Query psy10609
Match_columns 715
No_of_seqs 431 out of 3326
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:44:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02908 threonyl-tRNA synthet 100.0 7E-101 2E-105 898.5 45.6 517 18-699 38-557 (686)
2 KOG1637|consensus 100.0 4.3E-97 9E-102 787.0 19.1 424 41-699 4-427 (560)
3 PRK12444 threonyl-tRNA synthet 100.0 9.5E-93 2.1E-97 827.2 46.6 502 37-699 5-509 (639)
4 COG0441 ThrS Threonyl-tRNA syn 100.0 6.6E-87 1.4E-91 753.2 31.3 434 136-699 20-455 (589)
5 PLN02837 threonine-tRNA ligase 100.0 4E-84 8.6E-89 748.4 37.0 442 136-701 36-486 (614)
6 PRK00413 thrS threonyl-tRNA sy 100.0 4.7E-82 1E-86 738.4 46.4 504 37-701 1-509 (638)
7 PRK12305 thrS threonyl-tRNA sy 100.0 5.5E-77 1.2E-81 687.9 37.9 441 138-701 1-446 (575)
8 TIGR00418 thrS threonyl-tRNA s 100.0 1.3E-72 2.7E-77 650.2 35.8 432 147-700 1-439 (563)
9 PRK14799 thrS threonyl-tRNA sy 100.0 1.7E-73 3.8E-78 646.9 27.1 343 348-699 45-406 (545)
10 cd00771 ThrRS_core Threonyl-tR 100.0 3.3E-61 7.1E-66 513.7 26.9 264 436-699 1-266 (298)
11 PRK03991 threonyl-tRNA synthet 100.0 3.3E-51 7.2E-56 471.1 24.9 286 407-699 164-459 (613)
12 cd00778 ProRS_core_arch_euk Pr 100.0 1.8E-42 3.9E-47 363.1 19.2 234 438-708 7-249 (261)
13 cd00770 SerRS_core Seryl-tRNA 100.0 1.9E-42 4.1E-47 369.2 15.5 248 422-708 5-266 (297)
14 PRK12325 prolyl-tRNA synthetas 100.0 1.5E-41 3.3E-46 380.1 20.5 260 429-699 15-311 (439)
15 PRK05431 seryl-tRNA synthetase 100.0 2.1E-41 4.7E-46 376.5 17.8 249 421-708 122-385 (425)
16 TIGR00414 serS seryl-tRNA synt 100.0 1.1E-40 2.4E-45 370.0 18.3 250 421-708 125-387 (418)
17 PLN02678 seryl-tRNA synthetase 100.0 3.3E-40 7.1E-45 365.8 17.9 265 393-708 115-394 (448)
18 PLN02320 seryl-tRNA synthetase 100.0 9.2E-40 2E-44 363.8 12.2 250 421-707 185-459 (502)
19 PRK08661 prolyl-tRNA synthetas 100.0 2.6E-38 5.6E-43 357.2 20.5 230 435-699 16-254 (477)
20 cd00772 ProRS_core Prolyl-tRNA 100.0 2.7E-37 5.8E-42 324.3 22.8 234 439-710 8-253 (264)
21 TIGR00408 proS_fam_I prolyl-tR 100.0 7.1E-38 1.5E-42 353.0 17.6 238 417-699 3-249 (472)
22 cd00779 ProRS_core_prok Prolyl 100.0 5.1E-37 1.1E-41 320.9 17.5 233 439-710 8-244 (255)
23 COG0172 SerS Seryl-tRNA synthe 100.0 5.5E-37 1.2E-41 334.4 13.2 253 416-708 119-388 (429)
24 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 6.7E-34 1.5E-38 292.3 19.5 212 463-699 1-218 (235)
25 PRK09194 prolyl-tRNA synthetas 100.0 5.8E-33 1.3E-37 320.1 21.9 183 429-615 15-199 (565)
26 PRK04173 glycyl-tRNA synthetas 100.0 2.3E-33 5E-38 314.8 17.8 228 439-699 9-320 (456)
27 PRK00960 seryl-tRNA synthetase 100.0 6.4E-33 1.4E-37 311.0 14.1 248 420-696 181-468 (517)
28 COG0442 ProS Prolyl-tRNA synth 100.0 1.3E-32 2.9E-37 306.8 16.5 233 429-699 15-252 (500)
29 KOG2509|consensus 100.0 1.2E-32 2.5E-37 294.7 14.3 238 431-707 148-402 (455)
30 TIGR00409 proS_fam_II prolyl-t 100.0 1.9E-30 4.2E-35 297.8 20.0 183 429-615 15-199 (568)
31 PF00587 tRNA-synt_2b: tRNA sy 100.0 3.6E-30 7.7E-35 253.8 12.7 160 466-626 1-169 (173)
32 TIGR00415 serS_MJ seryl-tRNA s 100.0 1.1E-29 2.5E-34 281.0 16.9 229 435-688 195-462 (520)
33 PLN02908 threonyl-tRNA synthet 100.0 1.3E-28 2.8E-33 289.4 17.3 213 180-418 19-258 (686)
34 CHL00201 syh histidine-tRNA sy 100.0 2.5E-27 5.5E-32 265.1 20.4 226 452-685 6-294 (430)
35 cd00774 GlyRS-like_core Glycyl 99.9 3.7E-26 7.9E-31 239.0 13.8 196 439-645 3-209 (254)
36 COG0124 HisS Histidyl-tRNA syn 99.9 4.2E-24 9.1E-29 235.9 17.7 156 453-616 7-167 (429)
37 KOG2324|consensus 99.9 3.3E-24 7.2E-29 224.0 13.4 174 439-615 29-205 (457)
38 PRK12444 threonyl-tRNA synthet 99.9 1.3E-22 2.9E-27 237.7 14.4 182 210-418 3-211 (639)
39 PLN02530 histidine-tRNA ligase 99.9 7.7E-22 1.7E-26 224.2 16.1 156 452-616 72-232 (487)
40 KOG4163|consensus 99.9 2.8E-22 6E-27 213.4 10.5 243 413-699 59-311 (551)
41 PRK00037 hisS histidyl-tRNA sy 99.9 5E-21 1.1E-25 213.4 18.0 171 452-638 6-181 (412)
42 PRK00413 thrS threonyl-tRNA sy 99.8 5.3E-21 1.1E-25 224.5 13.6 180 212-418 1-207 (638)
43 PRK12420 histidyl-tRNA synthet 99.8 1.6E-20 3.6E-25 210.1 16.1 156 452-616 6-164 (423)
44 TIGR00442 hisS histidyl-tRNA s 99.8 4.4E-20 9.6E-25 204.9 18.4 156 453-616 3-163 (397)
45 cd00773 HisRS-like_core Class 99.8 3.3E-20 7.2E-25 194.7 15.7 192 464-664 2-219 (261)
46 PRK12292 hisZ ATP phosphoribos 99.8 8.1E-20 1.8E-24 202.5 15.7 156 452-616 5-164 (391)
47 TIGR00443 hisZ_biosyn_reg ATP 99.8 1.1E-19 2.4E-24 195.8 15.3 150 457-616 1-153 (314)
48 PRK12421 ATP phosphoribosyltra 99.8 2.5E-19 5.4E-24 198.5 16.5 154 452-616 9-167 (392)
49 PLN02972 Histidyl-tRNA synthet 99.8 4.5E-19 9.8E-24 206.1 16.4 152 451-616 328-484 (763)
50 TIGR00389 glyS_dimeric glycyl- 99.8 4E-19 8.6E-24 201.5 12.4 225 439-667 8-310 (551)
51 PRK14894 glycyl-tRNA synthetas 99.8 7.4E-19 1.6E-23 194.3 13.2 153 454-607 30-226 (539)
52 COG0423 GRS1 Glycyl-tRNA synth 99.8 9.2E-19 2E-23 192.6 12.5 147 438-585 10-226 (558)
53 PRK12293 hisZ ATP phosphoribos 99.8 3.4E-18 7.4E-23 181.3 15.3 144 452-616 7-151 (281)
54 cd00768 class_II_aaRS-like_cor 99.8 3.2E-17 6.9E-22 164.5 18.0 194 467-699 2-199 (211)
55 PF13393 tRNA-synt_His: Histid 99.7 2E-17 4.3E-22 177.7 15.0 151 455-616 1-155 (311)
56 PLN02734 glycyl-tRNA synthetas 99.7 4.6E-18 1E-22 195.5 9.5 213 454-667 99-409 (684)
57 PRK12295 hisZ ATP phosphoribos 99.6 2E-15 4.3E-20 166.2 16.3 135 467-616 7-146 (373)
58 KOG1936|consensus 99.6 1.9E-15 4.2E-20 162.0 10.8 152 452-615 62-218 (518)
59 COG3705 HisZ ATP phosphoribosy 99.6 5.7E-15 1.2E-19 161.0 9.7 152 452-615 5-160 (390)
60 PRK09537 pylS pyrolysyl-tRNA s 99.5 7.5E-13 1.6E-17 145.8 15.6 133 467-611 206-340 (417)
61 KOG2298|consensus 99.4 2E-14 4.4E-19 155.5 2.2 213 454-667 36-343 (599)
62 TIGR02367 PylS pyrrolysyl-tRNA 99.4 2.5E-12 5.3E-17 141.5 14.9 165 434-611 203-376 (453)
63 PRK12294 hisZ ATP phosphoribos 99.2 5.5E-11 1.2E-15 125.6 12.9 131 465-615 8-142 (272)
64 COG0441 ThrS Threonyl-tRNA syn 99.2 1.6E-11 3.4E-16 140.8 7.2 106 283-417 34-155 (589)
65 PLN02837 threonine-tRNA ligase 99.2 2.7E-11 5.9E-16 141.7 8.0 127 269-420 30-185 (614)
66 PRK12305 thrS threonyl-tRNA sy 99.2 4.8E-11 1E-15 139.0 8.1 113 282-419 13-143 (575)
67 TIGR00418 thrS threonyl-tRNA s 99.1 7E-11 1.5E-15 137.3 8.0 112 282-417 4-135 (563)
68 PF02824 TGS: TGS domain; Int 99.1 1E-10 2.2E-15 95.7 5.5 59 38-97 1-59 (60)
69 PRK07080 hypothetical protein; 99.0 2.5E-09 5.5E-14 113.2 14.6 162 454-622 37-224 (317)
70 PRK04172 pheS phenylalanyl-tRN 99.0 3.6E-09 7.7E-14 121.0 12.7 144 454-610 223-408 (489)
71 PRK01584 alanyl-tRNA synthetas 98.7 5.5E-08 1.2E-12 112.1 10.4 125 143-412 452-579 (594)
72 PF02824 TGS: TGS domain; Int 98.5 5.2E-08 1.1E-12 79.8 3.2 60 213-275 1-60 (60)
73 PTZ00326 phenylalanyl-tRNA syn 98.5 6.4E-07 1.4E-11 101.2 13.0 140 460-607 224-411 (494)
74 cd00669 Asp_Lys_Asn_RS_core As 98.3 7.3E-06 1.6E-10 86.9 13.2 110 465-593 2-114 (269)
75 PRK09350 poxB regulator PoxA; 98.3 1.7E-06 3.6E-11 93.4 8.0 114 464-591 5-121 (306)
76 cd01667 TGS_ThrRS_N TGS _ThrRS 98.3 1.9E-06 4.1E-11 68.7 6.0 58 39-97 2-59 (61)
77 PF01409 tRNA-synt_2d: tRNA sy 98.0 4.8E-05 1E-09 79.7 12.2 137 463-611 15-161 (247)
78 cd00776 AsxRS_core Asx tRNA sy 97.9 9.4E-05 2E-09 80.5 12.0 112 464-594 24-137 (322)
79 cd00777 AspRS_core Asp tRNA sy 97.9 8.8E-05 1.9E-09 79.2 11.3 110 465-594 2-115 (280)
80 cd01616 TGS The TGS domain, na 97.9 2.9E-05 6.2E-10 61.4 5.6 58 39-97 2-59 (60)
81 PRK00488 pheS phenylalanyl-tRN 97.8 0.00042 9.2E-09 75.3 16.0 134 454-604 98-236 (339)
82 PF00152 tRNA-synt_2: tRNA syn 97.8 0.00043 9.4E-09 75.6 15.5 116 464-598 22-144 (335)
83 PRK00252 alaS alanyl-tRNA synt 97.7 7.4E-05 1.6E-09 91.0 8.5 35 375-412 640-675 (865)
84 TIGR00458 aspS_arch aspartyl-t 97.7 0.00037 8E-09 78.8 13.2 114 463-594 132-246 (428)
85 cd01668 TGS_RelA_SpoT TGS_RelA 97.7 9.6E-05 2.1E-09 59.5 5.9 58 39-97 2-59 (60)
86 cd00496 PheRS_alpha_core Pheny 97.7 0.00084 1.8E-08 69.0 14.1 125 467-605 3-132 (218)
87 TIGR00468 pheS phenylalanyl-tR 97.6 0.00048 1E-08 74.1 12.7 130 463-607 70-204 (294)
88 COG0016 PheS Phenylalanyl-tRNA 97.6 0.00048 1E-08 74.6 12.5 139 453-605 100-244 (335)
89 PRK05159 aspC aspartyl-tRNA sy 97.6 0.00043 9.3E-09 78.5 12.7 113 463-594 135-250 (437)
90 COG0173 AspS Aspartyl-tRNA syn 97.6 0.0003 6.6E-09 79.6 11.1 118 463-603 140-261 (585)
91 PRK06462 asparagine synthetase 97.6 0.00042 9.1E-09 75.9 11.6 121 463-594 29-151 (335)
92 TIGR00459 aspS_bact aspartyl-t 97.6 0.00048 1E-08 80.2 11.9 112 463-594 137-252 (583)
93 cd00775 LysRS_core Lys_tRNA sy 97.5 0.00089 1.9E-08 73.2 13.0 113 464-595 8-123 (329)
94 cd01667 TGS_ThrRS_N TGS _ThrRS 97.5 0.00012 2.5E-09 58.3 4.5 60 213-275 1-60 (61)
95 TIGR00344 alaS alanine--tRNA l 97.5 0.00021 4.7E-09 86.7 8.7 125 143-361 555-682 (851)
96 PRK00476 aspS aspartyl-tRNA sy 97.5 0.00054 1.2E-08 80.2 11.1 112 463-594 140-255 (588)
97 COG2269 Truncated, possibly in 97.5 0.00035 7.6E-09 73.1 8.1 127 456-595 4-136 (322)
98 TIGR00457 asnS asparaginyl-tRN 97.4 0.0007 1.5E-08 77.0 11.0 112 464-594 136-257 (453)
99 PRK03932 asnC asparaginyl-tRNA 97.4 0.00094 2E-08 76.0 12.0 113 463-594 132-254 (450)
100 PLN02850 aspartate-tRNA ligase 97.4 0.00065 1.4E-08 78.6 10.6 113 464-594 225-339 (530)
101 PLN02903 aminoacyl-tRNA ligase 97.4 0.00091 2E-08 78.5 11.5 113 463-594 202-318 (652)
102 PRK00484 lysS lysyl-tRNA synth 97.4 0.0016 3.4E-08 74.9 13.1 113 463-594 171-286 (491)
103 KOG1637|consensus 97.4 8E-05 1.7E-09 82.1 2.4 141 213-419 2-142 (560)
104 PRK12820 bifunctional aspartyl 97.4 0.00089 1.9E-08 79.3 11.1 114 463-594 155-270 (706)
105 TIGR00462 genX lysyl-tRNA synt 97.4 0.00046 1E-08 74.6 8.2 100 465-582 2-106 (304)
106 PTZ00417 lysine-tRNA ligase; P 97.4 0.0018 3.9E-08 75.5 13.4 112 464-594 253-367 (585)
107 PTZ00385 lysyl-tRNA synthetase 97.3 0.0019 4.2E-08 75.8 12.3 112 464-594 233-347 (659)
108 PTZ00425 asparagine-tRNA ligas 97.2 0.0026 5.7E-08 73.9 12.8 33 463-495 214-246 (586)
109 cd01616 TGS The TGS domain, na 97.2 0.00061 1.3E-08 53.7 4.8 60 213-275 1-60 (60)
110 PRK12445 lysyl-tRNA synthetase 97.2 0.0031 6.7E-08 72.7 12.2 113 463-594 183-298 (505)
111 TIGR00499 lysS_bact lysyl-tRNA 97.1 0.0024 5.3E-08 73.5 11.1 113 463-594 171-286 (496)
112 PTZ00401 aspartyl-tRNA synthet 97.1 0.0016 3.5E-08 75.6 9.3 113 464-594 213-327 (550)
113 KOG2411|consensus 97.1 0.00016 3.5E-09 80.1 1.1 110 463-593 177-292 (628)
114 PLN02853 Probable phenylalanyl 97.1 0.0049 1.1E-07 70.0 12.4 131 466-606 222-395 (492)
115 PLN02502 lysyl-tRNA synthetase 97.1 0.0037 7.9E-08 72.7 11.7 112 464-594 229-343 (553)
116 PLN02603 asparaginyl-tRNA synt 97.0 0.0046 1E-07 71.9 11.8 100 464-582 226-356 (565)
117 PLN02900 alanyl-tRNA synthetas 97.0 0.0022 4.7E-08 78.7 9.0 126 143-361 593-722 (936)
118 PF07973 tRNA_SAD: Threonyl an 96.9 0.00049 1.1E-08 52.8 1.8 31 377-410 1-32 (44)
119 PRK02983 lysS lysyl-tRNA synth 96.9 0.0038 8.2E-08 78.0 10.3 112 464-594 770-884 (1094)
120 PRK13902 alaS alanyl-tRNA synt 96.8 0.0031 6.6E-08 77.2 8.7 82 274-360 633-716 (900)
121 COG0017 AsnS Aspartyl/asparagi 96.8 0.011 2.3E-07 66.4 11.9 101 463-582 133-234 (435)
122 PLN02221 asparaginyl-tRNA synt 96.7 0.013 2.8E-07 68.4 12.6 33 463-495 170-202 (572)
123 PLN02532 asparagine-tRNA synth 96.7 0.011 2.3E-07 69.4 11.4 33 463-495 234-266 (633)
124 TIGR03683 A-tRNA_syn_arch alan 96.5 0.0075 1.6E-07 73.9 9.0 82 274-360 637-720 (902)
125 cd01668 TGS_RelA_SpoT TGS_RelA 96.5 0.0052 1.1E-07 49.3 5.1 59 214-275 2-60 (60)
126 smart00863 tRNA_SAD Threonyl a 96.4 0.0014 3E-08 50.0 1.2 38 377-417 1-39 (44)
127 PRK09616 pheT phenylalanyl-tRN 96.3 0.036 7.9E-07 64.8 12.9 134 463-609 357-494 (552)
128 COG1190 LysU Lysyl-tRNA synthe 95.6 0.057 1.2E-06 61.2 9.7 115 465-604 181-297 (502)
129 KOG1885|consensus 95.4 0.025 5.4E-07 63.0 6.0 116 464-604 225-342 (560)
130 TIGR00470 sepS O-phosphoseryl- 95.3 0.045 9.8E-07 61.7 7.5 85 518-611 181-267 (533)
131 PRK11092 bifunctional (p)ppGpp 95.1 0.039 8.5E-07 66.1 6.9 63 35-98 385-447 (702)
132 TIGR00344 alaS alanine--tRNA l 94.7 0.048 1E-06 66.8 6.2 100 283-412 563-682 (851)
133 PRK14799 thrS threonyl-tRNA sy 94.4 0.013 2.8E-07 68.3 0.6 56 300-361 45-101 (545)
134 TIGR00691 spoT_relA (p)ppGpp s 94.1 0.092 2E-06 62.9 6.8 62 35-97 359-420 (683)
135 cd00769 PheRS_beta_core Phenyl 94.0 0.32 7E-06 49.1 9.6 129 468-607 3-140 (198)
136 COG0013 AlaS Alanyl-tRNA synth 94.0 0.16 3.5E-06 61.5 8.4 82 274-361 607-689 (879)
137 KOG1035|consensus 93.6 0.29 6.4E-06 60.6 9.8 139 457-615 925-1068(1351)
138 PRK08364 sulfur carrier protei 93.6 0.25 5.4E-06 41.7 6.7 59 35-97 2-64 (70)
139 PRK07440 hypothetical protein; 93.6 0.32 7E-06 41.1 7.3 59 35-97 2-64 (70)
140 PLN02900 alanyl-tRNA synthetas 93.5 0.16 3.5E-06 62.7 7.6 101 283-412 601-722 (936)
141 COG0317 SpoT Guanosine polypho 93.5 0.13 2.9E-06 60.9 6.6 63 34-97 385-447 (701)
142 PRK13902 alaS alanyl-tRNA synt 93.5 0.14 3.1E-06 63.0 7.0 102 282-412 595-717 (900)
143 PRK10872 relA (p)ppGpp synthet 93.4 0.12 2.6E-06 62.1 6.1 63 35-98 403-465 (743)
144 PRK11092 bifunctional (p)ppGpp 93.4 0.1 2.2E-06 62.7 5.5 66 210-278 385-450 (702)
145 PLN02788 phenylalanine-tRNA sy 93.2 0.66 1.4E-05 52.1 11.1 130 463-606 66-213 (402)
146 COG0013 AlaS Alanyl-tRNA synth 92.7 0.3 6.5E-06 59.3 8.0 102 282-413 569-690 (879)
147 COG0317 SpoT Guanosine polypho 92.7 0.34 7.3E-06 57.7 8.2 90 186-278 352-451 (701)
148 KOG0554|consensus 92.5 0.54 1.2E-05 51.9 8.9 104 461-582 129-240 (446)
149 PRK05659 sulfur carrier protei 92.4 0.51 1.1E-05 38.9 6.8 56 38-97 1-60 (66)
150 PLN02961 alanine-tRNA ligase 92.1 0.33 7.2E-06 50.2 6.6 77 279-360 133-210 (223)
151 TIGR03683 A-tRNA_syn_arch alan 91.9 0.34 7.3E-06 59.8 7.3 102 282-412 599-721 (902)
152 KOG2784|consensus 91.5 0.22 4.7E-06 54.2 4.4 131 467-607 214-387 (483)
153 TIGR00691 spoT_relA (p)ppGpp s 90.9 0.49 1.1E-05 56.8 7.1 66 210-278 359-424 (683)
154 cd00565 ThiS ThiaminS ubiquiti 90.8 0.59 1.3E-05 38.6 5.6 54 40-97 2-59 (65)
155 PRK10872 relA (p)ppGpp synthet 90.8 0.63 1.4E-05 56.1 7.9 88 188-278 371-468 (743)
156 COG2104 ThiS Sulfur transfer p 90.6 1 2.3E-05 37.9 6.8 57 37-97 2-62 (68)
157 TIGR00471 pheT_arch phenylalan 90.6 1.6 3.4E-05 51.3 10.9 133 464-609 361-496 (551)
158 PRK07440 hypothetical protein; 89.3 0.83 1.8E-05 38.6 5.3 62 210-275 2-65 (70)
159 PRK06437 hypothetical protein; 89.2 1.3 2.9E-05 37.0 6.4 49 46-97 13-61 (67)
160 PRK06944 sulfur carrier protei 88.5 1.5 3.1E-05 36.1 6.2 55 38-97 1-59 (65)
161 PRK06488 sulfur carrier protei 88.1 1.7 3.7E-05 35.8 6.3 55 38-97 1-59 (65)
162 KOG0556|consensus 88.0 0.6 1.3E-05 51.6 4.4 97 465-579 229-325 (533)
163 PRK08053 sulfur carrier protei 86.4 2.8 6.1E-05 34.7 6.8 56 38-97 1-60 (66)
164 KOG0555|consensus 86.4 1.8 3.9E-05 47.8 6.9 94 465-579 244-339 (545)
165 PRK07696 sulfur carrier protei 86.2 2.5 5.5E-05 35.3 6.3 57 38-97 1-61 (67)
166 PLN02265 probable phenylalanyl 85.2 4.7 0.0001 47.9 10.3 132 465-607 397-531 (597)
167 PRK06083 sulfur carrier protei 84.6 1 2.2E-05 39.6 3.4 63 209-275 15-79 (84)
168 PF07973 tRNA_SAD: Threonyl an 84.5 0.43 9.3E-06 36.6 0.9 31 330-360 2-33 (44)
169 COG2872 Predicted metal-depend 83.3 4.1 8.8E-05 42.8 7.7 79 277-360 138-220 (241)
170 PRK08053 sulfur carrier protei 82.8 2.5 5.4E-05 35.1 4.9 60 213-276 1-62 (66)
171 COG2104 ThiS Sulfur transfer p 81.7 3.5 7.5E-05 34.8 5.3 60 212-275 2-63 (68)
172 PRK08364 sulfur carrier protei 80.6 4.1 8.8E-05 34.3 5.4 60 211-276 3-66 (70)
173 TIGR01683 thiS thiamine biosyn 80.1 5.1 0.00011 32.9 5.8 51 44-97 4-58 (64)
174 PRK05659 sulfur carrier protei 78.2 4.5 9.8E-05 33.3 4.9 58 214-275 2-61 (66)
175 PF14453 ThiS-like: ThiS-like 78.1 7.1 0.00015 31.8 5.8 53 39-97 2-54 (57)
176 PRK06083 sulfur carrier protei 77.2 11 0.00023 33.2 7.2 59 35-97 16-78 (84)
177 TIGR00469 pheS_mito phenylalan 76.1 18 0.0004 41.3 10.5 105 469-582 46-166 (460)
178 PRK06253 O-phosphoseryl-tRNA s 76.1 7.2 0.00016 45.1 7.4 84 519-610 183-267 (529)
179 PRK07696 sulfur carrier protei 75.5 5.4 0.00012 33.3 4.7 59 213-275 1-62 (67)
180 PRK06944 sulfur carrier protei 74.6 6.1 0.00013 32.3 4.8 58 214-276 2-61 (65)
181 PRK01777 hypothetical protein; 73.9 9.1 0.0002 34.4 6.0 49 48-97 21-74 (95)
182 COG0072 PheT Phenylalanyl-tRNA 73.6 7.9 0.00017 46.5 7.2 137 464-611 350-494 (650)
183 COG2024 Phenylalanyl-tRNA synt 73.6 2.5 5.4E-05 46.5 2.7 67 538-611 200-267 (536)
184 cd00754 MoaD Ubiquitin domain 72.8 6.9 0.00015 33.1 4.9 44 54-97 25-74 (80)
185 PLN02961 alanine-tRNA ligase 72.3 6.4 0.00014 40.7 5.3 79 304-411 131-210 (223)
186 PRK06488 sulfur carrier protei 71.7 6.9 0.00015 32.2 4.4 59 213-276 1-61 (65)
187 PLN02799 Molybdopterin synthas 70.6 3.4 7.4E-05 35.5 2.5 50 47-97 22-76 (82)
188 PRK11840 bifunctional sulfur c 70.4 10 0.00022 41.4 6.5 56 38-97 1-60 (326)
189 COG2872 Predicted metal-depend 69.6 11 0.00024 39.5 6.4 103 282-411 101-220 (241)
190 PRK05863 sulfur carrier protei 69.4 8.4 0.00018 31.9 4.4 59 213-275 1-60 (65)
191 CHL00192 syfB phenylalanyl-tRN 69.1 29 0.00063 42.2 10.7 129 463-608 396-534 (704)
192 PRK06437 hypothetical protein; 68.4 13 0.00029 31.0 5.5 60 212-276 4-63 (67)
193 cd01666 TGS_DRG_C TGS_DRG_C: 67.2 6.6 0.00014 33.7 3.5 49 48-97 19-74 (75)
194 PRK05863 sulfur carrier protei 66.5 15 0.00032 30.4 5.3 54 38-97 1-59 (65)
195 cd00565 ThiS ThiaminS ubiquiti 65.1 10 0.00022 31.2 4.1 55 219-276 5-61 (65)
196 PF02597 ThiS: ThiS family; I 64.6 12 0.00026 31.3 4.6 44 54-97 21-71 (77)
197 smart00863 tRNA_SAD Threonyl a 64.5 2.5 5.5E-05 31.8 0.4 31 330-360 2-33 (44)
198 TIGR00472 pheT_bact phenylalan 63.2 37 0.00081 41.8 10.3 130 468-607 494-632 (798)
199 KOG0188|consensus 60.5 16 0.00034 43.8 5.9 83 274-361 610-696 (895)
200 cd01669 TGS_Ygr210_C TGS_Ygr21 54.4 21 0.00045 30.8 4.3 43 54-97 30-75 (76)
201 TIGR01683 thiS thiamine biosyn 53.9 21 0.00045 29.2 4.1 54 219-275 4-59 (64)
202 PRK00629 pheT phenylalanyl-tRN 50.2 27 0.00058 43.0 6.0 133 463-607 485-625 (791)
203 PRK11840 bifunctional sulfur c 42.2 37 0.0008 37.2 4.9 60 213-276 1-62 (326)
204 cd01666 TGS_DRG_C TGS_DRG_C: 41.9 23 0.0005 30.4 2.6 50 222-274 18-74 (75)
205 TIGR01682 moaD molybdopterin c 41.7 58 0.0013 27.7 5.2 44 54-97 26-74 (80)
206 PF10545 MADF_DNA_bdg: Alcohol 36.8 36 0.00079 28.6 3.1 32 113-155 6-37 (85)
207 TIGR00409 proS_fam_II prolyl-t 33.8 22 0.00047 42.1 1.6 39 667-708 406-445 (568)
