RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10608
(445 letters)
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 623 bits (1610), Expect = 0.0
Identities = 154/356 (43%), Positives = 226/356 (63%), Gaps = 2/356 (0%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKT 86
+ +IDGK V + ++ NPAT EV V A+ A++ +AV SAK A W+ T
Sbjct: 24 MYELGHFIDGKRVAGTSGRVSNIFNPATGEVQGTVALASDADLAAAVESAKAAQPKWAAT 83
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQ 146
+ R +V + ++ NM +LAE ++ E GKT+ DA+GD++RGL+V E IP + +
Sbjct: 84 NPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTIDDAKGDIVRGLEVCEFVIGIPHLQK 143
Query: 147 GETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG 206
E G +D++S R P+G+ AGITPFNFP MIP+WMF AIACGN ++KPSERDP
Sbjct: 144 SEFTEGAGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPS 203
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKN 266
+ L +++ +AG P G++NV++G AV+ I HPDI A+SFVGS +Y+Y A N
Sbjct: 204 VPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAAMN 263
Query: 267 GKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLP 324
GKR Q GAKNH +IM DA+ N L+GA +G+AG+RCMA+S + VGE +
Sbjct: 264 GKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETANRLID 323
Query: 325 ELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
+L E+L++ D+GPV++ +A++RI SLI SG+++GA L++DGR+ K+
Sbjct: 324 KLVPMVESLRIGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKL 379
Score = 113 bits (285), Expect = 2e-27
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 380 VGINVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDVTHSKAAV 439
VG+NVPIPVPL+ SF G + S G+ + +G F+T TKT+T W A
Sbjct: 458 VGVNVPIPVPLAYHSFGGWKSSSFGDLNQHGTDSIKFWTRTKTITSRWPSG--IKDGAEF 515
Query: 440 SMPVMQ 445
S+P M+
Sbjct: 516 SIPTMR 521
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 616 bits (1590), Expect = 0.0
Identities = 163/355 (45%), Positives = 241/355 (67%), Gaps = 1/355 (0%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKT 86
I K YI+G++VESK + D+ NPAT EV+ +VP +T +++ A +A +A++TWSK
Sbjct: 3 IRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKV 62
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQ 146
++ R ++LF Q ++ + ++LA IT E GK +A G+V RG++ VE P++M
Sbjct: 63 AVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMM 122
Query: 147 GETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG 206
G++LA +A D++ +YR P+GV GI PFNFP M+P WMFP+AIA GNT ++KPSER P
Sbjct: 123 GDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPL 182
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKN 266
LV++ +AG P GV NV++GAHD VN I +HP+I+AISFVGS G+Y+Y++G++N
Sbjct: 183 LTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSEN 242
Query: 267 GKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE-AVEWLPE 325
KRVQS GAKNH ++++DAN +T+ +VGAAFG+AG+RCMA + V A E++ +
Sbjct: 243 LKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAK 302
Query: 326 LKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
L+++ +K+ G G LGPVI K+R LS I+ G++EGA L+ DGR
Sbjct: 303 LQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVS 357
Score = 104 bits (262), Expect = 2e-24
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 380 VGINVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDV 432
+GIN+ +P P++ F F+G + SF G H GK FYT K VT + D
Sbjct: 433 LGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 485
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 307 bits (788), Expect = e-100
Identities = 91/356 (25%), Positives = 164/356 (46%), Gaps = 7/356 (1%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKT 86
I TK I G++VE + NP + V+ +A+ A++++A +AKKA W+ T
Sbjct: 10 IDATKHLIGGQWVEGNSDRISTNINPYDDSVIAESKQASIADVDAAYEAAKKAQAEWAAT 69
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQ 146
R +++R +++ + +++ E + +E G T + A ++ + ++ S P +
Sbjct: 70 PAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSKANLEITLAGNITKESASFPGRVH 129
Query: 147 GETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG 206
G + YRV GV I+P+NFP + + A+A GN VIKP+ P
Sbjct: 130 GRISPSNTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPALAVGNAVVIKPASDTPV 189
Query: 207 -ACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER-- 262
++ + +AG P GV++ + G + + H + ISF GS G+ + E
Sbjct: 190 TGGVIPARIFEEAGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAI 249
Query: 263 GAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-- 320
K V +G V+++DA+ AF GQ CM+++ + V AV
Sbjct: 250 NGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINR-VIVDAAVHD 308
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
E+L + + + + + GT +GPVI+ + I+ EGAT+ ++G
Sbjct: 309 EFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGP 364
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 301 bits (773), Expect = 2e-97
Identities = 104/357 (29%), Positives = 163/357 (45%), Gaps = 14/357 (3%)
Query: 29 TTKLYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTS 87
L I+G+ V ++ I NPA +++V V KA E A+ SA +A++TW +
Sbjct: 37 EYPLIINGERVTTEDK--IQSWNPARKDQLVGSVSKANQDLAEKAIQSADEAFQTWRNVN 94
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQG 147
R +L + II+ + + + E GK +A+ D + +E +
Sbjct: 95 PEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQMIELNR 154
Query: 148 ETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGA 207
+ P+GVT I+P+NF I + I GNT V+KP+ P
Sbjct: 155 GKEILSRPGEQNRYFYTPMGVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVV 214
Query: 208 CMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER---- 262
V++L AG P GV+N + G + +++ DHP I+F GS G +YER
Sbjct: 215 AAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVV 274
Query: 263 --GAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV 320
G + KRV MG K+ V+ DA+ ++ +AFG +GQ+C A S + + V
Sbjct: 275 RPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGS-RAVIHKDV 333
Query: 321 --EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
E L + A+ L V +GPVI +A E+I+S I+ G EG L+ G
Sbjct: 334 YDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGG 389
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 296 bits (761), Expect = 7e-96
Identities = 109/376 (28%), Positives = 176/376 (46%), Gaps = 17/376 (4%)
Query: 8 PSLQRTPSHMKTFRQFIRHIATTKLYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATP 66
+ + ++ R+ LYI G++V++K + NP+ +EVV KA
Sbjct: 18 EARRAMREALRRVREEFGR--HYPLYIGGEWVDTKER--MVSLNPSAPSEVVGTTAKAGK 73
Query: 67 AEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG 126
AE E+A+ +A KA++TW R ++L + +++ ++L + E GK +A
Sbjct: 74 AEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASA 133
Query: 127 DVLRGLQVVEQCCSIPTIMQGETLAGV-AKDMDIHSYRVPLGVTAGITPFNFPAMIPLWM 185
DV + +E + + V D S+ VPLG I P+NFP I M
Sbjct: 134 DVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGM 193
Query: 186 FPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDI 244
+A GNT + KP+E + ++ +AG PPGVVN + G + ++ +HP I
Sbjct: 194 IVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRI 253
Query: 245 RAISFVGSDQAGKYIYERGAK------NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGA 298
R I+F GS + G IYE + KR G KN ++ A+ +V +
Sbjct: 254 RFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVS 313
Query: 299 AFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKER 356
A+G GQ+C A S + + + L + KRAE L V DLGPV+S + + +
Sbjct: 314 AYGFQGQKCSAAS-RLILTQGAYEPVLERVLKRAERLSVGPAE-ENPDLGPVVSAEQERK 371
Query: 357 ILSLIQSGVDEGATLL 372
+LS I+ G +EG +L
Sbjct: 372 VLSYIEIGKNEGQLVL 387
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 294 bits (755), Expect = 3e-95
Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 10/358 (2%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
+ YI G+++ + + ++ +P VV A ++++AV +A++A+ W++ +
Sbjct: 6 STHYIAGQWLAGQG-ETLESLDPVGQGVVWSGRGADATQVDAAVCAAREAFPAWARRPLE 64
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R ++L R +K+ +LA I EE GK L ++ +V + V GE
Sbjct: 65 QRIELLERFAATLKSRADELARVIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGEK 124
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLW-MFPVAIACGNTHVIKPSERDPGAC 208
+A D P GV A P+NFP +P + P A+ GN V KPSE P
Sbjct: 125 SGPLA-DATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVP-ALLAGNCVVFKPSELTPKVA 182
Query: 209 MMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGA-KNG 267
+ + QAG P GV+N++ G + + H + + F GS + G ++ + +
Sbjct: 183 ELTLKAWIQAGLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQPQ 242
Query: 268 KRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV---EWLP 324
K + MG N V+ A+ + ++ +AF +AGQRC + + V + L
Sbjct: 243 KILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTC-ARRLLVPQGAWGDALLA 301
Query: 325 ELKKRAEALKVSAGNV-PGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
L + L+V + P +G VIS A E +L + + +GA LL G
Sbjct: 302 RLVAVSATLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDG 359
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 289 bits (742), Expect = 4e-93
Identities = 99/357 (27%), Positives = 170/357 (47%), Gaps = 14/357 (3%)
Query: 29 TTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSI 88
+ +G++VES+ + I + PA+ + +P + E+ A+ AK A + W I
Sbjct: 11 NANILRNGEWVESRTGERISISAPASGVALGSIPALSQEEVNDAIQGAKDAQKIWKIRPI 70
Query: 89 ITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGE 148
R +L+ ++++ + + E I E K A G+V R ++ + GE
