + GE+
Sbjct: 60 IAVVQRFAALLEERKEALARVIARETGKPLWETRTEV--ASMIGKVAISIKAYHERTGES 117
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACM 209
+ + +R P GV A P+NFP +P A+ GNT V KPSE P
Sbjct: 118 ENPMPDGRAVLRHR-PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAE 176
Query: 210 MLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYER-GAKNGK 268
V + +AG P GV+N++ GA + + HPDI + F GS G ++ + + K
Sbjct: 177 ETVKLWEKAGLPAGVLNLVQGARETGVALAAHPDIDGLLFTGSSNTGHLLHRQFAGRPEK 236
Query: 269 RVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFV-----GEAVEWL 323
+ MG N ++ A+ ++ ++ +AF +AGQRC + + V G+A L
Sbjct: 237 ILALEMGGNNPLIVDEVADIDAAVHLIIQSAFISAGQRC-TCARRLLVPDGAQGDAF--L 293
Query: 324 PELKKRAEALKVSAGNV-PGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
L + AE L V A + P +G VIS QA +R+L+ + G LL R L G
Sbjct: 294 ARLVEVAERLTVGAWDAEPQPFMGAVISLQAAQRLLAAQAKLLALGGKSLLAMRQLDPG 352
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 142 bits (359), Expect = 2e-37
Identities = 108/368 (29%), Positives = 175/368 (47%), Gaps = 36/368 (9%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTS 87
++L IDGK V A + NPAT EV+ AT A+M++A+A+A++A++ WS
Sbjct: 1 SRLLIDGKLVAGSAGTF-PTVNPATEEVLGVAADATAADMDAAIAAARRAFDETDWS-RD 58
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRG-LQVVEQCCSIPTIMQ 146
R + L +L++ ++A++++L E E G G L G + + +
Sbjct: 59 TALRVRCLRQLRDALRAHVEELRELTIAEVGAPRMLTAGAQLEGPVDDLGFAADLAESYA 118
Query: 147 GETLAGVAKDMDIHSYRV----PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSE 202
T GVA M I + R +GV ITP+NFP I L A+A GNT V+KP+
Sbjct: 119 WTTDLGVASPMGIPTRRTLRREAVGVVGAITPWNFPHQINLAKLGPALAAGNTVVLKPAP 178
Query: 203 RDPGACMMLVDMLTQ-AGCPPGVVNVIHGAHDAVN-FICDHPDIRAISFVGSDQAGKYIY 260
P +L +++ + PPGVVN++ + + + P + +SF GS G+ +
Sbjct: 179 DTPWCAAVLGELIAEHTDFPPGVVNIVTSSDHRLGALLAKDPRVDMVSFTGSTATGRAVM 238
Query: 261 ERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGA---AGQRCMALSTVIFVG 317
A K+V +G K+ +++ DA+ + + AAF AGQ C A++T + V
Sbjct: 239 ADAAATLKKVFLELGGKSAFIVLDDADLAAACSM---AAFTVCMHAGQGC-AITTRLVVP 294
Query: 318 EAVEWLPELKKRAEALKVSAGNV----------PGTDLGPVISPQAKERILSLIQSGVDE 367
A + EA+ +A + PGT GPVIS + ++R+ S + V E
Sbjct: 295 RA--------RYDEAVAAAAATMGSIKPGDPADPGTVCGPVISARQRDRVQSYLDLAVAE 346
Query: 368 GATLLLDG 375
G G
Sbjct: 347 GGRFACGG 354
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 140 bits (354), Expect = 6e-37
Identities = 93/344 (27%), Positives = 154/344 (44%), Gaps = 32/344 (9%)
Query: 50 HNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
P T E + +P++TPA++E+A A A+ A W+ R V R +++ +L
Sbjct: 1 EAPFTGEPLGELPQSTPADVEAAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDEL 60
Query: 110 AENITEEQGKTLADAEGDVL--------------RGLQVVEQCCSIPTIMQGETLAGVAK 155
+ I E GK A +VL R L+ + +IP + +
Sbjct: 61 LDLIQLETGKARRHAFEEVLDVAIVARYYARRAERLLKPRRRRGAIPVLTRTTV------ 114
Query: 156 DMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDML 215
R P GV I+P+N+P + + A+ GN V+KP + + V++L
Sbjct: 115 ------NRRPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTALTALWAVELL 168
Query: 216 TQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNM 274
+AG P + V+ G V I D+ D + F GS G+ + ER + +
Sbjct: 169 IEAGLPRDLWQVVTGPGSEVGGAIVDNADY--VMFTGSTATGRVVAERAGRRLIGCSLEL 226
Query: 275 GAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEA 332
G KN +++ DA+ V A F AGQ C+++ I+V E+V E++ R A
Sbjct: 227 GGKNPMIVLEDADLDKAAAGAVRACFSNAGQLCVSIER-IYVHESVYDEFVRRFVARTRA 285
Query: 333 LKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
L++ A G D+G +IS +R+ + + V +GAT+L GR
Sbjct: 286 LRLGAALDYGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGR 329
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 136 bits (343), Expect = 3e-35
Identities = 104/364 (28%), Positives = 173/364 (47%), Gaps = 34/364 (9%)
Query: 33 YIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQ 92
+I G++V ++ D P T +V VP++T ++E A+ +A A E W KTS+ R
Sbjct: 4 FIGGEWVAPVKGEYFDNITPVTGKVFCEVPRSTAEDIELALDAAHAAKEAWGKTSVAERA 63
Query: 93 QVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-------DVLRGLQVV--EQCCSIPT 143
+L ++ + ++AN++ LA T + GK + + D R Q SI
Sbjct: 64 NILNKIADRMEANLEMLAVAETWDNGKPVRETLAADIPLAIDHFRYFAGCIRAQEGSISE 123
Query: 144 IMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
I T+A H + PLGV I P+NFP ++ W A+A GN V+KP+E+
Sbjct: 124 I-DENTVA-------YHFHE-PLGVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQ 174
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGAH-DAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + ++L++++ PPGVVNV++G +A + I ++F G G+ I +
Sbjct: 175 TPASILVLMELIGDL-LPPGVVNVVNGFGLEAGKPLASSKRIAKVAFTGETTTGRLIMQY 233
Query: 263 GAKNGKRVQSNMGAKNHGV----IMS--DANRSNTLNQLVGAAFGAAGQRCMALSTVIFV 316
++N V +G K+ + +M DA L V A G+ C S + +
Sbjct: 234 ASENIIPVTLELGGKSPNIFFADVMDADDAFFDKALEGFVMFALN-QGEVCTCPSRAL-I 291
Query: 317 GEAV--EWLPELKKRAEALKVSAGNV--PGTDLGPVISPQAKERILSLIQSGVDEGATLL 372
E++ ++ +R +A+K GN T +G S + E+ILS I G +EGA +L
Sbjct: 292 QESIYDRFMERALERVKAIK--QGNPLDTETMIGAQASLEQLEKILSYIDIGKEEGAEVL 349
Query: 373 LDGR 376
G
Sbjct: 350 TGGE 353
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 134 bits (340), Expect = 3e-35
Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 13/290 (4%)
Query: 95 LFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVA 154
L ++ I+ +++ I EE GK AE +V ++ +GE +
Sbjct: 1 LRKIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDR 60
Query: 155 KDMDIHSYRVPLGVTAGITPFNFPA-MIPLWMFPVAIACGNTHVIKPSERDPGACMMLVD 213
+I ++ LGVT GI P+NFP +I M P A+ GNT VIKPSE P +
Sbjct: 61 PGENILLFKRALGVTTGILPWNFPFFLIARKMAP-ALLTGNTIVIKPSEFTPNNAIAFAK 119
Query: 214 MLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQS 272
++ + G P GV N++ G + V + +P + +S GS AG+ I AKN +V
Sbjct: 120 IVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMAAAAKNITKVCL 179
Query: 273 NMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRA 330
+G K ++M DA+ + +V + +GQ C V +V + + +++ L +
Sbjct: 180 ELGGKAPAIVMDDADLDLAVKAIVDSRVINSGQVCNCAERV-YVQKGIYDQFVNRLGEAM 238
Query: 331 EALKVSAGNVPGT----DLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+A V GN P +GP+I+ A ER+ + V+EGA + L G+
Sbjct: 239 QA--VQFGN-PAERNDIAMGPLINAAALERVEQKVARAVEEGARVALGGK 285
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 134 bits (339), Expect = 1e-34
Identities = 96/353 (27%), Positives = 169/353 (47%), Gaps = 19/353 (5%)
Query: 31 KLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
K Y DG++ S + + + NP+T + +V T E+ A+ SAK A + W+KT +
Sbjct: 17 KYYADGEWRTSSSGKSVAITNPSTRKTQYKVQACTQEEVNKAMESAKAAQKAWAKTPLWK 76
Query: 91 RQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCS--IPTIMQGE 148
R ++L + I+K + +AE + +E K DA +V+R ++ + + +G+
Sbjct: 77 RAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEEGVRILGEGK 136
Query: 149 TLA-----GVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
L G ++ + ++PLGV I PFN+P + + A+ GN V+KP +
Sbjct: 137 FLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNAVVLKPPTQ 196
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
A + +V AG P G+++ + G + +F+ HP + ISF G D G I
Sbjct: 197 GAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGD-TGIAI--- 252
Query: 263 GAKNGKRV--QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV 320
+K V Q +G K+ +++ DA+ ++ F +GQRC A+ V+ +
Sbjct: 253 -SKKAGMVPLQMELGGKDACIVLEDADLDLAAANIIKGGFSYSGQRCTAVKVVLVMESVA 311
Query: 321 EWLPELKKRAEALKVSAGNVP--GTDLGPVISPQAKERILSLIQSGVDEGATL 371
+ L E K A+ K++ G P D+ PV+S + I L+ ++GAT
Sbjct: 312 DALVE-KVNAKVAKLTVG-PPEDDCDITPVVSESSANFIEGLVMDAKEKGATF 362
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 132 bits (334), Expect = 5e-34
Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 22/364 (6%)
Query: 24 IRHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETW 83
IR A L I G+ V I++ P VV VPKA+ ++ A A A AY
Sbjct: 1 IRAEA---LRIAGEKVSRDRV--IEVRYPYNGTVVGTVPKASVDDVRRAFAIAA-AYR-- 52
Query: 84 SKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPT 143
+ R +L R ++ A +++++ IT E G + D+ +V R V+ +