208 PRK00446 cyaY frataxin-like pr 33.8 53 0.0011 30.1 3.8 52 1-52 1-52 (105)
209 PRK01777 hypothetical protein; 32.7 1.9E+02 0.0042 26.0 7.1 54 222-278 20-78 (95)
210 cd00754 MoaD Ubiquitin domain 30.6 91 0.002 26.1 4.6 46 229-276 25-76 (80)
211 PLN02799 Molybdopterin synthas 30.3 89 0.0019 26.7 4.5 52 222-276 22-78 (82)
212 cd01669 TGS_Ygr210_C TGS_Ygr21 27.8 64 0.0014 27.7 3.1 47 225-275 27-76 (76)
213 TIGR01687 moaD_arch MoaD famil 26.3 1.1E+02 0.0023 26.5 4.3 44 54-97 24-82 (88)
214 PF02196 RBD: Raf-like Ras-bin 25.7 1.3E+02 0.0027 25.5 4.5 29 37-66 2-32 (71)
215 cd00503 Frataxin Frataxin is a 23.7 1.2E+02 0.0025 27.8 4.2 52 1-52 1-53 (105)
216 cd04938 TGS_Obg-like TGS_Obg-l 23.7 1.7E+02 0.0037 25.1 5.0 44 54-97 31-75 (76)
217 PF13510 Fer2_4: 2Fe-2S iron-s 23.1 69 0.0015 27.7 2.5 33 210-244 1-33 (82)
218 smart00595 MADF subfamily of S 23.0 74 0.0016 27.4 2.7 33 113-156 7-39 (89)
219 PRK11130 moaD molybdopterin sy 22.5 2.2E+02 0.0047 24.4 5.5 44 54-97 25-75 (81)
220 smart00455 RBD Raf-like Ras-bi 21.7 2.1E+02 0.0045 24.1 5.0 50 38-88 2-57 (70)
221 PRK07569 bidirectional hydroge 21.2 2.8E+02 0.0061 28.8 7.0 83 210-295 1-97 (234)
No 1
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=7.1e-101 Score=898.51 Aligned_cols=517 Identities=61% Similarity=1.104 Sum_probs=485.4
Q ss_pred hhhhhhccCccccccccCcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 18 EKQIESYSDVKVPKKCIGALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|.+.+..... .+++|++|||++..+++|+|||+|||+.+++++++.+++|+|||++|||++||+.||+|+|+
T Consensus 38 ~~~~~~~~~~~~------~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l 111 (686)
T PLN02908 38 ARQLARLESAGG------DPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLF 111 (686)
T ss_pred HHHHHHhhhccC------CceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEeecCccccCCCeeEEe
Confidence 455555443222 34999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhhcCccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceeecCCcC--Cc
Q psy10609 98 NKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIE--NG 175 (715)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 175 (715)
+|++++|.++||||++||||+|++++|+..+++||+++ +|
T Consensus 112 --------------------------------------~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~G 153 (686)
T PLN02908 112 --------------------------------------KFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEG 153 (686)
T ss_pred --------------------------------------ccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCc
Confidence 99999999999999999999999999977899999999 99
Q ss_pred eEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCc
Q psy10609 176 FYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTR 255 (715)
Q Consensus 176 ~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~ 255 (715)
||||+++++..
T Consensus 154 fy~d~~~~~~~--------------------------------------------------------------------- 164 (686)
T PLN02908 154 FYYDAFYGDRT--------------------------------------------------------------------- 164 (686)
T ss_pred EEEEeecCCCC---------------------------------------------------------------------
Confidence 99999864320
Q ss_pred ccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeC
Q psy10609 256 ANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCG 335 (715)
Q Consensus 256 ~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~ 335 (715)
+|.+++..|+..|.++|+++.|+.+..++.++|.++|+.++++.++++...+...+++|+||
T Consensus 165 ------------------~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g 226 (686)
T PLN02908 165 ------------------LNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCG 226 (686)
T ss_pred ------------------CCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEEC
Confidence 56678889999999999999999999999999999999888899999854225578999999
Q ss_pred CcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhccc
Q psy10609 336 PLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGIS 415 (715)
Q Consensus 336 ~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~ 415 (715)
+++|+|+|||+++|+..++|++.+ +.+.+|.|+.++-.|||+||.+
T Consensus 227 ~~~D~c~Gphv~sTg~ik~f~l~~----------------------------------~~~~~~lg~~~~~~lqRi~G~s 272 (686)
T PLN02908 227 PLVDLCRGPHIPNTSFVKAFACLK----------------------------------ASSAYWRGDVDRESLQRVYGIS 272 (686)
T ss_pred CEEEecCCCCCCCCCccceeEEEE----------------------------------ecceEEcCCCcchhhEEEeeec
Confidence 999999999999999999998888 4455888999999999999999
Q ss_pred CCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 416 FPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 416 ~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
||++++|++|++..+|+++|||++||++++||+|++.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.+
T Consensus 273 fp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~ 352 (686)
T PLN02908 273 FPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMD 352 (686)
T ss_pred cCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEe
Q psy10609 496 LWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQD 575 (715)
Q Consensus 496 l~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~ 575 (715)
+|+.||||++|.++||.++.++++++||||+||+|+.+|+++.+||++||+|++++|+|||+|++|.++||+|+|||+|+
T Consensus 353 l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~ 432 (686)
T PLN02908 353 LWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQD 432 (686)
T ss_pred HHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEe
Confidence 99999999999999999977789999999999999999999999999999999999999999999988999999999999
Q ss_pred eEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCcccc
Q psy10609 576 DAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYG 655 (715)
Q Consensus 576 d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYg 655 (715)
|+|+||+++|+.+|+.++++++.++|+.||++|++.+++|+++++|+.+.|+.++..|.++|++.|.+|.+.+|++||||
T Consensus 433 d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afyg 512 (686)
T PLN02908 433 DAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYG 512 (686)
T ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCc-eecc
Q psy10609 656 PKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRA-QTHE 699 (715)
Q Consensus 656 pkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~-~~~~ 699 (715)
||||+++.|+++|.|||+|+|+||++|.||||+|.+++|. ..+|
T Consensus 513 pkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~p 557 (686)
T PLN02908 513 PKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERP 557 (686)
T ss_pred cceEEEEEeccCCEeeccceeecccCHhhcCCEEECCCCCcCCCC
Confidence 9999999999999999999999999999999999999987 3454
No 2
>KOG1637|consensus
Probab=100.00 E-value=4.3e-97 Score=786.98 Aligned_cols=424 Identities=74% Similarity=1.299 Sum_probs=402.9
Q ss_pred EecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcCcccc
Q psy10609 41 TLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNGVLWD 120 (715)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (715)
+||||+.+...+|.|||||||.+ |+++++++++|+|||++|||+||+++|| ++++
T Consensus 4 ~Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell----------------------- 58 (560)
T KOG1637|consen 4 VLPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELL----------------------- 58 (560)
T ss_pred ecCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHc-----------------------
Confidence 39999999999999999999999 9999999999999999999999999999 8888
Q ss_pred CCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHH
Q psy10609 121 LDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQ 200 (715)
Q Consensus 121 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~ 200 (715)
+|++.+|..|||||.|||||+|+++.||++||+||++++|||||+ + ++
T Consensus 59 ---------------~f~~~~~k~vfwhssahvlg~a~e~~~g~~lc~Gpp~~~gf~yd~-~-~~--------------- 106 (560)
T KOG1637|consen 59 ---------------KFDDDEGKDVFWHSSAHVLGEALEQEYGAHLCIGPPIEEGFYYDM-L-DE--------------- 106 (560)
T ss_pred ---------------cCCCcccceeeeehhhhHhhHHHHHhcCeeEeeCCCCcCceehhh-h-cc---------------
Confidence 999999999999999999999999999999999999999999999 4 32
Q ss_pred HHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChH
Q psy10609 201 YDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFP 280 (715)
Q Consensus 201 ~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~ 280 (715)
|+.++..
T Consensus 107 -------------------------------------------------------------------------i~~~d~~ 113 (560)
T KOG1637|consen 107 -------------------------------------------------------------------------ISSNDFP 113 (560)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 1222211
Q ss_pred HHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhccc
Q psy10609 281 VMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKY 360 (715)
Q Consensus 281 gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~ 360 (715)
.++ +|++++|++.+|+++++
T Consensus 114 ~~e-----------------------------------------------------------~phi~~tg~ika~k~~~- 133 (560)
T KOG1637|consen 114 SIE-----------------------------------------------------------APHIRHTGKIKAFKILK- 133 (560)
T ss_pred ccc-----------------------------------------------------------cccccccceeeeeeeec-
Confidence 111 15667899999999998
Q ss_pred CcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHH
Q psy10609 361 NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKI 440 (715)
Q Consensus 361 ~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~L 440 (715)
-+|+||.|+ ++|+.+.|++|.+..+||+.||||+|
T Consensus 134 ---------------------------------nss~yw~~~------------sfp~~k~~k~~~~~~~Ea~~rdHRki 168 (560)
T KOG1637|consen 134 ---------------------------------NSSAYWEGD------------SFPDPKQLKEWEKFQEEAKKRDHRKI 168 (560)
T ss_pred ---------------------------------cchhhhccc------------cCCCHHHHHHHHhhchhhhhhhhhhh
Confidence 567899766 88999999999999999999999999
Q ss_pred hhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceE
Q psy10609 441 GREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETY 520 (715)
Q Consensus 441 g~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l 520 (715)
|++++||+|++.+||..+|+|.|+++++.|.++++...+++||+||.||.+.+..||++||||++|.++||+|....+++
T Consensus 169 g~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~ 248 (560)
T KOG1637|consen 169 GKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEF 248 (560)
T ss_pred hhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHH
Q psy10609 521 ALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNV 600 (715)
Q Consensus 521 ~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~i 600 (715)
+|+||+||+|+.+|+++.+||++||+|++.+|..+|+|.||++.||.|+|.|.|+|+||||+++|..+|+..++++...+
T Consensus 249 ~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~v 328 (560)
T KOG1637|consen 249 ALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYV 328 (560)
T ss_pred ccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccC
Q psy10609 601 YSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQ 680 (715)
Q Consensus 601 l~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~ 680 (715)
|.-+|+.|.+.+|+||++++|+.++|++|+..|+++|+..|.+|.+++|+|||||||||+++.|++||.+||+|||||||
T Consensus 329 Y~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQLDFq 408 (560)
T KOG1637|consen 329 YGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQLDFQ 408 (560)
T ss_pred HHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcEEEcCCCceecc
Q psy10609 681 LPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 681 ~~~rf~l~Y~~~dg~~~~~ 699 (715)
+|.||+|.|.++||+.++|
T Consensus 409 LP~rFdL~y~~~~g~~erP 427 (560)
T KOG1637|consen 409 LPIRFDLEYETEDGDLERP 427 (560)
T ss_pred ChhhcCceeecccccccch
Confidence 9999999999999998888
No 3
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.5e-93 Score=827.16 Aligned_cols=502 Identities=45% Similarity=0.834 Sum_probs=470.3
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcC
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNG 116 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (715)
+++|+++||++..++. +||++|||+.+++.+...+++|+|||+++||++|++.||+|+|+
T Consensus 5 mi~i~~~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv------------------- 64 (639)
T PRK12444 5 MIEIKFPDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEII------------------- 64 (639)
T ss_pred CeEEEeCCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEe-------------------
Confidence 4899999999988887 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHH
Q psy10609 117 VLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWD 195 (715)
Q Consensus 117 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (715)
++++++|.++||||++|||+.|++++||. .+.+||++++|||||+..+.+
T Consensus 65 -------------------~~~~~~g~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~---------- 115 (639)
T PRK12444 65 -------------------TIDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSS---------- 115 (639)
T ss_pred -------------------cCCChHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCCC----------
Confidence 99999999999999999999999999987 699999999999999975432
Q ss_pred HHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 196 KLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 196 ~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
+|
T Consensus 116 ------------------------------------------------------------------------------it 117 (639)
T PRK12444 116 ------------------------------------------------------------------------------VN 117 (639)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 56
Q ss_pred CCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 276 TLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 276 ~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
.+++..|+..|.++|+++.|+.+..++.++|.++|++ +.++.++++...+...+++|+||+++|+|+|||+++|+..+
T Consensus 118 ~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~~~D~c~G~hv~sTg~ik 197 (639)
T PRK12444 118 VEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEFVDLCRGPHLPSTGYLK 197 (639)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEECCEEEEcCCcCCCCCCCCc
Confidence 6778889999999999999999999999999999985 34677888754223568889999999999999999999888
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
+|++..+ .+.+|+|+.++..|+|++|.+||++++|++|++..++++
T Consensus 198 ~f~l~~~----------------------------------~~g~~~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~~~~~~ 243 (639)
T PRK12444 198 AFQLTHV----------------------------------SGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAA 243 (639)
T ss_pred eeEEEEE----------------------------------cceEEcCCCCCcceEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 8888773 334788999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
+|||++||++++||++++.++|+++|+|.|+.+++.|++++++.+.++||++|.||+|++.++|++|||++++.++||.+
T Consensus 244 ~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~ 323 (639)
T PRK12444 244 KRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFS 323 (639)
T ss_pred cCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCee
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999944
Q ss_pred eecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHH
Q psy10609 514 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 593 (715)
Q Consensus 514 ~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~ 593 (715)
+.+++.++||||+|++++++|++++.||++||+|++++|+|||+|++|.++||+|+|||+|+|+|+||+++++++|+.++
T Consensus 324 d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~ 403 (639)
T PRK12444 324 EVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSV 403 (639)
T ss_pred cCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999977999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccc
Q psy10609 594 LDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673 (715)
Q Consensus 594 l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~ 673 (715)
++++.++|+.||++|++.+++++++++|+.+.|+.+++.|+++|++.|++|.+++|+|+|||||+|+.+.|..||.||||
T Consensus 404 ~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~ 483 (639)
T PRK12444 404 MAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCG 483 (639)
T ss_pred HHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCcccccCcEEEcCCCceecc
Q psy10609 674 TIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 674 TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
|+|+||++|+||+++|++++|++.+|
T Consensus 484 t~~~d~~~~~~f~l~~~~~~g~~~~P 509 (639)
T PRK12444 484 TIQLDFQMPEKFDLNYIDEKNEKRRP 509 (639)
T ss_pred ceeeecccccccceEEECCCCCcccc
Confidence 99999999999999999999998877
No 4
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-87 Score=753.23 Aligned_cols=434 Identities=49% Similarity=0.875 Sum_probs=417.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHcCCceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeE
Q psy10609 136 KFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQV 215 (715)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I 215 (715)
..+. ++..++|||+||||+.|++++|++ +++||++++|||||++.+.+
T Consensus 20 ~~~~-~~~~~~rhs~ah~l~~av~~l~p~-~~~gp~ie~gfyyd~~~~~~------------------------------ 67 (589)
T COG0441 20 AEDE-EGLEIIRHSCAHVLAQAVKRLYPD-VTIGPVIEEGFYYDFDVKEP------------------------------ 67 (589)
T ss_pred ccCc-cchhhhhhHHHHHHHHHHHHhCCC-ccccCcccceeEEeeccCCC------------------------------
Confidence 4455 999999999999999999999999 99999999999999976543
Q ss_pred EcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCC
Q psy10609 216 TLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQP 295 (715)
Q Consensus 216 ~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P 295 (715)
++.+++..++..|.+++++++|
T Consensus 68 ----------------------------------------------------------~~~~dl~~ie~~m~~i~~~~~~ 89 (589)
T COG0441 68 ----------------------------------------------------------ITPEDLLKIEKEMKEIAKENLP 89 (589)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHHHHhcCc
Confidence 6778888999999999999999
Q ss_pred CceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCC
Q psy10609 296 FERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTP 375 (715)
Q Consensus 296 ~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~ 375 (715)
+.+..++.+++.+.|. +++.++|+.. + ..+++|..|.|+|+|.||++++|+.+ ||+++.