Sbjct: 71 HERVDLLYAWADLLEERKEIIGELIMHEVAKPKKSAIGEVSRTADIIRHTADEALRLNGE 130
Query: 149 TL-----AGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLW-MFPVAIACGNTHVIKPSE 202
TL G + R PLGV I+PFN+P + + P A+ GNT V KP+
Sbjct: 131 TLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKIAP-ALVTGNTVVFKPAT 189
Query: 203 RDPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYE 261
+ + + +V+ L AG P G++ V+ G + + +HP I I+F G G+ I E
Sbjct: 190 QGSLSGIKMVEALADAGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISE 249
Query: 262 RGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
+ V +G K+ +++ DA+ T +Q+V AF +GQRC A+ +FV ++V
Sbjct: 250 KAKM--IPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIK-RVFVQDSVA 306
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ + +K+ E L V + D+ PVI ++ I LI ++ GATLL +
Sbjct: 307 DQLVANIKELVEQLTVGSP-EDDADITPVIDEKSAAFIQGLIDDALENGATLLSGNK 362
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 287 bits (738), Expect = 8e-93
Identities = 107/350 (30%), Positives = 175/350 (50%), Gaps = 10/350 (2%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
TK YI+G++VES + + I++ NPAT EV+ +V K A+++ AV +A Y + TS+
Sbjct: 8 TKQYINGEWVESNSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADDVYLEFRHTSVK 67
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPTIMQGE 148
RQ +L ++ + + + IT+E G L+ +E GL + E
Sbjct: 68 ERQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARDALDNYEFE 127
Query: 149 TLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGAC 208
G D + +GV+ ITP+NFP A A G+ V+KPSE P A
Sbjct: 128 ERRG-----DDLVVKEAIGVSGLITPWNFPTNQTSLKLAAAFAAGSPVVLKPSEETPFAA 182
Query: 209 MMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKNG 267
++L ++ + G P GV N+++G V N + +HP +R +SF GS G I E+ AK+
Sbjct: 183 VILAEIFDKVGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAAKDF 242
Query: 268 KRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPE 325
K+V +G K+ +++ D + G GQ C A T + V + +L E
Sbjct: 243 KKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAG-TRVLVPNKIKDAFLAE 301
Query: 326 LKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
LK++ ++V GT +GP+IS + +++ + I G++EGA L G
Sbjct: 302 LKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGG 351
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 287 bits (737), Expect = 1e-92
Identities = 92/357 (25%), Positives = 173/357 (48%), Gaps = 16/357 (4%)
Query: 29 TTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSI 88
K Y++G++ S+ I ++ PA+ + VP + E++ ASAKKA W S
Sbjct: 4 QYKNYVNGEWKLSENE--IKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSY 61
Query: 89 ITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGE 148
I R L ++ +I+ + +++ +++E K A +V+R +++ M+GE
Sbjct: 62 IERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGE 121
Query: 149 TL-----AGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLW-MFPVAIACGNTHVIKPSE 202
L +K R P+G+ I+PFN+P + + P A+ GN KP
Sbjct: 122 VLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAP-ALIAGNVIAFKPPT 180
Query: 203 RDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYE 261
+ + ++L + +AG P GV N I G + ++I +H + I+F GS G+ I +
Sbjct: 181 QGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGK 240
Query: 262 RGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
+ + +G K+ +++ DA+ T ++ AFG +GQRC A+ + V E+V
Sbjct: 241 MAGM--RPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVK-RVLVMESVA 297
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
E + +++++ AL + D+ P+I ++ + + LI D+GAT L + +
Sbjct: 298 DELVEKIREKVLALTIGNP-EDDADITPLIDTKSADYVEGLINDANDKGATALTEIK 353
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 282 bits (723), Expect = 2e-90
Identities = 109/355 (30%), Positives = 173/355 (48%), Gaps = 9/355 (2%)
Query: 27 IATTKLYIDGKFVESKATDWID-LHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSK 85
+ Y G+ ++SK + + PAT V+ ++ E++ AV SA+ AY WSK
Sbjct: 17 VTDDLNYWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWSK 76
Query: 86 TSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIM 145
+ I R +V+ II+ +A+ GKT+ +AE D+ Q +E + +
Sbjct: 77 MAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTL 136
Query: 146 QGETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
G+ + +Y R PLGV AGI +N+P MI W A+ACGN V KPS
Sbjct: 137 SGQH---IQLPGGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPALACGNAVVFKPSPM 193
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERG 263
P ++L ++ +AG P G+VNV+ G + + +C HP++ +SF GS GK + E
Sbjct: 194 TPVTGVILAEIFHEAGVPVGLVNVVQGGAETGSLLCHHPNVAKVSFTGSVPTGKKVMEMS 253
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
AK K V +G K+ +I D N + + A F GQ C T +FV + +
Sbjct: 254 AKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTN-GTRVFVQREIMPQ 312
Query: 322 WLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+L E+ KR +A+ V + T +G +IS +++L + EGA +L G
Sbjct: 313 FLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGE 367
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 281 bits (721), Expect = 4e-90
Identities = 105/360 (29%), Positives = 175/360 (48%), Gaps = 11/360 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
K YI+G + + + + +P+T E + + + + A+ +AKKA++TW TS
Sbjct: 26 RKFYINGLWDDPSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQTWKTTSPH 85
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA-EGDVLRGLQVVEQCCSIPTIMQGE 148
R + ++ I + +A+ I+ E G + A G + +
Sbjct: 86 ERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIKAYKEFSFQ 145
Query: 149 TLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG 206
+ + + +GV ITP+N+P A+ G T V+KPSE P
Sbjct: 146 EALI---EGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIPALLAGCTMVLKPSEIAPL 202
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAK 265
+ M+ ++L +A P GV N+I+G V +++ HPD+ ISF GS +AGK I + +
Sbjct: 203 SAMLFAEILDEAALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKNASN 262
Query: 266 NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWL 323
KRV +G K +I +DA+ + L + V F +GQ C A T + V +A+ + +
Sbjct: 263 TLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAP-TRMLVEQAIYDKAI 320
Query: 324 PELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVGIN 383
K AE +V G+ G +GPV+S + ++I LIQSG+DEGATL+ G L +G+
Sbjct: 321 KTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGME 380
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 280 bits (720), Expect = 5e-90
Identities = 87/353 (24%), Positives = 155/353 (43%), Gaps = 11/353 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTS 87
KL+I GK+ + +D I++ PAT E V +VP A A++++AVA+A+ A++ W T
Sbjct: 9 DKLFIGGKWTKPSTSDVIEVRCPATGEYVGKVPMAAAADVDAAVAAARAAFDNGPWPSTP 68
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPTIMQ 146
R V+ ++ + + E G+ E + + + +
Sbjct: 69 PHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAGAADKVT 128
Query: 147 GETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERD 204
S R P+GV I +N P + + A+ G T V+KP+
Sbjct: 129 WTE---TRTGSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIAPALLAGCTIVLKPAAET 185
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGA 264
P L ++ + G P GV++V+ G + + +PDI +F GS G+ + R A
Sbjct: 186 PLTANALAEVFAEVGLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRRAA 245
Query: 265 KNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EW 322
+ K +G K+ +I+ D + + + +V + AGQ C+ + I + E
Sbjct: 246 EMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTR-ILAPRSRYDEI 304
Query: 323 LPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
+ + AL V + P +GP+IS + + R+ I G++EGA L+ G
Sbjct: 305 VAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGG 357
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 280 bits (720), Expect = 7e-90
Identities = 88/357 (24%), Positives = 157/357 (43%), Gaps = 12/357 (3%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAY-ETWSK 85
+ Y+ G++ S I++ +P + +V + E+E + K +
Sbjct: 16 VPVYPSYLAGEWGGSGQE--IEVKSPIDLATIAKVISPSREEVERTLDVLFKRGRWSARD 73
Query: 86 TSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIM 145
R VL + +II+ N+ AE + GK + A G+V + + +
Sbjct: 74 MPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELDLKKI 133
Query: 146 QGETL----AGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 201
G+ + + + R PLGV A ITPFN+P + + GN V+KPS
Sbjct: 134 GGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPS 193
Query: 202 ERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYE 261
DP M V L AG PP + +++ I + A+SF GS + G+ + +
Sbjct: 194 ISDPLPAAMAVKALLDAGFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVK 253
Query: 262 RGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
G K+ +G + +++ DA+ +++ + AGQRC A+ + V
Sbjct: 254 VGGV--KQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKL-VLAERPVY 310
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ + E+ KR +L+V P D+GP+ISP A + +++ I+ V++G +L GR
Sbjct: 311 GKLVEEVAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGR 367
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 279 bits (716), Expect = 3e-89
Identities = 105/361 (29%), Positives = 171/361 (47%), Gaps = 12/361 (3%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET---- 82
I T +L+I+G + I + NPAT ++ +P AT +++ AVA+AK A
Sbjct: 5 IPTRQLFINGDWKAPVLNKRIPVINPATQNIIGDIPAATKEDVDVAVAAAKTALTRNKGA 64
Query: 83 -WSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSI 141