Sbjct: 53 PTLTRYERSAILDRAAALLAARKEEISDLITLESGLSKKDSLYEVGRVADVLTFAAAEAL 112
Query: 144 IMQGET----LAGVAKDMDIHSYRVPL-GVTAGITPFNFPAMIPLWMFPVAIACGNTHVI 198
G+ L K + + R PL GV + ITPFN P AIA N V+
Sbjct: 113 RDDGQIFSCDLTPHGKARKVFTQREPLLGVISAITPFNHPMNQVAHKIAPAIATNNRMVV 172
Query: 199 KPSERDPGACMMLVDMLTQAGCPPGVVNVIHG--AHDAVNFICDHPDIRAISFVGSDQAG 256
KPSE+ P + + L D+L +AG PP ++ V+ G A I +P + ++F G G
Sbjct: 173 KPSEKTPLSALYLADILYEAGLPPQMLQVVTGDPREIADELIT-NPHVDLVTFTGGVAIG 231
Query: 257 KYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFV 316
KYI R +R +G + ++M DA+ + V ++ +GQRC A+ + V
Sbjct: 232 KYIAARAGY--RRQVLELGGNDPLIVMEDADLDRAADLAVKGSYKNSGQRCTAVKR-MLV 288
Query: 317 GEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLL- 373
E+V + L ++ A + P D+G VI A + + + +GA LLL
Sbjct: 289 QESVADRFTELLVEKTRAWRYGDPMDPSVDMGTVIDEAAAILFEARVNEAIAQGARLLLG 348
Query: 374 DGRN 377
+ R+
Sbjct: 349 NVRD 352
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 130 bits (330), Expect = 3e-33
Identities = 94/353 (26%), Positives = 159/353 (45%), Gaps = 28/353 (7%)
Query: 39 VESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRL 98
V+ A ++ P T E + VP +T A++E+A A A+ A W+ T + R VL R
Sbjct: 26 VDGAAGPTREVTAPFTGEPLATVPVSTAADVEAAFARARAAQRAWAATPVRERAAVLLRF 85
Query: 99 QNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCS-----IPTIMQGETLAGV 153
+++ N ++L + + E GK A +VL V P ++ AG
Sbjct: 86 HDLVLENREELLDLVQLETGKARRHAFEEVLD----VALTARYYARRAPKLLAPRRRAGA 141
Query: 154 AKDM-DIHSYRVPLGVTAGITPFNFPA------MIPLWMFPVAIACGNTHVIKPSERDPG 206
+ R P GV I+P+N+P IP A+ GN V+KP + P
Sbjct: 142 LPVLTKTTELRQPKGVVGVISPWNYPLTLAVSDAIP------ALLAGNAVVLKPDSQTPL 195
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAK 265
+ V++L +AG P + V+ G V + D+ D + F GS G+ + E+ +
Sbjct: 196 TALAAVELLYEAGLPRDLWQVVTGPGPVVGTALVDNADY--LMFTGSTATGRVLAEQAGR 253
Query: 266 NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWL 323
+G KN +++ DA+ V A F AGQ C+++ I+V E++ E++
Sbjct: 254 RLIGFSLELGGKNPMIVLDDADLDKAAAGAVRACFSNAGQLCISIER-IYVHESIYDEFV 312
Query: 324 PELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
A+++ AG D+G +IS E + + + V +GAT+L G+
Sbjct: 313 RAFVAAVRAMRLGAGYDYSADMGSLISEAQLETVSAHVDDAVAKGATVLAGGK 365
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 129 bits (325), Expect = 7e-33
Identities = 91/346 (26%), Positives = 160/346 (46%), Gaps = 17/346 (4%)
Query: 41 SKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQN 100
+ AT I + NPAT E ++ +P A ++E+A+ A + W +T+I R Q L +
Sbjct: 4 TPATHAISV-NPATGEQLSVLPWAGADDIENALQLAAAGFRDWRETNIDYRAQKLRDIGK 62
Query: 101 IIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSI-PTIMQGE-TLAGVAKDMD 158
++A +++A+ IT E GK + A +V + + + P +++ E TL V
Sbjct: 63 ALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAEHGPAMLKAEPTL--VENQQA 120
Query: 159 IHSYRVPLGVTAGITPFNFPAMIPLWMF-----PVAIACGNTHVIKPSERDPGACMMLVD 213
+ YR PLG I P+NF PLW P+ +A GN +++K + G ++
Sbjct: 121 VIEYR-PLGTILAIMPWNF----PLWQVMRGAVPILLA-GNGYLLKHAPNVMGCAQLIAQ 174
Query: 214 MLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSN 273
+ AG P GV ++ +D V+ + + I A++ GS +AG I + K+
Sbjct: 175 VFKDAGIPQGVYGWLNADNDGVSQMINDSRIAAVTVTGSVRAGAAIGAQAGAALKKCVLE 234
Query: 274 MGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIF-VGEAVEWLPELKKRAEA 332
+G + ++++DA+ + V + GQ C A I G A + A A
Sbjct: 235 LGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAA 294
Query: 333 LKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNL 378
LK+ LGP+ ++ + +++ + EGA LLL G +
Sbjct: 295 LKMGDPRDEENALGPMARFDLRDELHHQVEATLAEGARLLLGGEKI 340
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 127 bits (320), Expect = 2e-31
Identities = 100/319 (31%), Positives = 157/319 (49%), Gaps = 20/319 (6%)
Query: 51 NPAT-NEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
NPA +++V V +AT A++E A+ +A A WS T R +L R ++++A M QL
Sbjct: 133 NPADPDDIVGTVTEATEADVEQALEAAVAAAPIWSATPPAERAAILERAADLMEAQMPQL 192
Query: 110 AENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVT 169
+ E GKTL++A +V + V+ AG A+D + PLG
Sbjct: 193 MGLLVREAGKTLSNAIAEVR---EAVDFL---------RYYAGQARDTFGNLTHRPLGPV 240
Query: 170 AGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIH 229
I+P+NFP I A+A GN+ + KP+E+ P V +L +AG PPGV+ ++
Sbjct: 241 VCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVRLLHEAGVPPGVLQLLP 300
Query: 230 GAHDAVN-FICDHPDIRAISFVGSDQAGKYIYERGAK-NGKRVQ--SNMGAKNHGVIMSD 285
G + V + + + F GS + + I + AK G+ + + G +N ++ S
Sbjct: 301 GRGETVGAALTADARVAGVMFTGSTEVARLIQRQLAKRQGRPIPLIAETGGQNAMIVDSS 360
Query: 286 ANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVE--WLPELKKRAEALKVSAGNVPGT 343
A + ++ +AF +AGQRC AL V+ + E V L LK L+V + T
Sbjct: 361 ALAEQVVADVLASAFDSAGQRCSALR-VLCLQEDVADRILTMLKGAMAELRVGNPDRLTT 419
Query: 344 DLGPVISPQAKERILSLIQ 362
D+GPVI +AK I IQ
Sbjct: 420 DVGPVIDAEAKANIEKHIQ 438
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 125 bits (314), Expect = 3e-31
Identities = 91/319 (28%), Positives = 157/319 (49%), Gaps = 20/319 (6%)
Query: 51 NPAT-NEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQL 109
NPA ++V +V A A +++A+ SA++A+ TW+ T R L RL ++++ +M +L
Sbjct: 57 NPADRRDIVGQVFHANLAHVQAAIDSAQQAFPTWNATPAKERAAKLDRLADLLELHMPEL 116
Query: 110 AENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVT 169
E GKT+ +A +V + V+ C A +D+ GV
Sbjct: 117 MALCVREAGKTIHNAIAEVR---EAVDFC---------RYYAKQVRDVLGEFSVESRGVF 164
Query: 170 AGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIH 229
I+P+NFP I A+A GNT + KP+E+ V+++ +AG P G + ++
Sbjct: 165 VCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQLLP 224
Query: 230 GAHDAVN-FICDHPDIRAISFVGSDQAGKYIYERGAKNGK---RVQSNMGAKNHGVIMSD 285
G V + P I ++F GS + + I + A+ + + G +N ++ S
Sbjct: 225 GRGADVGAALTSDPRIAGVAFTGSTEVAQLINQTLAQREDAPVPLIAETGGQNAMIVDST 284
Query: 286 ANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGT 343
A + ++ +AF +AGQRC AL V+ V E V L ++ + LKV ++ T
Sbjct: 285 ALPEQVVRDVLRSAFDSAGQRCSALR-VLCVQEDVADRVLTMIQGAMQELKVGVPHLLTT 343
Query: 344 DLGPVISPQAKERILSLIQ 362
D+GPVI +AK+ +L+ I+
Sbjct: 344 DVGPVIDAEAKQNLLAHIE 362
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 119 bits (302), Expect = 5e-29
Identities = 103/337 (30%), Positives = 162/337 (48%), Gaps = 31/337 (9%)
Query: 45 DWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIK 103
+ + +PA VV V A ++E A+A+A+ A+ WS+T + R +L R ++++
Sbjct: 562 EARPVVSPADRRRVVGEVAFADAEQVEQALAAARAAFPAWSRTPVEERAAILERAADLLE 621
Query: 104 ANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQC---CSIPTIMQGETLAGVAKDM--- 157
AN +L E GKTL DA +V R + V+ C Q L G + +
Sbjct: 622 ANRAELIALCVREAGKTLQDAIAEV-R--EAVDFCRYYA-----AQARRLFGAPEKLPGP 673
Query: 158 ---DIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDM 214
GV I+P+NFP I L A+A GNT + KP+E+ P V +
Sbjct: 674 TGESNELRLHGRGVFVCISPWNFPLAIFLGQVAAALAAGNTVIAKPAEQTPLIAAEAVKL 733
Query: 215 LTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERG--AKNGKRVQ 271
L +AG P V+ ++ G V + P I ++F GS + + I R A++G V
Sbjct: 734 LHEAGIPKDVLQLLPGDGATVGAALTADPRIAGVAFTGSTETARII-NRTLAARDGPIVP 792
Query: 272 --SNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELK 327
+ G +N ++ S A ++ +V +AF +AGQRC AL V+FV E + + LK
Sbjct: 793 LIAETGGQNAMIVDSTALPEQVVDDVVTSAFRSAGQRCSALR-VLFVQEDIADRVIEMLK 851
Query: 328 KRAEALKVSAGN--VPGTDLGPVISPQAKERILSLIQ 362
LKV G+ + TD+GPVI +AK + + I+
Sbjct: 852 GAMAELKV--GDPRLLSTDVGPVIDAEAKANLDAHIE 886
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 112 bits (282), Expect = 5e-27
Identities = 95/350 (27%), Positives = 153/350 (43%), Gaps = 31/350 (8%)
Query: 47 IDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSK-TSIITRQQVLFRLQNIIKAN 105
+++ NP + + VP A ++ A+ +A + + R +L RL ++++
Sbjct: 1 LEVVNPFDLKPIGEVPTVDWAAIDKALDTAHALFLDRNNWLPAHERIAILERLADLMEER 60
Query: 106 MKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDI------ 159
+LA I E GK L DA+ +V R + VE + L G M +
Sbjct: 61 ADELALLIAREGGKPLVDAKVEVTRAIDGVELA-----ADELGQLGGREIPMGLTPASAG 115
Query: 160 ---HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLT 216