T Consensus 90 ~~~~~~~~e~a~~~f~--~yK~~~i~~~-~-~~~s~y~~~~~~dlc~gph~~~t~~i-~fkl~~---------------- 148 (589)
T COG0441 90 IEREVVSREEARAPFG--PYKAELIDCK-G-HPLSEYSQGEFVDLCRGPHVPSTGKI-AFKLLK---------------- 148 (589)
T ss_pred eEEEEecHHHHHHHhh--hhHHHHHhcC-C-CCceeEecCccccccCCCCCCccceE-EEEEEE----------------
Confidence 9999999999999998 5899999866 4 78899999999999999999999999 888887
Q ss_pred ceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceecc-CCC
Q psy10609 376 TTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE-LSP 454 (715)
Q Consensus 376 ~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~-~~~ 454 (715)
++++||+|+.++.+|+|++|.+|++..+|+.++...+++++||||+||++++||++++ .++
T Consensus 149 ------------------~~~ayw~g~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~ 210 (589)
T COG0441 149 ------------------LAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGP 210 (589)
T ss_pred ------------------ecchhhccCCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCC
Confidence 7888999999999999999999999999999999999999999999999999999995 689
Q ss_pred eeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHH
Q psy10609 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIF 534 (715)
Q Consensus 455 G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~ 534 (715)
|++.|+|+|+.+++.|+++++.....+||++|.||.+.+.++|+.||||++|.++||.+...+++|+|||||||+|+.+|
T Consensus 211 G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~if 290 (589)
T COG0441 211 GLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIF 290 (589)
T ss_pred cceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEc
Q psy10609 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 535 ~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~ 613 (715)
++..+|||+||+|++++|.|||+|.+|.++||.|+|.|||.|+|+||+++|+.+|+..++++...+++.||++ |++.++
T Consensus 291 k~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls 370 (589)
T COG0441 291 KSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLS 370 (589)
T ss_pred hcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCC
Q psy10609 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNV 693 (715)
Q Consensus 614 ~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~d 693 (715)
+++ +++|+++.|+.+++.|+++|+..|++|.+.+|+|||||||+||+++|++||.|||||||+||++|+||+++|+++|
T Consensus 371 ~r~-k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d 449 (589)
T COG0441 371 TRP-KFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED 449 (589)
T ss_pred cCC-cccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCC
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceecc
Q psy10609 694 RAQTHE 699 (715)
Q Consensus 694 g~~~~~ 699 (715)
|++++|
T Consensus 450 ~~~~~P 455 (589)
T COG0441 450 GEKKRP 455 (589)
T ss_pred CCccCC
Confidence 999999
No 5
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=4e-84 Score=748.43 Aligned_cols=442 Identities=40% Similarity=0.743 Sum_probs=415.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCcee
Q psy10609 136 KFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQ 214 (715)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~ 214 (715)
++++.++..++|||++|||+.|++++||. .+.+||++++|||||+.. .+
T Consensus 36 ~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~-~~----------------------------- 85 (614)
T PLN02837 36 TNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDM-EP----------------------------- 85 (614)
T ss_pred eccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecC-CC-----------------------------
Confidence 89999999999999999999999999975 799999999999999974 22
Q ss_pred EEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcC
Q psy10609 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQ 294 (715)
Q Consensus 215 I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~ 294 (715)
+|.+++..|+..|.++|+++.
T Consensus 86 -----------------------------------------------------------lt~edl~~IEk~m~~iI~~n~ 106 (614)
T PLN02837 86 -----------------------------------------------------------LTDKDLKRIKKEMDRIISRNL 106 (614)
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHHHHcCC
Confidence 566788899999999999999
Q ss_pred CCceeecCHHHHHHHHhc--ChhHHHHHhhccCCCcEEEEeeCC-cccccCCccccCcChh--hHHhhcccCcchhhccc
Q psy10609 295 PFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHVRHTGKI--KAFKVTKYNPFKLRILK 369 (715)
Q Consensus 295 P~~r~~vs~eda~~If~~--~~~m~eLI~e~~pi~~v~~y~~~~-~~d~~~~p~~~~t~~~--eA~eLf~~~~~Kl~Ll~ 369 (715)
|+.+..++.++|.++|.+ ++++.++++.. +...+.+|+||+ |+|+|.|||+++|+.. ++++|..
T Consensus 107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~-~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~---------- 175 (614)
T PLN02837 107 PLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELES---------- 175 (614)
T ss_pred CEEEEEecHHHHHHHHHHcCCchhHHHhccC-CCCeEEEEEECCeEEEecCCCCcccccccccceEEEEE----------
Confidence 999999999999999874 34667787643 456788999997 8999999999999987 6666665
Q ss_pred cccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCccee
Q psy10609 370 EKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFF 449 (715)
Q Consensus 370 ~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~ 449 (715)
++++||+|+.++.+|+|++|++||++++|++|++..+|+++|||++||++++||+|
T Consensus 176 ------------------------~~g~ywrg~~~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~ 231 (614)
T PLN02837 176 ------------------------VAGAYWRGDEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSI 231 (614)
T ss_pred ------------------------eehhhhcccccCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCccc
Confidence 77889999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCCh
Q psy10609 450 HEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNC 527 (715)
Q Consensus 450 ~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e 527 (715)
++. |+|+++|+|+|++++++|++++++.+.+.||++|.||+|.+.++|+.||||+.|.++||.+.+ +++.|+||||+|
T Consensus 232 ~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~ 311 (614)
T PLN02837 232 QDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNC 311 (614)
T ss_pred CcCcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCc
Confidence 985 899999999999999999999999999999999999999999999999999999999999865 477899999999
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 528 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 528 ~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
|.|+.+|+++++||++||+|++++|+|||+|.+|.++||+|+|||+|+|+|+||+++|+.+|+..+++++.++++.||++
T Consensus 312 p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~ 391 (614)
T PLN02837 312 PYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFS 391 (614)
T ss_pred HHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987799999999999999999999999999999999999999999999
Q ss_pred -EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccC
Q psy10609 608 -FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFN 686 (715)
Q Consensus 608 -~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~ 686 (715)
+.+.+++++++++|+++.|++++..|+++|+..|++|.+.+|+|||||||+|+++.|++||.|||||+|+||++|+||+
T Consensus 392 ~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~~~f~ 471 (614)
T PLN02837 392 KYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFD 471 (614)
T ss_pred eEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecchhhcC
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCceecccc
Q psy10609 687 LAYVKNVRAQTHELP 701 (715)
Q Consensus 687 l~Y~~~dg~~~~~~~ 701 (715)
++|+|+||++++|..
T Consensus 472 l~y~~~d~~~~~pv~ 486 (614)
T PLN02837 472 ITYVDSNSEKKRPIM 486 (614)
T ss_pred cEEECCCCCccCCEE
Confidence 999999999888743
No 6
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-82 Score=738.45 Aligned_cols=504 Identities=48% Similarity=0.860 Sum_probs=460.4
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcC
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNG 116 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (715)
+++|+++||++..++. +||+.|+|+.+++.....+++|+|||+++||++++..||+|+|+
T Consensus 1 ~~~i~~~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi------------------- 60 (638)
T PRK00413 1 MIKITLPDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEII------------------- 60 (638)
T ss_pred CcEEEeCCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeee-------------------
Confidence 4789999999888887 89999999999999899999999999999999999999999999
Q ss_pred ccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHH
Q psy10609 117 VLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWD 195 (715)
Q Consensus 117 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (715)
++++++|.++||||++|||+.|++++||+ .+.+||++++|||||+..+.+
T Consensus 61 -------------------~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~---------- 111 (638)
T PRK00413 61 -------------------TAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERP---------- 111 (638)
T ss_pred -------------------eccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCCC----------
Confidence 89999999999999999999999999975 799999999999999975432
Q ss_pred HHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 196 KLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 196 ~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
++
T Consensus 112 ------------------------------------------------------------------------------lt 113 (638)
T PRK00413 112 ------------------------------------------------------------------------------FT 113 (638)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 56
Q ss_pred CCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 276 TLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 276 ~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
.+++..++..|.++|.++.|+.+..++.++|.++|++ ++.+.++++.......+++|+||+|+|+|+|||+++|+..+
T Consensus 114 ~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~~d~c~G~hv~~Tg~i~ 193 (638)
T PRK00413 114 PEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIK 193 (638)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCEEEECCCCCCCcccCCc
Confidence 6778889999999999999999999999999999975 34567777653222367777777777777777777777777
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
.|++..+. +.+|.|+.++..|+|++|.+|+++.+|.+|.+..++++
T Consensus 194 ~f~i~~~~----------------------------------~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~e~~ 239 (638)
T PRK00413 194 AFKLLKVA----------------------------------GAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAK 239 (638)
T ss_pred eeEEEEEc----------------------------------ceEEcCCCcchheEEEEeeecCCHHHHHHHHHHHHHhc
Confidence 77666632 22566777778899999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
.+||++||+++++|+|++.++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.++|||+.+.++||.+
T Consensus 240 ~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~ 319 (638)
T PRK00413 240 KRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT 319 (638)
T ss_pred cccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHH
Q psy10609 514 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVG 592 (715)
Q Consensus 514 ~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~ 592 (715)
.+. ++.++||||+||+++++++++.+++++||+|++++|+|||+|+++.++||.|+|||+|+|+|+||.++++.+++.+
T Consensus 320 ~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~e 399 (638)
T PRK00413 320 TESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKK 399 (638)
T ss_pred ecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHH
Confidence 765 7899999999999999999999999999999999999999999987789999999999999999999988888888
Q ss_pred HHHHHHHHHHHcCcE-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccc
Q psy10609 593 ALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQ 671 (715)
Q Consensus 593 ~l~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q 671 (715)
++.++.++|+.||++ |++.+++++++++|+.+.|+++++.|++.|+..|+++...++.++||||++|+.+.|++|+.++
T Consensus 400 ii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (638)
T PRK00413 400 VIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQ 479 (638)
T ss_pred HHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEE
Confidence 999999999999995 9999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCcccccCcEEEcCCCceecccc
Q psy10609 672 CATIQLDFQLPIRFNLAYVKNVRAQTHELP 701 (715)
Q Consensus 672 ~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~ 701 (715)
|+|+|+||++|+|||++|++.+|+...|..
T Consensus 480 l~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~ 509 (638)
T PRK00413 480 CGTIQLDFNLPERFDLTYVGEDGEKHRPVM 509 (638)
T ss_pred eccEeecccChhhcCCEEECCCCCccCcEE
Confidence 999999999999999999999998766633
No 7
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.5e-77 Score=687.86 Aligned_cols=441 Identities=47% Similarity=0.825 Sum_probs=411.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEE
Q psy10609 138 DNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVT 216 (715)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~ 216 (715)
++.+|.++||||++|||+.|++++||+ .+.+||++++|||||+..+.+
T Consensus 1 ~~~~g~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~------------------------------- 49 (575)
T PRK12305 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEP------------------------------- 49 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCC-------------------------------
Confidence 478999999999999999999999985 789999999999999976432
Q ss_pred cCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCC
Q psy10609 217 LPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPF 296 (715)
Q Consensus 217 lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~ 296 (715)
+|.+++..|+..|.++|+++.|+
T Consensus 50 ---------------------------------------------------------it~e~l~~Ie~~m~~lI~~~~pi 72 (575)
T PRK12305 50 ---------------------------------------------------------FTPEDLKKIEKKMKKIIKRGLPF 72 (575)
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHHHhcCCCE
Confidence 56677888999999999999999
Q ss_pred ceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCc
Q psy10609 297 ERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPT 376 (715)
Q Consensus 297 ~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~ 376 (715)
.+..++.++|.++|.++.++.++++.. +...+.+|+||+|+|+|.|||+++|+...+|+|..
T Consensus 73 ~~~~v~~eeA~~~f~~~~~k~~l~~~~-~~~~vri~~ig~~~d~c~Gthv~~T~~i~~f~i~~----------------- 134 (575)
T PRK12305 73 EREEVSREEAREEFANEPYKLELIDDI-PEEGITIYDNGDFEDLCRGPHVPNTKFIKAFKLTS----------------- 134 (575)
T ss_pred EEEEecHHHHHHhCCcChhHHHhhhhc-CCCeEEEEEECCEEEECCCCCCCCccCCceeEEEE-----------------
Confidence 999999999999998766778888754 44578899999999999999999999988888877
Q ss_pred eEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccC-CCe
Q psy10609 377 TTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL-SPG 455 (715)
Q Consensus 377 vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~-~~G 455 (715)
+.+.+|+|+.++..|+|++|.+||++..|++|++..++++.+||++||++++||++++. ++|
T Consensus 135 -----------------~~~~~~~~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G 197 (575)
T PRK12305 135 -----------------VAGAYWRGDEKNPQLQRIYGTAWETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPG 197 (575)
T ss_pred -----------------EcceEECCCCCCcceEEEEEEecCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCc
Confidence 34447889999999999999999999999999999999999999999999999999975 899
Q ss_pred eEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHH
Q psy10609 456 SCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIF 534 (715)
Q Consensus 456 ~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~ 534 (715)
+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.+.++||.+.+ +++.++||||+||++++++
T Consensus 198 ~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~ 277 (575)
T PRK12305 198 LPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIY 277 (575)
T ss_pred ceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999965 4789999999999999999
Q ss_pred HhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEc
Q psy10609 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 535 ~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~ 613 (715)
+++..++++||+|++|+|+|||+|+++.++||.|+|||+|+|+|+||.++++.+++.++++++.++|+.||++ +++.++
T Consensus 278 ~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~ 357 (575)
T PRK12305 278 KSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELS 357 (575)
T ss_pred hcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999999999999999999999999987789999999999999999999999999899999999999999998 999999
Q ss_pred cCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcC
Q psy10609 614 TRP-EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN 692 (715)
Q Consensus 614 ~~~-ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~ 692 (715)
+++ ++++|+.+.|+++++.++++|+..|++|.+++++++|||||+|+++.|++||.|||+|+|+||++|.|||++|++.
T Consensus 358 ~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~ 437 (575)
T PRK12305 358 TREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAE 437 (575)
T ss_pred CCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECC
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccc
Q psy10609 693 VRAQTHELP 701 (715)
Q Consensus 693 dg~~~~~~~ 701 (715)
||...+|..
T Consensus 438 ~~~~~~p~~ 446 (575)
T PRK12305 438 DGKRQRPVM 446 (575)
T ss_pred CCCccCceE
Confidence 999888744
No 8
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=1.3e-72 Score=650.20 Aligned_cols=432 Identities=48% Similarity=0.872 Sum_probs=394.1
Q ss_pred HHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCCcEEec
Q psy10609 147 WHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPA 225 (715)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~ 225 (715)
|||++|||+.|++++|++ .+.+|+++++|||||+..+.+
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~---------------------------------------- 40 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRS---------------------------------------- 40 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCC----------------------------------------
Confidence 899999999999999986 699999999999999864322
Q ss_pred ccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceeecCHHH
Q psy10609 226 KSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKED 305 (715)
Q Consensus 226 ~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~vs~ed 305 (715)
+|.+++..++..|.++|.+++|+.+..++.++
T Consensus 41 ------------------------------------------------~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~ee 72 (563)
T TIGR00418 41 ------------------------------------------------FTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEE 72 (563)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHHHhcCCCEEEEEECHHH
Confidence 56677888999999999999999999999999
Q ss_pred HHHHHh-cChhHHHHHhhccCCCcEEEEeeCC-cccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeC
Q psy10609 306 LIEMFK-YNPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCG 383 (715)
Q Consensus 306 a~~If~-~~~~m~eLI~e~~pi~~v~~y~~~~-~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g 383 (715)
|.++|+ .++++.+++++..+...+++|+||+ |+|+|+|||+++|+..+.|++..+.
T Consensus 73 A~~~f~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~---------------------- 130 (563)
T TIGR00418 73 ALEAFKVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVA---------------------- 130 (563)
T ss_pred HHHHHhccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEec----------------------
Confidence 999997 3446677877532456677888888 8888888888888887777766632
Q ss_pred CeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccC-CCeeEEeCcc
Q psy10609 384 PLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL-SPGSCFFQPK 462 (715)
Q Consensus 384 ~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~ 462 (715)
+.+|.++.++-+|+|++|.+||+.+.|++|++..++++.+||++||++++||++++. ++|+++|+|.
T Consensus 131 ------------~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~ 198 (563)
T TIGR00418 131 ------------GAYWRGDSKNKMLQRIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPK 198 (563)
T ss_pred ------------cceEeEcCCCCceEeeeeccCCCHHHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEecc
Confidence 225556667778999999999999999999999999999999999999999999875 8999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhccc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
|+.++++|++++++.+.++||++|.||+|++.++|.+|||++.+.++||++.+. ++.++||||+|++++++++++.+++
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~ 278 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSY 278 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCCh
Confidence 999999999999999999999999999999999999999999999999999885 6899999999999999999999999
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccC-CCCC
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTR-PEKY 619 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~-~ek~ 619 (715)
++||+|++|+|+|||+|++|+++||+|+|||+|.|+|+||.++++++|+.+++.++.++|+.||++ +++.++++ ++++
T Consensus 279 ~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~ 358 (563)
T TIGR00418 279 RDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDF 358 (563)
T ss_pred HHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhh
Confidence 999999999999999999987799999999999999999998899999999999999999999998 67888887 4578
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 620 LGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 620 ~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
+|+++.|..+.+.++++|+.+|++|+++++.|++|||++||.+.|++|+.|||||+|+||+++.|||+.|++++|...+|
T Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g~~~~p 438 (563)
T TIGR00418 359 IGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCATVQLDFELPERFDLTYVDEDNEEKRP 438 (563)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEeecCCCCceeeceeeeccCCHhhcCCEEECCCCCEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred c
Q psy10609 700 L 700 (715)
Q Consensus 700 ~ 700 (715)
.
T Consensus 439 ~ 439 (563)
T TIGR00418 439 V 439 (563)
T ss_pred E
Confidence 4
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-73 Score=646.94 Aligned_cols=343 Identities=36% Similarity=0.636 Sum_probs=327.1
Q ss_pred CcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccC-cCCCCCccCCCcch--------------hhhhhhh
Q psy10609 348 HTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG-PHNSSTYWEGKADA--------------ESLQRVY 412 (715)
Q Consensus 348 ~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~G-P~vpsT~~~G~lk~--------------f~L~r~~ 412 (715)
.+++++|.++|+++++|.++++. +.++ | ||.++|+|+| |||||| |.++. .+|||+|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~~~~ph~~~t---~~~~~fkl~~~~~~g~~~~~~l~Riy 115 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIEN----NQIV-Y-KGNKVSIIEDKVSISTN---LNPKYFEILNISTHHPNPNEQYVRIR 115 (545)
T ss_pred cccHHHHHHHHhcCcceeeEeec----CcEE-E-ccCceeecCCCCCCCCC---CCcceEEEEEeccCCCccCceeEEEE
Confidence 36899999999999999999973 4444 5 9999999999 999999 44554 4788999
Q ss_pred cccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcc
Q psy10609 413 GISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNV 491 (715)
Q Consensus 413 G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L 491 (715)
|++||++++|++|++..||+++||||+||++++||+|++. ++|+++|+|.|+.++++|++++++.+.++||++|.||+|
T Consensus 116 g~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i 195 (545)
T PRK14799 116 GVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHV 195 (545)
T ss_pred EeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCcc
Confidence 9999999999999999999999999999999999999864 899999999999999999999999999999999999999
Q ss_pred cchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeee
Q psy10609 492 YNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571 (715)
Q Consensus 492 ~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~RE 571 (715)
.+.++|+.||||++|.++||.++.++++++||||+||+|+.+|+++.+||++||+|++++|+|||+|++|+++||+|+||
T Consensus 196 ~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvRe 275 (545)
T PRK14799 196 FKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRG 275 (545)
T ss_pred chHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCcccccccee
Confidence 99999999999999999999997778999999999999999999999999999999999999999999999999999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE---EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccC
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT---FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENP 648 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~---~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~ 648 (715)
|+|+|+|+||+++|+.+|+.++++++.++|+.||++ |.+.+++||++++|+.+.|+++++.++++|++.|++|.+.+
T Consensus 276 F~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~ 355 (545)
T PRK14799 276 FVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKE 355 (545)
T ss_pred EEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEec
Confidence 999999999999999999999999999999999995 99999999999999999999999999999999999999999
Q ss_pred CCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 649 GDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 649 g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
++|+|||||+|+.+.|++||.|||+|+|+||++|+||+++|+++||++++|
T Consensus 356 g~gafygpkiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~~~~~~p 406 (545)
T PRK14799 356 KEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIKKRP 406 (545)
T ss_pred ceeccccCccceEehhhcCchhhhhhhhhhcCcccccceEEEcCCCCCccc
Confidence 999999999999999999999999999999999999999999999988776
No 10
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=3.3e-61 Score=513.74 Aligned_cols=264 Identities=59% Similarity=1.074 Sum_probs=256.8
Q ss_pred hHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe
Q psy10609 436 DHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514 (715)
Q Consensus 436 dH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~ 514 (715)
||++||++++||++++. ++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++||++.+.++||.+.
