BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10609
(715 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 177/501 (35%), Positives = 261/501 (52%), Gaps = 31/501 (6%)
Query: 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274
+TLPDG +P DVA I GLA + I + +L E+ S++
Sbjct: 4 ITLPDGS-QRHYDHAVSPMDVALDIGPGLAKACIAGR--VNGELVDACDLIENDAQLSII 60
Query: 275 STLDFPVME-------GLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRIL-KEKVNT 326
+ D +E L+ +K+ P ++ + + F Y+ R L +E V
Sbjct: 61 TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPV-IDNGFYYDVDLDRTLTQEDVEA 119
Query: 327 PTTTAYRCGPL-IDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKV-NTPTTTAYRCGP 384
+ D+ + H + + F + +K+ IL E + + Y
Sbjct: 120 LEKRMHELAEKNYDVIKKKVSWHEAR-ETF-ANRGESYKVSILDENIAHDDKPGLYFHEE 177
Query: 385 LIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISFPDNXXXXXXXXXXX 430
+D+CRGPH + YW G ++ + LQR+YG ++ D
Sbjct: 178 YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLE 237
Query: 431 XXXXRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPN 490
RDHRKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P
Sbjct: 238 EAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPF 297
Query: 491 VYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMAD 550
+ + LW+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+
Sbjct: 298 MMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAE 357
Query: 551 FGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFN 609
FG HRNE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF
Sbjct: 358 FGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIV 417
Query: 610 LRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 669
++LSTRPEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R
Sbjct: 418 VKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRA 477
Query: 670 HQCATIQLDFQLPIRFNLAYV 690
QC T+QLDF LP R + +YV
Sbjct: 478 WQCGTVQLDFSLPSRLSASYV 498
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 45/169 (26%)
Query: 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNK 99
+TLPDG +P DVA I GLA + I +VNG L D C L
Sbjct: 4 ITLPDGS-QRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDA-------CDL----- 50
Query: 100 FDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAME 159
+E + +L ++ D EE + HS AH+LG A++
Sbjct: 51 -------------------------IENDAQLSIITAKD-EEGLEIIRHSCAHLLGHAIK 84
Query: 160 RVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWDK-----LKKQYD 202
+++ + GP I+NGFYYD+ LD E + +K +K YD
Sbjct: 85 QLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYD 133
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/264 (53%), Positives = 183/264 (69%), Gaps = 14/264 (5%)
Query: 440 IGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQ 498
+ + Q+LF LSPGS FF P GA I+N L+EF++ + + K GF EVV+P +Y LW+
Sbjct: 40 VSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE 99
Query: 499 TSGHWAHYSENMF---SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLH 555
SGHW +Y+++MF + D E E Y LKPMNCPGHCLIF + RS+ ELPLR +DF LH
Sbjct: 100 KSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLH 159
Query: 556 RNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYS-IFGFT------- 607
RNE SGAL+GLTR+R+F QDD HIFCT Q+ EI +L + VY+ IF F
Sbjct: 160 RNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAE 219
Query: 608 --FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 665
+ + STRP+ ++G+L+VWN AE+ L+ L G+PW NPGDGAFYGPK+DI +TD
Sbjct: 220 SNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDH 279
Query: 666 LKRPHQCATIQLDFQLPIRFNLAY 689
L++ HQ ATIQLDFQLP RF+L +
Sbjct: 280 LRKTHQVATIQLDFQLPERFDLKF 303
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 271 bits (693), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/426 (35%), Positives = 222/426 (52%), Gaps = 44/426 (10%)
Query: 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYR 333
+S+ DF +E MK IV E ER + +++ E+F + +KL ++ T Y
Sbjct: 114 ISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYS 173
Query: 334 CGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH 393
G DLCRG HV T KIK FK+
Sbjct: 174 QGDFTDLCRGVHVPSTAKIKEFKLLS---------------------------------- 199
Query: 394 NSSTYWEGKADAESLQRVYGISFPDNXXXXXXXXXXXXXXXRDHRKIGREQELFFFHEL- 452
+ YW G ++ + LQR+YG +F D RDHRKIG+E ELF +L