+ R P+GV I+ FN P + + AIA G ++KP+ P +C+ VD+L
Sbjct: 116 RIAFTTREPIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLH 175
Query: 217 QAGCPPGVVN-VIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMG 275
+AG P G V A + D P + SF+GS + G + + A G R
Sbjct: 176 EAGLPEGWCQAVPCENAVAEKLVTD-PRVAFFSFIGSARVGWMLRSKLAP-GTRC----- 228
Query: 276 AKNHG-----VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKK 328
A HG ++ A+ + LV F AGQ C+++ V FV + ++ L
Sbjct: 229 ALEHGGAAPVIVDRSADLDAMIPPLVKGGFYHAGQVCVSVQRV-FVPAEIADDFAQRLAA 287
Query: 329 RAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNL 378
AE L V P T++GP+I P+ +R+ + V GA LL G+ L
Sbjct: 288 AAEKLVVGDPTDPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKRL 337
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 111 bits (280), Expect = 8e-27
Identities = 89/336 (26%), Positives = 145/336 (43%), Gaps = 17/336 (5%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT E V T E+++A+A A + + T+ R + ++++A Q+A
Sbjct: 7 NPATGETVKTFTALTDDEVDAAIARAHARFRDYRTTTFAQRARWANAAADLLEAEADQVA 66
Query: 111 ENITEEQGKTLADAEGDVL---RGLQVVEQCCSIPTIMQGET--LAGVAKDMDIHSYRVP 165
+T E GKTLA A+ + L +G + + ++ E A V Y+ P
Sbjct: 67 ALMTLEMGKTLASAKAEALKCAKGFRYYAE--HAEALLADEPADAAAVGASRAYVRYQ-P 123
Query: 166 LGVTAGITPFNFPAMIPLWM---FPV-AIACGNTHVIKPSERDPGACMMLVDMLTQAGCP 221
LGV + P+NFP LW F A+ GN ++K + P + L D+ +AG P
Sbjct: 124 LGVVLAVMPWNFP----LWQVVRFAAPALMAGNVGLLKHASNVPQTALYLADLFRRAGFP 179
Query: 222 PGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGV 281
G + AV I P + A + GS+ AG+ + K+ +G + +
Sbjct: 180 DGCFQTLLVGSGAVEAILRDPRVAAATLTGSEPAGRAVAAIAGDEIKKTVLELGGSDPFI 239
Query: 282 IMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPEL-KKRAEALKVSAGNV 340
+M A+ V A GQ C+A I + + E R AL+V
Sbjct: 240 VMPSADLDRAAETAVTARVQNNGQSCIAAKRFIVHADVYDAFAEKFVARMAALRVGDPTD 299
Query: 341 PGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
P TD+GP+ + Q ++ + + V GAT+L G+
Sbjct: 300 PDTDVGPLATEQGRDEVEKQVDDAVAAGATILCGGK 335
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 111 bits (280), Expect = 4e-26
Identities = 99/338 (29%), Positives = 155/338 (45%), Gaps = 47/338 (13%)
Query: 48 DLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANM 106
+ NPA ++V V +ATPAE+E A+ SA A W T R +L R ++++A M
Sbjct: 662 PVINPADPRDIVGYVREATPAEVEQALESAVNAAPIWFATPPAERAAILERAADLMEAQM 721
Query: 107 KQLAENITEEQGKTLADAEGDV------LRGLQVVEQCCSIPTIMQGETLAG-VAKDMDI 159
+ L + E GKT ++A +V LR AG V D D
Sbjct: 722 QTLMGLLVREAGKTFSNAIAEVREAVDFLR------------------YYAGQVRDDFDN 763
Query: 160 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAG 219
++R PLG I+P+NFP I A+A GN+ + KP+E+ P V +L +AG
Sbjct: 764 DTHR-PLGPVVCISPWNFPLAIFTGQVAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAG 822
Query: 220 CPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKN-GKRVQSN---- 273
P GVV ++ G + V + +R + F GS + + + +N R+
Sbjct: 823 VPAGVVQLLPGRGETVGAALVADARVRGVMFTGSTEVARLL----QRNLAGRLDPQGRPI 878
Query: 274 -----MGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPELKK 328
G +N ++ S A + ++ +AF +AGQRC AL + + + ++ +
Sbjct: 879 PLIAETGGQNAMIVDSSALTEQVVADVLASAFDSAGQRCSALRVLCLQDDVADRTLKMLR 938
Query: 329 RAEALKVSAGNVPG---TDLGPVISPQAKERILSLIQS 363
A A + GN P TD+GPVI +AK I IQ+
Sbjct: 939 GAMA-ECRMGN-PDRLSTDIGPVIDAEAKANIERHIQA 974
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 107 bits (269), Expect = 1e-24
Identities = 99/335 (29%), Positives = 154/335 (45%), Gaps = 48/335 (14%)
Query: 49 LHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMK 107
+ NPA ++VV V +A+ ++E A+A+A+ A+ WS T R +L R ++++A+M
Sbjct: 571 VLNPADHDDVVGTVTEASAEDVERALAAAQAAFPEWSATPAAERAAILERAADLMEAHMP 630
Query: 108 QLAENITEEQGKTLADAEGDV------LRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHS 161
+L E GKTLA+A +V LR A A+ +
Sbjct: 631 ELFALAVREAGKTLANAIAEVREAVDFLR------------------YYAAQARRLLNGP 672
Query: 162 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCP 221
PLG I+P+NFP I A+ GNT + KP+E+ P V +L +AG P
Sbjct: 673 GHKPLGPVVCISPWNFPLAIFTGQIAAALVAGNTVLAKPAEQTPLIAARAVRLLHEAGVP 732
Query: 222 PGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNGKR---VQSNMGAK 277
+ ++ G V + P I + F GS + + I AK + + G +
Sbjct: 733 KDALQLLPGDGRTVGAALVADPRIAGVMFTGSTEVARLIQRTLAKRSGPPVPLIAETGGQ 792
Query: 278 NHGVIMSDANRSNTL-NQLVGA----AFGAAGQRCMALSTVIFVGE--AVEWLPELKKRA 330
N ++ S A L Q+V AF +AGQRC AL V+ + E A L LK
Sbjct: 793 NAMIVDSSA-----LPEQVVADVIASAFDSAGQRCSALR-VLCLQEDVADRVLTMLKGAM 846
Query: 331 EALKVSAGNVP---GTDLGPVISPQAKERILSLIQ 362
+ L++ G+ P TD+GPVI +A+ I + I+
Sbjct: 847 DELRI--GD-PWRLSTDVGPVIDAEAQANIEAHIE 878
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 105 bits (265), Expect = 1e-24
Identities = 93/374 (24%), Positives = 159/374 (42%), Gaps = 50/374 (13%)
Query: 32 LYIDGKFVESKATDWIDLHNPAT-NEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
L I GK V + T P V+ A A +E A+ +A +A + W++
Sbjct: 35 LVIGGKEVRTGNT--GKQVMPHDHAHVLATYHYADAALVEKAIEAALEARKEWARMPFED 92
Query: 91 RQQVLFRLQNII--KANMKQLAENITEEQGKTLADAEGDV-------LR-GLQVVEQCCS 140
R + + +++ K + A + QGK + AE D LR ++ E+
Sbjct: 93 RAAIFLKAADLLSGKYRYELNAATMLG-QGKNVWQAEIDAACELIDFLRFNVKYAEE--- 148
Query: 141 IPTIMQGETLAGVAKDMDIHSYRVPL-GVTAGITPFNFPAM------IPLWMFPVAIACG 193
+ + L+ A + YR PL G ++PFNF A+ P M G
Sbjct: 149 ---LYAQQPLSSPAGVWNRLEYR-PLEGFVYAVSPFNFTAIGGNLAGAPALM-------G 197
Query: 194 NTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGS 252
N + KPS+ + ++ +L +AG PPGV+N + G V + + P + + F GS
Sbjct: 198 NVVLWKPSDTAVLSNYLVYKILEEAGLPPGVINFVPGDGPVVGDTVLASPHLAGLHFTGS 257
Query: 253 DQAGKYIYERGA------KNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQR 306
K ++++ + R+ G KN ++ A+ + + V AF GQ+
Sbjct: 258 TPTFKSLWKQIGENLDRYRTYPRIVGETGGKNFHLVHPSADVDSLVTATVRGAFEYQGQK 317
Query: 307 CMALSTVIFVGEAVEWLPELKKR--AEALKVSAGNVP--GTDLGPVISPQAKERILSLI- 361
C A S +V E++ W PE+K+R E ++ G+ +G VI +A +RI I
Sbjct: 318 CSAASRA-YVPESL-W-PEVKERLLEELKEIKMGDPDDFSNFMGAVIDEKAFDRIKGYID 374
Query: 362 QSGVDEGATLLLDG 375
+ D A ++ G
Sbjct: 375 HAKSDPEAEIIAGG 388
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 99.6 bits (249), Expect = 1e-22
Identities = 73/334 (21%), Positives = 134/334 (40%), Gaps = 39/334 (11%)
Query: 65 TPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGK----- 119
E++S + + + + + R L +L +K N + + E + ++ G+
Sbjct: 3 PLDEIDSIHSRLRATFRSGKTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRPPFET 62
Query: 120 TLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRV---PLGVTAGITPFN 176
L + G L +++ + + E + R+ PLGV I P+N
Sbjct: 63 LLTEVSGVKNDILHMLKN---LKKWAKDEKVKDGPLAFMFGKPRIRKEPLGVVLIIGPWN 119
Query: 177 FPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVN 236
+P ++ L AIA G T V+KPSE P +L +++ + P V+ G
Sbjct: 120 YPVLLALSPLVGAIAAGCTVVLKPSELTPHTAALLAELVPKY-LDPDAFQVVQGGVPETT 178
Query: 237 FICDHP-DIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQL 295
+ + D I + GS + G+ I E AK+ V +G K+ ++ +A+ ++
Sbjct: 179 ALLEQKFD--KIFYTGSGRVGRIIAEAAAKHLTPVTLELGGKSPVIVTKNADLELAAKRI 236
Query: 296 VGAAFGAAGQRCMALSTVI--------FVGEAVEWLPELKKRAEALKVSAGNVPGTDLGP 347
+ FG AGQ C+A V+ FV E + L E G D
Sbjct: 237 LWGKFGNAGQICVAPDYVLVDPSVYDEFVEELKKVLDEFYPG--------GANASPDYTR 288
Query: 348 VISPQAKERILSLIQS--------GVDEGATLLL 373
+++P+ R+ SL+ + G + AT +
Sbjct: 289 IVNPRHFNRLKSLLDTTKGKVVIGGEMDEATRFI 322
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 99.1 bits (247), Expect = 2e-22
Identities = 79/344 (22%), Positives = 155/344 (45%), Gaps = 9/344 (2%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPA N+ + V +A+ + E + + ++A + W + R +++ ++ + ++A + L
Sbjct: 40 NPANNQPIAEVVEASLEDYEEGLRACEEAAKIWMQVPAPKRGEIVRQIGDALRAKLDYLG 99
Query: 111 ENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTA 170
++ E GK LA+ G+V + + + + + G + + + PLG+
Sbjct: 100 RLVSLEMGKILAEGIGEVQEIIDMCDFAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVG 159
Query: 171 GITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDP----GACMMLVDMLTQAGCPPGVVN 226
IT FNFP + W +A+ CGN V K + P ++ ++L + P +