T Consensus 1 dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~ 80 (298)
T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE 80 (298)
T ss_pred ChhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec
Confidence 79999999999999875 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHH
Q psy10609 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 594 (715)
Q Consensus 515 d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l 594 (715)
++++.++||||+|++++.+++++++|+++||+|++++|+|||+|+++.++||+|+|||+|+|+|+||+++++++|+.+++
T Consensus 81 ~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l 160 (298)
T cd00771 81 EEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVL 160 (298)
T ss_pred cCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHH
Confidence 77789999999999999999999999999999999999999999998779999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcE-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccc
Q psy10609 595 DFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673 (715)
Q Consensus 595 ~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~ 673 (715)
+++.++++.||++ +.+.++++++++.|+.+.|.++++.|+++++..|++|++.+|+|||||||||+++.|++||+||||
T Consensus 161 ~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~ 240 (298)
T cd00771 161 DLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCS 240 (298)
T ss_pred HHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecc
Confidence 9999999999998 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCcccccCcEEEcCCCceecc
Q psy10609 674 TIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 674 TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
|+|+||++|+||||+|+|+||++++|
T Consensus 241 t~qld~~~~~~f~l~y~~~~~~~~~p 266 (298)
T cd00771 241 TIQLDFNLPERFDLTYIGEDGEKKRP 266 (298)
T ss_pred eeEeeccChhhcCCEEEccCCCccCC
Confidence 99999999999999999999999887
No 11
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.3e-51 Score=471.06 Aligned_cols=286 Identities=22% Similarity=0.368 Sum_probs=263.2
Q ss_pred hhhhhhcccCCChhhhHHHHHHHH-----HHhhhhHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHH
Q psy10609 407 SLQRVYGISFPDNKQLKEWEKLQE-----EAAKRDHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRK 480 (715)
Q Consensus 407 ~L~r~~G~~~~~~~~L~~~~~~~e-----e~~~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~ 480 (715)
.|+.+....+.+..+|+.+.+.-. .-..+||++||+++|||++++. ++|++.|+|.|++++++|++++++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~ 243 (613)
T PRK03991 164 ELHDPEEFDFSGYEDLKALVDYEVGKKELVGGEPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVE 243 (613)
T ss_pred CeecccccccCCcHHHHHHHHHHhhccccCCCCCCHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 477777778887777776665211 1136799999999999999885 6999999999999999999999999999
Q ss_pred cCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEecc-CcccCC
Q psy10609 481 RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGV-LHRNEL 559 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~-~FR~E~ 559 (715)
.||++|.||.+.+.++|+.+||+++|.++||.+.+++++++||||+|++++.+|+++++||++||+|++++|+ |||+|+
T Consensus 244 ~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~ 323 (613)
T PRK03991 244 LGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQ 323 (613)
T ss_pred CCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCC
Confidence 9999999999999999999999999999999998878899999999999999999999999999999999999 999999
Q ss_pred CCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy10609 560 SGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLN 638 (715)
Q Consensus 560 ~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~ 638 (715)
+|+++||+|+|||+|+|+|+||.+ +||.+|+..+++++.++++.||++|++.++.. .+.|+.+++.|+++++
T Consensus 324 ~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t-------~df~~~~~~~l~~~l~ 396 (613)
T PRK03991 324 RGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFT-------EDFYEENKDWIVELVK 396 (613)
T ss_pred CCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCH-------HHHhhhHHHHHHHHHH
Confidence 998899999999999999999996 89999999999999999999999999987652 3458888888999999
Q ss_pred hcCCCccc--cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 639 SFGEPWTE--NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 639 ~~g~~~~~--~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
..|++|.+ .+|+++|||||+|+++.|++||.|||||+|+|+++|+|||++|+|+||+.++|
T Consensus 397 ~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~g~~~~P 459 (613)
T PRK03991 397 REGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYP 459 (613)
T ss_pred HcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCCCCEeeC
Confidence 99999876 68999999999999999999999999999999999999999999999999876
No 12
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=1.8e-42 Score=363.11 Aligned_cols=234 Identities=21% Similarity=0.317 Sum_probs=209.2
Q ss_pred HHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhh-hhhCcccccCCCceEEeec
Q psy10609 438 RKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHYSENMFSFDVE 516 (715)
Q Consensus 438 ~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~-~~sG~~~~~~~emy~~~d~ 516 (715)
.+|++++|++|+.+ ++|+++|+|.|++++++|++++++.+.+.||++|.||.|++.++| ..+||+++|.++||++.+.
T Consensus 7 ~~l~~~~~~~d~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~ 85 (261)
T cd00778 7 TEVITKAELIDYGP-VKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHG 85 (261)
T ss_pred HHHHHHhCCcccCC-CCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEec
Confidence 46789999998864 579999999999999999999999999999999999999999998 5699999999999999874
Q ss_pred C-----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHH
Q psy10609 517 N-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEI 590 (715)
Q Consensus 517 ~-----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~ 590 (715)
+ ++++||||+|++++.++++++.||++||+|++++++|||+|.+++ +||+|+|||+|+|+|+ ||+++|+.+++
T Consensus 86 ~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~-~Gl~R~reF~~~d~h~~~~~~e~~~~~~ 164 (261)
T cd00778 86 GLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTT-RPFLRTREFLWQEGHTAHATEEEAEEEV 164 (261)
T ss_pred CCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCC-CceeEeeeeeeeceeeccCCHHHHHHHH
Confidence 2 579999999999999999999999999999999999999999997 8999999999999996 78889999999
Q ss_pred HHHHHHHHHHHHHc-CcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCc
Q psy10609 591 VGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 669 (715)
Q Consensus 591 ~~~l~~~~~il~~L-Gl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~ 669 (715)
.++++++.++|+.| ||+|++.....++++. |+.+.+++|+.+. .||.
T Consensus 165 ~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~------------------------------~a~~~~~ie~~~p--~~~~ 212 (261)
T cd00778 165 LQILDLYKEFYEDLLAIPVVKGRKTEWEKFA------------------------------GADYTYTIEAMMP--DGRA 212 (261)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCCccccCC------------------------------CCccceEEEEEee--CCCE
Confidence 99999999999999 9998887554334443 3444557888887 6999
Q ss_pred cccccc-eeccCcccccCcEEEcCCCceecccccccccCC
Q psy10609 670 HQCATI-QLDFQLPIRFNLAYVKNVRAQTHELPRTLSDIR 708 (715)
Q Consensus 670 ~q~~Ti-QlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~ 708 (715)
|++||+ |+|+++|+||+|+|+|+||+.++| ++ +.++
T Consensus 213 ~ev~s~~~l~~~~s~r~~i~y~~~~g~~~~~--h~-~~~g 249 (261)
T cd00778 213 LQSGTSHNLGQNFSKAFDIKYQDKDGQKEYV--HQ-TSWG 249 (261)
T ss_pred EEEEeccccccccchhcCCEEECCCCCCcCc--EE-eccc
Confidence 999999 799999999999999999998776 55 6655
No 13
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=1.9e-42 Score=369.17 Aligned_cols=248 Identities=20% Similarity=0.408 Sum_probs=208.9
Q ss_pred hHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh
Q psy10609 422 LKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 496 (715)
Q Consensus 422 L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el 496 (715)
++.|+..+. .+++|||++||++++||++++ .|+|+++|+|.|++++++|++++++.+.+.||++|.||.|.+.++
T Consensus 5 ~~~~g~~~~~~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l 84 (297)
T cd00770 5 IRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEV 84 (297)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHH
Confidence 455665555 678999999999999999875 368899999999999999999999999999999999999999999
Q ss_pred hhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeEe
Q psy10609 497 WQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQ 573 (715)
Q Consensus 497 ~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFt 573 (715)
|++||||+.|.++||++.+ ++++|+||+|++++.++++++.|+++||+|++++|+|||+|.++ .++||+|+|||+
T Consensus 85 ~~~sg~~~~~~~~~f~v~~--~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~ 162 (297)
T cd00770 85 MEGTGQLPKFDEQLYKVEG--EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFE 162 (297)
T ss_pred HhhcCcCccChhcccEecC--CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeee
Confidence 9999999999999999965 68999999999999999999999999999999999999999984 378999999999
Q ss_pred EeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCC-----CHHHHHHHHHHHHHHHHhcCCCccccC
Q psy10609 574 QDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLG-----ELEVWNKAEKQLEASLNSFGEPWTENP 648 (715)
Q Consensus 574 q~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~g-----d~e~w~~a~~~L~~~L~~~g~~~~~~~ 648 (715)
|+|+|+||.++++++++.++++++.++++.|||+|++......+...+ +.|.| .|
T Consensus 163 ~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~--------------------~p 222 (297)
T cd00770 163 KVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAW--------------------MP 222 (297)
T ss_pred eeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheeehee--------------------cC
Confidence 999999999999999999999999999999999988765433221111 22333 23
Q ss_pred CCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCC-CceecccccccccCC
Q psy10609 649 GDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNV-RAQTHELPRTLSDIR 708 (715)
Q Consensus 649 g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~d-g~~~~~~~~~~~~~~ 708 (715)
+++.| +...+|+.+ .||+ ++||+++|.|++ |++++ ++|+++.+
T Consensus 223 ~~~~~-------------~e~~s~s~~-~d~~-s~r~~i~y~~~~~~~~~~--~~~~~~~~ 266 (297)
T cd00770 223 GQGKY-------------REISSCSNC-TDFQ-ARRLNIRYRDKKDGKKQY--VHTLNGTA 266 (297)
T ss_pred CCCCe-------------EEEEEccCc-cChh-hhhcCcEEecCCCCCeee--eeEecccc
Confidence 22222 122445554 7998 899999999995 66644 57877654
No 14
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-41 Score=380.11 Aligned_cols=260 Identities=20% Similarity=0.278 Sum_probs=229.0
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+.+++.++|+.|.+. ++++ ..++|+++|+|.|++++++|++++++++.++||++|.||.|.+.++|+.+|||+.|.+
T Consensus 15 ~~~~~~~~~~ll~r~-g~~~--~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~ 91 (439)
T PRK12325 15 PKEAEIVSHRLMLRA-GMIR--QQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGK 91 (439)
T ss_pred ccccchHHHHHHHHc-CCcc--ccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccch
Confidence 446788999999998 6653 4589999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.+.+. +++|+||||+|+.++.++++++.||++||+|+||+|+|||+|.++. +||+|+|||+|.|+|+||.+ +++
T Consensus 92 emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~-~GL~R~reF~~~D~h~f~~~~~~a 170 (439)
T PRK12325 92 EMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPR-FGVMRGREFLMKDAYSFDLDEEGA 170 (439)
T ss_pred hheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCC-CCccccceEeEeccEEEeCCHHHH
Confidence 99999775 7899999999999999999999999999999999999999998885 89999999999999999887 699
Q ss_pred HHHHHHHHHHHHHHHHHcCcE-EEEEEccCCC------CC----------------------CCCHHHHHHHHHHHHHHH
Q psy10609 587 GDEIVGALDFLRNVYSIFGFT-FNLRLSTRPE------KY----------------------LGELEVWNKAEKQLEASL 637 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~e------k~----------------------~gd~e~w~~a~~~L~~~L 637 (715)
.+++.++++++.++|+.|||+ +.+.+++++. .| .|+.+.|+. ..|+++|
T Consensus 171 ~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~~l 248 (439)
T PRK12325 171 RHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQPIV 248 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH--HHHHHHH
Confidence 999999999999999999999 4555655541 11 133445776 7899999
Q ss_pred HhcCCCc---cccCCCCccc-cceeeEEeec--CCCCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 638 NSFGEPW---TENPGDGAFY-GPKIDITITD--ALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 638 ~~~g~~~---~~~~g~~afY-gpkid~~~~D--~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
+..+..| ...+++++|| ||++++...+ ..|+.|++||. +|++|+++|+|+||+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~-----ys~~f~~~y~d~~g~~~~i 311 (439)
T PRK12325 249 DEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTK-----YSEPMNAKVQGPDGKEVPV 311 (439)
T ss_pred hhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCccc-----ccHhcCCEEECCCCCEEeE
Confidence 9887766 4567788999 9999998887 45888888886 5999999999999998665
No 15
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-41 Score=376.45 Aligned_cols=249 Identities=20% Similarity=0.362 Sum_probs=215.9
Q ss_pred hhHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccch
Q psy10609 421 QLKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNV 494 (715)
Q Consensus 421 ~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~ 494 (715)
+++.|+..+. +++++||++||++++|||+++ .|+|+++|+|.|++|+++|++++.+.+. +.||++|.||.|.+.
T Consensus 122 ~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~ 201 (425)
T PRK05431 122 EVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNE 201 (425)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccH
Confidence 3455555444 557899999999999999986 3788999999999999999999999988 999999999999999
Q ss_pred hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeee
Q psy10609 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRR 571 (715)
Q Consensus 495 el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~RE 571 (715)
++|.+|||+++|.++||++.+ ++++|+||+|++++.++++++.||++||+|++++|+|||+|+++ .++||+|+||
T Consensus 202 ~~~~~~G~~~~f~~~ly~i~~--~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~q 279 (425)
T PRK05431 202 ESMYGTGQLPKFEEDLYKIED--DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQ 279 (425)
T ss_pred HHHhhcCccccchhhceEecC--CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeee
Confidence 999999999999999999964 68999999999999999999999999999999999999999976 3789999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE-EccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTE 646 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~-l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~ 646 (715)
|+|+|+|+||++++|.+++.++++++.++|+.|||||+++ ++++. .....|.|+|
T Consensus 280 F~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w-------------------- 339 (425)
T PRK05431 280 FDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVW-------------------- 339 (425)
T ss_pred eeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHh--------------------
Confidence 9999999999999999999999999999999999999885 44432 2344577777
Q ss_pred cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcC-CCceecccccccccCC
Q psy10609 647 NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN-VRAQTHELPRTLSDIR 708 (715)
Q Consensus 647 ~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~-dg~~~~~~~~~~~~~~ 708 (715)
.|+++.| +...+|+.+ .||| ++|++++|.++ +|+.+ +++|||+.+
T Consensus 340 ~p~~~~~-------------~ev~s~snc-~d~q-srr~~i~~~~~~~~~~~--~~htln~t~ 385 (425)
T PRK05431 340 LPSQNTY-------------REISSCSNC-TDFQ-ARRANIRYRDEGDGKPE--LVHTLNGSG 385 (425)
T ss_pred CcccCCe-------------eEEEEecCc-cchh-hhhcCcEEecCCCCcee--EEEEeCCch
Confidence 4666666 122567777 7998 99999999998 77654 369999874
No 16
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=1.1e-40 Score=370.04 Aligned_cols=250 Identities=20% Similarity=0.375 Sum_probs=211.3
Q ss_pred hhHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 421 QLKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 421 ~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
+++.|+..+. +++++||++||+++|||++++ .|+|+++|+|.|++++++|++++.+.+.+.||++|.||.|.+.+
T Consensus 125 ~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~ 204 (418)
T TIGR00414 125 EVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEE 204 (418)
T ss_pred EeeecCCCCCCCCCCCCHHHHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 3455554443 567899999999999999976 36889999999999999999999999999999999999999999
Q ss_pred hhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeE
Q psy10609 496 LWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRF 572 (715)
Q Consensus 496 l~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REF 572 (715)
+|.+||||++|.++||.+.+ ++++|+||+|++++.++++++.|+++||+|++++|+|||+|+++ .++||+|+|||
T Consensus 205 ~~~~~G~~~~f~~~~y~i~~--~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF 282 (418)
T TIGR00414 205 SLDGTGQLPKFEEDIFKLED--TDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQF 282 (418)
T ss_pred HHhhcCccccccccceEecC--CCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccce
Confidence 99999999999999999864 57999999999999999999999999999999999999999974 36899999999
Q ss_pred eEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCC-----CCHHHHHHHHHHHHHHHHhcCCCcccc
Q psy10609 573 QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYL-----GELEVWNKAEKQLEASLNSFGEPWTEN 647 (715)
Q Consensus 573 tq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~-----gd~e~w~~a~~~L~~~L~~~g~~~~~~ 647 (715)
+|+|+|+||+++++.+++.++++++.++|+.|||||++.....++... .|.|+| .
T Consensus 283 ~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w--------------------~ 342 (418)
T TIGR00414 283 NKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVW--------------------M 342 (418)
T ss_pred eeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCccccccCHhhhhhHHHh--------------------C
Confidence 999999999999999999999999999999999999875433322111 245555 3
Q ss_pred CCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccCC
Q psy10609 648 PGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDIR 708 (715)
Q Consensus 648 ~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~ 708 (715)
|+.+.| +...+|+.+ .||| ++||+++|.|++|++.. +++|||+.+
T Consensus 343 p~~~~~-------------~ev~s~sn~-~d~q-srr~~i~y~~~~~~~~~-~vh~ln~~~ 387 (418)
T TIGR00414 343 PGQNTY-------------REISSCSNC-TDFQ-ARRLNIRYKDKNKGKNK-YVHTLNGTA 387 (418)
T ss_pred CCcCce-------------EEEEEEcCc-chHh-HHhCCcEEECCCCCceE-EEEeecCcc
Confidence 555444 122567766 8998 89999999998755433 368998875
No 17
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=3.3e-40 Score=365.78 Aligned_cols=265 Identities=16% Similarity=0.277 Sum_probs=220.4
Q ss_pred CCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceecc---C-CCeeEEeCcccHHHHH
Q psy10609 393 HNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE---L-SPGSCFFQPKGAFIYN 468 (715)
Q Consensus 393 ~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~---~-~~G~~~~lP~G~~l~~ 468 (715)
-||-- |+-++-.+++++|..+... +++||++||++++||||++ + |+++++|.+.|++|.+
T Consensus 115 ~VP~G---~de~~n~~vr~~g~~~~~~-------------~~~dH~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~ 178 (448)
T PLN02678 115 SVPVS---NDEANNAVVRTWGEKRQEP-------------KLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQ 178 (448)
T ss_pred cCCCC---CCcCCCEEEEEEcCCCCCC-------------CCCCHHHHHhhccCccchhhhhhcCceeEEECCHHHHHHH
Confidence 36654 4555556677777654321 5789999999999999985 3 3445656669999999
Q ss_pred HHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEE
Q psy10609 469 TLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRM 548 (715)
Q Consensus 469 ~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl 548 (715)
+|++|+.+.+.+.||++|.||.|.+.++|.+||||++|.++||++.+.+++++|.||+|++.+.++++.+.++++||+|+
T Consensus 179 AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~ 258 (448)
T PLN02678 179 ALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPKELPIRY 258 (448)
T ss_pred HHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHHhCCcee
Confidence 99999999999999999999999999999999999999999999976666889999999999999999999999999999
Q ss_pred EEeccCcccCCCC---CCCCcceeeeEeEeeEEEEeCchh--HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC-----C
Q psy10609 549 ADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE-----K 618 (715)
Q Consensus 549 ~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~~~eq--a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e-----k 618 (715)
+++|+|||+|+++ .++||+|+|||+|+|++.||.|++ |.+++++|++.++++|+.|||||++..-..++ .
T Consensus 259 ~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~ 338 (448)
T PLN02678 259 AGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAA 338 (448)
T ss_pred EEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCCchh
Confidence 9999999999983 579999999999999999999998 99999999999999999999999985433321 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCC-cee
Q psy10609 619 YLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVR-AQT 697 (715)
Q Consensus 619 ~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg-~~~ 697 (715)
...|.|+| .|+.+.| +..++||.+ .||| ++|.+|+|.+.++ ...
T Consensus 339 ~~yDiE~W--------------------~P~~~~y-------------~EvsS~Snc-~D~Q-aRRl~iryr~~~~~~~~ 383 (448)
T PLN02678 339 KKYDLEAW--------------------FPASKTY-------------RELVSCSNC-TDYQ-SRRLEIRYGQKKSNEQT 383 (448)
T ss_pred hceeeEee--------------------ccccCCc-------------eEEeeeccc-ccHh-hhcccceecccccCCCC
Confidence 12367777 5777777 233789998 8999 9999999997731 112
Q ss_pred cccccccccCC
Q psy10609 698 HELPRTLSDIR 708 (715)
Q Consensus 698 ~~~~~~~~~~~ 708 (715)
.-++|||||-+
T Consensus 384 ~~~vHTLNgt~ 394 (448)
T PLN02678 384 KQYVHLLNSTL 394 (448)
T ss_pred ceeEEecCCch
Confidence 34579999853
No 18
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=9.2e-40 Score=363.77 Aligned_cols=250 Identities=22% Similarity=0.343 Sum_probs=209.9
Q ss_pred hhHHHHHHHH-HHhhhhHHHHhhhcCcceeccC--CCeeEE-eCcc-cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 421 QLKEWEKLQE-EAAKRDHRKIGREQELFFFHEL--SPGSCF-FQPK-GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 421 ~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~--~~G~~~-~lP~-G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
.++.|+.+++ +++++||++||++++||||+.. .+|.++ |+|. ++++.++|++|+++.+.+.||++|.||.|++.+
T Consensus 185 ~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~ 264 (502)
T PLN02320 185 VRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSS 264 (502)
T ss_pred EEEecCCCCCCCCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHH
Confidence 3455665555 5678999999999999999873 367777 4666 455779999999999999999999999999999
Q ss_pred hhhhhCcccccCC-CceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC--C-CCCCcceeee
Q psy10609 496 LWQTSGHWAHYSE-NMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS--G-ALTGLTRVRR 571 (715)
Q Consensus 496 l~~~sG~~~~~~~-emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~--~-~l~GL~R~RE 571 (715)
+|.+|||++.+.+ ++|.+. +++++|.||+|.++..++.+.+.++++||+|++++|+|||+|++ | .++||+|+||
T Consensus 265 l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQ 342 (502)
T PLN02320 265 VVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQ 342 (502)
T ss_pred HHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeee
Confidence 9999999888766 677664 56899999999888888889999999999999999999999999 6 5899999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE-EccCCC----CCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRPE----KYLGELEVWNKAEKQLEASLNSFGEPWTE 646 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~-l~~~~e----k~~gd~e~w~~a~~~L~~~L~~~g~~~~~ 646 (715)
|+|+|+|+||.|+|+++|+++|++++.++|+.|||+|++. ++++.- ....|.|+|
T Consensus 343 F~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW-------------------- 402 (502)
T PLN02320 343 FSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAW-------------------- 402 (502)
T ss_pred eecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEE--------------------
Confidence 9999999999999999999999999999999999997764 565531 112366777
Q ss_pred cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcC--------CCc---eecccccccccC
Q psy10609 647 NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKN--------VRA---QTHELPRTLSDI 707 (715)
Q Consensus 647 ~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~--------dg~---~~~~~~~~~~~~ 707 (715)
.||.+.| +...+||++ .||| ++|.+|+|.+. +|+ ....++|||||-
T Consensus 403 ~P~~~~y-------------~EvsS~SNc-~DfQ-aRRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNgT 459 (502)
T PLN02320 403 MPGLGRY-------------GEISSASNC-TDYQ-SRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNAT 459 (502)
T ss_pred ecCCCcE-------------EEEeeecch-hhHh-hhcccceeccccccccccccccccCCCcceeEecccc
Confidence 6888888 223789999 9999 99999999975 343 134568999984
No 19
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.6e-38 Score=357.19 Aligned_cols=230 Identities=18% Similarity=0.290 Sum_probs=207.3
Q ss_pred hhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh-hhCcccccCCCceEE
Q psy10609 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ-TSGHWAHYSENMFSF 513 (715)
Q Consensus 435 rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~-~sG~~~~~~~emy~~ 513 (715)
..|.+|+++++|+|+.+ .+|+++|+|.|++++++|++++++.+.+.||++|.||.|++.++|. .+||++.|.++||.+
T Consensus 16 ~w~~~~~~~~~l~d~~~-v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v 94 (477)
T PRK08661 16 EWYNDVVKKAELADYSP-VKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWV 94 (477)
T ss_pred HHHHHHHHHccCcccCC-CCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEE
Confidence 45888999999999877 6899999999999999999999999999999999999999999996 489999999999999
Q ss_pred eec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE-eCchhHH
Q psy10609 514 DVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTVEQIG 587 (715)
Q Consensus 514 ~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if-~~~eqa~ 587 (715)
.+. ++.++||||+|+.++.+++++++||++||+|++|+++|||+|.++ +||+|+|||+|.|+|+| +++++|.