Sbjct: 200 TAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLV 259
Query: 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF- 511
G + P GA I + +I + G+ V +P + NV L++TSGHW HY E+MF
Sbjct: 260 GAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFP 319
Query: 512 --SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRV 569
D E E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G +HR E SGA++GL RV
Sbjct: 320 PMQLD-ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRV 378
Query: 570 RRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRLSTR----PEKYLGELE 624
R +D+HIF +QI +E ++ + +VY FGF ++ RLS R EKY + +
Sbjct: 379 RGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDD 438
Query: 625 VWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIR 684
+WNKAE L+ + + G + E G+ AFYGPK+D+ + A+ + +T QLDF LP R
Sbjct: 439 MWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPER 498
Query: 685 FNLAYV 690
F+L Y+
Sbjct: 499 FDLTYI 504
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 66/162 (40%), Gaps = 40/162 (24%)
Query: 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNK 99
+ PDG A TT D+A IS GL + K NG L DL +PLET+ +E++
Sbjct: 6 IQFPDGN-KKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTP 64
Query: 100 FDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAME 159
+EEA V HSTAH++ A++
Sbjct: 65 --------------------------------------GSEEALEVLRHSTAHLMAHAIK 86
Query: 160 RVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQ 200
R+YG GP IE GFYYD +D + +K KQ
Sbjct: 87 RLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQ 128
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 265 bits (678), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 126/257 (49%), Positives = 172/257 (66%), Gaps = 1/257 (0%)
Query: 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
RDHRKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + +
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60
Query: 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 554
LW+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG
Sbjct: 61 VLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSC 120
Query: 555 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRLS 613
HRNE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LS
Sbjct: 121 HRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLS 180
Query: 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673
TRPEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC
Sbjct: 181 TRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240
Query: 674 TIQLDFQLPIRFNLAYV 690
T+QLDF LP R + +YV
Sbjct: 241 TVQLDFSLPSRLSASYV 257
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix
Length = 471
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 131/254 (51%), Gaps = 21/254 (8%)
Query: 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514
G F G I L E + + +RG+ V +P + + +L++ SGH Y NM+ FD
Sbjct: 40 GVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD 99
Query: 515 VENETYALKPMNCPGHCLIFDHRV---RSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571
+E +A+KPMNCP H L+F + V RS LP ++ +FG +HR E SG++ GL RVR
Sbjct: 100 IEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRG 159
Query: 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNV------YSIFGFTFNLRLSTRP-----EKYL 620
F QDDAHI ++ D + + ++ V + TF +RLS ++++
Sbjct: 160 FTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFM 219
Query: 621 GELEVWNKAEKQLEASLNSFGEPW----TENPGDGAFYGPKIDITIT---DALKRPHQCA 673
G E W AE+ L + + E + E G+ AFYGPK+D + + + Q
Sbjct: 220 GSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMG 279
Query: 674 TIQLDFQLPIRFNL 687
TIQ DF LP RF L
Sbjct: 280 TIQFDFNLPRRFRL 293
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix (Selenomethionine
Derivative)
Length = 471
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 126/254 (49%), Gaps = 21/254 (8%)
Query: 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514
G F G I L E + + +RG+ V +P + + +L++ SGH Y N + FD
Sbjct: 40 GVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNXYLFD 99
Query: 515 VENETYALKPMNCPGHCLIFDHRV---RSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571
+E +A+KP NCP H L+F + V RS LP ++ +FG +HR E SG++ GL RVR
Sbjct: 100 IEGHEFAVKPXNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRG 159