Sbjct: 160 VITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAMTKLVAEVLEKNNLPGAIFT 219
Query: 227 VIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYER-GAKNGKRVQSNMGAKNHGVIMSD 285
G + I I +SF GS + G + + A+ GK + + N ++M D
Sbjct: 220 SFCGGAEIGEAIAKDTRIPLVSFTGSSKVGLMVQQTVNARFGKCLLE-LSGNNAIIVMDD 278
Query: 286 ANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGT 343
A+ + ++ AA G AGQRC + + E++ + L +L + +K+ GT
Sbjct: 279 ADIQLAVRSVLFAAVGTAGQRCTTCRR-LLLHESIYDDVLEQLLTVYKQVKIGDPLEKGT 337
Query: 344 DLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVGINVPIP 387
LGP+ +P++K+ I+ +G +L G ++ N P
Sbjct: 338 LLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIESEGNFVQP 381
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 97.7 bits (243), Expect = 4e-22
Identities = 85/330 (25%), Positives = 126/330 (38%), Gaps = 21/330 (6%)
Query: 70 ESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKT---LADAEG 126
E A+ +A + + + ++ R L R+ + A +A GK + G
Sbjct: 2 ERALLAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKGWMFAENICG 61
Query: 127 DV--LRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLW 184
D LR V IP G L G H YR P G I FNFP IPL
Sbjct: 62 DQVQLRARAFVIYSYRIPHEP-GNHL-GQGLKQQSHGYRWPYGPVLVIGAFNFPLWIPLL 119
Query: 185 MFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAG-CPPGVVNVIHGAHDAVNFICDHPD 243
A+A GN ++KP ++V +L AG PP V +I+G + + HP+
Sbjct: 120 QLAGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLPPEDVTLINGDGKTMQALLLHPN 179
Query: 244 IRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTL-NQLVGAAFGA 302
+ + F GS + + + AK R+ + N V+ DA + + Q V
Sbjct: 180 PKMVLFTGSSRVAEKLALD-AKQA-RIYLELAGFNWKVLGPDAQAVDYVAWQCVQDMTAC 237
Query: 303 AGQRCMALSTVIFVGEAVEWLPELKKRAEALKVSAGN--VPGTDLGPVISPQAKERILSL 360
+GQ+C A S ++FV E E LK + LGPV + I +
Sbjct: 238 SGQKCTAQS-MLFVPEN----WSKTPLVEKLKALLARRKLEDLLLGPVQTFTTLAMIAHM 292
Query: 361 IQSGVDEGATLLLDGRNLKVGINVPIPVPL 390
G+ LL G+ LK I
Sbjct: 293 ---ENLLGSVLLFSGKELKNHSIPSIYGAC 319
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 90.9 bits (226), Expect = 1e-19
Identities = 78/311 (25%), Positives = 131/311 (42%), Gaps = 22/311 (7%)
Query: 63 KATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLA 122
P + V K+++ T + R+Q L L +++ N ++ +E + ++ G+
Sbjct: 3 PDNPEIIPPIVKKLKESFLTGKTRPLEFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHPF 62
Query: 123 DAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIH-----SY--RVPLGVTAGITPF 175
+ + + L V E + + E L D SY PLGV I +
Sbjct: 63 ETKMTEV-LLTVAEIEHLLKHL--DEYLKPEKVDTVGVFGPGKSYIIPEPLGVVLVIGAW 119
Query: 176 NFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV 235
N+P + L AIA GNT V+KPSE P ++ +LT+ P V VI G +
Sbjct: 120 NYPLNLTLIPLAGAIAAGNTVVLKPSELSPHTSKLMAKLLTKY-LDPSYVRVIEGGVEVT 178
Query: 236 NFICDHP-DIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQ 294
+ P D I F GS + GK + + A+N +G K+ ++ N +
Sbjct: 179 TELLKEPFDH--IFFTGSPRVGKLVMQAAAENLTPCTLELGGKSPVIVDKSCNLKVAARR 236
Query: 295 LVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGT--DLGPVIS 350
+ F AGQ C+A V V ++ +++ LK EA+K G P D +++
Sbjct: 237 IAWGKFLNAGQTCVAPDYV-LVHRSIKDKFIEALK---EAIKEFFGEDPKKSEDYSRIVN 292
Query: 351 PQAKERILSLI 361
+R+ LI
Sbjct: 293 EFHTKRLAELI 303
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 89.5 bits (222), Expect = 4e-19
Identities = 84/350 (24%), Positives = 145/350 (41%), Gaps = 58/350 (16%)
Query: 47 IDLHNPATNE-VVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKAN 105
I +P ++ V+ + AT AV +A A + WS R + + +++
Sbjct: 48 IYQVSPHNHQAVLAKATNATEELANKAVEAALDAKKEWSLLPFYDRAAIFLKAADLLSGP 107
Query: 106 MKQLAENITE-EQGKTLADAEGDVLRGL------------QVVEQCCSIPTIMQGETLAG 152
+ T Q KT+ AE D + L ++ EQ Q + G
Sbjct: 108 YRAEILAATMLGQSKTVYQAEIDAVAELIDFFRFNAKYARELYEQ--------QPISAPG 159
Query: 153 VAKDMDIHSYRVPL-GVTAGITPFNFPAM------IPLWMFPVAIACGNTHVIKPSERDP 205
+ YR PL G I+PFNF A+ P M GNT + KPS+
Sbjct: 160 EWNRTE---YR-PLEGFVYAISPFNFTAIAGNLAGAPALM-------GNTVIWKPSDTAM 208
Query: 206 GACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGA 264
+ +++ +L +AG PPGV+N + G V + + PD+ I F GS K+++++ A
Sbjct: 209 LSNYLVMRILEEAGLPPGVINFVPGDGPLVSDTVLADPDLAGIHFTGSTPTFKHLWKQVA 268
Query: 265 KN-GK-----RVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE 318
+N + R+ G K+ V+ A+ + ++ + AF GQ+C A S ++V
Sbjct: 269 QNLDRYHNFPRIVGETGGKDFHVVHPSADVEHVVSGTIRGAFEYQGQKCSACSR-LYVPH 327
Query: 319 AV--EWLPELKKRAEALKVSAGNVPGTDL----GPVISPQAKERILSLIQ 362
++ + L +KV D G VI ++ +I+ I+
Sbjct: 328 SLWPRFKGRLLAELSRVKV----GDPDDFGTFMGAVIDEKSFAKIVKYIE 373
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 83.7 bits (208), Expect = 2e-17
Identities = 72/209 (34%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 165 PLGVTAGITPFNFP---AMIPLWMFPV-AIACGNTHVIKPSERDPGACMMLVDMLTQAGC 220
PLGV I P+N+P A+ PL + AIA GNT V+KPSE P A L+ L
Sbjct: 100 PLGVVLIIGPWNYPLQLALAPL----IGAIAAGNTVVLKPSELAP-ATSALLAKLIPKYF 154
Query: 221 PPGVVNVIHGAHDAVNFICDHP-DIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNH 279
P V V+ G + + P D I F GS GK + E AK+ V +G K+
Sbjct: 155 DPEAVAVVEGGVEVATALLAEPFDH--IFFTGSPAVGKIVMEAAAKHLTPVTLELGGKSP 212
Query: 280 GVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSA 337
++ DAN ++ F AGQ C+A V V E++ E + ELKK A+K
Sbjct: 213 CIVDKDANLEVAARRIAWGKFLNAGQTCIAPDYV-LVHESIKDELIEELKK---AIKEFY 268
Query: 338 GNVPG--TDLGPVISPQAKERILSLIQSG 364
G P D G +I+ + +R+ SL+ G
Sbjct: 269 GEDPKESPDYGRIINERHFDRLASLLDDG 297
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 70.6 bits (174), Expect = 4e-13
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 26/215 (12%)
Query: 162 YRVPLGVTAGITPFNFP---AMIPLWMFPV-AIACGNTHVIKPSERDPGACMMLVDMLTQ 217
Y P GV I P+N+P A+ PL + AIA GNT V+KPSE P ++ ++ +
Sbjct: 97 YYEPYGVVLIIAPWNYPFQLALAPL----IGAIAAGNTAVLKPSELTPNTSKVIAKIIEE 152
Query: 218 AGCPPGVVNVIHGAHDAVNFIC----DHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSN 273
V V+ G + + D+ I F GS + GK + E AK+ V
Sbjct: 153 T-FDEEYVAVVEGGVEENQELLDQKFDY-----IFFTGSVRVGKIVMEAAAKHLTPVTLE 206
Query: 274 MGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAE 331
+G K+ ++ DAN ++V F AGQ C+A + V E+V +++ ELK+ +
Sbjct: 207 LGGKSPCIVDEDANLKLAAKRIVWGKFLNAGQTCVA-PDYVLVHESVKEKFIKELKEEIK 265
Query: 332 ALKVSAGNVP--GTDLGPVISPQAKERILSLIQSG 364
G P D G +I+ + +R+ L+ +G
Sbjct: 266 KFY---GEDPLESPDYGRIINEKHFDRLAGLLDNG 297
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 69.9 bits (172), Expect = 5e-13
Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 12/217 (5%)
Query: 165 PLGVTAGITPFNFP---AMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCP 221
P GV I+P+N+P A PL AIA GNT ++KPSE P ++ ++ +A
Sbjct: 100 PKGVCLIISPWNYPFNLAFGPL---VSAIAAGNTAILKPSELTPHTSAVIAKIIREA-FD 155
Query: 222 PGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGV 281
V V G + + + P I F GS GK + AK+ V +G K+ +
Sbjct: 156 EDEVAVFEGDAEVAQALLELP-FDHIFFTGSPAVGKIVMAAAAKHLASVTLELGGKSPTI 214
Query: 282 IMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKR-AEALKVSAG 338
+ A+ ++ F AGQ C+A V FV E+V ++ LK + A
Sbjct: 215 VDETADLKKAAKKIAWGKFLNAGQTCIAPDYV-FVHESVKDAFVEHLKAEIEKFYGKDAA 273
Query: 339 NVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
DL +++ + +R+ L+ V +GA + G
Sbjct: 274 RKASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGG 310
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 67.1 bits (164), Expect = 5e-12
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 14/173 (8%)
Query: 165 PLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPSERDPGACMMLVDMLTQAGCPP 222
PLGV I+ +NFP L + PV AIA GN V+KPSE P +L ++ +
Sbjct: 101 PLGVVLVISAWNFP--FLLSLEPVIGAIAAGNAVVLKPSELAPATSALLAKLIPEY-LDT 157
Query: 223 GVVNVIHGAHDAVNFICDHP-DIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGV 281
+ VI G + + D I F GS + G+ I AK+ V +G K +
Sbjct: 158 KAIKVIEGGVPETTALLEQKWD--KIFFTGSPRVGRIIMAAAAKHLTPVTLELGGKCPVI 215
Query: 282 IMSDANRSNTLNQLVGAAFGA-AGQRCMA----LSTVIFVGEAVEWL-PELKK 328
+ S + + ++ G +G GQ C+A L F ++ L L+K
Sbjct: 216 VDSTVDLKVAVRRIAGGKWGCNNGQACIAPDYVLVEESFAPTLIDALKNTLEK 268