T Consensus 95 ~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~--rgl~R~rEF~~~E~h~~~~~~eea~ 172 (477)
T PRK08661 95 THGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKT--RPFLRTREFLWQEGHTAHATEEEAE 172 (477)
T ss_pred EccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCC--CCcceeeeEEEcceeeeeCCHHHHH
Confidence 764 368999999999999999999999999999999999999999994 69999999999999985 6668999
Q ss_pred HHHHHHHHHHHHHH-HHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCC
Q psy10609 588 DEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL 666 (715)
Q Consensus 588 ~E~~~~l~~~~~il-~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~ 666 (715)
+++..+++++.+++ +.||||+.+...+ .|++ ..|+.|.+.+|+.+.|
T Consensus 173 ~e~~~~l~~y~~i~~~~Lglp~~~~~~~----------~~ek--------------------f~ga~~~~~ie~~~~d-- 220 (477)
T PRK08661 173 EETLEMLEIYKEFFEDYLAIPVIIGKKT----------EWEK--------------------FAGADYTYTIEAMMPD-- 220 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecC----------hHHh--------------------hCCCcceeEEEEEeCC--
Confidence 99999999999999 9999997765422 1321 1357778888988877
Q ss_pred CCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 667 KRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 667 gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
||.+|+||+| ||+++|+|||++|.|+||+.++|
T Consensus 221 gr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v 254 (477)
T PRK08661 221 GKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYV 254 (477)
T ss_pred CCEEEEEEecccccchhHhcCCEEECCCCCEeee
Confidence 8999999996 99999999999999999999887
No 20
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2.7e-37 Score=324.31 Aligned_cols=234 Identities=16% Similarity=0.194 Sum_probs=203.0
Q ss_pred HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC-CCceEEeecC
Q psy10609 439 KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS-ENMFSFDVEN 517 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~-~emy~~~d~~ 517 (715)
+|..+.||++..+ ++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++|+++.+. ++||.+.+.+
T Consensus 8 ~~l~~ag~~~~~~-~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~ 86 (264)
T cd00772 8 EHIGKAELADQGP-GRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAG 86 (264)
T ss_pred HHHHhcCCccccC-CCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCC
Confidence 4456668887643 6899999999999999999999999999999999999999999999999998854 8999998753
Q ss_pred -----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE-eCchhHHHHHH
Q psy10609 518 -----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTVEQIGDEIV 591 (715)
Q Consensus 518 -----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if-~~~eqa~~E~~ 591 (715)
++++||||+|++++.++++++.|+++||+|++|+++|||+|+++. +||+|+|||+|+|+|+| ++++++++|+.
T Consensus 87 ~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~-~Gl~R~reF~~~e~~~~~~~~e~a~~e~~ 165 (264)
T cd00772 87 DEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPR-FGFLRAREFIMKDGHSAHADAEEADEEFL 165 (264)
T ss_pred CCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCC-CCcceeeEEEEeeeEEecCCHHHHHHHHH
Confidence 789999999999999999999999999999999999999997775 79999999999999999 56789999999
Q ss_pred HHHHHHHHHHHHcC-cEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcc
Q psy10609 592 GALDFLRNVYSIFG-FTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPH 670 (715)
Q Consensus 592 ~~l~~~~~il~~LG-l~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~ 670 (715)
.+++++.++++.|| +||++..++++++++|+... .|+++..+.|+..
T Consensus 166 ~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~--------------------------------~d~e~~~p~~~~~ 213 (264)
T cd00772 166 NMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKS--------------------------------REFEALMEDGKAK 213 (264)
T ss_pred HHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCC--------------------------------EEEEEECCCCCEe
Confidence 99999999999999 99999998888877766533 3556666667777
Q ss_pred ccccce--eccCcccccC--cEEEcCCCceecccccccccCCCC
Q psy10609 671 QCATIQ--LDFQLPIRFN--LAYVKNVRAQTHELPRTLSDIRPS 710 (715)
Q Consensus 671 q~~TiQ--lDf~~~~rf~--l~Y~~~dg~~~~~~~~~~~~~~~~ 710 (715)
++++.+ .|+| +++|+ |+|.|++|+.+++ +| |+++-+
T Consensus 214 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~--~~-n~~gi~ 253 (264)
T cd00772 214 QAETGHIFGEGF-ARAFDLKAKFLDKDGKEKFF--EM-GCWGIG 253 (264)
T ss_pred EEEeeeeccCCc-hhhcCCccEEECCCCCEEEE--Ee-ccccch
Confidence 777766 3666 99777 9999999987655 66 877643
No 21
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=7.1e-38 Score=352.96 Aligned_cols=238 Identities=20% Similarity=0.340 Sum_probs=208.7
Q ss_pred CChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh
Q psy10609 417 PDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 496 (715)
Q Consensus 417 ~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el 496 (715)
+.++++.+|.. +|..+.+|+++.+ .+|+++|+|.|+.+++.|++++++.++++||++|.||.|++.++
T Consensus 3 ~~~~~f~~wy~-----------~l~~~~~li~~~~-~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~ 70 (472)
T TIGR00408 3 SKMQDFSEWYH-----------QILEKAEIIDYYP-VKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESE 70 (472)
T ss_pred cccccHHHHHH-----------HHHHHcCCccccC-CCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHH
Confidence 34567777874 3567789988844 58999999999999999999999999999999999999999999
Q ss_pred hhhh-CcccccCCCceEEeecC-----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceee
Q psy10609 497 WQTS-GHWAHYSENMFSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVR 570 (715)
Q Consensus 497 ~~~s-G~~~~~~~emy~~~d~~-----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~R 570 (715)
|.++ +|+++|.++||.+.+.+ ++++||||+|++++.+|+++++||++||+|++|+++|||+|.++. +||+|+|
T Consensus 71 ~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~-~gl~R~r 149 (472)
T TIGR00408 71 LAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHT-RPFLRTR 149 (472)
T ss_pred HHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCC-CCcceee
Confidence 9875 59999999999998753 789999999999999999999999999999999999999999986 8999999
Q ss_pred eEeEeeEE-EEeCchhHHHHHHHHHHHHHHHHH-HcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccC
Q psy10609 571 RFQQDDAH-IFCTVEQIGDEIVGALDFLRNVYS-IFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENP 648 (715)
Q Consensus 571 EFtq~d~~-if~~~eqa~~E~~~~l~~~~~il~-~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~ 648 (715)
||+|.|+| +||++++|.+++..+++++.++++ .||||+.+...+..+++.|+.
T Consensus 150 EF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~------------------------- 204 (472)
T TIGR00408 150 EFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAE------------------------- 204 (472)
T ss_pred eeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCcc-------------------------
Confidence 99999999 578889999999999999999998 999998776544334443433
Q ss_pred CCCccccceeeEEeecCCCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 649 GDGAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 649 g~~afYgpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
+...+|+.+.| ||.+|+||+| ||+++|+||+|+|.|+||+.++|
T Consensus 205 -----~~~~~e~~~~d--gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~ 249 (472)
T TIGR00408 205 -----YTWAFETIMPD--GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYA 249 (472)
T ss_pred -----ceEEEeEEEcC--CCEEEEeeeecccccccHhcCCEEECCCCCEEee
Confidence 33346666666 7999999999 99999999999999999988766
No 22
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=5.1e-37 Score=320.86 Aligned_cols=233 Identities=17% Similarity=0.264 Sum_probs=194.2
Q ss_pred HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-C
Q psy10609 439 KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-N 517 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~ 517 (715)
+|..+.|+++ ..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+++||++.+.++||.+.+. +
T Consensus 8 ~l~~~ag~~~--~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~ 85 (255)
T cd00779 8 KLLLRAGFIR--QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHG 85 (255)
T ss_pred HHHHHcCCcc--cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCC
Confidence 3444556653 457999999999999999999999999999999999999999999999999999999999999875 6
Q ss_pred ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHH
Q psy10609 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDF 596 (715)
Q Consensus 518 ~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~ 596 (715)
++++||||+|+.++.++++++.|+++||+|++|+|+|||+|.++. +||+|+|||+|+|+|+||.+ ++|++++.+++.+
T Consensus 86 ~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~-~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 86 KEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred CeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCC-CceeeeeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999996554 79999999999999999997 5999999999999
Q ss_pred HHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccccce
Q psy10609 597 LRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 676 (715)
Q Consensus 597 ~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQ 676 (715)
+.++|+.|||+|++..+++ +.+|.... -+.|+...-+.++..++|++.
T Consensus 165 ~~~il~~Lgl~~~~~~~~~--~~~gg~~s------------------------------~~~~~e~~~~~~~~~e~~s~~ 212 (255)
T cd00779 165 YSRIFKRLGLPFVKVEADS--GAIGGSLS------------------------------HEFHVLSPLKITKGIEVGHIF 212 (255)
T ss_pred HHHHHHHcCCcEEEEEecC--CCCCCccc------------------------------EEEEEEEecCCCCeEEEEeee
Confidence 9999999999998877543 22333211 112333322334456666666
Q ss_pred --eccCcccccCcEEEcCCCceecccccccccCCCC
Q psy10609 677 --LDFQLPIRFNLAYVKNVRAQTHELPRTLSDIRPS 710 (715)
Q Consensus 677 --lDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~~~ 710 (715)
.|+| ++||+|+|.|++|+.+++ +| |+++-+
T Consensus 213 ~lg~~~-sr~~~i~~~~~~~~~~~~--~~-~~~gi~ 244 (255)
T cd00779 213 QLGTKY-SKALGATFLDENGKPKPL--EM-GCYGIG 244 (255)
T ss_pred ecchhH-HHhcCcEEECCCCCEEee--Ee-cCccch
Confidence 3666 999999999999988666 55 877643
No 23
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-37 Score=334.42 Aligned_cols=253 Identities=22% Similarity=0.398 Sum_probs=222.8
Q ss_pred CCChhhhHHHHHHH---HHHhhhhHHHHhhhcCcceeccC----CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEec
Q psy10609 416 FPDNKQLKEWEKLQ---EEAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVS 488 (715)
Q Consensus 416 ~~~~~~L~~~~~~~---ee~~~rdH~~Lg~~l~Lf~~~~~----~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~t 488 (715)
-.++..++.|+..+ -++++++|++||..+++.||+.+ |+|+++|.+.|++|.++|.+|+.+.+.+.||+++.+
T Consensus 119 e~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~ 198 (429)
T COG0172 119 EDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLP 198 (429)
T ss_pred cccceEEEEEecCccccccCCcchHHHHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeC
Confidence 34566777788764 37789999999999999999973 688999999999999999999999999999999999
Q ss_pred CcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCC
Q psy10609 489 PNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTG 565 (715)
Q Consensus 489 P~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~G 565 (715)
|.|++.+++.++|++++|.++||++.+. .|+|.||+|.+++.++++++.+..+||++++.+++|||.|++. .++|
T Consensus 199 P~lv~~e~m~gtgqlpkf~e~~y~v~~~--~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrG 276 (429)
T COG0172 199 PYLVNLESMFGTGQLPKFEEDLYKVEDP--DLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRG 276 (429)
T ss_pred ceeecHHHhhccCCCCCCcccceEecCC--CEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccc
Confidence 9999999999999999999999999775 8999999999999999999998889999999999999999986 2699
Q ss_pred cceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEE-ccCCCCC----CCCHHHHHHHHHHHHHHHHhc
Q psy10609 566 LTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRL-STRPEKY----LGELEVWNKAEKQLEASLNSF 640 (715)
Q Consensus 566 L~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l-~~~~ek~----~gd~e~w~~a~~~L~~~L~~~ 640 (715)
|+|+|||.++|+..||.|+++..++++|+..++++++.|+|||++.. ++.+-+| ..|.|+|
T Consensus 277 liRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvW-------------- 342 (429)
T COG0172 277 LIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVW-------------- 342 (429)
T ss_pred eeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEE--------------
Confidence 99999999999999999999999999999999999999999988864 5543211 2366667
Q ss_pred CCCccccCCCCccccceeeEEeecCCCCc-cccccceeccCcccccCcEEEc-CCCceecccccccccCC
Q psy10609 641 GEPWTENPGDGAFYGPKIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVK-NVRAQTHELPRTLSDIR 708 (715)
Q Consensus 641 g~~~~~~~g~~afYgpkid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~-~dg~~~~~~~~~~~~~~ 708 (715)
.|+.+.| |+ ++||++ .||| ++||+++|.+ .+|+. -++|||||.+
T Consensus 343 ------lP~q~~y--------------rEisScSnc-~DfQ-aRR~~~Ryr~~~~~k~--~~vhTLNGsg 388 (429)
T COG0172 343 ------LPGQNKY--------------REISSCSNC-TDFQ-ARRLNIRYRDKEEGKR--EFVHTLNGSG 388 (429)
T ss_pred ------ecCCCCc--------------eeeeeeecc-ccHH-HHHHhcccccccCCCc--EEEEeccchH
Confidence 5777777 55 889999 8999 9999999986 55555 3479999975
No 24
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=6.7e-34 Score=292.29 Aligned_cols=212 Identities=23% Similarity=0.358 Sum_probs=194.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-----CceEEEecCChHHHHHHHHhh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHR 537 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~ 537 (715)
|+.++++|++++++.+.++||++|.||.|++.++|..+||++.+.++||.+.+. ++.++||||+|++++.+++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 688999999999999999999999999999999999999999999999999875 478999999999999999999
Q ss_pred hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC
Q psy10609 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE 617 (715)
Q Consensus 538 ~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e 617 (715)
..++++||+|++++|+|||+|.++. +|+.|+|||+|.|+|+||.++++.++..++++++.++++.||+++++.+++.++
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~-~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~~~~ 159 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPF 159 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCC-CCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEccChh
Confidence 9998999999999999999999987 799999999999999999998888888999999999999999999999987754
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCC-CCccccccceeccCcccccCcEEEcCCCce
Q psy10609 618 KYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL-KRPHQCATIQLDFQLPIRFNLAYVKNVRAQ 696 (715)
Q Consensus 618 k~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~-gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~ 696 (715)
...+.. .|.++|+++++|+.+.++. |+.++++++|.+++++.|+...|++.+|..
T Consensus 160 ~~~~~~------------------------~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 215 (235)
T cd00670 160 FGRGGK------------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGGG 215 (235)
T ss_pred hccCCc------------------------cccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccCCCc
Confidence 332222 5567788999999999999 999999999999999999999999988877
Q ss_pred ecc
Q psy10609 697 THE 699 (715)
Q Consensus 697 ~~~ 699 (715)
.+|
T Consensus 216 ~~~ 218 (235)
T cd00670 216 RAH 218 (235)
T ss_pred eee
Confidence 555
No 25
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.8e-33 Score=320.11 Aligned_cols=183 Identities=22% Similarity=0.418 Sum_probs=169.0
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+.+++...|+.|.++ +++ .+.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+++|||+.+.+
T Consensus 15 p~~~~~~s~~ll~~a-g~i--~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~ 91 (565)
T PRK09194 15 PADAEVISHQLLLRA-GYI--RKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGP 91 (565)
T ss_pred ccccchhhHHHHHhC-CCc--cccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccch
Confidence 335677899999988 554 55689999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.+.++ +++++||||+|+.++.++++++.||++||+|+||+++|||+|.+++ +||+|+|||+|.|+|+||.+ +++
T Consensus 92 emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~-~Gl~R~reF~q~d~~~f~~~~~~a 170 (565)
T PRK09194 92 ELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFIMKDAYSFHADEESL 170 (565)
T ss_pred hceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCC-CcccccccEEEeeEEEEcCChHHH
Confidence 99999876 7899999999999999999999999999999999999999996665 79999999999999999986 588
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEccC
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLSTR 615 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~~ 615 (715)
++++.++++++.++|++|||+|++..+++
T Consensus 171 ~~~~~~~~~~~~~i~~~lgl~~~~~~~~~ 199 (565)
T PRK09194 171 DETYDAMYQAYSRIFDRLGLDFRAVEADS 199 (565)
T ss_pred HHHHHHHHHHHHHHHHHhCCccEEEEccc
Confidence 99999999999999999999999886654
No 26
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-33 Score=314.77 Aligned_cols=228 Identities=18% Similarity=0.280 Sum_probs=183.7
Q ss_pred HHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHHH--cCcEEEecCcccchhhhhhhCcccccCCCceE
Q psy10609 439 KIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYRK--RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~~--~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~ 512 (715)
.+.++-+.|.... + .+|++||+|.|+.|+++|+++|++.+.+ .||.+|.||++.+.++|++||||++|.+.||.
T Consensus 9 ~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~ 88 (456)
T PRK04173 9 SLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVE 88 (456)
T ss_pred HHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeE
Confidence 4555556554432 1 3899999999999999999999999987 79999999999999999999999999999998
Q ss_pred Eee-------c---------------------------------C------------------------ceEEEecCChH
Q psy10609 513 FDV-------E---------------------------------N------------------------ETYALKPMNCP 528 (715)
Q Consensus 513 ~~d-------~---------------------------------~------------------------~~l~LRPt~e~ 528 (715)
... + + ...+|||+++.
T Consensus 89 ~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaq 168 (456)
T PRK04173 89 CKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQ 168 (456)
T ss_pred eCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccch
Confidence 741 0 0 12345555555
Q ss_pred HHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++...|+++++||+ +||+|++|+|+|||+|.++. +||+|+|||+|+|+|+||+|+|+.+|+..+++++.+++..||++
T Consensus 169 g~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~-~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~ 247 (456)
T PRK04173 169 GIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPR-NFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGID 247 (456)
T ss_pred hHHHHHHHHHHhccccCCeeeeEEchhHhCccCCC-CCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCC
Confidence 55555788899999 99999999999999999984 99999999999999999999999999999999999999999997
Q ss_pred -EEEEEccCC--CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcccc-c--cceeccCc
Q psy10609 608 -FNLRLSTRP--EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC-A--TIQLDFQL 681 (715)
Q Consensus 608 -~~v~l~~~~--ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~-~--TiQlDf~~ 681 (715)
+++++++++ +.+.|+.++|+.. + .++.|+.|++ + +.+.||++
T Consensus 248 ~~~~~~s~~~~~e~~~ys~~~wd~e------~--------------------------~~~~g~~~~e~~g~~~~~dydL 295 (456)
T PRK04173 248 PENLRFREHLPEELAHYSKATWDIE------Y--------------------------KFPFGRFWGELEGIANRTDYDL 295 (456)
T ss_pred ccceEEEecCcchhhccHHHHHhHH------H--------------------------hCCCCCcEEEEeeeeccchhhc
Confidence 778888774 4677889999741 1 1223444432 2 34567777
Q ss_pred cc-----ccCcEEE--cCCCceecc
Q psy10609 682 PI-----RFNLAYV--KNVRAQTHE 699 (715)
Q Consensus 682 ~~-----rf~l~Y~--~~dg~~~~~ 699 (715)
+. ||+++|+ +.||++.+|
T Consensus 296 ~~~~~~s~~dl~y~~~~~~~~~~~P 320 (456)
T PRK04173 296 SRHSKHSGEDLSYFDDETTGEKYIP 320 (456)
T ss_pred ccchhhcCCCeEEEecCCCCceeee
Confidence 64 8999999 567887766
No 27
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.4e-33 Score=310.96 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=195.7
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHH-HHHcCcEEEecCcccchhhh
Q psy10609 420 KQLKEWEKLQE-EAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSE-YRKRGFQEVVSPNVYNVKLW 497 (715)
Q Consensus 420 ~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~-~~~~Gy~eV~tP~L~~~el~ 497 (715)
..+++++ .++ .+. ++|.+++.++|+++- -.++|++.|+|.|++|+++|++++++. ..+.||++|.+|.|.+.++|
T Consensus 181 ~~~~~~~-~~~~~F~-~~h~el~~~~glldk-~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell 257 (517)
T PRK00960 181 TIVSESK-KREITFD-GDPTEEAEKLGWVKR-FPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVM 257 (517)
T ss_pred eEEEEeC-CCCCCCC-CCHHHHHHHCCCccc-cCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHH
Confidence 5556666 333 445 999999999999982 347999999999999999999999986 57889999999999999999
Q ss_pred hhhCcccccCCCceEEeec------------------------------CceEEEecCChHHHHHHHHhhhcccCCCCeE
Q psy10609 498 QTSGHWAHYSENMFSFDVE------------------------------NETYALKPMNCPGHCLIFDHRVRSWRELPLR 547 (715)
Q Consensus 498 ~~sG~~~~~~~emy~~~d~------------------------------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlr 547 (715)
.+|||+++|.++||.+... ++.|+||||+|++++.+|+++++|+++||+|
T Consensus 258 ~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLr 337 (517)
T PRK00960 258 YKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIK 337 (517)
T ss_pred hhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHH
Confidence 9999999999999988520 2468999999999999999999999999999
Q ss_pred EEE-eccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCCCCCCCCHHH
Q psy10609 548 MAD-FGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEV 625 (715)
Q Consensus 548 l~~-~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ek~~gd~e~ 625 (715)
+++ +|+|||+|. |.++||+|+|||+|.|+|+||+++|+.+++.+++..+..+++.|||+ |++..++. |++...