W+ S R + L + + +LA+ + + GK L +A D+ E +
Sbjct: 65 DWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFEYYADL 124
Query: 142 PTIMQGETLAGVAKDMD-IHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVI 198
+ A V+ MD S+ R P+GV ITP+N+P ++ W A+A G ++
Sbjct: 125 AEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMATWKVAPALAAGCAAIL 184
Query: 199 KPSERDPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGK 257
KPSE C+ L ++ + G PPGV+N++ G +A + HPD+ ++F GS G
Sbjct: 185 KPSELASLTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGS 244
Query: 258 YIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVG 317
I A+ K V +G K+ V+ D + + F GQ C A S + +
Sbjct: 245 KIMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSR-LILH 303
Query: 318 EAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
E++ E+L + K + +K+S G LGPV+S E+IL + + EGAT+L G
Sbjct: 304 ESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGG 363
Query: 376 R 376
Sbjct: 364 S 364
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 279 bits (715), Expect = 3e-89
Identities = 82/360 (22%), Positives = 154/360 (42%), Gaps = 9/360 (2%)
Query: 28 ATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTS 87
+ +G + I + PA NE + RV +A+ A+ E V A++A++ W+
Sbjct: 22 EENEGVYNGSWGGRGEV--ITTYCPANNEPIARVRQASVADYEETVKKAREAWKIWADIP 79
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQG 147
R +++ ++ + ++ ++ L ++ E GK L + G+V + + + + ++ G
Sbjct: 80 APKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEGVGEVQEYVDICDYAVGLSRMIGG 139
Query: 148 ETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG- 206
L + P+G+ IT FNFP + W +A+ CGN + K +
Sbjct: 140 PILPSERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAMICGNVCLWKGAPTTSLI 199
Query: 207 --ACMMLVD-MLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERG 263
A ++ +L P + ++ G D + + +SF GS Q GK +
Sbjct: 200 SVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMV 259
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
+ R +G N + DA+ S + + AA G AGQRC +F+ E++ E
Sbjct: 260 QERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARR-LFIHESIHDE 318
Query: 322 WLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
+ LKK ++V P GP+ + QA L ++ EG T++ G+ +
Sbjct: 319 VVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRP 378
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 276 bits (709), Expect = 5e-88
Identities = 110/354 (31%), Positives = 176/354 (49%), Gaps = 11/354 (3%)
Query: 29 TTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSI 88
+IDG +VE + PAT E++ ++ ATPA +E A+ASAK+A + W+ S
Sbjct: 14 KASHFIDGDYVEDNTGTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQKEWAAMSP 73
Query: 89 ITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA-EGDVLRGLQVVEQCCS-IPTIMQ 146
+ R ++L R +I++ L+ T + GK + + D G E P+ +
Sbjct: 74 MARGRILKRAADIMRERNDALSTLETLDTGKPIQETIVADPTSGADAFEFFGGIAPSALN 133
Query: 147 GETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERD 204
G+ + +Y RVPLGV GI +N+P I W A+ GN V KPSE
Sbjct: 134 GDYI----PLGGDFAYTKRVPLGVCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENT 189
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGA 264
P + + ++L +AG P G+ NVI G D + +HPD+ +S GS G+ + A
Sbjct: 190 PLGALKIAEILIEAGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAAAAA 249
Query: 265 KNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EW 322
+ K V +G K+ ++ DA+ + + + F ++GQ C T +FV + +
Sbjct: 250 GHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSN-GTRVFVQKKAKARF 308
Query: 323 LPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
L LK+R EA+ + T LGP++S +E++LS I+ G EGATL+ G
Sbjct: 309 LENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGG 362
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 275 bits (706), Expect = 1e-87
Identities = 104/355 (29%), Positives = 183/355 (51%), Gaps = 10/355 (2%)
Query: 29 TTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKT 86
+ + YIDG++VES + D+ NP EV+ V + T + E A+ +A++A+E+ WS+
Sbjct: 32 SQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFESGEWSQE 91
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQ 146
+ TR + + + + IK + + LA T + GKTL ++ D+ V +
Sbjct: 92 TAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFAGLADKDG 151
Query: 147 GETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERD 204
GE + + D S + P+GV ITP+N+P + W A+A G + V+KPSE
Sbjct: 152 GEMID--SPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMKPSEIT 209
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERG 263
P + + +++ + G P G +N+I GA + + + H ++ +SF G + GK+I +
Sbjct: 210 PLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMKNA 269
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
A N + +G KN +I DA+ ++Q + + AGQ C A S I V ++ +
Sbjct: 270 ANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSR-ILVQNSIKDK 328
Query: 322 WLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ L R + +K+ G T++GPVIS + + +I S + EGAT+ + G+
Sbjct: 329 FEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGK 383
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 274 bits (703), Expect = 3e-87
Identities = 105/354 (29%), Positives = 179/354 (50%), Gaps = 10/354 (2%)
Query: 29 TTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSI 88
+I G+FV S++ + +PATNEV+ + E++ A +A +A++ WS+T
Sbjct: 26 PALHFIAGEFVPSESGETFPSLDPATNEVLGVAARGGEREVDRAAKAAHEAFQRWSRTKA 85
Query: 89 ITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCS-IPTIMQG 147
R++ L R+ +I+ + +LA + G+ L V R + M+
Sbjct: 86 KERKRYLLRIAELIEKHADELAVMECLDAGQVLRIVRAQVARAAENFAFYAEYAEHAMED 145
Query: 148 ETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDP 205
T D D Y RVP G ITP+N P M+ W A+A GNT V+KP+E P
Sbjct: 146 RT---FPVDRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAPALAFGNTVVLKPAEWSP 202
Query: 206 GACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGA 264
L ++L +A PPGV N++ G +A + HP + ++ G + GK + A
Sbjct: 203 FTATKLAEILKEADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNAA 262
Query: 265 KNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EW 322
+ KR+ +G K+ ++ +DA+ L+ +V F G+RC A S + V E + ++
Sbjct: 263 DHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSR-LLVEEKIFEDF 321
Query: 323 LPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ ++ +RA A++V P T++GP+I P+ +R+L +++G EGA LL+ G
Sbjct: 322 VGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGE 375
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 272 bits (699), Expect = 2e-86
Identities = 102/355 (28%), Positives = 176/355 (49%), Gaps = 11/355 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYET--WSKT 86
++ +DGK V++ + ID +P EVV P+A+ ++ AVA+A+KA++ W +
Sbjct: 23 YQMLVDGKSVDAASGSTIDRVSPGHAGEVVGTWPEASADDVRKAVAAARKAFDAGPWPRM 82
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQ 146
S R +++F++ ++I A ++LA + E GK +A A G++ + ++
Sbjct: 83 SGAERSRLMFKVADLILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAAGQARALE 142
Query: 147 GETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERD 204
G+T + D R P+GV ITP+NFP +I P AI G T V+KPSE
Sbjct: 143 GQTHNNIGDDR--LGLVLREPVGVVGIITPWNFPFIIASERVPWAIGSGCTVVLKPSEFT 200
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERG 263
G + L ++ +AG P GV NV+ G A + + P++ ++F GS + G + E
Sbjct: 201 SGTSIRLAELAREAGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGEIA 260
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
A+ KRV +G K ++ +DA+ + + + AGQ C++ S + V E +
Sbjct: 261 ARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSR-LLVQEGIRDA 319
Query: 322 WLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ L + + T +G +IS E++ S + +G+ GA LLL G
Sbjct: 320 LMERLLDISRKVAFGDPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGE 374
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 270 bits (694), Expect = 3e-86
Identities = 99/352 (28%), Positives = 177/352 (50%), Gaps = 15/352 (4%)
Query: 32 LYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITR 91
++IDGK++ + +D+ NP + EV+ ++P + E + A+ +A+K E I R
Sbjct: 2 MFIDGKWINRE---DMDVINPYSLEVIKKIPALSREEAKEAIDTAEKYKEVMKNLPITKR 58
Query: 92 QQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGETLA 151
+L + IK ++LA+ + + GK + A +V R + + + E +
Sbjct: 59 YNILMNIAKQIKEKKEELAKILAIDAGKPIKQARVEVERSIGTFKLAAFYVKEHRDEVIP 118
Query: 152 GVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMML 211
+ D I + R P+G+ ITPFNFP + AIA GN V PS + P C+ L
Sbjct: 119 --SDDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPAIATGNVIVHHPSSKAPLVCIEL 176
Query: 212 VDMLTQA----GCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYIYERGAKN 266
++ A P GV N++ GA + V + I + + ISF GS + G+ I ++
Sbjct: 177 AKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAGF- 235
Query: 267 GKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLP 324
K++ +G N +++ DA+ + +N L+ +F AGQ C+++ I V E++ +++
Sbjct: 236 -KKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGM-ILVDESIADKFIE 293
Query: 325 ELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+A+ L V TD+GP+IS + E + +++ +DEG LLL G+
Sbjct: 294 MFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGK 345
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 269 bits (691), Expect = 9e-86
Identities = 97/357 (27%), Positives = 175/357 (49%), Gaps = 16/357 (4%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
K +I+GK+ ++ D+ NP V+T AT ++E A A+KA + W+K++