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 66.0 bits (162), Expect = 1e-11
Identities = 66/276 (23%), Positives = 105/276 (38%), Gaps = 56/276 (20%)
Query: 70 ESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVL 129
++A A+A A+E++ S R L + + I+A +L E G A +G++
Sbjct: 2 DAAAAAAAAAFESYRALSPARRAAFLEAIADEIEALGDELVARAHAETGLPEARLQGELG 61
Query: 130 RGLQVVEQCCSIPTIMQGETLAGVAKD--------------------MDIHSYRVPLGVT 169
R T Q A + ++ D+ VPLG
Sbjct: 62 R------------TTGQLRLFADLVREGSWLDARIDPADPDRQPLPRPDLRRMLVPLGPV 109
Query: 170 AGITPFNFP-AMIPLWMFPV-------AIACGNTHVIKPSERDPGACMMLVDMLTQA--- 218
A NFP A F V A+A G V+K PG ++ + A
Sbjct: 110 AVFGASNFPLA------FSVAGGDTASALAAGCPVVVKAHPAHPGTSELVARAIRAALRA 163
Query: 219 -GCPPGVVNVIHGAHDAVNF-ICDHPDIRAISFVGSDQAGKYIYERGAK--NGKRVQSNM 274
G P GV +++ G V + HP I+A+ F GS + G+ +++ A + +
Sbjct: 164 TGLPAGVFSLLQGGGREVGVALVKHPAIKAVGFTGSRRGGRALFDAAAARPEPIPFYAEL 223
Query: 275 GAKNHGVIMSDA--NRSNTLNQ-LVGAAFGAAGQRC 307
G+ N I+ A R + Q VG+ AGQ C
Sbjct: 224 GSVNPVFILPGALAERGEAIAQGFVGSLTLGAGQFC 259
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 63.1 bits (153), Expect = 1e-10
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 12/233 (5%)
Query: 165 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGV 224
PLGV I+ +N+P ++ + AI+ GN V+KPSE P + +L +L Q
Sbjct: 112 PLGVVLVISAWNYPFLLSIDPVIGAISAGNAVVLKPSELAPASSALLAKLLEQY-LDSSA 170
Query: 225 VNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMS 284
V V+ GA + + I + GS + G+ I AK+ V +G K+ V+ S
Sbjct: 171 VRVVEGAVTETTALLEQ-KWDKIFYTGSSKIGRVIMAAAAKHLTPVVLELGGKSPVVVDS 229
Query: 285 DANRSNTLNQLVGAAFGA-AGQRCMALSTVIFVGE-AVEWLPELKKRAEALKVSAGNVPG 342
D + T+ +++ +G GQ C++ ++ E A + + +KK E +
Sbjct: 230 DTDLKVTVRRIIAGKWGCNNGQACISPDYILTTKEYAPKVIDAMKKELETF-YGKNPMES 288
Query: 343 TDLGPVISPQAKERILSLIQSGVDEGATLLL-----DGRNLKVGINVPIPVPL 390
D+ +++ +R+ L+ E + ++ D NLK+ + + VPL
Sbjct: 289 KDMSRIVNSTHFDRLSKLLDE--KEVSDKIVYGGEKDRENLKIAPTILLDVPL 339
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 61.5 bits (150), Expect = 3e-10
Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 36/314 (11%)
Query: 70 ESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA---EG 126
AV A++A+ + + R Q L L +++ N ++ E + ++ K +A E
Sbjct: 1 AEAVRRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEI 60
Query: 127 DVLRGLQVVEQCCSIPTIMQGETLAGVAKDM-----DIHSYRVPLGVTAGITPFNFPAMI 181
+++ ++ ++P M+ E V K++ D++ Y+ PLGV I +N+P +
Sbjct: 61 LLVKN-EIKYAISNLPEWMKPEP---VKKNLATLLDDVYIYKEPLGVVLIIGAWNYP--L 114
Query: 182 PLWMFPV--AIACGNTHVIKPSERDPGACMMLVDMLTQ---AGCPPGVVNVIHGAHDA-- 234
L + P+ AIA GN VIKPSE P +L +++ + C P VV G +
Sbjct: 115 QLTLVPLVGAIAAGNCVVIKPSEVSPATAKLLAELIPKYLDKECYP-VVL--GGVEETTE 171
Query: 235 -VNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLN 293
+ D+ I + GS GK + + AK+ V +G K+ + +
Sbjct: 172 LLKQRFDY-----IFYTGSTSVGKIVMQAAAKHLTPVTLELGGKSPCYVDKSCDIDVAAR 226
Query: 294 QLVGAAFGAAGQRCMALSTVIFVGEAVE-WLPELKKRAEALKVSAGNVPGT--DLGPVIS 350
++ F AGQ C+A V+ E E ++ LKK LK G P D G +I+
Sbjct: 227 RIAWGKFINAGQTCIAPDYVLCTPEVQEKFVEALKK---TLKEFYGEDPKESPDYGRIIN 283
Query: 351 PQAKERILSLIQSG 364
+ +R+ L+ G
Sbjct: 284 DRHFQRLKKLLSGG 297
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 59.8 bits (146), Expect = 1e-09
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 37/225 (16%)
Query: 165 PLGVTAGITPFNFP---AMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCP 221
PLGV I P+N+P A+ PL A+A GN +IKPSE P +L ++L +
Sbjct: 101 PLGVVGIIVPWNYPLYLALGPL---IAALAAGNRVMIKPSEFTPRTSALLAELLAEYF-D 156
Query: 222 PGVVNVIHGAHD------AVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMG 275
V V+ G D ++ F DH + F GS G+++ A+N V +G
Sbjct: 157 EDEVAVVTGGADVAAAFSSLPF--DH-----LLFTGSTAVGRHVMRAAAENLTPVTLELG 209
Query: 276 AKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVI--------FVGEAVEWLPELK 327
K+ +I DA+ + ++ AGQ C+A V+ FV A + ++
Sbjct: 210 GKSPAIIAPDADLAKAAERIAFGKLLNAGQTCVAPDYVLVPEDKLEEFVAAAKAAVAKMY 269
Query: 328 KRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLL 372
D +I+ + R+ L++ +GA ++
Sbjct: 270 PTLAD---------NPDYTSIINERHYARLQGLLEDARAKGARVI 305
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 59.4 bits (144), Expect = 2e-09
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 165 PLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPSERDPGACMMLVDMLTQAGCPP 222
PLGV + +NFP I L + P+ AIA GN V+KPSE P L + +
Sbjct: 108 PLGVVLIFSSWNFP--IGLSLEPLIGAIAAGNAVVLKPSELAPATSAFLAANIPKY-LDS 164
Query: 223 GVVNVIHGAHDAVNFICDHP-DIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGV 281
V VI G + H D I F GS + G+ I AK+ V +G K +
Sbjct: 165 KAVKVIEGGPAVGEQLLQHKWD--KIFFTGSPRVGRIIMTAAAKHLTPVALELGGKCPCI 222
Query: 282 IMSDANRSNT---LNQLVGAAFGA-AGQRCMALSTVIFVGEAVEWLPELKK 328
+ S ++ +T +N++VG +G+ AGQ C+A+ V+ L EL K
Sbjct: 223 VDSLSSSRDTKVAVNRIVGGKWGSCAGQACIAIDYVLVEERFAPILIELLK 273
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 58.3 bits (141), Expect = 4e-09
Identities = 64/237 (27%), Positives = 95/237 (40%), Gaps = 39/237 (16%)
Query: 160 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAG 219
YR P G A ITPFNFP IP A+ GN ++K + + +L G
Sbjct: 137 SGYRWPYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLKVDSKVSVVMEQFLRLLHLCG 196
Query: 220 CPPGVVNVIHGAHDAVNFICDHPDIRAISFVGS---------DQAGKYIYERGAKNGKRV 270
P V++IH +N I + R F GS + GK E + K +
Sbjct: 197 MPATDVDLIHSDGPTMNKILLEANPRMTLFTGSSKVAERLALELHGKVKLEDAGFDWKIL 256
Query: 271 QSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVEW-----LPE 325
++ ++ D + A+ +GQ+C A S ++F E W L +
Sbjct: 257 GPDVSDVDYVAWQCDQD-----------AYACSGQKCSAQS-ILFAHE--NWVQAGILDK 302
Query: 326 LKKRAEALKVSAGNVPGTDL--GPVISPQAKERILSLIQSGVD-EGATLLLDGRNLK 379
LK AE K+ DL GPV++ ERIL + + GA +L G+ L
Sbjct: 303 LKALAEQRKLE-------DLTIGPVLT-WTTERILDHVDKLLAIPGAKVLFGGKPLT 351
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 55.6 bits (134), Expect = 3e-08
Identities = 77/360 (21%), Positives = 140/360 (38%), Gaps = 28/360 (7%)
Query: 40 ESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAK-KAYETWSKTSIITRQQVLFRL 98
+ + + + + +T EV+ RV + ++ +AVA A+ + R ++L L
Sbjct: 10 RTGQGEGVPVRDASTGEVLARV-TSEGLDVAAAVAWAREVGGPALRALTFHERARMLKAL 68
Query: 99 QNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCS-----IPT---IMQGETL 150
+ + L + G T D D+ G+ + S +P I + E
Sbjct: 69 AQYLSERKEALYA-LAATTGATRRDNWVDIDGGIGTLFTYSSLGRRELPDANLIPEDEFE 127
Query: 151 AGVAKDMDI---HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGA 207
++KD H GV I FNFP L F A G + KP+
Sbjct: 128 P-LSKDGSFQGRHILTPKGGVAVQINAFNFPVWGLLEKFAPAFLAGVPTLAKPATPTAYV 186
Query: 208 CMMLVDMLTQAG-CPPGVVNVIHGAHDAVNFICDHPDIR-AISFVGSDQAGKYIYERGAK 265
LV + ++G P G + +I G+ + DH D R ++F GS +
Sbjct: 187 AEALVRTMVESGLLPEGSLQLICGS---AGDLLDHLDHRDVVAFTGSAATADRLRAHPNV 243
Query: 266 NGKRVQSNMGAK--NHGVIMSDANRSNT-----LNQLVGAAFGAAGQRCMALSTVIFVGE 318
+ ++ N A N ++ DA ++V AGQ+C A+ VI
Sbjct: 244 LERGIRFNAEADSLNAAILGEDATPDEPEFDLFAQEIVRELTIKAGQKCTAIRRVIVPKA 303
Query: 319 AVEWLPE-LKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRN 377
+E + + L+ R + + G D+GP++S + + + + + + + GA + L G
Sbjct: 304 LLEAVLKALQARLAKVVLGDPREEGVDMGPLVSLEQRADVEAAVAALLAAGAEVRLGGPG 363
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 54.2 bits (130), Expect = 6e-08
Identities = 40/188 (21%), Positives = 60/188 (31%), Gaps = 17/188 (9%)
Query: 164 VPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPG 223
P+GVT I P P IA N + +P P + +L QA
Sbjct: 99 FPIGVTMHILPSTNPLSGITSAL-RGIATRNQCIFRPHPSAP-FTNRALALLFQAADAAH 156
Query: 224 -----VVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKN 278
V+ V H + + + HP I I G A + V +
Sbjct: 157 GPKILVLYVPHPSDELAEELLSHPKIDLIVATGGRDAVDAAVKHS--PHIPVIGFGAGNS 214
Query: 279 HGVIMSDANRSNTLNQLVGAAF--GAAGQRCMALSTVIFVGEAVEWLPE---LKKRAEAL 333
V+ A+ + + F A C + + V + ++ L E LK E L
Sbjct: 215 PVVVDETADEERASGSVHDSKFFDQNA---CASEQNLYVVDDVLDPLYEEFKLKLVVEGL 271
Query: 334 KVSAGNVP 341
KV P
Sbjct: 272 KVPQETKP 279
>gnl|CDD|143439 cd07121, ALDH_EutE, Ethanolamine utilization protein EutE-like.