T Consensus 338 l~e~sG~cFR~Es-Gs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~DP---Ff~~~~- 412 (517)
T PRK00960 338 FFDRSGWTYRWEG-GGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDDP---FYLEGR- 412 (517)
T ss_pred HhhccCCceeCCC-CCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEecccc---cccccC-
Confidence 999 669999995 45699999999999999999999999999999999999999999999 66654331 211100
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC----CCC--ccccccceeccCcccccCcEEEcCCCce
Q psy10609 626 WNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA----LKR--PHQCATIQLDFQLPIRFNLAYVKNVRAQ 696 (715)
Q Consensus 626 w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~----~gr--~~q~~TiQlDf~~~~rf~l~Y~~~dg~~ 696 (715)
+.... +.+..+. .+.|+.+.-+ .|+ +.|..+.+.|+| ++||+|+| .+|+.
T Consensus 413 ---------------k~~~~-d~~f~~~--~tydiE~wmP~~~~~gk~~ev~S~S~hgd~f-arrfnIk~--~~g~~ 468 (517)
T PRK00960 413 ---------------GLEDR-GIEFPDV--PKYEMELWLPYRGDERKWVAVTSANVHGTHF-VEGFNIKD--YKGRK 468 (517)
T ss_pred ---------------ccccc-cccCccc--cceeEEEEecCccCCCCEEEEEeeeeccchh-hHhhCccc--CCCCe
Confidence 00000 0011122 2344444333 344 666667778999 99999987 34443
No 28
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-32 Score=306.84 Aligned_cols=233 Identities=21% Similarity=0.325 Sum_probs=204.1
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+++|..-.|.-|-++ ++++. .++|++.|+|.|.++++++++.+++++.+.|.++|.+|.|.+.+||+.||||+.|++
T Consensus 15 p~da~~~sh~ll~rA-g~i~~--~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~ 91 (500)
T COG0442 15 PADASEWSHQLLLRA-GMIRK--PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGP 91 (500)
T ss_pred cchhHHHHHHHHHhc-Cceec--ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcch
Confidence 446666678777665 55544 679999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.++++ ++.++||||+|..++.+++++++||++||+++|||+++||+|.+++ +||+|.|||+|.|+|+|+.+ ++|
T Consensus 92 El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr-~gllR~REF~mkdaySfh~~~e~a 170 (500)
T COG0442 92 ELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPR-FGLLRGREFLMKDAYSFHADEEDA 170 (500)
T ss_pred hhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCC-CCccchheeeecccccccCCHHHH
Confidence 99999997 7899999999999999999999999999999999999999999988 89999999999999999998 699
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCC
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL 666 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~ 666 (715)
++++.+++++|.++|.++|+.|..+-. .++++|.... .+|+..-..
T Consensus 171 ~~~y~~~~~~Y~~if~~i~l~~~~~~a--d~g~~Gg~~S--------------------------------~eF~~l~pd 216 (500)
T COG0442 171 EETYEKMLDAYSRIFLRLPLIFGPVPA--DEGFIGGSYS--------------------------------HEFEALMPD 216 (500)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecc--cCCCCCCccc--------------------------------eEEEEEccC
Confidence 999999999999999888887765532 2466655433 356666667
Q ss_pred CCccccccce-eccCccccc-CcEEEcCC-Cceecc
Q psy10609 667 KRPHQCATIQ-LDFQLPIRF-NLAYVKNV-RAQTHE 699 (715)
Q Consensus 667 gr~~q~~TiQ-lDf~~~~rf-~l~Y~~~d-g~~~~~ 699 (715)
|++.|++|++ +..|+.+-| +++|.+++ ++..++
T Consensus 217 ~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v 252 (500)
T COG0442 217 GGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYV 252 (500)
T ss_pred CCccEEEEecchHHhHHHhccCCCccccccccceEe
Confidence 9999999999 777888899 99999988 555444
No 29
>KOG2509|consensus
Probab=99.98 E-value=1.2e-32 Score=294.66 Aligned_cols=238 Identities=18% Similarity=0.329 Sum_probs=208.8
Q ss_pred HHhhhhHHHHhhhcCcceeccC--CCee--EEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccccc
Q psy10609 431 EAAKRDHRKIGREQELFFFHEL--SPGS--CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHY 506 (715)
Q Consensus 431 e~~~rdH~~Lg~~l~Lf~~~~~--~~G~--~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~ 506 (715)
+++...|..|++.+|+++.+.. .+|. |++.+.|+.|.++|++|..+.+.+.||.++.||.|.+.+++..||+.+.+
T Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~ 227 (455)
T KOG2509|consen 148 EFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRF 227 (455)
T ss_pred ccccccHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCC
Confidence 5556789999999999988874 3554 66778899999999999999999999999999999999999999999999
Q ss_pred CCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeEeEeeEEEEeCc
Q psy10609 507 SENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTV 583 (715)
Q Consensus 507 ~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~~~ 583 (715)
.+++|...+++++.+|..|+|.+++.+++++.....+||+|++.+|+|||.|++. ..+||||||||+++|++++|.|
T Consensus 228 d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~P 307 (455)
T KOG2509|consen 228 DEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGP 307 (455)
T ss_pred CcceEEeecCCccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCc
Confidence 9999998888888999999999999999998888889999999999999999953 3789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc
Q psy10609 584 EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRP-------EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP 656 (715)
Q Consensus 584 eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~-------ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp 656 (715)
+++.+++++|+.+++++|++|||||++.---.+ .|| |.|.| .||.|+|
T Consensus 308 e~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~eLg~aAakKy--DiEAW--------------------mPgrg~y--- 362 (455)
T KOG2509|consen 308 EDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKY--DIEAW--------------------MPGRGAY--- 362 (455)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCceeEecCCchhhCcHHHhhc--chhhh--------------------cCccccc---
Confidence 999999999999999999999999998521111 243 77778 6888899
Q ss_pred eeeEEeecCCCCccccccceeccCcccccCcEEE---cCCCceecccccccccC
Q psy10609 657 KIDITITDALKRPHQCATIQLDFQLPIRFNLAYV---KNVRAQTHELPRTLSDI 707 (715)
Q Consensus 657 kid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~---~~dg~~~~~~~~~~~~~ 707 (715)
|.-.+||.| .||| +||++|+|. ..||+.+| +||||+-
T Consensus 363 ----------gEl~ScSNC-TDyQ-SRRL~IRy~~~k~~~~~~~y--vHtLN~T 402 (455)
T KOG2509|consen 363 ----------GELVSCSNC-TDYQ-SRRLGIRYGQKKTNDGEKKY--VHTLNGT 402 (455)
T ss_pred ----------ccccccccc-hhHH-HhhhhhhcccccccCCccce--eeecchh
Confidence 444899999 9999 999999999 46666654 5999973
No 30
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.97 E-value=1.9e-30 Score=297.82 Aligned_cols=183 Identities=23% Similarity=0.415 Sum_probs=169.0
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+.+++...|+.|.+. |++ .+.++|+++|+|.|++++++|++++++++.++||++|.||.|++.++|+.+|||+.+.+
T Consensus 15 p~~~~~~s~~ll~ra-g~i--~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~ 91 (568)
T TIGR00409 15 PADAEVKSHQLLLRA-GFI--RRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGP 91 (568)
T ss_pred CcccchhhHHHHHhC-CCc--cccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccch
Confidence 445677889888877 454 56789999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||++.++ +++++||||+|+.++.++++++.||++||+|+||+++|||+|.+++ +||+|+|||+|.|+|+||.+ +++
T Consensus 92 emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr-~Gl~R~REF~~~d~~~f~~~~~~a 170 (568)
T TIGR00409 92 ELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFIMKDAYSFHSDEESL 170 (568)
T ss_pred hcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCC-CCccccccEEEEEEEEEeCChHHH
Confidence 99999886 7899999999999999999999999999999999999999997666 79999999999999999998 588
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEccC
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLSTR 615 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~~ 615 (715)
++++..+++++.++|++|||+|++..+.+
T Consensus 171 ~~e~~~~~~~y~~if~~LgL~~~~v~~~~ 199 (568)
T TIGR00409 171 DATYQKMYQAYSNIFSRLGLDFRPVQADS 199 (568)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEecc
Confidence 89999999999999999999998876665
No 31
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.96 E-value=3.6e-30 Score=253.79 Aligned_cols=160 Identities=38% Similarity=0.760 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcc-cC
Q psy10609 466 IYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRS-WR 542 (715)
Q Consensus 466 l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s-~~ 542 (715)
|+++|++++++.+. +.||++|.||.|++.++|.++||++.+.++||.+.+. +++++||||+|++++.++++...+ ++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 68999999999999 9999999999999999999999999999999999886 467999999999999999999999 99
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCc-EEEEEEccCCC----
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRLSTRPE---- 617 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl-~~~v~l~~~~e---- 617 (715)
+||++++++|+|||+|.++. +||+|+|||+|.|+|+||.++++.+++.++++.+.++++.||| +|+++.+++++
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~-~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~ 159 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPT-RGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAY 159 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSB-STTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTT
T ss_pred cCCeEEeecccccccccccc-cccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCC
Confidence 99999999999999998554 8999999999999999999999999999999999999999999 89999988854
Q ss_pred -CCCCCHHHH
Q psy10609 618 -KYLGELEVW 626 (715)
Q Consensus 618 -k~~gd~e~w 626 (715)
++.++.|.|
T Consensus 160 ~~~~~d~e~~ 169 (173)
T PF00587_consen 160 AKYEFDIEAW 169 (173)
T ss_dssp SSEEEEEEEE
T ss_pred HHHcccHHHh
Confidence 334445544
No 32
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.96 E-value=1.1e-29 Score=280.99 Aligned_cols=229 Identities=18% Similarity=0.253 Sum_probs=188.3
Q ss_pred hhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHH-HHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRS-EYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 435 rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~-~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
++|.+|+++++|++- -.++|+++|.|.|+.|+++|++++.+ .+++.||++|.+|.|.+.+++.++||+++|.++||.+
T Consensus 195 ~~h~el~~k~glidk-~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~V 273 (520)
T TIGR00415 195 GDPTDEAEKLGWVKK-FPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYC 273 (520)
T ss_pred CCHHHHHHHCCCeeE-EcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEE
Confidence 899999999999863 24799999999999999999999976 4577899999999999999999999999999999988
Q ss_pred ee------------------------------cCceEEEecCChHHHHHHHHhhhcccCCCCeEEEE-eccCcccCCCCC
Q psy10609 514 DV------------------------------ENETYALKPMNCPGHCLIFDHRVRSWRELPLRMAD-FGVLHRNELSGA 562 (715)
Q Consensus 514 ~d------------------------------~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~-~g~~FR~E~~~~ 562 (715)
.. +...++|+||+|++++.++++++.++++||+|+++ +++|||+|.++.
T Consensus 274 t~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGst 353 (520)
T TIGR00415 274 CAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGA 353 (520)
T ss_pred ecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCC
Confidence 42 12378999999999999999999999999999999 568999999875
Q ss_pred CCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy10609 563 LTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGE 642 (715)
Q Consensus 563 l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~ 642 (715)
+||+|+|||+|.|+|.+|++++|.+++.++++.+.++++.|||+|++..++-| |++..-
T Consensus 354 -rGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDP--Ff~~g~------------------ 412 (520)
T TIGR00415 354 -KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEVGDDP--FYLEGR------------------ 412 (520)
T ss_pred -CCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCc--cccccc------------------
Confidence 89999999999999999999999999999999999999999999999854421 111000
Q ss_pred CccccCCCCccc-cceeeEEeec------CCCCccccccceeccCcccccCcE
Q psy10609 643 PWTENPGDGAFY-GPKIDITITD------ALKRPHQCATIQLDFQLPIRFNLA 688 (715)
Q Consensus 643 ~~~~~~g~~afY-gpkid~~~~D------~~gr~~q~~TiQlDf~~~~rf~l~ 688 (715)
+- ..++-.|- ..|.|+.+.- ..|+..|.+|.|-| +++++|+|+
T Consensus 413 k~--~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~-hF~k~F~I~ 462 (520)
T TIGR00415 413 KK--EDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGT-HFIEGFRIK 462 (520)
T ss_pred Cc--ccccccCcccceEEEEEEEccccCCCCCcEEEEeechhc-ccccccCcc
Confidence 00 00111122 2345554422 25788999999955 559999999
No 33
>PLN02908 threonyl-tRNA synthetase
Probab=99.96 E-value=1.3e-28 Score=289.39 Aligned_cols=213 Identities=27% Similarity=0.352 Sum_probs=192.7
Q ss_pred eecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCccccc
Q psy10609 180 MYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKS 259 (715)
Q Consensus 180 ~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~l 259 (715)
+...+.++.+|+++|++|+++|.++++.+..++|+|++|||+.+++++|++|+.|||+.+++.++..+|+|+|||++++
T Consensus 19 ~~~~~~~~~~r~~~f~~~~~~~~~~~~~~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~d- 97 (686)
T PLN02908 19 EEYLSAVIKKRIELFEKIQARQLARLESAGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWD- 97 (686)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEee-
Confidence 3334678899999999999999999999988999999999999999999999999999999999999999999999885
Q ss_pred CCccccccCccccccCCCChHH-------HHHHHHHHHHhcCC--------Cc--e----------eecCHHHHHHHHhc
Q psy10609 260 RGNELCESSQYFSLVSTLDFPV-------MEGLMKDIVKEKQP--------FE--R----------LEMKKEDLIEMFKY 312 (715)
Q Consensus 260 dl~~~i~~~~~ve~It~~d~~g-------Le~lm~~aV~~l~P--------~~--r----------~~vs~eda~~If~~ 312 (715)
++++++.||.++|++.++.+| +.++|..|+.+.+. +. . ..+|.+|+.+|.+
T Consensus 98 -L~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~- 175 (686)
T PLN02908 98 -MTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEA- 175 (686)
T ss_pred -cCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCHHHHHHHHH-
Confidence 689999999999999999877 57899999988762 21 1 1478899999999
Q ss_pred ChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCc
Q psy10609 313 NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGP 392 (715)
Q Consensus 313 ~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP 392 (715)
.|.+||+++.|+++.. +++++|.++|+++++|++|++..++.++|++|+||+|+|||+||
T Consensus 176 --~m~~iI~~~~pi~r~~------------------v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~~D~c~Gp 235 (686)
T PLN02908 176 --RAEKAVKEKQPFERIE------------------VTREEALEMFSENKFKVEIINDLPEDATITVYRCGPLVDLCRGP 235 (686)
T ss_pred --HHHHHHhcCCCeEEEE------------------EcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCEEEecCCC
Confidence 8999999999999885 79999999999999999999987656689999999999999999
Q ss_pred CCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 393 HNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 393 ~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
||||| |.++.|+|+++++++|..
T Consensus 236 hv~sT---g~ik~f~l~~~~~~~~lg 258 (686)
T PLN02908 236 HIPNT---SFVKAFACLKASSAYWRG 258 (686)
T ss_pred CCCCC---CccceeEEEEecceEEcC
Confidence 99999 779999999999999873
No 34
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.95 E-value=2.5e-27 Score=265.13 Aligned_cols=226 Identities=16% Similarity=0.261 Sum_probs=183.9
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-C-cccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-G-HWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G-~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|++||+|..+..++.|++.+++.+.++||++|.||+|++.++|.++ | +++.+.++||+|.|. |+.++|||+.|+
T Consensus 6 ~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~ 85 (430)
T CHL00201 6 AIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTA 85 (430)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcH
Confidence 3689999999999999999999999999999999999999999999875 5 777788999999875 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++.....+++.+|+|+||+|+|||+|+++. | |+|||+|+|+|+||.++ .+|+| ++.++.++|+.||++
T Consensus 86 ~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~--G--R~Ref~Q~g~EiiG~~~~~aD~E---vi~l~~~~l~~lGl~ 158 (430)
T CHL00201 86 GIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQS--G--RQRQFHQLGIEFIGSIDARADTE---VIHLAMQIFNELQVK 158 (430)
T ss_pred HHHHHHHHccccccCCCeEEEEEcceecCCCCcC--C--ccceeEEeceEEECCCChhhHHH---HHHHHHHHHHHcCCC
Confidence 9999987666667789999999999999999995 8 99999999999999985 66766 689999999999997
Q ss_pred -EEEEEccCCC----------------CC---C---------------------CCHHHHH-----------HHHHHHH-
Q psy10609 608 -FNLRLSTRPE----------------KY---L---------------------GELEVWN-----------KAEKQLE- 634 (715)
Q Consensus 608 -~~v~l~~~~e----------------k~---~---------------------gd~e~w~-----------~a~~~L~- 634 (715)
|++.+++++- ++ + ++.+.++ .+.+.|.
T Consensus 159 ~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~ 238 (430)
T CHL00201 159 NLILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYD 238 (430)
T ss_pred ceEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHHHHH
Confidence 9999987431 00 0 0111221 1222233
Q ss_pred --HHHHhcCCCccccCC---CCccc-cceeeEEeecCCCCccccccceeccCccccc
Q psy10609 635 --ASLNSFGEPWTENPG---DGAFY-GPKIDITITDALKRPHQCATIQLDFQLPIRF 685 (715)
Q Consensus 635 --~~L~~~g~~~~~~~g---~~afY-gpkid~~~~D~~gr~~q~~TiQlDf~~~~rf 685 (715)
+.|+..|+++.++++ ..+|| |+++|+...+..++.+.||+=..| ++..+|
T Consensus 239 ~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD-~L~~~f 294 (430)
T CHL00201 239 VCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYD-SLIHQL 294 (430)
T ss_pred HHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchH-HHHHHh
Confidence 556677888888887 45899 789999887766777888887777 334444
No 35
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.93 E-value=3.7e-26 Score=238.96 Aligned_cols=196 Identities=21% Similarity=0.195 Sum_probs=161.0
Q ss_pred HHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcC--cEEEecCcccchhhhhhh-CcccccCCCce
Q psy10609 439 KIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRG--FQEVVSPNVYNVKLWQTS-GHWAHYSENMF 511 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~G--y~eV~tP~L~~~el~~~s-G~~~~~~~emy 511 (715)
+|.++.+++.... ..+|+++|+|.|+.++++|++++++.+.++| |++|.||+|++.++|... |+++
T Consensus 3 ~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d------- 75 (254)
T cd00774 3 ELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE------- 75 (254)
T ss_pred hHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC-------
Confidence 4555556554331 1489999999999999999999999999996 999999999998666542 4331
Q ss_pred EEeecCceEEEecCChHHHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHH
Q psy10609 512 SFDVENETYALKPMNCPGHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 590 (715)
Q Consensus 512 ~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~ 590 (715)
++++.++||||+|++++..+++...+++ +||+|++|+|+|||+|.+++ +||+|+|||+|+|+|+||+++|+.+++
T Consensus 76 ---~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~-~gl~R~ReF~q~d~~~f~~~~~~~e~~ 151 (254)
T cd00774 76 ---SGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFTQAEIEFFVDPEKSHPWF 151 (254)
T ss_pred ---CCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcc-cceeeeccchhhheeeeECCCCchHHH
Confidence 2356889999999999988888777665 99999999999999999998 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcE---EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q psy10609 591 VGALDFLRNVYSIFGFT---FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWT 645 (715)
Q Consensus 591 ~~~l~~~~~il~~LGl~---~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~ 645 (715)
..+++.+.++++++|++ +++......+.-+.+.+.|+.+.+.-..+++..|++..
T Consensus 152 ~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi~~~ 209 (254)
T cd00774 152 DYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFPHGFLELEGIANR 209 (254)
T ss_pred HHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHhhhHHHHcCCCcc
Confidence 99999999999999985 45544333344455677888777777788888998755
No 36
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.2e-24 Score=235.89 Aligned_cols=156 Identities=21% Similarity=0.345 Sum_probs=140.8
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcc-cccCCCceEEeec-CceEEEecCChHH
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHW-AHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~-~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
++|++||+|..+.+|+.+++.+++.++++||.+|.||++++.++|.+ +|.. +...++||.|.|+ |+.++|||+.+++
T Consensus 7 prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tap 86 (429)
T COG0124 7 PRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAP 86 (429)
T ss_pred CCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHH
Confidence 68999999999999999999999999999999999999999999975 4532 3367999999997 8999999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++.+....... .+|+|+|++|+|||+|+||+ | |+|||+|+|+++||.+. .+|+| ++.++.+++++|||.
T Consensus 87 v~R~~~en~~~~-~~p~k~yy~g~vfRyErPQ~--G--R~RqF~Q~g~E~iG~~~~~~DAE---vi~l~~~~l~~lGi~~ 158 (429)
T COG0124 87 VARAVAENKLDL-PKPLKLYYFGPVFRYERPQK--G--RYRQFYQFGVEVIGSDSPDADAE---VIALAVEILEALGIGG 158 (429)
T ss_pred HHHHHHhccccc-cCCeeEEEecceecCCCCCC--C--CceeeEEcCeEEeCCCCcccCHH---HHHHHHHHHHHcCCCc
Confidence 999887655433 48999999999999999995 9 99999999999999985 88999 689999999999998
Q ss_pred EEEEEccCC
Q psy10609 608 FNLRLSTRP 616 (715)
Q Consensus 608 ~~v~l~~~~ 616 (715)
|++++++++
T Consensus 159 ~~l~iN~~g 167 (429)
T COG0124 159 FTLEINSRG 167 (429)
T ss_pred EEEEEcCcc
Confidence 999998874
No 37
>KOG2324|consensus
Probab=99.91 E-value=3.3e-24 Score=223.97 Aligned_cols=174 Identities=21% Similarity=0.376 Sum_probs=159.2
Q ss_pred HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-C
Q psy10609 439 KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-N 517 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~ 517 (715)
+|..++|+ +.+.++|++-|+|.|.+..+++.+.+...++..|.+.|..|+|.+.++|+++|.|+....+||++.|+ |
T Consensus 29 ~LL~e~Gf--I~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~g 106 (457)
T KOG2324|consen 29 ELLQEVGF--IRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKG 106 (457)
T ss_pred HHHHHhCc--cccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCC
Confidence 44455664 55677999999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred ceEEEecCChHHHHHHHHhhhc-ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHH
Q psy10609 518 ETYALKPMNCPGHCLIFDHRVR-SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALD 595 (715)
Q Consensus 518 ~~l~LRPt~e~~~~~~~~~~~~-s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~ 595 (715)
+.|+|.||+|..++.+.++.+. ||++||+++||+|+.||+|.+++ .||+|-|||.|.|+++|.++ |.|.+.+..+.+
T Consensus 107 kq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpR-fGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~ 185 (457)
T KOG2324|consen 107 KQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPR-FGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQ 185 (457)
T ss_pred CEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCcc-ccchhhHHHHHhhhhcccCCHHHHHHHHHHHHH
Confidence 9999999999999999888765 99999999999999999999999 89999999999999999997 578899999999
Q ss_pred HHHHHHHHcCcEEEEEEccC
Q psy10609 596 FLRNVYSIFGFTFNLRLSTR 615 (715)
Q Consensus 596 ~~~~il~~LGl~~~v~l~~~ 615 (715)
.|.++|+.||+||.-+-...