Query: 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNV------YSIFGFTFNLRLSTRP-----EKYL 620
F QDDAHI ++ D + + + V + TF +RLS +++
Sbjct: 160 FTQDDAHIIVPGGRVIDVVYDVFEEXKLVLERLFKLGVSSETFKVRLSXSDKSLIGKEFX 219
Query: 621 GELEVWNKAEKQLEASLNSFGEPW----TENPGDGAFYGPKIDITIT---DALKRPHQCA 673
G E W AE+ L + + E + E G+ AFYGPK+D + + Q
Sbjct: 220 GSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIXXVEESGVSKEWQXG 279
Query: 674 TIQLDFQLPIRFNL 687
TIQ DF LP RF L
Sbjct: 280 TIQFDFNLPRRFRL 293
>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl-
Trna Synthetase
Length = 88
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98
+VTLPDGK V A+SW+TTPY +A GIS+GLAD+T+IAKVN V+WDLDRPLE +C LELL
Sbjct: 13 KVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELL- 71
Query: 99 KFDNEEASSVF 109
KF++EEA +V+
Sbjct: 72 KFEDEEAQAVY 82
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 35/39 (89%)
Query: 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
I+VTLPDGK V A+SW+TTPY +A GIS+GLAD+T+IAK
Sbjct: 12 IKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAK 50
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 45/169 (26%)
Query: 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNK 99
+TLPDG +P DVA I GLA + I +VNG L D C L
Sbjct: 4 ITLPDGS-QRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDA-------CDL----- 50
Query: 100 FDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAME 159
+E + +L ++ D EE + HS AH+LG A++
Sbjct: 51 -------------------------IENDAQLSIITAKD-EEGLEIIRHSCAHLLGHAIK 84
Query: 160 RVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWDK-----LKKQYD 202
+++ + GP I+NGFYYD+ LD E + +K +K YD
Sbjct: 85 QLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYD 133
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 30/226 (13%)
Query: 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274
+TLPDG +P DVA I GLA + I + +L E+ S++
Sbjct: 4 ITLPDGS-QRHYDHAVSPMDVALDIGPGLAKACIAGR--VNGELVDACDLIENDAQLSII 60
Query: 275 STLDFPVME-------GLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRIL-KEKVNT 326
+ D +E L+ +K+ P ++ + + F Y+ R L +E V
Sbjct: 61 TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPV-IDNGFYYDVDLDRTLTQEDVEA 119
Query: 327 PTTTAYRCGPL-IDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKV-NTPTTTAYRCGP 384
+ D+ + H + + F + +K+ IL E + + Y
Sbjct: 120 LEKRMHELAEKNYDVIKKKVSWHEAR-ETF-ANRGESYKVSILDENIAHDDKPGLYFHEE 177
Query: 385 LIDLCRGPH--------------NSSTYWEGKADAESLQRVYGISF 416
+D+CRGPH + YW G ++ + LQR+YG ++
Sbjct: 178 YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 448 FFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS 507
+ +++ G + P + L +R E+ K E++ P + +LW+ SG + Y
Sbjct: 31 YIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYG 90
Query: 508 ENMFSF-DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 566
N++ D + Y L P + + + S++ LPL + +R+E + +GL
Sbjct: 91 PNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDE-KRSRSGL 149
Query: 567 TRVRRFQQDDAHIF 580
R R F D + F
Sbjct: 150 LRGREFIMKDGYSF 163
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 9/156 (5%)
Query: 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY-NVKLWQTSGHWAHYSENMF-- 511
G F+P G F+ N ++ EY K G +++ P V L + S H + F
Sbjct: 46 GCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWV 105
Query: 512 ---SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTR 568
E AL+P + +F VRS+++LPL++ + R+E L R
Sbjct: 106 EKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNT-KPLIR 164
Query: 569 VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604
VR ++AH C D + D+ + + +IF
Sbjct: 165 VREIHWNEAH--CCHATAEDAVSQLSDYWKVIDTIF 198
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
Length = 458
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 2/134 (1%)
Query: 448 FFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS 507
+ + G + P G + + + +R E + G E++ P + LW+ SG + Y
Sbjct: 51 MLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYG 110
Query: 508 ENMFSF-DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 566
M D P N IF ++S++ LPL + R+E G+
Sbjct: 111 PEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRF-GV 169
Query: 567 TRVRRFQQDDAHIF 580
R R F DA+ F
Sbjct: 170 MRGREFLMKDAYSF 183
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 10/193 (5%)