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an
NAD+ and CoA-dependent acetaldehyde dehydrogenase,
acetylating (EC=1.2.1.10), converts acetaldehyde into
acetyl-CoA. This CD is limited to such monofunctional
enzymes as the Ethanolamine utilization protein, EutE,
in Salmonella typhimurium. Mutations in eutE abolish
the ability to utilize ethanolamine as a carbon source.
Length = 429
Score = 44.1 bits (105), Expect = 9e-05
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 38/221 (17%)
Query: 67 AEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG 126
A ++ AVA+AK A + + K ++ R++++ ++ + +N ++LAE EE G + E
Sbjct: 4 ATVDDAVAAAKAAQKQYRKCTLADREKIIEAIREALLSNAEELAEMAVEETG--MGRVED 61
Query: 127 DVLRGLQVVEQCCSIPTIMQGETLAGVAKDMD--IHSY-RVPLGVTAGITPFNFPA---- 179
+ + E P E L A D + P GV ITP P
Sbjct: 62 KIAKNHLAAE---KTPGT---EDLTTTAWSGDNGLTLVEYAPFGVIGAITPSTNPTETII 115
Query: 180 --MIPLWMFPVAIACGNTHVIKPSERDPGA---CMMLVDMLTQA----GCPPG-VVNVIH 229
I + +A GN V P PGA V+++ +A G P VV V
Sbjct: 116 NNSISM------LAAGNAVVFNPH---PGAKKVSAYAVELINKAIAEAGGPDNLVVTVEE 166
Query: 230 GAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV 270
+ N + HPDI + G G + + +GK+
Sbjct: 167 PTIETTNELMAHPDINLLVVTG----GPAVVKAALSSGKKA 203
>gnl|CDD|237956 PRK15398, PRK15398, aldehyde dehydrogenase EutE; Provisional.
Length = 465
Score = 43.0 bits (102), Expect = 2e-04
Identities = 53/244 (21%), Positives = 89/244 (36%), Gaps = 84/244 (34%)
Query: 67 AEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQG-------- 118
A ++ AVA+AK A + + + S+ RQ+++ ++ + + ++LAE EE G
Sbjct: 36 ASVDDAVAAAKVAQQRYQQKSLAMRQRIIDAIREALLPHAEELAELAVEETGMGRVEDKI 95
Query: 119 -KTLADAE--------------GDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYR 163
K +A AE GD GL ++E
Sbjct: 96 AKNVAAAEKTPGVEDLTTEALTGD--NGLTLIE--------------------------Y 127
Query: 164 VPLGVTAGITPFNFPA---------MIPLWMFPVAIACGNTHVIKPSERDPGA---CMML 211
P GV +TP P M +A GN+ V P PGA +
Sbjct: 128 APFGVIGAVTPSTNPTETIINNAISM---------LAAGNSVVFSPH---PGAKKVSLRA 175
Query: 212 VDMLTQA----GCPPGVVNVIHGAH-DAVNFICDHPDIRAISFVGSDQAGKYIYERGAKN 266
+++L +A G P +V + + + HP I + G G + + K+
Sbjct: 176 IELLNEAIVAAGGPENLVVTVAEPTIETAQRLMKHPGIALLVVTG----GPAVVKAAMKS 231
Query: 267 GKRV 270
GK+
Sbjct: 232 GKKA 235
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 37.8 bits (88), Expect = 0.012
Identities = 68/292 (23%), Positives = 110/292 (37%), Gaps = 43/292 (14%)
Query: 52 PATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAE 111
P E+ P+ P ++ +A+A+ A W R V + + A ++A
Sbjct: 72 PYGVELGVTYPQCDP---DALLAAARAAMPGWRDAGARARAGVCLEILQRLNARSFEMAH 128
Query: 112 NI--TEEQGKTLADAEG-----DVLRGLQVV----EQCCSIPTIMQGETLAGVAKD--MD 158
+ T Q +A G D RGL+ V + IP + E G M+
Sbjct: 129 AVMHTTGQAFMMAFQAGGPHAQD--RGLEAVAYAWREMSRIPPTAEWEKPQGKHDPLAME 186
Query: 159 IHSYRVPLGVTAGITPFNFPAMIPLW-----MFPVAIACGNTHVIKPSERDPGACMMLV- 212
VP GV I FP W +F ++A GN ++KP P A + L
Sbjct: 187 KTFTVVPRGVALVIGCSTFPT----WNGYPGLF-ASLATGNPVIVKPH---PAAILPLAI 238
Query: 213 ------DMLTQAGCPPGVVNVI--HGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGA 264
++L +AG P +V + + P++R I F GS+ G ++ E A
Sbjct: 239 TVQVAREVLAEAGFDPNLVTLAADTPEEPIAQTLATRPEVRIIDFTGSNAFGDWL-EANA 297
Query: 265 KNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFV 316
+ +V + N V+ S + L L + +GQ C I+V
Sbjct: 298 R-QAQVYTEKAGVNTVVVDSTDDLKAMLRNLAFSLSLYSGQMCTT-PQNIYV 347
>gnl|CDD|131341 TIGR02288, PaaN_2, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has a
domain which is a member of the pfam00171 family. This
family includes sequences from Burkholderia, Bordetella,
Streptomyces. Other PaaN enzymes are represented by a
separate model, TIGR02278.
Length = 551
Score = 37.2 bits (86), Expect = 0.016
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 157 MDIHSYRVPLGVTAGITPFNFPAMIPLW-MFP---VAIACGNTHVIKPSERDPGACMMLV 212
+ VP G+ I FP W +P ++A GN ++KP PGA + L
Sbjct: 185 LKKRFTIVPRGIALVIGCSTFPT----WNTYPGLFASLATGNPVLVKPH---PGAILPLA 237
Query: 213 -------DMLTQAGCPPGVVNVI--HGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERG 263
++L +AG P +V + H+A + P +R I F GS+ G+++ E+
Sbjct: 238 LTVQVAREVLGEAGFDPNLVTLAAFDPGHEAAQRLATDPAVRIIDFTGSNAFGQWL-EQN 296
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMA 309
A+ + V + N +I S + L L + +GQ C
Sbjct: 297 ARQAQ-VYTEKAGVNTVIIESTDDYKAMLRNLAFSLSLYSGQMCTT 341
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 36.4 bits (84), Expect = 0.031
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 23/167 (13%)
Query: 76 AKKAYETWSKTSIITRQQVLFRLQNIIKA---NMKQLAENITEEQG------KTLADAEG 126
+ A K + +T++Q+ ++ I+ A N +LA+ EE G K + +
Sbjct: 14 IRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWEDKVIKN--- 70
Query: 127 DVLRGLQVVEQCCSIPTI-MQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWM 185
V V + + TI + E K ++I VP+GV AG+ P P ++
Sbjct: 71 -VFAATIVYDSIKDMKTIGILSEDK--EKKVIEI---AVPVGVVAGLIPSTNPTSTAIYK 124
Query: 186 FPVAIACGNTHVIKPSERDPGACMMLVDMLTQ----AGCPPGVVNVI 228
++I N V P + V ++ + AG P G + I
Sbjct: 125 TLISIKARNAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIGCI 171
>gnl|CDD|143400 cd07081, ALDH_F20_ACDH_EutE-like, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), Ethanolamine utilization protein
EutE, and related proteins. Coenzyme A acylating
aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent
acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10),
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium) or
as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA. The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH, and may be
critical enzymes in the fermentative pathway.