T Consensus 186 aY~~iFkqL~~pfVkv~Ads 205 (457)
T KOG2324|consen 186 AYDRIFKQLGLPFVKVWADS 205 (457)
T ss_pred HHHHHHHHcCCCeEEEeecc
Confidence 99999999999976554443
No 38
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=1.3e-22 Score=237.67 Aligned_cols=182 Identities=23% Similarity=0.284 Sum_probs=165.0
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------H
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------M 282 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------L 282 (715)
..||+|++|||+.+++++ |+|+.|||+++++.+..++|||+|||++++ |++.+..++.++|++..+.+| +
T Consensus 3 ~~mi~i~~~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~l~d--L~~~i~~d~~i~fv~~~~~~g~~iy~hS~ 79 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDKLYD--LRRNLEEDAEVEIITIDSNEGVEIARHSA 79 (639)
T ss_pred CCCeEEEeCCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCEEEE--cCcccCCCCeEEEecCCChHHHHHHHHHH
Confidence 357999999999999998 999999999999999999999999999985 689999999999999999877 5
Q ss_pred HHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCc
Q psy10609 283 EGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGP 344 (715)
Q Consensus 283 e~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p 344 (715)
.++|..|+++.+|... ..+|.+++.+|++ +|.++|+++.|+.+..
T Consensus 80 ~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~it~edl~~Ie~---~m~eiI~~~~pI~~~~-------------- 142 (639)
T PRK12444 80 AHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIEK---EMKKIINENIKIERVE-------------- 142 (639)
T ss_pred HHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE--------------
Confidence 8899999999998642 1478999999999 8999999999998874
Q ss_pred cccCcChhhHHhhccc--CcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 345 HVRHTGKIKAFKVTKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 345 ~~~~t~~~eA~eLf~~--~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
+++++|.++|.. +.+|++|++..+..+.|++|+||+|+|||+||||||| |.++.|+|++|++++|..
T Consensus 143 ----v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~~~D~c~G~hv~sT---g~ik~f~l~~~~~g~~~g 211 (639)
T PRK12444 143 ----VSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEFVDLCRGPHLPST---GYLKAFQLTHVSGAYWRG 211 (639)
T ss_pred ----ecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEECCEEEEcCCcCCCCC---CCCceeEEEEEcceEEcC
Confidence 799999999997 3899999998764467999999999999999999999 789999999999999984
No 39
>PLN02530 histidine-tRNA ligase
Probab=99.87 E-value=7.7e-22 Score=224.15 Aligned_cols=156 Identities=23% Similarity=0.337 Sum_probs=138.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGH 530 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~ 530 (715)
.++|++||+|.++.+++.|++.+++.+.++||++|.||.|++.++|.++.. +...++||.|.|. |+.++|||+.++++
T Consensus 72 ~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g-~~~~~~~y~f~D~~g~~l~LRpD~T~~i 150 (487)
T PLN02530 72 PPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAG-EEITDQLYNFEDKGGRRVALRPELTPSL 150 (487)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccC-cccccceEEEECCCCCEEecCCCCcHHH
Confidence 368999999999999999999999999999999999999999999976432 3467889999886 78999999999999
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE--
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-- 607 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-- 607 (715)
++++.....+. ++|+|+|++|+|||+|+++. | |.|||+|+++++||.+. .+++| ++.++.++|+.||++
T Consensus 151 aR~~~~~~~~~-~~P~r~~y~g~vfR~e~~q~--g--r~REf~Q~giEiiG~~~~~aDaE---vi~l~~~~l~~lgl~~~ 222 (487)
T PLN02530 151 ARLVLQKGKSL-SLPLKWFAIGQCWRYERMTR--G--RRREHYQWNMDIIGVPGVEAEAE---LLAAIVTFFKRVGITSS 222 (487)
T ss_pred HHHHHhccccc-CCCeEEEEEcCEEcCcCCCC--C--CccceEEcCeeEeCCCCcchhHH---HHHHHHHHHHHcCCCCC
Confidence 99988655443 69999999999999999985 8 99999999999999875 68888 678899999999994
Q ss_pred -EEEEEccCC
Q psy10609 608 -FNLRLSTRP 616 (715)
Q Consensus 608 -~~v~l~~~~ 616 (715)
|++.++++.
T Consensus 223 ~~~i~i~~~~ 232 (487)
T PLN02530 223 DVGIKVSSRK 232 (487)
T ss_pred ceEEEEcCHH
Confidence 999999874
No 40
>KOG4163|consensus
Probab=99.87 E-value=2.8e-22 Score=213.41 Aligned_cols=243 Identities=19% Similarity=0.325 Sum_probs=200.7
Q ss_pred cccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCccc
Q psy10609 413 GISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 492 (715)
Q Consensus 413 G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~ 492 (715)
|..-+..+++-+|....- .+.+++++.++ +|.+.+.|-++.+|++|..|+...+++.|.++..+|.++
T Consensus 59 gl~~~k~~df~~WY~qVi-----------tk~emieYydv-sGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfV 126 (551)
T KOG4163|consen 59 GLTAKKEEDFPEWYSQVI-----------TKGEMIEYYDV-SGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFV 126 (551)
T ss_pred ccccccccchHHHHHHHh-----------hhhhhheeecc-cceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeec
Confidence 777778888999986543 45677777764 799999999999999999999999999999999999999
Q ss_pred chhhhhh-hCcccccCCCceEEeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCc
Q psy10609 493 NVKLWQT-SGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 566 (715)
Q Consensus 493 ~~el~~~-sG~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL 566 (715)
+.+++++ ..|.+.|.+++-.+... .+.+++|||++...+.+|+.|++|||+||+|+.||.+|-|+|-.+. ..+
T Consensus 127 s~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p-~PF 205 (551)
T KOG4163|consen 127 SKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHP-QPF 205 (551)
T ss_pred CHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCC-Ccc
Confidence 9998864 67999999999887653 3578999999999999999999999999999999999999998854 689
Q ss_pred ceeeeEeEeeEEE-EeCchhHHHHHHHHHHHHHHHHHHc-CcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy10609 567 TRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644 (715)
Q Consensus 567 ~R~REFtq~d~~i-f~~~eqa~~E~~~~l~~~~~il~~L-Gl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~ 644 (715)
+|.|||.+.|.|. |.++++|++|+..+|+++.+++.+| .+|+.-.-.+..++|.|.+
T Consensus 206 lRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd--------------------- 264 (551)
T KOG4163|consen 206 LRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGD--------------------- 264 (551)
T ss_pred hhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCc---------------------
Confidence 9999999999999 5567899999999999999999875 4552211111123333222
Q ss_pred cccCCCCccccceeeEEeecCCCCccccccce-eccCcccccCcEEEcC-CCceecc
Q psy10609 645 TENPGDGAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKN-VRAQTHE 699 (715)
Q Consensus 645 ~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~-dg~~~~~ 699 (715)
|--.+|-.+ -..||..|.+|.| |..|+++-|+|.|-|. +|+++++
T Consensus 265 ---------~TttvEa~i-~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv 311 (551)
T KOG4163|consen 265 ---------YTTTVEAFI-PCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFV 311 (551)
T ss_pred ---------ceEEEeeee-ccccccccccchhhhhHHHHHhhceeecCCCccchhhe
Confidence 223344433 3458999999999 9999999999999999 8888777
No 41
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=5e-21 Score=213.38 Aligned_cols=171 Identities=18% Similarity=0.327 Sum_probs=141.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cccc-ccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWA-HYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~-~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.++.+++.+++.+++.+.++||++|.||.|++.++|..+ |++. .+.++||++.|. |+.++|||+.|+
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~ 85 (412)
T PRK00037 6 APRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTA 85 (412)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcH
Confidence 4689999999999999999999999999999999999999999999765 6553 357899999876 899999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
+++++++... .+|+|+|++|+|||+|.++. | |.|||+|.|+++||.++ .+++| ++.++.++++.||++
T Consensus 86 ~~ar~~~~~~----~~p~r~~~~g~vfR~e~~~~--g--r~ref~Q~g~ei~g~~~~~~d~E---~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 86 PVVRAVIEHK----LQPFKLYYIGPMFRYERPQK--G--RYRQFHQFGVEVIGSDSPLADAE---VIALAADILKALGLK 154 (412)
T ss_pred HHHHHHHhCC----CCCeEEEEEcCccccCCCCC--C--cccceEEcCeeeeCCCCcchhHH---HHHHHHHHHHHcCCC
Confidence 9998877542 29999999999999998884 7 99999999999999985 67888 578899999999997
Q ss_pred -EEEEEccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy10609 608 -FNLRLSTRPEKYLGELEVWNKAEKQLEASLN 638 (715)
Q Consensus 608 -~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~ 638 (715)
+.+.+++. ++...+....+.|+.+|+
T Consensus 155 ~~~~~l~~~-----~~~~~~~~~~~~l~~~l~ 181 (412)
T PRK00037 155 GLKLLINSL-----GDFEIRANYRKALVGFLE 181 (412)
T ss_pred ceeeeeccC-----CCHHHhHHHHHHHHHHHH
Confidence 77776543 333344333334444443
No 42
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.84 E-value=5.3e-21 Score=224.48 Aligned_cols=180 Identities=29% Similarity=0.390 Sum_probs=162.8
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------HHH
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------MEG 284 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------Le~ 284 (715)
+|+|++|||+.++++. |+|+.|+|+.++......+|+|+|||++++ |++.+.+++.|+|++..+.+| +.+
T Consensus 1 ~~~i~~~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~l~d--L~~~l~~d~~Vefi~~~~~~g~~~y~hS~~h 77 (638)
T PRK00413 1 MIKITLPDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGELVD--LSTPIEEDASLEIITAKDEEGLEIIRHSAAH 77 (638)
T ss_pred CcEEEeCCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCEEee--CCccccCCCceeeeeccchhhHHHHhhhHHH
Confidence 5899999999999998 999999999999999999999999999985 689999999999999998877 578
Q ss_pred HHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 285 LMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 285 lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
+|..|+++.+|..+ ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 78 ll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~---~m~~iI~~~~pi~~~~---------------- 138 (638)
T PRK00413 78 LLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAIEK---EMKEIIKENYPIEREV---------------- 138 (638)
T ss_pred HHHHHHHHHcCCceEEECCccCCeEEEEEeCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE----------------
Confidence 99999999998532 1478999999999 8999999999998874
Q ss_pred cCcChhhHHhhccc--CcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 347 RHTGKIKAFKVTKY--NPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 347 ~~t~~~eA~eLf~~--~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
+++++|.++|.. +.+|++|++.++..+.|++|+||+|+|||+||||||| |.++.|+|..|+|++|-.
T Consensus 139 --v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~~d~c~G~hv~~T---g~i~~f~i~~~~~g~~l~ 207 (638)
T PRK00413 139 --VSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEFVDLCRGPHVPST---GKIKAFKLLKVAGAYWRG 207 (638)
T ss_pred --ecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCEEEECCCCCCCcc---cCCceeEEEEEcceEEcC
Confidence 799999999987 4899999998765458999999999999999999999 789999999999998874
No 43
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.84 E-value=1.6e-20 Score=210.08 Aligned_cols=156 Identities=14% Similarity=0.235 Sum_probs=138.2
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|++||+|..+.+++.+++.+++.|+++||++|.||.|++.++|... |..+...++||+|.|. |+.++|||+.+++
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~ 85 (423)
T PRK12420 6 NVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIP 85 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHH
Confidence 4689999999999999999999999999999999999999999999653 5555666889999886 7899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcEE
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFTF 608 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~~ 608 (715)
++++++... ...+|+|+|++|+|||+|.++. | |.|||+|+++++||.+. .+++| ++.++.++++.||+.+
T Consensus 86 iaR~va~~~--~~~~p~r~~y~g~vfR~~~~~~--g--r~rE~~Q~g~EiiG~~~~~adaE---vi~la~~~l~~lg~~~ 156 (423)
T PRK12420 86 FAKVVAMNP--NIRLPFKRYEIGKVFRDGPIKQ--G--RFREFIQCDVDIVGVESVMAEAE---LMSMAFELFRRLNLEV 156 (423)
T ss_pred HHHHHHhCc--CCCCCeeEEEEcceECCCCCCC--C--ccceeEECCeeeECCCCCcccHH---HHHHHHHHHHHCCCCE
Confidence 998887542 2468999999999999999874 8 99999999999999874 77887 6889999999999999
Q ss_pred EEEEccCC
Q psy10609 609 NLRLSTRP 616 (715)
Q Consensus 609 ~v~l~~~~ 616 (715)
.+.++++.
T Consensus 157 ~i~l~~~~ 164 (423)
T PRK12420 157 TIQYNNRK 164 (423)
T ss_pred EEEEcCHH
Confidence 99999863
No 44
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.84 E-value=4.4e-20 Score=204.88 Aligned_cols=156 Identities=18% Similarity=0.294 Sum_probs=137.4
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhC--cccccCCCceEEeec-CceEEEecCChHH
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG--HWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG--~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
++|+++|+|.++.+++.|++.+++.+.++||++|.||.|++.++|..++ +.+.+.++||++.|. |+.++|||+.|++
T Consensus 3 p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~ 82 (397)
T TIGR00442 3 PRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAP 82 (397)
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHH
Confidence 5799999999999999999999999999999999999999999997653 334466899999874 8899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++++.... ++.++|+|+|++|+|||+|.++. | |.|||+|.|+++||.++ .+++| ++.++.++++.||++
T Consensus 83 iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~--g--r~ref~Q~g~eiig~~~~~~d~E---~i~l~~e~l~~lg~~~ 154 (397)
T TIGR00442 83 VARAVIENK-LLLPKPFKLYYIGPMFRYERPQK--G--RYRQFHQFGVEVIGSDSPLADAE---IIALAAEILKELGIKD 154 (397)
T ss_pred HHHHHHhcc-cccCCCeEEEEEcCeecCCCCCC--C--cccceEEcCeeeeCCCCHHHHHH---HHHHHHHHHHHcCCCc
Confidence 999887553 35679999999999999998874 7 99999999999999885 45555 789999999999997
Q ss_pred EEEEEccCC
Q psy10609 608 FNLRLSTRP 616 (715)
Q Consensus 608 ~~v~l~~~~ 616 (715)
+++.++++.
T Consensus 155 ~~i~i~~~~ 163 (397)
T TIGR00442 155 FTLEINSLG 163 (397)
T ss_pred eEEEecCcc
Confidence 999999874
No 45
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.84 E-value=3.3e-20 Score=194.71 Aligned_cols=192 Identities=19% Similarity=0.313 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
+.+++.|++.+++.++++||++|.||.|++.++|..++ ++...++||++.|. |+.++|||+.|++++++++....+ .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-L 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-C
Confidence 57889999999999999999999999999999998776 56678899999875 789999999999999998876655 5
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC--C-
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP--E- 617 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~--e- 617 (715)
++|+|++++|+|||+|.++. | |.|||+|.++++||.++ .+++| ++.++.++++.||++ +.+.++++. +
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~--g--~~re~~Q~g~Eiig~~~~~~daE---~i~l~~~~l~~lg~~~~~i~l~~~~i~~~ 152 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQK--G--RYREFYQVGVEIIGSDSPLADAE---VIALAVEILEALGLKDFQIKINHRGILDG 152 (261)
T ss_pred CCCeEEEEEcCEEecCCCCC--C--CccceEEeceeeeCCCChHHHHH---HHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 79999999999999999874 7 99999999999999965 55555 789999999999997 999999875 2
Q ss_pred --CCCCCHHHHH---------HHHH---HHHHHHHhcCC--CccccCCC---Cccc-cceeeEEeec
Q psy10609 618 --KYLGELEVWN---------KAEK---QLEASLNSFGE--PWTENPGD---GAFY-GPKIDITITD 664 (715)
Q Consensus 618 --k~~gd~e~w~---------~a~~---~L~~~L~~~g~--~~~~~~g~---~afY-gpkid~~~~D 664 (715)
+..+..+.+. .+.+ .+.+.|+..|+ .+..+++. -.|| |.-+++....
T Consensus 153 l~~~~~~~~~~~~~l~~~l~~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~ 219 (261)
T cd00773 153 IAGLLEDREEYIERLIDKLDKEALAHLEKLLDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADG 219 (261)
T ss_pred HhhccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCceEEEcCccccCCcccCceEEEEEECC
Confidence 1222222221 2222 23445666674 34455554 2577 8888876544
No 46
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.82 E-value=8.1e-20 Score=202.48 Aligned_cols=156 Identities=22% Similarity=0.319 Sum_probs=136.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~ 529 (715)
.++|++|++|..+..++.+++.+++.|+++||++|.||.|++.+++...+. +...++||+|.|. |+.++|||..+++
T Consensus 5 ~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g-~~~~~~~~~f~d~~~g~~l~LRpD~T~~ 83 (391)
T PRK12292 5 LPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG-AILDLRTFKLVDQLSGRTLGLRPDMTAQ 83 (391)
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCC-ccchhhhEEEeecCCCCEEEECCCCcHH
Confidence 468999999999999999999999999999999999999999999965432 2346789999876 7899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
++++++.... ....|+|+|++|+|||+|.++. | |.|||+|+++++||.++ .+|+| ++.++.++++.||++
T Consensus 84 iaR~~a~~~~-~~~~p~r~~y~g~vfR~~~~~~--g--r~ref~Q~g~EiiG~~~~~aDaE---vi~l~~~~l~~lgl~~ 155 (391)
T PRK12292 84 IARIAATRLA-NRPGPLRLCYAGNVFRAQERGL--G--RSREFLQSGVELIGDAGLEADAE---VILLLLEALKALGLPN 155 (391)
T ss_pred HHHHHHHhcc-CCCCCeEEEeeceeeecCCCcC--C--CccchhccceEEeCCCCchHHHH---HHHHHHHHHHHcCCCC
Confidence 9998875542 3468999999999999999884 8 99999999999999875 67777 689999999999996
Q ss_pred EEEEEccCC
Q psy10609 608 FNLRLSTRP 616 (715)
Q Consensus 608 ~~v~l~~~~ 616 (715)
+.+.++++.
T Consensus 156 ~~i~i~~~~ 164 (391)
T PRK12292 156 FTLDLGHVG 164 (391)
T ss_pred eEEEeccHH
Confidence 999999874
No 47
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.82 E-value=1.1e-19 Score=195.83 Aligned_cols=150 Identities=23% Similarity=0.365 Sum_probs=132.7
Q ss_pred EEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHH
Q psy10609 457 CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFD 535 (715)
Q Consensus 457 ~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~ 535 (715)
+|++|.++.+++.+++.+++.++++||.+|.||.|++.+++...++ ...++||++.|. |+.++|||..|+++++++.
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~ 78 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVS 78 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCCCCEEeecCcCcHHHHHHHH
Confidence 4789999999999999999999999999999999999999987766 367899999875 8899999988888888887
Q ss_pred hhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-EEEEEc
Q psy10609 536 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 536 ~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~~v~l~ 613 (715)
.... ..++|+|++++|+|||+|.++. | |.|||+|.++|+||.++ .+++| ++.++.++++.||+. +.+.++
T Consensus 79 ~~~~-~~~~p~r~~y~g~VfR~~~~~~--g--r~re~~Q~g~Eiig~~~~~adaE---vi~l~~~~l~~lg~~~~~i~l~ 150 (314)
T TIGR00443 79 TRLR-DRPLPLRLCYAGNVFRTNESGA--G--RSREFTQAGVELIGAGGPAADAE---VIALLIEALKALGLKDFKIELG 150 (314)
T ss_pred Hhcc-cCCCCeEEEEeceEeecCCCcC--C--CcccccccceEEeCCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeC
Confidence 6554 4568999999999999999884 7 99999999999999875 55655 789999999999996 999998
Q ss_pred cCC
Q psy10609 614 TRP 616 (715)
Q Consensus 614 ~~~ 616 (715)
++.