Query: 437 HRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPN-VYNVK 495
+ ++ + E+ +H++S G +P I+ + +F +E +K G + P V
Sbjct: 35 YSQVITKSEMIEYHDIS-GCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSA 93
Query: 496 LWQTSGHWAHYSENMFSFDVENET-----YALKPMNCPGHCLIFDHRVRSWRELPLRMAD 550
L + H A ++ + +T A++P + + V+S R+LP+++
Sbjct: 94 LEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQ 153
Query: 551 FGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTVEQIGDEIVGALDFLRNVY-SIFGFTF 608
+ + R E L R R F + H F T+E+ +E++ LD VY +
Sbjct: 154 WCNVVRWEFKHPQPFL-RTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPV 212
Query: 609 NLRLSTRPEKYLG 621
T EK+ G
Sbjct: 213 VKGRKTEKEKFAG 225
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 13/162 (8%)
Query: 458 FFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-FDVE 516
F + G F+ L+ + S +G+ + +P + N ++ + + + E ++ D E
Sbjct: 179 FLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGE 238
Query: 517 NETYALKPMNCPGHCLIFDHRVRSW-----RELPLRMADFGVLHRNELSGALT---GLTR 568
+E Y + P I + W +LP+R A + R E G+ R
Sbjct: 239 DEKYLIATSEQP----ISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFR 294
Query: 569 VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL 610
V F++ + + E+ +E + Y G + +
Sbjct: 295 VHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRV 336
>pdb|3RFN|A Chain A, Epitope Backbone Grafting By Computational Design For
Improved Presentation Of Linear Epitopes On Scaffold
Proteins
Length = 159
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 250 AKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEM 309
A WT + +GN+ + + + ME L + VKE P + E+ +E+ +M
Sbjct: 25 AAKWTTSTYVKGNKGVLIVKAALELDKWAWAAMEALANEKVKENAPIKIYELPREEAEKM 84
Query: 310 FKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTK 359
F + + L + E V ++ C H + TG+I K+ K
Sbjct: 85 FGEDMYDLFPVPEDVRILKVVVIEDWN-VNACNKEHTKTTGEIGPIKIRK 133
>pdb|2Q18|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase
pdb|2Q19|X Chain X, 2-keto-3-deoxy-d-arabinonate Dehydratase Apo Form
pdb|2Q1A|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2-Oxobutyrate
pdb|2Q1C|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Calcium And 2- Oxobutyrate
pdb|2Q1D|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2,5-Dioxopentanoate
pdb|3BQB|A Chain A, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|X Chain X, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Z Chain Z, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Y Chain Y, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
Length = 293
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 119 WDLDRP-----LETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGP--- 170
W L P L++N K+ D+ A + + ++ ++Y GC +GP
Sbjct: 139 WTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYL---PQSKIYAGCCAFGPVIV 195
Query: 171 ---PIENGFYYDMYL----DGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIV 223
I+N + D+ L +G E +K++++ +E+I + + +PDG I+
Sbjct: 196 TSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDN---PIPDGTIL 252
Query: 224 PAKSWRTTPYDVAAGISKGLADSTII 249
TT + G KGL D I+
Sbjct: 253 ------TTGTAIVPGRDKGLKDEDIV 272
>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From
Methanococcus Jannaschii
Length = 237
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 20/158 (12%)
Query: 173 ENGFYYDMYLDGEAQMER-------ITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPA 225
E G Y+ M LD + + I + + LK D+E+ K P +I V + D
Sbjct: 49 EGGLYFSMVLDSKLYNPKVINLLVPICIIEVLKNYVDKELGLKFPNDIMVKVNDN----- 103
Query: 226 KSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGL 285
Y GI L D +I N NE+ E + ++ + +E L
Sbjct: 104 -------YKKLGGILTELTDDYMIIGIGINVNNQIRNEIREIAISLKEITGKELDKVEIL 156
Query: 286 MKDIVKEKQPFERLEMKKEDLIEMF-KYNPFKLRILKE 322
+ + E+L+ K+ D E+ KY + + I K+
Sbjct: 157 SNFLKTFESYLEKLKNKEIDDYEILKKYKKYSITIGKQ 194
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 455 GSCFFQPKG--AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512
GS + KG A L+ F +RGF + P+ K + +GH+ Y + +++
Sbjct: 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWA 323
Query: 513 FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE---LSGALTGLTRV 569
E + Y + L + + LPLR A + R+E + GL RV
Sbjct: 324 I-AETDLYLTGTAEVVLNAL-HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV 381
Query: 570 RRFQQDDAHIFC 581