Sbjct: 7 NKSFINGKWTGGESGRTEDILNPYDQSVITTASLATGKQLEDAFDIAQKAQKEWAKSTTE 66
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQG-E 148
R+ VL + + + N + I E G T+ + ++ + + ++++ + + G +
Sbjct: 67 DRKAVLQKARGYLHENRDDIIMMIARETGGTIIKSTIELEQTIAILDEAMTYTGELGGVK 126
Query: 149 TLAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSERDP-G 206
+ + YR+PLGV + I+PFNFP + + P AIA GN+ V KP +
Sbjct: 127 EVPSDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAP-AIALGNSVVHKPDIQTAIS 185
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAK 265
++ AG P GV+NV+ + + + +P R ISF GS G++I E +
Sbjct: 186 GGTIIAKAFEHAGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIAGR 245
Query: 266 NGKRVQSNMGAKNHGVIMSDANRSNTLNQLV-GAAFGA---AGQRCMALSTVIFVGEAV- 320
KR+ +G N ++SDA+ +++ V A FG GQ CM ++ I V + V
Sbjct: 246 AFKRMALELGGNNPFAVLSDAD----VDRAVDAAIFGKFIHQGQICMIINR-IIVHQDVY 300
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
E++ + R + L P T +GP+I+ + E+ L +I+ +G L ++G+
Sbjct: 301 DEFVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGK 357
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 268 bits (686), Expect = 2e-84
Identities = 70/381 (18%), Positives = 128/381 (33%), Gaps = 32/381 (8%)
Query: 15 SHMKTFRQFIRHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVA 74
SHM K ++ G+++ I L +P T + RV +
Sbjct: 2 SHMT---------ELLKNHVAGQWIAG-TGAGITLTDPVTGVALVRVSSEGLDLARAFSF 51
Query: 75 SAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQV 134
+ + + R L + +++A T G T D+ D+ G+
Sbjct: 52 AREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRNDSAVDIDGGIFT 111
Query: 135 VE---------QCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWM 185
+ E+L+ H GV I FNFP+
Sbjct: 112 LSYYAKLGASLGEVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFNFPSWGLWEK 171
Query: 186 FPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGC-PPGVVNVIHGAHDAVNFICDHPDI 244
A+ G ++KP+ +V + AG PPG +++I G + +
Sbjct: 172 AAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICG--SSAGLLDQIRSF 229
Query: 245 RAISFVGSDQAGKYIYERGAKNGKRVQSNM--GAKNHGVIMSDANRSNT-----LNQLVG 297
+SF GS + A + + N+ + N ++ +DA + ++V
Sbjct: 230 DVVSFTGSADTAATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVR 289
Query: 298 AAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKE 355
+GQ+C A+ FV EA L LK + + V +G ++S + E
Sbjct: 290 EMTVKSGQKCTAIRRA-FVPEAALEPVLEALKAKLAKITVGNPRNDAVRMGSLVSREQYE 348
Query: 356 RILSLIQSGVDEGATLLLDGR 376
+L+ I + +E
Sbjct: 349 NVLAGIAALREEAVLAYDSSA 369
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 265 bits (679), Expect = 6e-84
Identities = 108/357 (30%), Positives = 180/357 (50%), Gaps = 11/357 (3%)
Query: 27 IATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKT 86
KLYI G++VE+ + + NPA EV+ +V +A+ ++E AV SA + + W+
Sbjct: 4 FEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAM 63
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPTIM 145
+ + R ++L R +I++ +LA T + GK LA+ D++ G V+E + +
Sbjct: 64 TAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAI 123
Query: 146 QGETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
+GE + Y R PLGV AGI +N+P I LW A+A GN + KPSE
Sbjct: 124 EGEQ---IPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEV 180
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + L ++ T+AG P GV NV+ G+ + ++ +HP I ISF G GK +
Sbjct: 181 TPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMAS 240
Query: 263 GAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
+ + K V +G K+ +I DA+ + V A F ++GQ C T +F+ +
Sbjct: 241 ASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTN-GTRVFIHRSQQ 299
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+ ++ +R + +++ T+ GP++S E +L I+SG + A LL G
Sbjct: 300 ARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGE 356
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 273 bits (699), Expect = 2e-82
Identities = 116/377 (30%), Positives = 171/377 (45%), Gaps = 23/377 (6%)
Query: 10 LQRTPSHMKTFRQFIRHIATTKLYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAE 68
P H+ R + T L+I+GK V + D I NP +EV+ ++ +A E
Sbjct: 514 RAAFPKHIAQVRTQLGK--TYPLFINGKEVRT--NDLIPTVNPNKPSEVLGQICQAGTTE 569
Query: 69 MESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDV 128
+ A+A+AK A+ W T TR + L + + + +L+ E GK A DV
Sbjct: 570 VGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQAYADV 629
Query: 129 LRGLQVVE----QCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLW 184
+ +E + + G A H + P GV A I P+NFP I +
Sbjct: 630 TEAIDFLEYYAREMIRL----GQPQRVGHAPGELNHYFYEPKGVAAVIAPWNFPLAISMG 685
Query: 185 MFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPD 243
M AI GN V KPS LV++ +AG P GV N G + +++ DHPD
Sbjct: 686 MASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDYLVDHPD 745
Query: 244 IRAISFVGSDQAGKYIYERGAK------NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVG 297
I I+F GS + G I ER AK N K++ S MG KN +I DA+ + ++
Sbjct: 746 ISLIAFTGSMETGLRIIERAAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLY 805
Query: 298 AAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKE 355
+AFG GQ+C A S + V +AV +++ L A+A KV P +G V +A +
Sbjct: 806 SAFGFQGQKCSACS-RVIVLDAVYDKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMK 864
Query: 356 RILSLIQSGVDEGATLL 372
I + G EG L
Sbjct: 865 SIKEYAEIGKREGHVLY 881
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 257 bits (659), Expect = 6e-81
Identities = 94/354 (26%), Positives = 163/354 (46%), Gaps = 12/354 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
KL I+G+ V + + ++NPAT +V+ + +A+ ++++AV +A A+ W +T+
Sbjct: 24 HKLLINGELVSGEG-EKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPK 82
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLRGLQVVEQCCSIPTIMQGE 148
R + L +L ++I+ N + AE + GK L A ++ + V + G
Sbjct: 83 VRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 142
Query: 149 TLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPG 206
+ S R PLGV A I P+N+P M+ W A+A GN V+KPSE P
Sbjct: 143 AAGEYLEGH--TSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPL 200
Query: 207 ACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYERGAK 265
+ L ++ P GVVN++ G + + HP +R +S GS G++I A
Sbjct: 201 TALKLAELAKDI-FPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAS 259
Query: 266 NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWL 323
+ KR +G K ++ DA+ + + + AGQ C A + I+ + + +
Sbjct: 260 SIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTA-ACRIYAQKGIYDTLV 318
Query: 324 PELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEG-ATLLLDGR 376
+L LK A + T+LGP+ S ER+ ++ G ++ G
Sbjct: 319 EKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGE 372
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 256 bits (656), Expect = 2e-80
Identities = 110/357 (30%), Positives = 183/357 (51%), Gaps = 14/357 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYE---TWSKT 86
TK++I+ ++ S + + NPAT E + V + +++ AV +A++A++ W
Sbjct: 21 TKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTM 80
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA-EGDVLRGLQVVEQCCSIPTIM 145
R ++L +L ++I+ + LA GK ++A D+ ++ + C +
Sbjct: 81 DASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKI 140
Query: 146 QGETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
QG T + D + +Y P+GV I P+NFP ++ LW A++CGNT V+KP+E+
Sbjct: 141 QGRT---IPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQ 197
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + + ++ +AG PPGVVN++ G A I H D+ ++F GS + GK I E
Sbjct: 198 TPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEA 257
Query: 263 GAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
K N KRV +G K+ ++ +DA+ N + F GQ C+A S +FV E++
Sbjct: 258 AGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASR-LFVEESIY 316
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
E++ +RA+ + PG GP I + E+IL LI+SG EGA L G
Sbjct: 317 DEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGG 373
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 255 bits (655), Expect = 3e-80
Identities = 84/370 (22%), Positives = 159/370 (42%), Gaps = 11/370 (2%)
Query: 12 RTPSHMKTFRQFIRHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMES 71
+ + T + + + T+L I +F + NP T + + +A+ A++++
Sbjct: 8 SSGVDLGTENLYFQSMMDTQLLIGSRFEAGTE-AEEHILNPRTGAGIIDLAEASHAQIDA 66
Query: 72 AVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEG-DVLR 130
AV +A++A+ WS+T+ R L ++ + I+ + A GK + + ++
Sbjct: 67 AVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPA 126
Query: 131 GLQVVEQCCSIPTIMQGETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPV 188
+ + S R P+G+ I P+N+P M+ W
Sbjct: 127 IIDCWRFFAGAVRNLHAPAAGEYLPGH--TSMIRRDPIGIVGSIAPWNYPLMMMAWKLAP 184
Query: 189 AIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAI 247
AI GNT V KPSE+ P + L ++ P GVVNVI G N + +HP + +
Sbjct: 185 AIGGGNTVVFKPSEQTPLTALKLARLIADIL-PEGVVNVITGRGETVGNALINHPKVGMV 243
Query: 248 SFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRC 307
S G GK + AK KR +G K ++ DA+ +N + + AGQ C
Sbjct: 244 SITGDIATGKKVLAAAAKTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDC 303
Query: 308 MALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGV 365
A + I+ + + + +L ++ + + ++GP+IS + ++R+ S ++
Sbjct: 304 TA-ACRIYAEAGIYEKLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVERAA 362
Query: 366 DEGATLLLDG 375