Length = 439
Score = 34.2 bits (78), Expect = 0.14
Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 24/228 (10%)
Query: 69 MESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDV 128
++ AVA+AK A + S S + + LA+ E G E V
Sbjct: 1 LDDAVAAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSETGMGRV--EDKV 58
Query: 129 L------RGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIP 182
+ + V + ++ G+ G + P+GV A ITP P
Sbjct: 59 IKNHFAAEYIYNVYKDEKTCGVLTGDENGGTLIIAE------PIGVVASITPSTNPTSTV 112
Query: 183 LWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPG-----VVNVIHGAHDAVNF 237
++ +++ N+ + P R +L QA G + + + + +
Sbjct: 113 IFKSLISLKTRNSIIFSPHPRAKKVTQRAATLLLQAAVAAGAPENLIGWIDNPSIELAQR 172
Query: 238 ICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSD 285
+ P I + G G + + +GK +GA N V++ +
Sbjct: 173 LMKFPGIGLLLATG----GPAVVKAAYSSGKPAIG-VGAGNTPVVIDE 215
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 33.6 bits (78), Expect = 0.18
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 164 VPLGVTAGITPFNFPAMIPLWMFPVAIA--CGNTHVIKPSERDPGACMMLVDMLTQA--- 218
P+GV A + P P +F IA N + P R + ++ +A
Sbjct: 94 EPVGVIAALIPSTNPTSTA--IFKALIALKTRNAIIFSPHPRAKKCSIEAAKIMREAAVA 151
Query: 219 -GCPPGVVNVI-HGAHDAVNFICDHPDIRAI 247
G P G++ I + + + HPD+ I
Sbjct: 152 AGAPEGLIQWIEEPSIELTQELMKHPDVDLI 182
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 33.9 bits (78), Expect = 0.18
Identities = 63/243 (25%), Positives = 95/243 (39%), Gaps = 51/243 (20%)
Query: 164 VPL-GVTAGITPFNFPAMIPLW-MFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGC- 220
VP GV I FNFPA LW A+ G ++KP+ +V + AG
Sbjct: 146 VPTRGVALFINAFNFPAW-GLWEKAAPALLAGVPVIVKPATATAWLTQRMVKDVVAAGIL 204
Query: 221 PPGVVNVIHGAH----DAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGA 276
P G ++V+ G+ D + D +SF GS + + A + V+ N+ A
Sbjct: 205 PAGALSVVCGSSAGLLDHLQ-PFD-----VVSFTGSAETAAVLRSHPAVVQRSVRVNVEA 258
Query: 277 K--NHGVIMSDANRSNTLNQLVGAAFGA------------AGQRCMALSTVIFVGEAVEW 322
N ++ DA AF +GQ+C A+ IFV EA+
Sbjct: 259 DSLNSALLGPDAAPG-------SEAFDLFVKEVVREMTVKSGQKCTAIRR-IFVPEAL-- 308
Query: 323 LPELKKRAEAL-----KVSAGNVPGTD---LGPVISPQAKERILSLIQSGVDEGATLLLD 374
AEAL K + GN P D +GP++S + + + + A +L D
Sbjct: 309 ---YDAVAEALAARLAKTTVGN-PRNDGVRMGPLVSRAQLAAVRAGLA-ALRAQAEVLFD 363
Query: 375 GRN 377
G
Sbjct: 364 GGG 366
>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
Length = 569
Score = 31.7 bits (73), Expect = 0.89
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIP 142
TRQ F+ I+K N+K + + I TLA A GDV R + C P
Sbjct: 111 TRQT--FQFHGILKKNLKPVIQTINSVLLDTLA-ACGDVNRNV----MCTPNP 156
>gnl|CDD|213736 TIGR02773, addB_Gpos, helicase-exonuclease AddAB, AddB subunit. DNA
repair is accomplished by several different systems in
prokaryotes. Recombinational repair of double-stranded
DNA breaks involves the RecBCD pathway in some lineages,
and AddAB (also called RexAB) in other. The AddA protein
is conserved between the firmicutes and the
alphaproteobacteria, while the partner protein is not.
Nevertheless, the partner is designated AddB in both
systems. This model describes the AddB protein as found
Bacillus subtilis and related species. Although the RexB
protein of Streptococcus and Lactococcus is considered to
be orthologous, functionally equivalent, and merely named
differently, all members of this protein family have a
P-loop nucleotide binding motif GxxGxGK[ST] at the
N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif
at the C-terminus, both of which may be relevant to
function [DNA metabolism, DNA replication, recombination,
and repair].
Length = 1160
Score = 31.2 bits (71), Expect = 1.2
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 74 ASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITE 115
AS KK S++ T ++ L+ ++ ++ ENIT+
Sbjct: 1062 ASLKKDGSLGSRSKAATEEE-FELLRKHVRRKFQEAGENITD 1102
>gnl|CDD|185342 PRK15445, PRK15445, arsenical pump membrane protein; Provisional.
Length = 427
Score = 30.9 bits (71), Expect = 1.4
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 25/62 (40%)
Query: 339 NVPGTDLGPVISPQAKERILSLIQSGVDEGATLL----LDGRNL--------KVGINVPI 386
NV G+DLGP I+P I SL ATLL L + + KVGI + +
Sbjct: 364 NVIGSDLGPKITP-----IGSL--------ATLLWLHVLAQKGVKISWGYYFKVGIIITL 410
Query: 387 PV 388
PV
Sbjct: 411 PV 412
>gnl|CDD|119386 cd00163, RNase_A, RNase A family, or Pancreatic RNases family;
includes vertebrate RNase homologs to the bovine
pancreatic ribonuclease A (RNase A). Many of these
enzymes have special biological activities; for example,
some stimulate the development of vascular endothelial
cells, dendritic cells, and neurons, are
cytotoxic/anti-tumoral and/or anti-pathogenic. RNase A
is involved in endonucleolytic cleavage of
3'-phosphomononucleotides and 3'-phosphooligonucleotides
ending in C-P or U-P with 2',3'-cyclic phosphate
intermediates. The catalytic mechanism is a
transphosphorylation of P-O 5' bonds on the 3' side of
pyrimidines and subsequent hydrolysis to generate 3'
phosphate groups. The RNase A family proteins have a
conserved catalytic triad (two histidines and one
lysine); recently some family members lacking the
catalytic residues have been identified. They also share
three or four disulfide bonds. The most conserved
disulfide bonds are close to the N and C termini and
contribute most significantly to the conformational
stability. 8 RNase A homologs had initially been
identified in the human genome, pancreatic RNase (RNase
1), Eosinophil Derived Neurotoxin (EDN/RNASE 2),
Eosinophil Cationic Protein (ECP/RNase 3), RNase 4,
Angiogenin (RNase 5), RNase 6 or k6, the skin derived
RNase (RNase 7) and RNase 8. These eight human genes are
all located in a cluster on chromosome 14. Recent
genomic analysis has extended the family to 13
sequences. However only the first eight identified human
RNases, which are refered to as "canonical" RNases,
contain the catalytic residues required for RNase A
activity. The new genes corresponding to RNases 9-13 are
also located in the same chromosome cluster and seem to
be related to male-reproductive functions. RNases 9-13
have the characteristic disulfide bridge pattern but are
unlikely to share RNase activity. The RNase A family
most likely started off in vertebrates as a host-defense
protein, and comparative analysis in mammals and birds
indicates that the family may have originated from a
RNase 5-like gene. This hypothesis is supported by the
fact that only RNase 5-like RNases have been reported
outside the mammalian class. The RNase 5 group would
therefore be the most ancient form of this family, and
all other members would have arisen during mammalian
evolution.
Length = 119
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 199 KPSERDPGAC--MMLVDMLTQAG-CPPGVVNVIHGAHDAVNFICDHPDIR 245
S DP C MM +T+ G C IH + + V +C++P +
Sbjct: 14 PKSNGDPRYCNSMMRRKKVTENGSCKK-QHTFIHESLEEVQAVCNNPSVF 62
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 30.5 bits (69), Expect = 1.6
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 27/174 (15%)
Query: 76 AKKAYETWSKTSIITRQQVLFRLQNIIKANMKQ-LAEN-----------ITEEQGKTLAD 123
AK+A ++ S + L ++ + ++A LA N + + L
Sbjct: 1 AKQAANILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLL 60
Query: 124 AEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKD--MDIHSYRVPLGVTAGITPFNFPAMI 181
EG + V+ + + G+ + G D + + RVPLGV I + A
Sbjct: 61 TEGRLKGIADGVKDVIELADPV-GKVIDGRELDSGLTLERVRVPLGVLGVI----YEAR- 114
Query: 182 PLWMFPVAIAC---GNTHVIKPSERDPGACMMLV----DMLTQAGCPPGVVNVI 228
P +A C GN +++ + + LV D L Q G P G V +I
Sbjct: 115 PNVTVDIASLCLKTGNAVILRGGKEAVRSNKALVEVIQDALAQTGLPVGAVQLI 168
>gnl|CDD|143399 cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC. Acyl-CoA
reductase, LuxC, (EC=1.2.1.50) is the fatty acid
reductase enzyme responsible for synthesis of the
aldehyde substrate for the luminescent reaction
catalyzed by luciferase. The fatty acid reductase, a
luminescence-specific, multienzyme complex (LuxCDE),
reduces myristic acid to generate the long chain fatty
aldehyde required for the luciferase-catalyzed reaction
resulting in the emission of blue-green light.
Mutational studies of conserved cysteines of LuxC
revealed that the cysteine which aligns with the
catalytic cysteine conserved throughout the ALDH
superfamily is the LuxC acylation site. This CD is
composed of mainly bacterial sequences but also includes
a few archaeal sequences similar to the Methanospirillum
hungateiacyl acyl-CoA reductase RfbN.
Length = 422
Score = 30.7 bits (70), Expect = 1.6
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 163 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGA----CMMLVDM---- 214
P G+ I N P ++P+W + N +++K S DP L D+
Sbjct: 110 AQPRGLVVHIIAGNVP-LLPVWSIVRGLLVKNVNLLKMSSSDPLTATALLRSLADVDPNH 168
Query: 215 -LTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYI 259
LT + VV G + I D A+ G ++A K I
Sbjct: 169 PLTDSIS---VVYWPGGDAELEERILASAD--AVVAWGGEEAVKAI 209
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 30.7 bits (70), Expect = 1.6
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 14/207 (6%)
Query: 164 VPL-GVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAG-CP 221
P GV I FNFP L F A+ G ++KP+ +V + ++G P
Sbjct: 142 TPRRGVAVHINAFNFPVWGMLEKFAPALLAGVPVIVKPATATAYLTEAVVKDIVESGLLP 201
Query: 222 PGVVNVIHGAHDAVNFICDHPDIR-AISFVGSDQAGKYIYERGAKNGKRVQSNMGAK--N 278
G + +I G+ V + DH + ++F GS + + ++ N A N
Sbjct: 202 EGALQLICGS---VGDLLDHLGEQDVVAFTGSAATAAKLRAHPNIVARSIRFNAEADSLN 258
Query: 279 HGVIMSDANRSNT-----LNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPE-LKKRAEA 332
++ DA + ++ AGQ+C A+ V+ + E LK R
Sbjct: 259 AAILGPDATPGTPEFDLFVKEVAREMTVKAGQKCTAIRRAFVPEARVDAVIEALKARLAK 318
Query: 333 LKVSAGNVPGTDLGPVISPQAKERILS 359
+ V + G +GP++S + +E + +
Sbjct: 319 VVVGDPRLEGVRMGPLVSREQREDVRA 345
>gnl|CDD|213358 cd12824, ZntB-like, Salmonella typhimurium Zn2+ transporter
ZntB-like subfamily. A bacterial subfamily belonging to
the Escherichia coli CorA-Salmonella typhimurium
ZntB_like family (EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This subfamily includes the Zn2+ transporter
Salmonella typhimurium ZntB which mediates the efflux of
Zn2+ (and Cd2+). Structures of the intracellular domain
of Vibrio parahaemolyticus and Salmonella typhimurium
ZntB form funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, which occur
in proteins belonging to this subfamily, may be
associated with the transport of different divalent
cations, such as zinc and cadmium. The functional
diversity of MIT transporters may also be due to minor
structural differences regulating gating, substrate
selection, and transport.