+F + + ++
Sbjct: 382 HQFHKVEQYVLT 393
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SRY|B Chain B, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SER|A Chain A, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SER|B Chain B, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SES|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SES|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
Length = 421
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 455 GSCFFQPKG--AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512
GS + KG A L+ F +RGF + P+ K + +GH+ Y + +++
Sbjct: 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWA 214
Query: 513 FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE---LSGALTGLTRV 569
E + Y + L + + LPLR A + R+E + GL RV
Sbjct: 215 I-AETDLYLTGTAEVVLNAL-HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV 272
Query: 570 RRFQQDDAHIFC 581
+F + + ++
Sbjct: 273 HQFHKVEQYVLT 284
>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli
Length = 248
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 13 LKLDGEKQIESYSDVKVPKKCIGALNQVTLPDGKIVP 49
L++DGE+ +YS V P VT+PDGK+ P
Sbjct: 41 LEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSP 77
>pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
Length = 157
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 253 WTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY 312
WT + +GN+ ++ S + +E L + VKE P + E+ +E+ +MF
Sbjct: 29 WTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAEKMFGE 88
Query: 313 NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTK 359
+ + L + E V ++ C H + TG+I K+ K
Sbjct: 89 DMYDLFPVPEDVRILKVVVIEDWN-VNACNKEHTKTTGEIGPIKIRK 134
>pdb|3RHU|A Chain A, Epitope Backbone Grafting By Computational Design For
Improved Presentation Of Linear Epitopes On Scaffold
Proteins
pdb|3RHU|B Chain B, Epitope Backbone Grafting By Computational Design For
Improved Presentation Of Linear Epitopes On Scaffold
Proteins
Length = 160
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 253 WTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY 312
WT + +GN+ + +E L + VKE P + E+ +E+ +MF
Sbjct: 29 WTTSTYVKGNKGVLIVKAALEPDKWGIAAIEALANEKVKENAPIKIYELPREEAEKMFGE 88
Query: 313 NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTK 359
+ + L + E V ++ C H + TG+I K+ K
Sbjct: 89 DMYDLFPVPEDVRILKVVVIEDWN-VNACNKEHTKTTGEIGPIKIRK 134
>pdb|2CIM|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CIM|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CJ9|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJ9|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJB|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
pdb|2CJB|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
Length = 522
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 34/167 (20%)
Query: 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRK-RGFQEVVSPNVYNVKLWQTSGHWA------- 504
S G P+ A I+ T + + E + G++E++ P + ++W SGH
Sbjct: 220 SRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIY 279
Query: 505 -----------HYSENMFSFDVENE--TYALKP-----------MNCPGHCLIFDHRVRS 540
++ E + V +E T +K CP +
Sbjct: 280 YVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLP 339
Query: 541 WRELPLRMAD-FGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI 586
E+P+++ D G HR E SG + G+ RV F + + T E++
Sbjct: 340 NEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEV 385
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 507 SENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 566
S N+ FD+ + LKP+ C G+ L+F V + + + + + + AL +
Sbjct: 1 SMNIHGFDLGSRYMDLKPLGCGGNGLVFS-AVDNDCDKRVAIKKIVLTDPQSVKHALREI 59
Query: 567 TRVRRFQQDD-AHIFCTVEQIGDEI---VGALDFLRNVYSI 603
+RR D+ +F + G ++ VG+L L +VY +
Sbjct: 60 KIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,573,430
Number of Sequences: 62578
Number of extensions: 992471
Number of successful extensions: 2156
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2108
Number of HSP's gapped (non-prelim): 37
length of query: 715
length of database: 14,973,337
effective HSP length: 106
effective length of query: 609
effective length of database: 8,340,069
effective search space: 5079102021
effective search space used: 5079102021
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)