D+ + G
Sbjct: 363 DQKHIEITTG 372
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 255 bits (653), Expect = 8e-80
Identities = 99/357 (27%), Positives = 183/357 (51%), Gaps = 11/357 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYET--WSKTS 87
+L+I G+FV+++ + + NP V+ +V A ++++ AVA+AK+A+E W K +
Sbjct: 37 YQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKIN 96
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA-EGDVLRGLQVVEQCCSIPTIMQ 146
R ++L+RL ++++ + ++LA + G A + V +Q +Q
Sbjct: 97 ARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQ 156
Query: 147 GETL-AGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
G T+ A+ + + P+GV + P+N+P M+ W +A GNT VIKP++
Sbjct: 157 GATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQV 216
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + ++ +AG P GVVN++ G+ + DHPD+R I F GS + GK+I +
Sbjct: 217 TPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKS 276
Query: 263 GAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
A N K+V +G K+ +I +D + + + + + F G+ C+A +FV E++
Sbjct: 277 CALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGR-LFVEESIH 335
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
+++ ++ + E +K+ T+ GP +++ Q GV EGATL+ G
Sbjct: 336 NQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 253 bits (648), Expect = 3e-79
Identities = 103/357 (28%), Positives = 173/357 (48%), Gaps = 14/357 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYE---TWSKT 86
+++I+ ++ ++ + NP+T EV+ +V + +++ AV +A+ A++ W +
Sbjct: 20 NQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRM 79
Query: 87 SIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADA-EGDVLRGLQVVEQCCSIPTIM 145
R ++L RL ++I+ + LA T + GK + D+ L+ +
Sbjct: 80 DASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKY 139
Query: 146 QGETLAGVAKDMDIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSER 203
G+T + D D SY P+GV I P+NFP ++ W A+A GN V+K +E+
Sbjct: 140 HGKT---IPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQ 196
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + + +++ +AG PPGVVN++ G A I H D+ ++F GS + G+ I
Sbjct: 197 TPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVA 256
Query: 263 GAK-NGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV- 320
N KRV +G K+ +IMSDA+ + Q A F GQ A S FV E +
Sbjct: 257 AGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSR-TFVQEDIY 315
Query: 321 -EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
E++ RA++ V T+ GP + ++IL I +G EGA LL G
Sbjct: 316 DEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 249 bits (639), Expect = 3e-78
Identities = 100/361 (27%), Positives = 170/361 (47%), Gaps = 15/361 (4%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
+YIDG+FV + WID+ NPAT V++R+P + A+ +A++A W I
Sbjct: 7 HPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEWEALPAI 66
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVV----EQCCSIPTIM 145
R L ++ I+ +++ I EE GK AE +V + E
Sbjct: 67 ERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRY---- 122
Query: 146 QGETLAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSERD 204
+GE + +I ++ LGVT GI P+NFP +I M P A+ GNT VIKPSE
Sbjct: 123 EGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAP-ALLTGNTIVIKPSEFT 181
Query: 205 PGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERG 263
P + ++ + G P GV N++ G + +P + +S GS AG+ I
Sbjct: 182 PNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATA 241
Query: 264 AKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
AKN +V +G K ++M DA+ + +V + +GQ C + ++V + + +
Sbjct: 242 AKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNC-AERVYVQKGIYDQ 300
Query: 322 WLPELKKRAEALKVSAG-NVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKV 380
++ L + +A++ +GP+I+ A ER+ + V+EGA + G+ ++
Sbjct: 301 FVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEG 360
Query: 381 G 381
Sbjct: 361 K 361
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 238 bits (610), Expect = 1e-73
Identities = 106/356 (29%), Positives = 175/356 (49%), Gaps = 16/356 (4%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
+I G++V S +D ID+ +P+T +V+ +P A+ E+A+ A+ A + W+K +
Sbjct: 13 KVNFIGGQYVPSNESDTIDILSPSTGKVIGEIPAGCKADAENALEVAQAAQKAWAKLTAR 72
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
TRQ +L N I+ N LA + EQGK L+ AE +V ++ C ++G+
Sbjct: 73 TRQNMLRTFANKIRENKHILAPMLVAEQGKLLSVAEMEVDVTATFIDYGCDNALTIEGDI 132
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPSER 203
L +D I+ ++VP GV GIT +NFP A+ P A+ GNT V+KP++
Sbjct: 133 LPSDNQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGP------ALITGNTMVLKPTQE 186
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P A L + +AG P GV+NVI+G +C+ P + I+ GS AGK IY+
Sbjct: 187 TPLATTELGRIAKEAGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKT 246
Query: 263 GAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV-- 320
A+ V +G K V+M DA+ + F GQ C ++V +V
Sbjct: 247 SAEYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTC-VERLYVHASVYD 305
Query: 321 EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
E++ + + LKV + +GP + + + I ++ + +GAT+ G+
Sbjct: 306 EFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGK 361
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 232 bits (593), Expect = 3e-71
Identities = 104/365 (28%), Positives = 186/365 (50%), Gaps = 24/365 (6%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
+ I+G+++++ + ID+ NPA + + VPK E +A+ +A +A W +
Sbjct: 10 QQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAK 69
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R +L N++ + LA +T EQGK LA+A+G++ +E + G+T
Sbjct: 70 ERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDT 129
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPSER 203
+ G D + + P+GVTA ITP+NFP AMI P A+A G T V+KP+ +
Sbjct: 130 IPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGP------ALAAGCTMVLKPASQ 183
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + + L ++ +AG P GV NV+ G A N + +P +R +SF GS + G+ + E+
Sbjct: 184 TPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQ 243
Query: 263 GAKNGKRVQSNMGAKNHG----VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE 318
AK+ K+V +G G ++ DA+ + + + F AGQ C+ + ++V +
Sbjct: 244 CAKDIKKVSLELG----GNAPFIVFDDADLDKAVEGALASKFRNAGQTCVC-ANRLYVQD 298
Query: 319 AV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
V + +L++ L + G G +GP+I +A ++ I +++GA ++ G+
Sbjct: 299 GVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGK 358
Query: 377 NLKVG 381
+ G
Sbjct: 359 AHERG 363
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 232 bits (593), Expect = 5e-71
Identities = 101/362 (27%), Positives = 184/362 (50%), Gaps = 24/362 (6%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
++ ++G+++++ I + NPA V+ VP + A ++ A+ ++ KA W+ +
Sbjct: 33 SQCLVNGRWIDAADGTTIKVTNPADGSVIGTVPSLSVATIKEAIDASAKALSGWAAKTAK 92
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R +L + ++I AN +A +T EQGK LA+A G+VL +E + G+T
Sbjct: 93 ERAGILRKWFDLIIANADDIALIMTSEQGKPLAEARGEVLYAASFIEWFAEEAKRVYGDT 152
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPSER 203
+ + R P+GVTA ITP+NFP AMI P A+A G T +++P++
Sbjct: 153 IPAPQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAP------ALAAGCTMIVRPADL 206
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
P + L + +AG P GV+ ++ G A + + + +R +SF GS + G+ + +
Sbjct: 207 TPLTALALGVLAEKAGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQ 266
Query: 263 GAKNGKRVQSNMGAKNHG----VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE 318
A KR+ +G G ++ DA+ ++ + + + AGQ C+ + I+V
Sbjct: 267 CAPTIKRISLELG----GNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVC-ANRIYVQR 321
Query: 319 AV--EWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
V ++ +L + + LKV G PG +GP+I +A ++ + I+ V +GA L+ G+
Sbjct: 322 GVYDKFAEKLAAKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGK 381
Query: 377 NL 378
L
Sbjct: 382 EL 383
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 231 bits (592), Expect = 5e-71
Identities = 62/358 (17%), Positives = 117/358 (32%), Gaps = 29/358 (8%)
Query: 39 VESKATDWIDLHNPATNEVV-TRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFR 97
+ + + N T E + P T E+ A +A K + + + R +L
Sbjct: 1 MNPQTDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRT 60
Query: 98 LQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQ--------VVEQCCSIPTIMQGET 149
+ + ++A + E G++ R V +
Sbjct: 61 IASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADVVNSGSYHQAILDTPNP 120
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPSERDPGA 207
DI ++ LG A NFP A+A G ++K PG
Sbjct: 121 TRAPLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAHPGT 180
Query: 208 CMMLVDMLTQA----GCPPGVVNVIHGA-HDAVNFICDHPDIRAISFVGSDQAGKYIYER 262
++ + + QA P + ++ G + HP+I+A+ F GS G+ ++
Sbjct: 181 SQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFNL 240
Query: 263 GAKNGKRVQSN--MGAKNHGVIMSDA--NRSNTLNQLVGAAFGAAGQRCMALSTVIFV-G 317
+ + + +GA N I A +++ +Q V + GQ C V +
Sbjct: 241 AHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNT 300
Query: 318 EAVEWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDG 375
+ A + P T L P I + ++ + G D+G +
Sbjct: 301 PETQAF-----IETAQSLIRQQSPSTLLTPGIRDSYQSQV---VSRGSDDGIDVTFSQ 350
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 231 bits (591), Expect = 6e-71