Length = 290
Score = 30.2 bits (68), Expect = 2.2
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 84 SKTSIITRQQVLFRLQNIIKANMKQL-------AENITEEQGKTLADAEGDVLRGLQVVE 136
++I Q+ LFR++ I+ + L AE + +TL A +V R L+ ++
Sbjct: 146 PPYALIALQRRLFRIRRQIRPQQQALRPLITDPAELLVTSDRETLRRASNNVTRYLETLD 205
Query: 137 QCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNF 177
C + ++Q E A + S + + V P F
Sbjct: 206 FCRTRVALLQDEIKAQRDEKTTRSSLLLTV-VATVFLPLTF 245
>gnl|CDD|191617 pfam06830, Root_cap, Root cap. The cells at the periphery of the
root cap are continuously sloughed off from the root
into the mucilage, and are thought to be programmed to
die.This family represents a conserved region
approximately 60 residues in length within plant root
cap proteins, which may be involved in the process.
Length = 57
Score = 27.6 bits (62), Expect = 2.2
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 413 GFYFYTETKTVT----QLWRESDVTHSKAAVSMPVM 444
GF FY + V Q +R V K SMPVM
Sbjct: 1 GFKFYDLSDDVHGVLGQTYRPDYVNPVKVGASMPVM 36
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 30.1 bits (68), Expect = 2.4
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 84 SKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLR 130
TS I RQ+ RL+ +I ++K+L +++T E + + E +
Sbjct: 36 QCTSAIARQR--KRLKQLIV-SLKKLKKSLTPEDSELVEQLEEQIKE 79
>gnl|CDD|218799 pfam05893, LuxC, Acyl-CoA reductase (LuxC). This family consists
of several bacterial Acyl-CoA reductase (LuxC) proteins.
The channelling of fatty acids into the fatty aldehyde
substrate for the bacterial bioluminescence reaction is
catalyzed by a fatty acid reductase multienzyme complex,
which channels fatty acids through the thioesterase
(LuxD), synthetase (LuxE) and reductase (LuxC)
components.
Length = 400
Score = 30.0 bits (68), Expect = 2.6
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 163 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGA 207
P G+ + N P ++P+ I N +++KPS DP
Sbjct: 86 AQPRGLVVHVLAGNVP-LLPVMSILQGILVKNVNLLKPSSSDPFT 129
>gnl|CDD|224439 COG1522, Lrp, Transcriptional regulators [Transcription].
Length = 154
Score = 28.5 bits (64), Expect = 4.2
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 349 ISPQA-KERILSLIQSGVDEGATLLLDGRNLKVGINVPIPVPLS 391
+SP RI L + GV +G T +LD L + + + V L
Sbjct: 34 LSPSTVLRRIKRLEEEGVIKGYTAVLDPEKLGLDLTAFVEVKLE 77
>gnl|CDD|153389 cd07952, ED_3B_like, Uncharacterized class III extradiol
dioxygenases. This subfamily is composed of proteins of
unknown function with similarity to the catalytic B
subunit of class III extradiol dioxygenases. Class III
extradiol dioxygenases use a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. They play key roles in
the degradation of aromatic compounds.
Length = 256
Score = 28.8 bits (65), Expect = 4.7
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 148 ETLAGVAKDMDIHSYRVPLGVTAG---ITPFNFPAMIPLWMFP 187
+ A+ I + ++G P ++ +IPL
Sbjct: 84 NEIYKSARADGIPVLGINFATSSGDNSDFPLDWGELIPLSFLK 126
>gnl|CDD|182040 PRK09707, PRK09707, putative lipoprotein; Provisional.
Length = 1343
Score = 29.3 bits (65), Expect = 5.5
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 224 VVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIM 283
+V V G+H VN D +F+G+ +A +YIY A +G+ S G + G+I
Sbjct: 318 LVGVQDGSHGVVNVT----DKGHWNFLGTGEAFRYIYIGDAGDGELNVSREGKVDSGIIT 373
Query: 284 SDANRSNTLNQLV 296
+ + T N V
Sbjct: 374 AGMKETGTGNLTV 386
>gnl|CDD|234344 TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL
family. Members of this protein are assigned by
homology to the TraD family of conjugative coupling
factor. This particular clade serves as a marker for an
extended gene region that occurs occasionally on
plasmids, including the toluene catabolism TOL plasmid.
More commonly, the gene region is chromosomal, flanked
by various markers of conjugative transfer and
insertion.
Length = 643
Score = 29.3 bits (66), Expect = 5.7
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 56 EVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR-----------QQVLFRLQNIIKA 104
EV TR+ E SA A K + W +I+ R Q +L + NI
Sbjct: 264 EVATRITGQLSGEGNSA---AFKEF-AWRFVNIVARALVALGQRPDYQLILRYVTNIDPL 319
Query: 105 NMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRV 164
M + A+ I + +++ L + ++P MQG VA + + R+
Sbjct: 320 FM-EYADKILPKHDPKAW----ELIEELIARLKDRNVPRNMQGRPPRVVAIEQYLKEKRL 374
Query: 165 P 165
Sbjct: 375 Y 375
>gnl|CDD|217546 pfam03417, AAT, Acyl-coenzyme A:6-aminopenicillanic acid
acyl-transferase.
Length = 223
Score = 28.4 bits (64), Expect = 5.8
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 169 TAGITPFNFPAMIPLWMFPV---AIACGNT--HVIKPSERDPGACMMLVDMLTQAGCPPG 223
+G + IP + +A G H+ K + P + +L +
Sbjct: 30 ESGFATIGYAGRIPGRTDGINEAGLAMGINFLHLRKLGDGFP--RHFITRLLLECT---- 83
Query: 224 VVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIY 260
+V +AV + + P +++ D AG
Sbjct: 84 --SV----EEAVKALKEIPHAAGFNYILLDAAGNIAV 114
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 29.3 bits (65), Expect = 5.9
Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 30/138 (21%)
Query: 261 ERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV 320
E A NG S G+ +D+N S +N G+ + S V
Sbjct: 63 EFSAMNGHAPHSPHGSD------TDSNESKAVNPGPGSIRSSDSSAK---SDV------- 106
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
L +L KRA + + + PGT I Q + ++ G D G D
Sbjct: 107 --LRKLLKRANSYEDAMMPFPGT----TIISQLLKNNMAKNGGGPDRGEGDRGDREAP-- 158
Query: 381 GINVPIPVPLSMFSFTGS 398
P S S T
Sbjct: 159 ------SFPASALSNTKP 170
>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase. Distantly related to
the iron-sulfur hemoprotein of sulfite reductase (NADPH)
found in Proteobacteria and Eubacteria, sulfite
reductase (ferredoxin) is a cyanobacterial and plant
monomeric enzyme that also catalyzes the reduction of
sulfite to sulfide [Central intermediary metabolism,
Sulfur metabolism].
Length = 577
Score = 29.0 bits (65), Expect = 6.2
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLR 130
TRQ F+L I+K N+K + I + G TL A GD+ R
Sbjct: 101 TRQT--FQLHGILKKNLKTVISTIVKNLGSTLG-ACGDLNR 138
>gnl|CDD|184851 PRK14849, PRK14849, putative lipoprotein/autotransporter
domain-containing protein; Provisional.
Length = 1806
Score = 28.9 bits (64), Expect = 6.6
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 224 VVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIM 283
+V V G+H VN D +F+G+ +A +YIY A +G+ S G + G+I
Sbjct: 318 LVGVQDGSHGVVNVT----DKGHWNFLGTGEAFRYIYIGDAGDGELNVSREGKVDSGIIT 373
Query: 284 SDANRSNTLN 293
+ + T N
Sbjct: 374 AGMKETGTGN 383
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 28.5 bits (64), Expect = 7.5
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 316 VGEAVEWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATL 371
VGEA+ WL KK E LK +G L + ++R + +E TL
Sbjct: 312 VGEAIGWLRAAKKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTL 367
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 28.6 bits (63), Expect = 7.5
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 14/146 (9%)
Query: 34 IDGKFVESKATDWIDL------HNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTS 87
+D K V+ + IDL P +E KA ++ A A W T
Sbjct: 256 LDPKRVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTY 315
Query: 88 IITRQQVLFRLQNIIKANMKQLAEN-ITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQ 146
++ QVL + Q ++ MK+ +TE+ K L R L V++ I ++
Sbjct: 316 LMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLP-----YFRAL--VKETLRIEPVIP 368
Query: 147 GETLAGVAKDMDIHSYRVPLGVTAGI 172
+D I Y +P G T +
Sbjct: 369 LLIPRACIQDTKIAGYDIPAGTTVNV 394
>gnl|CDD|130895 TIGR01836, PHA_synth_III_C, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaC subunit. This model represents the PhaC
subunit of a heterodimeric form of polyhydroxyalkanoic
acid (PHA) synthase. Excepting the PhaC of Bacillus
megaterium (which needs PhaR), all members require PhaE
(TIGR01834) for activity and are designated class III.
This enzyme builds ester polymers for carbon and energy
storage that accumulate in inclusions, and both this
enzyme and the depolymerase associate with the
inclusions. Class III enzymes polymerize
short-chain-length hydroxyalkanoates [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 350
Score = 28.2 bits (63), Expect = 8.5
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 19 TFRQFIRHIATTKLYIDGKF-VESKATDWIDLHN---PATNEVVTR---VPKATPAEMES 71
FRQF++ I+G+ + + +DL N P N R VP +
Sbjct: 254 AFRQFVKDFYQQNGLINGEVEIGGRK---VDLKNIKMPILNIYAERDHLVPPDASKALND 310
Query: 72 AVASAKKAY 80
V+S
Sbjct: 311 LVSSEDYTE 319
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.399
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,277,216
Number of extensions: 2154479
Number of successful extensions: 2697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2309
Number of HSP's successfully gapped: 177
Length of query: 445
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 345
Effective length of database: 6,502,202
Effective search space: 2243259690
Effective search space used: 2243259690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)