Identities = 105/360 (29%), Positives = 178/360 (49%), Gaps = 14/360 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
+ YI G++ + + ++ +PAT E + VPK AE A+ +A+ A+ W +
Sbjct: 13 HQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAK 72
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R +L R +++ AN LA +T EQGK LA+A+G++ +E + G+T
Sbjct: 73 ERAAILRRWFDLVIANSDDLALILTTEQGKPLAEAKGEIAYAASFIEWFAEEGKRVAGDT 132
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSERDPGAC 208
L + I + P+GV A ITP+NFP AMI + P A+A G V+KP+E P +
Sbjct: 133 LPTPDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGP-ALAAGCPIVVKPAESTPFSA 191
Query: 209 MMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNG 267
+ + + +AG P GV++V+ G I +P +R +SF GS G+ + + A
Sbjct: 192 LAMAFLAERAGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSAPTV 251
Query: 268 KRVQSNMGAKNHG----VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
K++ +G G ++ DA+ + + + + GQ C+ + FV E V
Sbjct: 252 KKLTLELG----GNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVC-TNRFFVHERVYDA 306
Query: 322 WLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
+ +L LKV G G LGP+I+ A +++ S I + +GA+L+ G+ +G
Sbjct: 307 FADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALG 366
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 229 bits (587), Expect = 3e-70
Identities = 96/360 (26%), Positives = 175/360 (48%), Gaps = 14/360 (3%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
YI G++ +S D++NPAT V+ +VP ++ +AV + + A + I
Sbjct: 12 LTGYIGGRWKDSAGGATFDVYNPATGSVIAKVPSMPEEDVVAAVEAGQSALRLTNPWPIE 71
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
TR++ L +++ +K N +++ + E GK +A+G+V + C + + T
Sbjct: 72 TRRKWLEDIRDGLKENREEIGRILCMEHGKPWKEAQGEVDYAAGFFDYCAKHISALDSHT 131
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSERDPGAC 208
+ KD + P+GVT I P+NFP MI + A+A G VIKP+ P
Sbjct: 132 IPEKPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSA-ALAAGCPSVIKPASETPLTM 190
Query: 209 MMLVDMLTQAGCPPGVVNVIHG-AHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNG 267
+ ++ + P G+VN++ G A +C+H D+ +SF GS + G+ + A+
Sbjct: 191 IAFFSVMDKLDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDTAEQV 250
Query: 268 KRVQSNMGAKNHG----VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--E 321
K++ +G G ++ DA+ + L+ F GQ C+ + IFV E V
Sbjct: 251 KKLALELG----GNAPFIVFDDADLEAAADNLIANKFRGGGQTCVC-ANRIFVHEKVADA 305
Query: 322 WLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLKVG 381
+ +L +R + V G G D+GP+I+ Q +++ +Q +D+GA+L+ + ++G
Sbjct: 306 FGQKLAERVNKMTVGDGMNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELG 365
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 238 bits (609), Expect = 5e-70
Identities = 84/340 (24%), Positives = 137/340 (40%), Gaps = 5/340 (1%)
Query: 38 FVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFR 97
F A D + A + + ATP + +AVA+A+ + WS+T R L +
Sbjct: 521 FGARTALDQLLTDVKAETGDLKPIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQ 580
Query: 98 LQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQ-CCSIPTIMQGETLAGVAKD 156
+++++ + E GKTL DA ++ + ET
Sbjct: 581 AAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTG 640
Query: 157 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLT 216
GV I+P+NFP I L A+ GN+ V KP+E+ P V +L
Sbjct: 641 ESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLH 700
Query: 217 QAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNG---KRVQSN 273
+AG P + ++ G + HPDI + F GS + + I A + +
Sbjct: 701 EAGIPKSALYLVTGDGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAE 760
Query: 274 MGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGE-AVEWLPELKKRAEA 332
G N + + A + +V +AF +AGQRC AL + + A + + A
Sbjct: 761 TGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARE 820
Query: 333 LKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLL 372
LK+ + T +GPVI +AK+R+ + I E
Sbjct: 821 LKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHF 860
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 224 bits (574), Expect = 2e-68
Identities = 107/369 (28%), Positives = 173/369 (46%), Gaps = 30/369 (8%)
Query: 30 TKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSII 89
T ++ G+++ + AT + +PA+ + V E +AV +A +A+ W + S
Sbjct: 13 TDSFVGGRWLPAAAT--FPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAK 70
Query: 90 TRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSIPTIMQGET 149
R +L + N++ N LA IT E GK L +A G++L +E + G+
Sbjct: 71 ERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDI 130
Query: 150 LAGVAKDMDIHSYRVPLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPSER 203
+ AKD + P+GV A ITP+NFP AMI A+A G T V+KP+E
Sbjct: 131 IHTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGA------ALAAGCTVVVKPAED 184
Query: 204 DPGACMMLVDMLTQAGCPPGVVNVIHG----AHDAVNFICDHPDIRAISFVGSDQAGKYI 259
P + + L ++ +QAG P GV NVI A + IC P + ISF GS GK +
Sbjct: 185 TPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKIL 244
Query: 260 YERGAKNGKRVQSNMGAKNHG----VIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIF 315
A + KRV +G G ++ AN + + + F GQ C+ S
Sbjct: 245 LHHAANSVKRVSMELG----GLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVC-SNQFL 299
Query: 316 VGEAV--EWLPELKKRAEA-LKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLL 372
V + ++ + + L+V G GT GP+I+ +A E++ + V +GAT++
Sbjct: 300 VQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVV 359
Query: 373 LDGRNLKVG 381
G+ ++G
Sbjct: 360 TGGKRHQLG 368
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 219 bits (561), Expect = 1e-66
Identities = 85/345 (24%), Positives = 150/345 (43%), Gaps = 30/345 (8%)
Query: 47 IDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANM 106
NP TNE T +++ A+ A Y+ W +R ++L + N +K +
Sbjct: 6 YQSVNPYTNEAFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHE 65
Query: 107 KQLAENITEEQGKTLADAEGDVLRGLQVVEQCCSI--------PTIMQGETLAGVAKDMD 158
+LA+ +T E GK L++++ + VE C SI P +++ L +
Sbjct: 66 DELAKMMTLEMGKLLSESKEE-------VELCVSICNYYADHGPEMLKPTKLNSDLGNAY 118
Query: 159 IHSYRVPLGVTAGITPFNFPAMIPLWMF-----PVAIACGNTHVIKPSERDPGACMMLVD 213
+ GV P+NF PL+ P GN ++K + PG+ +
Sbjct: 119 YL--KQSTGVIMACEPWNF----PLYQVIRVFAP-NFIVGNPILLKHAHNVPGSAALTAK 171
Query: 214 MLTQAGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSN 273
++ +AG P G + ++ ++D + I P I+ ++ GS++ G + E KN K+
Sbjct: 172 IIKRAGAPEGSLINLYPSYDQLADIIADPRIQGVALTGSERGGSAVAEAAGKNLKKSTME 231
Query: 274 MGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAE 331
+G + +++ DA+ N L A GQ C + S I V ++ E L ELK
Sbjct: 232 LGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTS-SKRIIVEKSRYDEVLHELKNVFS 290
Query: 332 ALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
LK T L P+ S +AKE++ + ++ +D GA +
Sbjct: 291 NLKAGDPLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYP 335
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 218 bits (559), Expect = 2e-66
Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 30/341 (8%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
NPAT + + +P A E+E A++ A ++ W TS+ R Q L + ++A+ +++A
Sbjct: 13 NPATGQTLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMA 72
Query: 111 ENITEEQGKTLADAEGDVLRGLQVVEQCCSI--------PTIMQGETLAGVAKDMDIHSY 162
+ IT E GK + A + V + ++ P ++ E + I
Sbjct: 73 QCITREMGKPIKQARAE-------VTKSAALCDWYAEHGPAMLNPEPTLVENQQAVIE-- 123
Query: 163 RVPLGVTAGITPFNFPAMIPLWMF-----PVAIACGNTHVIKPSERDPGACMMLVDMLTQ 217
PLGV I P+NF PLW P + GN++++K + G M+ +L +
Sbjct: 124 YRPLGVILAIMPWNF----PLWQVLRGAVP-ILLAGNSYLLKHAPNVTGCAQMIARILAE 178
Query: 218 AGCPPGVVNVIHGAHDAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAK 277
AG P GV ++ ++ V+ + + P I A++ GS +AG I + K+ +G
Sbjct: 179 AGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGS 238
Query: 278 NHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKV 335
+ ++++DA+ + V + GQ C A + V E + + A ALK+
Sbjct: 239 DPFIVLNDADLELAVKAAVAGRYQNTGQVCAA-AKRFIVEEGIAQAFTDRFVAAAAALKM 297
Query: 336 SAGNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGR 376
V DLGP+ ++ + +Q+ V EGA LLL G
Sbjct: 298 GDPLVEENDLGPMARFDLRDELHQQVQASVAEGARLLLGGE 338
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 205 bits (524), Expect = 2e-60
Identities = 80/365 (21%), Positives = 140/365 (38%), Gaps = 33/365 (9%)
Query: 32 LYIDGKFVESKATDWIDLHNPA-TNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIIT 90
+ + V + D +P V + A A + A+ +A A + W +
Sbjct: 66 CVVGDEEVWTS--DIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMAD 123
Query: 91 RQQVLFRLQNIIKA-NMKQLAENITEEQGKTLADAEGDVLRGL---------QVVEQCCS 140
R QV + +++ ++ QGKT+ AE D L VE
Sbjct: 124 RAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGE 183
Query: 141 IPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 200
P + T + YR G A I+PFNF A I + GN + KP
Sbjct: 184 QPISVPPST--------NHTVYRGLEGFVAAISPFNFTA-IGGNLAGAPALMGNVVLWKP 234
Query: 201 SERDPGACMMLVDMLTQAGCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGSDQAGKYI 259
S+ A + +L +AG PP ++ + + + + I+F GS K++
Sbjct: 235 SDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHL 294
Query: 260 YERGAKNG------KRVQSNMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTV 313
+ + A+N R+ G KN + S A+ + ++ + +AF GQ+C A S
Sbjct: 295 WRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACS-R 353
Query: 314 IFVGEAV--EWLPELKKRAEALKV-SAGNVPGTDLGPVISPQAKERILSLIQSGVDEGAT 370
++V +++ + L + +KV GT VI +A RI ++ +
Sbjct: 354 LYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSL 413
Query: 371 LLLDG 375
+L G
Sbjct: 414 SILAG 418
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 203 bits (518), Expect = 6e-60
Identities = 69/349 (19%), Positives = 125/349 (35%), Gaps = 30/349 (8%)
Query: 29 TTKLYIDGKFVESKAT-DWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTS 87
K + G++++ T H PA + V T + A +A++A+ T+ +S
Sbjct: 29 KGKHLVAGEWLDGAGTFASAPAHGPAHDFAV-----GTVELVNRACEAAEEAFWTYGYSS 83
Query: 88 IITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQ--------VVEQCC 139
R L + + I+A + + E ++E G A G+ R + +
Sbjct: 84 RKERAAFLRAIADEIEARAEAITEIGSQETGLPEARLNGERGRTTGQLRLFADHIEKGDY 143
Query: 140 SIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPL--WMFPVAIACGNTHV 197
+ A +I + P+G A NFP A+A G V
Sbjct: 144 LDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVV 203
Query: 198 IKPSERDPGACMMLVDMLTQA----GCPPGVVNVIHGAHDAV-NFICDHPDIRAISFVGS 252
+K PG ++ + + A G PGV ++I G V + + HP I+A+ F GS
Sbjct: 204 VKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGS 263
Query: 253 DQAGKYIYERGAKNGKRVQSN--MGAKNHGVIMSDA--NRSNTL-NQLVGAAFGAAGQRC 307
G+ +++ A + + +G+ N ++ +A R+ TL G+ AGQ C
Sbjct: 264 LAGGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFC 323
Query: 308 MALSTVIFVGEAVEW---LPELKKRAEALKVSAGNVPGTDLGPVISPQA 353
+ V E + + + G
Sbjct: 324 TN-PGIAVVIEGADADRFTTAAVEALAKVAPQTMLTDGIAKAYRDGQAR 371
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 183 bits (466), Expect = 6e-53
Identities = 66/353 (18%), Positives = 129/353 (36%), Gaps = 30/353 (8%)
Query: 64 ATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLAD 123
+ E+ + + SA KA + + S ++ + + ++LA+ EE G +
Sbjct: 9 RSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQ 68
Query: 124 AEGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMIPL 183
+ + + M+ + + + VPLGV AG+ P P +
Sbjct: 69 DKVIKNVF--ASKHVYNYIKDMKTIGMLKEDNEKKVMEVAVPLGVVAGLIPSTNPTSTVI 126
Query: 184 WMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQ----AGCPPGVVNVIHGA-HDAVNFI 238
+ ++I GN+ V P A + V ++++ AGCP G ++ + + +
Sbjct: 127 YKTLISIKAGNSIVFSPHPNALKAILETVRIISEAAEKAGCPKGAISCMTVPTIQGTDQL 186
Query: 239 CDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGA 298
H D I G K Y +G I AN + ++ +
Sbjct: 187 MKHKDTAVILATGGSAMVKAAY----SSGTPAIGVGPGNGPAFIERSANIPRAVKHILDS 242
Query: 299 AFGAAGQRCMALSTVIFVGEAV--EWLPELKKR-------AEALKVSAG-NVPGTDLGPV 348
G C + +V+ V + E +K+ AEA+++ P + P
Sbjct: 243 KTFDNGTICASEQSVV-VERVNKEAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNPA 301
Query: 349 ISPQAKERILSLIQSGVDEGATLLLDGRNLKVGINVPI------PVPLSMFSF 395
I ++ + I +L V A +L+ KVG +P P+ L+ ++
Sbjct: 302 IVGKSVQHIANLAGLTVPADARVLIAEET-KVGAKIPYSREKLAPI-LAFYTA 352
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 173 bits (440), Expect = 3e-49
Identities = 57/335 (17%), Positives = 105/335 (31%), Gaps = 32/335 (9%)
Query: 61 VPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKT 120
+P AE+++ +A KKA E ++ S ++ LA+ EE G
Sbjct: 1 MPVTNMAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMG 60
Query: 121 LADAEGDVLRGLQVVEQCCSIPTIMQGETLAGVA---KDMDIHSYRVPLGVTAGITPFNF 177
+ + + I + E G+ ++ + P+G+ GI P
Sbjct: 61 IVEDKVIKNHFA-----SEFIYNKYKDEQTCGILEEDDNLGTMTIAEPVGIICGIVPTTN 115
Query: 178 PAMIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQA----GCPPGVVNVIHGA-H 232
P ++ +++ N + P R + ++ A G P ++ I
Sbjct: 116 PTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSV 175
Query: 233 DAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTL 292
+ N + H DI I G K Y +GK VI A+ +
Sbjct: 176 ELSNALMKHDDIALILATGGPGMVKAAY----SSGKPAIGVGAGNVPVVIDETADIKRAV 231
Query: 293 NQLVGAAFGAAGQRCMALSTVIFVGEAV--EWLPELKKRAEALKVSAGNVPGTDLGPVIS 350
++ + G C + VI V + V E + +I
Sbjct: 232 ASVLMSKTFDNGVVCASEQAVI-VVDEVYDEVKERFASHKAHVLSKTDADKVRK-VLLID 289
Query: 351 PQAKERILSLIQSGVDEGATLLLDGRNLKVGINVP 385
+I+ + + E A G+ VP
Sbjct: 290 GALNAKIVGQPATAIAEMA-----------GVKVP 313
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 84.1 bits (209), Expect = 9e-18
Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 29/320 (9%)
Query: 61 VPKATP-AEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGK 119
VP+ + +++ AV A+ A+ + + R Q L LQ +I+ ++L + + K
Sbjct: 11 VPRGSHMSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHK 70
Query: 120 TLADAE----GDVLRGLQVVEQCCSIPTIMQGETLAG--VAKDMDIHSYRVPLGVTAGIT 173
+A VL ++ + Q +P E + + +++ + PLGV I
Sbjct: 71 NEWNAYYEEVVYVLEEIEYMIQK--LPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIG 128
Query: 174 PFNFPAMIPLWMFPV--AIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIHGA 231
+N+P L + P+ AIA GN V+KPSE +L ++ Q + VI+G
Sbjct: 129 TWNYPFN--LTIQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQY-LDKDLYPVINGG 185
Query: 232 HDAVNFICDHP-DIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSN 290
+ D I + GS GK I AK+ V +G K+ + + +
Sbjct: 186 VPETTELLKERFDH--ILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDV 243
Query: 291 TLNQLVGAAFGAAGQRCMALSTV--IFVGEAV--EWLPELKKRAEALKVSAGNVPGT--D 344
++ F +GQ C+A I ++ + + +LKK +LK G D
Sbjct: 244 ACRRIAWGKFMNSGQTCVA---PDYILCDPSIQNQIVEKLKK---SLKEFYGEDAKKSRD 297
Query: 345 LGPVISPQAKERILSLIQSG 364
G +IS + +R++ LI+
Sbjct: 298 YGRIISARHFQRVMGLIEGQ 317
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 78.2 bits (193), Expect = 9e-16
Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 38/338 (11%)
Query: 51 NPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLA 110
+ ++ + +PA+++S ++ K + T + + R+Q L RL+ + N + L
Sbjct: 12 SGHIDDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALY 71
Query: 111 ENITEEQGKTLADAE----GDVLRGLQVV---------EQCCSIPTIMQGETLAGVAKDM 157
+ E+ GK + G VL + P I+
Sbjct: 72 SALAEDLGKPKDVVDLAEIGAVLHEIDFALAHLDEWVAPVSVPSPDIIAP---------S 122
Query: 158 DIHSYRVPLGVTAGITPFNFP---AMIPLWMFPV-AIACGNTHVIKPSERDPGACMMLVD 213
+ + + P GVT I PFN+P + PL + AI GNT +IKPSE P ++
Sbjct: 123 ECYVVQEPYGVTYIIGPFNYPVNLTLTPL----IGAIIGGNTCIIKPSETTPETSAVIEK 178
Query: 214 MLTQAGCPPGVVNVIHGAHDAVNFICDHP-DIRAISFVGSDQAGKYIYERGAKNGKRVQS 272
++ +A P V VI G D + + P D I F GS GK + + AK+ V
Sbjct: 179 IIAEA-FAPEYVAVIQGGRDENSHLLSLPFDF--IFFTGSPNVGKVVMQAAAKHLTPVVL 235
Query: 273 NMGAKNHGVIMSDANRSNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPELKKRAEA 332
+G K +++ DA+ T+NQL+ F +GQ +A + + L L++ E
Sbjct: 236 ELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDAL--LERLVER 293
Query: 333 LKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGAT 370
+K + G +++ + +R++SL+++ +
Sbjct: 294 VKTELPEIN--STGKLVTERQVQRLVSLLEATQGQVLV 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 3e-09
Identities = 53/345 (15%), Positives = 102/345 (29%), Gaps = 119/345 (34%)
Query: 74 ASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQ 133
++K A + W++ + F + +I+ N L + E+GK + +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA------ 1690
Query: 134 VVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLGVTAGITPFNF--------------PA 179
M ET+ D + + ++ + T + F PA
Sbjct: 1691 -----------MIFETIV----DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 180 MIPLWMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQAGCPPGVVNVIH--G-----AH 232
+ + A +K P AG H G A
Sbjct: 1736 -----LTLMEKAA--FEDLKSKGLIPADATF-------AG---------HSLGEYAALAS 1772
Query: 233 DAVNFICDHPDIRAISFVGSDQAGKYIYERGAKNGKRV-QSNMGAKNHGVIMSDANRSNT 291
A +S + + ++ RG V + +G N+G+I + R
Sbjct: 1773 LA----------DVMSI---ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR--- 1816
Query: 292 LNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPELKKRAEALKVSAGN--VPGTDLGPVI 349
V A+F EA++++ E + V N V V
Sbjct: 1817 ----VAASFSQ---------------EALQYVVERVGKRTGWLVEIVNYNVENQQY--VA 1855
Query: 350 SPQAKERILSLIQSGVDEGATLLLDGRNLKV-GI-NVPIPVPLSM 392
+ + +D T +L+ +K+ I + + LS+
Sbjct: 1856 AGDLR---------ALDT-VTNVLN--FIKLQKIDIIELQKSLSL 1888
Score = 45.0 bits (106), Expect = 4e-05
Identities = 48/237 (20%), Positives = 78/237 (32%), Gaps = 57/237 (24%)
Query: 13 TPSHM-----KTFRQFIRHIATTKLYI-DGKFVESKATDWIDLHNPATNEVVTRVPKATP 66
PS M T Q ++ T ++ GK VE I L N A N VV+ P
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE------ISLVNGAKNLVVS----GPP 383
Query: 67 AEMESAVASAKKAYETWSKTSIITRQ-QVLFRLQNIIKANMKQLAENITE-EQGKTLADA 124
+ + +KA K Q ++ F + +K + + L + L A
Sbjct: 384 QSLYGLNLTLRKA-----KAPSGLDQSRIPFS-ERKLKFSNRFLP--VASPFHSHLLVPA 435
Query: 125 EGDVLRGLQVVEQCCSIPTIMQGETLAGVAKDMDIHSYRVPLG-----VTAGITPFNFPA 179
+ + L ++ AKD+ I Y G ++ I+
Sbjct: 436 SDLINKDL-------------VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 180 MI--PL-WMFPVAIACGNTHVIKPSERDPGACMMLVDMLTQA--GCPPGVVNVIHGA 231
+I P+ W TH++ + PG L + + G G V VI
Sbjct: 483 IIRLPVKW--ETTTQFKATHIL---DFGPGGASGLGVLTHRNKDGT--G-VRVIVAG 531
Score = 38.9 bits (90), Expect = 0.004
Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 59/259 (22%)
Query: 157 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAI---ACGNTHVIKPSER-----DPGAC 208
MD +S R PL ++ G +P F +A N + +P+E +P
Sbjct: 1 MDAYSTR-PLTLSHGSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 209 MML-------VDMLTQAGCPPGVVNVIHGAHDAV--NFICDHPDIRAI--SFVGSDQAGK 257
L V L + V++ ++ + DI A+ + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQENDTTL 116
Query: 258 YIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLV--GAA-----FGAAGQRCMAL 310
K + +++ + A+ D ++ L + V G A FG GQ
Sbjct: 117 ------VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQ----- 163
Query: 311 STVIFVGEAVEWLPELKKRAEALKVSAGNVPGTDLGPVISPQAKERILSLIQSGVDEGAT 370
G ++ EL+ + +G +I + E + LI++ +D
Sbjct: 164 ------GNTDDYFEELRDLYQ--------TYHVLVGDLIK-FSAETLSELIRTTLDA-EK 207
Query: 371 LLLDGRNLKVGINVPIPVP 389
+ G N+ + P P
Sbjct: 208 VFTQGLNILEWLENPSNTP 226
Score = 38.9 bits (90), Expect = 0.004
Identities = 78/489 (15%), Positives = 129/489 (26%), Gaps = 201/489 (41%)
Query: 2 YKKCICPSLQRTPSHMKTFRQFIRH-IATTKLYIDGKFVESKATDWIDLHNPATN----- 55
Y + ++ +T + IR + K++ G + W L NP+
Sbjct: 180 YHVLVGDLIKF---SAETLSELIRTTLDAEKVFTQGLNILE----W--LENPSNTPDKDY 230
Query: 56 -------------------EVVTRVPKATPAEMES----------------AVASAKKAY 80
V ++ TP E+ S A+A
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD--- 287
Query: 81 ETWSKTSIITRQ--QVLF----RLQNIIKANMKQLAENITEEQGKTLADAEGDVLRGLQV 134
+W + R+ VLF R L +I E+ +L + EG
Sbjct: 288 -SWESFFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILED---SLENNEG-------- 333
Query: 135 VEQCCSIPTIM---QGETLAGVAKDMDIHSYRVPLGVTAGITPFNFPAMI----PLWMFP 187
+P+ M T V ++ + +P G I+ N + P P
Sbjct: 334 ------VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP----P 383
Query: 188 VAIACGNTHVIK---PSERDPGACMMLVDMLTQAGCP-----PGVVNV---I----HGAH 232
++ N + K PS D Q+ P N + H
Sbjct: 384 QSLYGLNLTLRKAKAPSGLD------------QSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 233 --DAVNFICDHPDIRAISFVGSDQAGKYI--YERGAKNGKRVQSNMGAKNHGVIMSDANR 288
A + I +SF D I Y+ +G ++
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQ---IPVYD--TFDGSDLRV--------------LS 472
Query: 289 SNTLNQLVGAAFGAAGQRCMALSTVIFVGEAVEWLPELKKRAEALKVSAGNVPGTDLGPV 348
+ ++V C I V+W + A ++ D GP
Sbjct: 473 GSISERIV---------DC------IIR-LPVKW-------ETTTQFKATHI--LDFGP- 506
Query: 349 ISPQAKERILSLIQSGVDEGATLL----LDGRNLKVGINVPIPVPLSMFSFTGSRGSFLG 404
G G +L DG G+ V I G+
Sbjct: 507 ---------------GGASGLGVLTHRNKDGT----GVRV-IVA--------GTLDI--N 536
Query: 405 ENHFYG-KQ 412
+ YG KQ
Sbjct: 537 PDDDYGFKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 9e-04
Identities = 51/308 (16%), Positives = 102/308 (33%), Gaps = 87/308 (28%)
Query: 37 KFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLF 96
K+++ + D L P EV+T P+ + S + TW +
Sbjct: 309 KYLDCRPQD---L--P--REVLTTNPRR----LSIIAESIRDGLATWDNW----KHVNCD 353
Query: 97 RLQNIIKANMKQLAENITEEQGKTLA----DA--EGDVLRGL----------QVVEQCC- 139
+L II++++ L + L+ A +L + VV +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 140 -------------SIPTIMQGETLAGVAKDMDIH-----SYRVPLGVTAGITPFNFPAMI 181
SIP+I E + + +H Y +P F+ +I
Sbjct: 414 YSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKT-------FDSDDLI 465
Query: 182 PLWM---FPVAIACGNTHV--IKPSERDPGACMMLVDM----------LTQAGCPPGVVN 226
P ++ F I H+ I+ ER M+ +D T ++N
Sbjct: 466 PPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 227 VIHGAHDAVNFICD-HPD----IRAI-SFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHG 280
+ +ICD P + AI F+ + + + +K ++ + A++
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFL--PKIEENLIC--SKYTDLLRIALMAEDEA 578
Query: 281 VIMSDANR 288
+ +A++
Sbjct: 579 IF-EEAHK 585
Score = 40.2 bits (93), Expect = 0.001
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 28/120 (23%)
Query: 16 HMKTFRQFIRHIATTKLYIDGKFVESKATDWIDLHNPATNEVVTRVPKATPAEMESAVAS 75
H+K R +++D +F+E K I + A N + + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDSTAWN---------ASGSILNTLQQ 526
Query: 76 AKKAYETWSKTSIITRQQVLF-RLQNIIKANMKQLAENITEEQGKTLADAEGDVLR-GLQ 133
K Y+ + I + RL N I + ++ EN+ + D+LR L
Sbjct: 527 LKF-YKPY-----ICDNDPKYERLVNAILDFLPKIEENL-------ICSKYTDLLRIALM 573
Score = 28.3 bits (62), Expect = 6.5
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 2 YKKCICPSLQRTPSHMKTFRQFIRHIATTKLYIDGKFVESKATDWID--LHNPATNEVV 58
YK IC + + + F+ I + SK TD + L +E +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEE-------NLICSKYTDLLRIALMAE--DEAI 579
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II,
11231J, structur genomics, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 304
Score = 37.0 bits (86), Expect = 0.010
Identities = 7/111 (6%), Positives = 27/111 (24%), Gaps = 25/111 (22%)
Query: 194 NTHVIKPSERDPGACMMLVDMLTQAGC---------PPGVVNVIHGAHDA----VNFICD 240
+ ++ D + + + + P ++ +
Sbjct: 44 SANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQ 103
Query: 241 HPDIRAISFVGSD------QAGKYIYERGAKNGK------RVQSNMGAKNH 279
D ++F G + A + + + + + +G+
Sbjct: 104 IKDAPPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQ 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.070
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 325 ELKKRAEALKVSAGNVPGTDLGPVISPQA 353
LKK +LK+ A D P ++ +A
Sbjct: 21 ALKKLQASLKLYA---D--DSAPALAIKA 44
>3e4x_A APC36150; structural genomics, DINB superfamily, PSI-2, protein
structure initiative; 2.51A {Geobacillus
stearothermophilus} PDB: 3gor_A
Length = 157
Score = 29.5 bits (66), Expect = 1.3
Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 23/113 (20%)
Query: 13 TPSHMKTFRQFIRHIATTKLYI-----------DGKFVESKATDWIDLHNPATNEVVTRV 61
TP+ M T +Q H+ + + +E T+ L T + +
Sbjct: 38 TPTSM-TAKQLATHMLFSFYNFANTAKHGDPSLFRQKIEEPETNLAKLAETYTEKTRQLI 96
Query: 62 PKATPAEMESAVASAKKAYETWSKTSIIT---------RQQ--VLFRLQNIIK 103
+ + + + S + + Q V R
Sbjct: 97 ESMSDDDFDRTLDLTAIFGTQMSTAQFLQLAMDHEIHHKGQLFVYVRGMGHTD 149
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 17/68 (25%)
Query: 63 KATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAEN-ITEEQGKTL 121
A+ + AKK E W + Q+ + K N I ++
Sbjct: 103 AASKVMEQEWREKAKKDLEEW------------NQRQS--EQVEKNKINNRIADKA--FY 146
Query: 122 ADAEGDVL 129
+ D++
Sbjct: 147 QQPDADII 154
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 29.5 bits (66), Expect = 2.2
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 37 KFVES--KATDWIDLHNPATNEVVTRVPKATPAEMESAVASA-KKAYETWSKTSIITRQQ 93
+ +A WI E+ VP+ + +A K+ E S +I +
Sbjct: 248 ALTNAIVRADKWIQKAGAD--EIAKAVPEGYLLGDPAVYKAAIGKSMEGLSPDGVIP-ED 304
Query: 94 VLFRLQNIIKANMKQLAE 111
+ A +
Sbjct: 305 GAATALKALAAFVPDFDA 322
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 29.4 bits (66), Expect = 2.7
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 338 GNVPGTDLGPVISPQAKERILSLIQSGVDEGATLLLDGRNLK 379
+ P + P SP + +L ++G + L ++
Sbjct: 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 260
>3dka_A DINB-like protein; DINB/YFIT-like putative metalloenzyme fold,
structural genom joint center for structural genomics,
JCSG; 2.30A {Bacillus subtilis}
Length = 155
Score = 28.3 bits (63), Expect = 2.9
Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 11 QRTPSHMKTFRQFIRHIATTKLYIDGKFVESKATDW-----------IDLHNPATNEVVT 59
+ + M + + ++HI T+ E A+ + L T + V
Sbjct: 34 KPAETSM-SAEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLNVLAKTYTEKTVA 92
Query: 60 RVPKATPAEMESAVASAKKAYETWSKTSIIT 90
+ + T +++ + + +++
Sbjct: 93 ILEQLTEEQLDREIDLTSAFGRKVTGRALLQ 123
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 28.4 bits (64), Expect = 4.9
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 108 QLAENITEEQGKTLADAEG-DVLRGLQVVEQCC--------SIPTIMQGETLAGVAKDMD 158
+ E + +E + A +V+ + E+C + +M+ V D+
Sbjct: 287 KHLEALRKEIEEFPAQLNYNNVMDEMPFAERCARESIRRDPPLLMLMRK-----VMADVK 341
Query: 159 IHSYRVPLGVTAGITPF 175
+ SY VP G +P
Sbjct: 342 VGSYVVPKGDIIACSPL 358
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein;
NP_783940.1, structural genomics; HET: MSE; 1.55A
{Lactobacillus plantarum WCFS1}
Length = 145
Score = 27.5 bits (60), Expect = 5.3
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 5/99 (5%)
Query: 240 DHPDIRAISFVGSDQAGKYIYERGAKNGKRVQSNMGAKNHGVIMSDANRSNTLNQLVGAA 299
+ D++ ++FV + +Y K ++ +N + T A
Sbjct: 25 NEADVKIVNFVWYEAQPDTLYFSSVKTSPALKVY--DQNPDIAFITIPNDGTAGNPYLRA 82
Query: 300 FGAAGQRC---MALSTVIFVGEAVEWLPELKKRAEALKV 335
QR M ++ + L V
Sbjct: 83 QHVKLQRSTKTMTDLLPQYLETVPNYQQVWDAIGSTLVV 121
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 27.8 bits (62), Expect = 5.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 98 LQNIIKANMKQLAENITEEQGKTLAD-AEGDVLR-GLQVVE 136
+Q IK N +L I ++ + L D GD +R +V E
Sbjct: 1 MQTHIKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVRE 41
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 28.3 bits (64), Expect = 6.1
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 21/127 (16%)
Query: 59 TRVPKATPAEMESAVASAKKAYETWSKTSIITRQQVLFRLQNIIKANMKQLAENITEEQG 118
+ K +E A+ + R +++ L +++ + I
Sbjct: 21 QSMVKPAGPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQ----RDEILLANK 76
Query: 119 KTLADAEGDVLRGL---------------QVVEQCCSIPTIMQGETLAG--VAKDMDIHS 161
K L +AEG + L + Q + G L +AK++++
Sbjct: 77 KDLEEAEGRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQ 136
Query: 162 YRVPLGV 168
VP+GV
Sbjct: 137 VTVPIGV 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.399
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,768,476
Number of extensions: 416696
Number of successful extensions: 1411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1205
Number of HSP's successfully gapped: 73
Length of query: 445
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 348
Effective length of database: 3,993,456
Effective search space: 1389722688
Effective search space used: 1389722688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)