T Consensus 151 ~~~ 153 (314)
T TIGR00443 151 HVG 153 (314)
T ss_pred cHH
Confidence 874
No 48
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.81 E-value=2.5e-19 Score=198.47 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=135.1
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec--CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE--NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~--~~~l~LRPt~e~ 528 (715)
.++|++|++|..+..++.|++.+++.+.++||++|.||.|++.+++... |. .....||+|.|. |+.++|||..++
T Consensus 9 ~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~--~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 9 LPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQ--DLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCc--cchhceEEEEcCCCCcEEEECCcCCH
Confidence 4789999999999999999999999999999999999999999999653 43 234579999884 788999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++.+... ...|+|+||+|+|||++.++. | |.|||+|.++++||.+. .+|+| ++.++.++++.||++
T Consensus 87 ~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~~~~~--g--r~rEf~Q~GvEiiG~~~~~aDaE---vi~l~~e~l~~lgi~ 157 (392)
T PRK12421 87 QVARIDAHLLN--REGVARLCYAGSVLHTLPQGL--F--GSRTPLQLGAELYGHAGIEADLE---IIRLMLGLLRNAGVP 157 (392)
T ss_pred HHHHHHHhhcC--CCCceEEEEeeeEEEcCCCcC--C--CcCccceeceEEeCCCCchhHHH---HHHHHHHHHHHcCCC
Confidence 99998765432 267999999999999998874 8 99999999999999875 78888 688999999999996
Q ss_pred -EEEEEccCC
Q psy10609 608 -FNLRLSTRP 616 (715)
Q Consensus 608 -~~v~l~~~~ 616 (715)
+.+.+++++
T Consensus 158 ~~~l~ig~~~ 167 (392)
T PRK12421 158 ALHLDLGHVG 167 (392)
T ss_pred CeEEEeCCHH
Confidence 999999874
No 49
>PLN02972 Histidyl-tRNA synthetase
Probab=99.80 E-value=4.5e-19 Score=206.13 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=133.4
Q ss_pred cCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChH
Q psy10609 451 ELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 451 ~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
+.++|++||+|..+.+++.|++.+++.|+++||.+|.||.|++.+++... |. . .++||.|.|. |+.++|||..++
T Consensus 328 k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ge--d-~k~mY~f~D~gGr~LaLRPDlTv 404 (763)
T PLN02972 328 KIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGE--D-SKLIYDLADQGGELCSLRYDLTV 404 (763)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCc--c-hhheEEEECCCCCEEEeCCCChH
Confidence 45799999999999999999999999999999999999999999998653 32 1 3579999886 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-h-hHHHHHHHHHHHHHHHHHHcCc
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-E-QIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-e-qa~~E~~~~l~~~~~il~~LGl 606 (715)
++++++.... ..|+|+|++|+|||+|+++. | |.|||+|+++++|+.. . .+|+| ++.++.++++.||+
T Consensus 405 PiAR~vA~n~----~~p~KrYyiG~VFR~e~pqk--G--R~REF~Q~G~EIIG~~~~~~aDAE---VI~La~E~L~~LGi 473 (763)
T PLN02972 405 PFARYVAMNG----ITSFKRYQIAKVYRRDNPSK--G--RYREFYQCDFDIAGVYEPMGPDFE---IIKVLTELLDELDI 473 (763)
T ss_pred HHHHHHHhCC----CCcceEEEeccEEecCCCCC--C--CCccceEEeEEEEcCCCcchhhHH---HHHHHHHHHHhCCC
Confidence 9998887532 24999999999999999984 9 9999999999999974 3 56888 68999999999999
Q ss_pred E-EEEEEccCC
Q psy10609 607 T-FNLRLSTRP 616 (715)
Q Consensus 607 ~-~~v~l~~~~ 616 (715)
+ |++.+++++
T Consensus 474 ~df~I~INh~~ 484 (763)
T PLN02972 474 GTYEVKLNHRK 484 (763)
T ss_pred CceEEEeCCHH
Confidence 6 999999985
No 50
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.79 E-value=4e-19 Score=201.45 Aligned_cols=225 Identities=18% Similarity=0.234 Sum_probs=162.3
Q ss_pred HHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 439 KIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 439 ~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
.|.++.+.+...- + .+|++||.|.|+.++++|++.|++.|. ..|+.+|.+|+|.+.++|++|||+++|.|-|-..
T Consensus 8 ~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~~ 87 (551)
T TIGR00389 8 SLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVDC 87 (551)
T ss_pred HHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceeec
Confidence 4555555544332 1 389999999999999999999999994 7789999999999999999999999998876542
Q ss_pred ee---------------------------------------------------------------cCceEEEecCChHHH
Q psy10609 514 DV---------------------------------------------------------------ENETYALKPMNCPGH 530 (715)
Q Consensus 514 ~d---------------------------------------------------------------~~~~l~LRPt~e~~~ 530 (715)
.. ++...+|||+++.++
T Consensus 88 ~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGi 167 (551)
T TIGR00389 88 KSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGI 167 (551)
T ss_pred CCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhh
Confidence 10 012567999999999
Q ss_pred HHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcEE
Q psy10609 531 CLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFTF 608 (715)
Q Consensus 531 ~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~~ 608 (715)
+..|++.....+ .||+.++|+|++||||.+++ .||+|+|||+|.|++.||.|+ .....+..+.+....++.+=. .
T Consensus 168 FvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr-~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~--~ 244 (551)
T TIGR00389 168 FINFKRLLQFFRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQM--Q 244 (551)
T ss_pred HHhHHHHHHhcCCCCCeeehhhhHhhhcccCcc-cceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchh--h
Confidence 999998776555 79999999999999999998 899999999999999999995 443444433333322221100 0
Q ss_pred EEEEccCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCcc------ccCCCCccccc-eeeEEeecCCC
Q psy10609 609 NLRLSTRP-EKYLGELEVWNKAEKQLEASLNSFGEPWT------ENPGDGAFYGP-KIDITITDALK 667 (715)
Q Consensus 609 ~v~l~~~~-ek~~gd~e~w~~a~~~L~~~L~~~g~~~~------~~~g~~afYgp-kid~~~~D~~g 667 (715)
...++... .+.+ +.+....+.+....+|.++|++-. ..+.+-|+|.- .+|+.+.-+.|
T Consensus 245 ~~~~~eav~~g~i-~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~G 310 (551)
T TIGR00389 245 ESGIGEAVESGMI-ENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYG 310 (551)
T ss_pred hccHHHHHHhccc-chHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCC
Confidence 00011111 1223 233456667778888999998744 24566799944 47777666554
No 51
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.78 E-value=7.4e-19 Score=194.33 Aligned_cols=153 Identities=19% Similarity=0.272 Sum_probs=134.4
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHH--HcCcEEEecCcccchhhhhhhCcccccCCCce--------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYR--KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF-------------------- 511 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~--~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy-------------------- 511 (715)
+|++||.|.|+.|+++|++.|++.+. +-+..+|.+|+|.+..+|+.|||.+.|.|-|-
T Consensus 30 ~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~ 109 (539)
T PRK14894 30 QGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPN 109 (539)
T ss_pred ccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCC
Confidence 89999999999999999999999884 56778999999999999999999999966533
Q ss_pred ----------------EEeec-----CceEEEecCChHHHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCccee
Q psy10609 512 ----------------SFDVE-----NETYALKPMNCPGHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRV 569 (715)
Q Consensus 512 ----------------~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~ 569 (715)
+...+ +...+|||+++.+++..|++.+...+ .||+-++|+|++||||.+++ .||+|+
T Consensus 110 CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr-~~l~R~ 188 (539)
T PRK14894 110 CGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPR-NFLFRV 188 (539)
T ss_pred CCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCC-Cceeec
Confidence 22211 13578999999999999998776554 79999999999999999998 899999
Q ss_pred eeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 570 RRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 570 REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
|||+|.|++.|+.|+.+.+.+...++....++.++||+
T Consensus 189 REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~ 226 (539)
T PRK14894 189 REFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIP 226 (539)
T ss_pred ccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999877788888888888999999996
No 52
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.2e-19 Score=192.63 Aligned_cols=147 Identities=24% Similarity=0.446 Sum_probs=123.7
Q ss_pred HHHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHHH--cCcEEEecCcccchhhhhhhCcccccCCCce
Q psy10609 438 RKIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYRK--RGFQEVVSPNVYNVKLWQTSGHWAHYSENMF 511 (715)
Q Consensus 438 ~~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~~--~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy 511 (715)
..|+++-+.+...- + .+|+|||.|.|+.|+++|++.|++.|.. -|+.+|.||+|.+.++|++|||+++|.|-|-
T Consensus 10 ~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv 89 (558)
T COG0423 10 VELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLV 89 (558)
T ss_pred HHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCccccccccee
Confidence 34566666554332 2 3899999999999999999999999853 6899999999999999999999999987643
Q ss_pred EE------------------------------------------------------------ee---cCceEEEecCChH
Q psy10609 512 SF------------------------------------------------------------DV---ENETYALKPMNCP 528 (715)
Q Consensus 512 ~~------------------------------------------------------------~d---~~~~l~LRPt~e~ 528 (715)
.. .. ++...+|||++.+
T Consensus 90 ~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQ 169 (558)
T COG0423 90 ECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQ 169 (558)
T ss_pred eccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccc
Confidence 21 11 1346789999999
Q ss_pred HHHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh
Q psy10609 529 GHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ 585 (715)
Q Consensus 529 ~~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq 585 (715)
+++..|++.....+ .||+.++|+|+.||||.+++ .||+|+|||+|.|++.|+.|+.
T Consensus 170 GiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr-~gl~R~REF~QaEiE~Fv~P~~ 226 (558)
T COG0423 170 GIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPR-NGLFRTREFEQAEIEFFVDPEE 226 (558)
T ss_pred hhhhhhHHHHHHhccCCCeEEEeechhhccccCcc-cceeehhhhhhhheeeEECCCc
Confidence 99999998776555 69999999999999999998 8999999999999999999863
No 53
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.77 E-value=3.4e-18 Score=181.33 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=126.0
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGH 530 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~ 530 (715)
.++|++|++|..+.+++.+++.+.+.+.++||++|.||.|++.+++.. ...++||+|.|. |+.++|||..++++
T Consensus 7 ~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~g~~l~LRpD~T~~i 81 (281)
T PRK12293 7 IPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEKNHQISLRADSTLDV 81 (281)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCCCCEEEECCcCCHHH
Confidence 478999999999999999999999999999999999999999988732 235789999885 78999999999999
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEE
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL 610 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v 610 (715)
++++.+.... ..+|+|+||+|+|||+|. |||+|.+++++|.++. + +++.++.++++++|+++.+
T Consensus 82 aR~~a~~~~~-~~~p~r~~Y~g~vfR~~~----------rEf~Q~GvEliG~~~~--~---Evi~la~~~l~~lgl~~~i 145 (281)
T PRK12293 82 VRIVTKRLGR-STEHKKWFYIQPVFRYPS----------NEIYQIGAELIGEEDL--S---EILNIAAEIFEELELEPIL 145 (281)
T ss_pred HHHHHHhccc-CCCceeEEEeccEEecCC----------CcccccCeEeeCCCCH--H---HHHHHHHHHHHHcCCCCEE
Confidence 9988765432 368999999999999973 8999999999999763 2 5789999999999999888
Q ss_pred EEccCC
Q psy10609 611 RLSTRP 616 (715)
Q Consensus 611 ~l~~~~ 616 (715)
.+++++
T Consensus 146 ~ig~~~ 151 (281)
T PRK12293 146 QISNIK 151 (281)
T ss_pred EECCHH
Confidence 999875
No 54
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.75 E-value=3.2e-17 Score=164.49 Aligned_cols=194 Identities=23% Similarity=0.318 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHHHhhhcccCCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIFDHRVRSWRELP 545 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~~~LP 545 (715)
++.+++.+++.+...||++|.||.|++.+.+...|..+ +.+..+.+ .++..+|||+.++++..+++... +++|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~ 75 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP---KDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLP 75 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH---hheeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccCC
Confidence 67889999999999999999999999998887766542 23333333 36788999999999998887665 6899
Q ss_pred eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCc--EEEEEEccCCCCCCCCH
Q psy10609 546 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF--TFNLRLSTRPEKYLGEL 623 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl--~~~v~l~~~~ek~~gd~ 623 (715)
+|++++|+|||.|.++. ++.|++||+|.++++++.+.+....+.+++.++.++++.+|+ ++++..... .
T Consensus 76 ~~lfeig~vfr~e~~~~--~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~-------~ 146 (211)
T cd00768 76 LRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTP-------G 146 (211)
T ss_pred EEEEEEcceeecCCCcc--ccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCc-------h
Confidence 99999999999998753 356899999999999998754334567789999999999997 344432211 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcccccccee-ccCcccccCcEEEcCCCceecc
Q psy10609 624 EVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQL-DFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 624 e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQl-Df~~~~rf~l~Y~~~dg~~~~~ 699 (715)
..|. ++.|++.|+.+.|+.+|..++|+++. .-+..++|+++|.+++++..+|
T Consensus 147 ~~~~------------------------~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p 199 (211)
T cd00768 147 EFSP------------------------GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYP 199 (211)
T ss_pred hhcc------------------------ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCc
Confidence 0010 35689999999999999889999984 4455677999999999998887
No 55
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.74 E-value=2e-17 Score=177.68 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=124.4
Q ss_pred eeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHH
Q psy10609 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLI 533 (715)
Q Consensus 455 G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~ 533 (715)
|++||+|..+..++.+++.+.+.|+++||++|.||.|++.+++...+... .+++|++.|+ |+.++|||..+++++++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~G~~l~LR~D~T~~iaR~ 78 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRSGRVLALRPDLTVPIARY 78 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTTSSEEEE-SSSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecCCcEeccCCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999987654322 3489999876 88999999999999998
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHH-HcCcE-EEE
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYS-IFGFT-FNL 610 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~-~LGl~-~~v 610 (715)
++.... ...|.|+|++|+|||++.++. | |.|||+|+++++|+.+. .+++| ++.++.++++ .+|+. +.+
T Consensus 79 ~a~~~~--~~~~~r~~y~g~vfR~~~~~~--g--~~re~~Q~g~Eiig~~~~~~daE---vi~l~~e~l~~~l~~~~~~i 149 (311)
T PF13393_consen 79 VARNLN--LPRPKRYYYIGPVFRYERPGK--G--RPREFYQCGFEIIGSSSLEADAE---VIKLADEILDRELGLENFTI 149 (311)
T ss_dssp HHHCCG--SSSSEEEEEEEEEEEEETTTT--T--BESEEEEEEEEEESSSSHHHHHH---HHHHHHHHHHHHHTTTSEEE
T ss_pred HHHhcC--cCCCceEEEEcceeeccccCC--C--CCceeEEEEEEEECCCCHHHHHH---HHHHHHHHHHhhcCCCCcEE
Confidence 876532 578999999999999998874 7 99999999999999884 66777 6889999997 99995 999
Q ss_pred EEccCC
Q psy10609 611 RLSTRP 616 (715)
Q Consensus 611 ~l~~~~ 616 (715)
.+++..
T Consensus 150 ~i~h~~ 155 (311)
T PF13393_consen 150 RINHTG 155 (311)
T ss_dssp EEEEHH
T ss_pred EEcCch
Confidence 999874
No 56
>PLN02734 glycyl-tRNA synthetase
Probab=99.73 E-value=4.6e-18 Score=195.49 Aligned_cols=213 Identities=21% Similarity=0.226 Sum_probs=156.5
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEEe------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD------------------ 514 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~------------------ 514 (715)
+|+|||.|.|+.|+++|++.|++.|. ..++-+|.+|+|.+..+|++|||.++|.|-|-+..
T Consensus 99 aG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~~~~~~~RADhlie~~~~~ 178 (684)
T PLN02734 99 AGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLLKDFCEE 178 (684)
T ss_pred ccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcCCCCcEecchHHHHHHHHh
Confidence 89999999999999999999999985 55777999999999999999999999977644210
Q ss_pred -----------------------e------------------------------------------cCceEEEecCChHH
Q psy10609 515 -----------------------V------------------------------------------ENETYALKPMNCPG 529 (715)
Q Consensus 515 -----------------------d------------------------------------------~~~~l~LRPt~e~~ 529 (715)
+ ++..-+|||+|..+
T Consensus 179 ~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRPETAQG 258 (684)
T PLN02734 179 KLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRPETAQG 258 (684)
T ss_pred hhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecccccch
Confidence 0 01246799999999
Q ss_pred HHHHHHhhhcccC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh-HHHHHHHHHHHHHHHHHH----
Q psy10609 530 HCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ-IGDEIVGALDFLRNVYSI---- 603 (715)
Q Consensus 530 ~~~~~~~~~~s~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq-a~~E~~~~l~~~~~il~~---- 603 (715)
++..|++.....+ .||+-.+|+|+.||||.+++ .||+|+|||+|.|++.|+.|+. ...-+.++-+....+|.+
T Consensus 259 iFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR-~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~ 337 (684)
T PLN02734 259 IFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPR-QGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEFLLFPREEQL 337 (684)
T ss_pred heeeHHHHHHhcCCCCCeeeeeccHhhhcccCcc-cceeeechhhhhhhheecCcccccccchhhhhhhhhhcccHhhhh
Confidence 9999998776555 79999999999999999998 8999999999999999999963 222222222332223211
Q ss_pred cCc-EEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcc------ccCCCCccccc-eeeEEeecCCC
Q psy10609 604 FGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWT------ENPGDGAFYGP-KIDITITDALK 667 (715)
Q Consensus 604 LGl-~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~------~~~g~~afYgp-kid~~~~D~~g 667 (715)
-|- +..+.++...++-+-+.+....+.+....+|.++|++-. ..+.+-|+|.- -+|+.+..+.|
T Consensus 338 ~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~G 409 (684)
T PLN02734 338 GGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYG 409 (684)
T ss_pred ccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCCC
Confidence 111 123333222233333455567777888899999999744 24566789944 47777766654
No 57
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.65 E-value=2e-15 Score=166.16 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
.+.+.+.+++.|.++||.+|.||.|++.+++.. +|. ...++||+|.|. |+.++|||..++++++++... ....
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~---~~~~ 81 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENGEELCLRPDFTIPVCRRHIAT---AGGE 81 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHc---CCCC
Confidence 357899999999999999999999999998854 442 345789999885 889999999998888876543 2367
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc--hhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV--EQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~--eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ 616 (715)
|+|+||+|+|||+| +| |.|||+|+++++|+.+ ..+|+| ++.++.++++.+|++ +++.++++.
T Consensus 82 p~R~~Y~g~VfR~~-----~g--r~rEf~Q~GvEiiG~~~~~~aDaE---vi~l~~~~L~~lgl~~~~i~ig~~~ 146 (373)
T PRK12295 82 PARYAYLGEVFRQR-----RD--RASEFLQAGIESFGRADPAAADAE---VLALALEALAALGPGDLEVRLGDVG 146 (373)
T ss_pred CeEEEEEccEEECC-----CC--CCCcceEeeEEeeCCCCCccchHH---HHHHHHHHHHHcCCCceEEEeCCHH
Confidence 99999999999999 26 8999999999999974 367888 688999999999996 999998874
No 58
>KOG1936|consensus
Probab=99.61 E-value=1.9e-15 Score=162.03 Aligned_cols=152 Identities=15% Similarity=0.252 Sum_probs=130.1
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|++||-|..+.+++.+.+.+.+.|+++|+..|.||+++-.+++.+ -|. + .+-+|.++|. |+...|||.-+++
T Consensus 62 tPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGE-d--skLiYdlkDQGGEl~SLRYDLTVP 138 (518)
T KOG1936|consen 62 TPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGE-D--SKLIYDLKDQGGELCSLRYDLTVP 138 (518)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccc-c--cceeEehhhcCCcEEEeecccccH
Confidence 479999999999999999999999999999999999999999998854 332 1 2568999886 7788999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch--hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e--qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++.+.. +---++.|+++++||++.+.-++| |+|||+|+|..|.|.-+ -.++| ++.+..++|+.|||.
T Consensus 139 fARylAmN----ki~sikRy~iAkVyRRd~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE---~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 139 FARYLAMN----KITSIKRYHIAKVYRRDQPAMTRG--RYREFYQCDFDIAGQFDPMIPDAE---CLKIVVEILSRLGIG 209 (518)
T ss_pred HHHHHHHc----ccccceeeeEEEEEeccCchhhch--hhhhhhccCccccccCCCCCchHH---HHHHHHHHHhhcCcc
Confidence 88876633 223478999999999999965579 99999999999999744 45666 788999999999996
Q ss_pred -EEEEEccC
Q psy10609 608 -FNLRLSTR 615 (715)
Q Consensus 608 -~~v~l~~~ 615 (715)
|.+.+|+|
T Consensus 210 d~~iKvNhR 218 (518)
T KOG1936|consen 210 DYGIKVNHR 218 (518)
T ss_pred ceEEEecHH
Confidence 99999998
No 59
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.57 E-value=5.7e-15 Score=161.00 Aligned_cols=152 Identities=18% Similarity=0.277 Sum_probs=133.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.+.|++|.+|..+.....+.+.+.+.|.++||+.|.||+|++.+.+... |+ .....||++.|. |+.++|||.-+++
T Consensus 5 lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g~~l~LRpD~T~p 82 (390)
T COG3705 5 LPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETGGRLGLRPDFTIP 82 (390)
T ss_pred CCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCCCeEEecccccHH
Confidence 3689999999999999999999999999999999999999999988543 43 345789999886 7889999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++++.+...+ .|.|++|.|++||.. .+. +| |..||+|.+++.++.+. +||+| ++.++..+++.+|++
T Consensus 83 VaR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~~-~g--~~~Ef~QaGiEllG~~~~~ADaE---vi~la~~~L~~~gl~~ 152 (390)
T COG3705 83 VARIHATLLAG---TPLRLSYAGKVFRAR-EGR-HG--RRAEFLQAGIELLGDDSAAADAE---VIALALAALKALGLAD 152 (390)
T ss_pred HHHHHHHhcCC---CCceeeecchhhhcc-hhc-cC--cccchhhhhhHHhCCCcchhhHH---HHHHHHHHHHHcCCcC
Confidence 98888766543 899999999999999 444 57 88899999999999975 88998 688999999999997
Q ss_pred EEEEEccC
Q psy10609 608 FNLRLSTR 615 (715)
Q Consensus 608 ~~v~l~~~ 615 (715)
+++.+++-
T Consensus 153 ~~l~LG~~ 160 (390)
T COG3705 153 LKLELGHA 160 (390)
T ss_pred eEEEeccH
Confidence 99999885
No 60
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.46 E-value=7.5e-13 Score=145.81 Aligned_cols=133 Identities=18% Similarity=0.286 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccc--ccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA--HYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~--~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
...|++.+++.+..+||+||.||.|.+.+.|+..|+.. .+.++||.+. +.++|||+.+|+++..++.. ..+.++
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id---eel~LRpsLtPsLlr~la~n-~k~~~~ 281 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPGLYNYLRKL-DRILPD 281 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC---CceEehhhhHHHHHHHHHhh-hhcccC
Confidence 56788888888888999999999999999998888753 3456788762 47899999999988876532 234578
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 611 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~ 611 (715)
|+|++++|+|||+|.++. + +++||+|.++.+++... .+.++..++.++|+.|||+|++.
T Consensus 282 P~RIFEIG~VFR~E~~g~--~--hlrEf~Ql~~~iiGs~~----~f~dL~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 282 PIKIFEIGPCYRKESDGK--E--HLEEFTMVNFCQMGSGC----TRENLENIIDDFLKHLGIDYEII 340 (417)
T ss_pred CeeEEEEeceEecCCCCC--C--CcceEEEEEEEEeCCch----HHHHHHHHHHHHHHHCCCCcEEe
Confidence 999999999999998774 5 89999999999886532 23346688889999999887654
No 61
>KOG2298|consensus
Probab=99.45 E-value=2e-14 Score=155.50 Aligned_cols=213 Identities=20% Similarity=0.222 Sum_probs=150.1
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceE--------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-------------------- 512 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~-------------------- 512 (715)
+|.+||.|.|+.+..+|.+.|++.|. +-+.-+|..|.|.+..++++|||.++|.+=|-+
T Consensus 36 sGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvkD~ktGecfRADHLvk~~~~r 115 (599)
T KOG2298|consen 36 SGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVKDEKTGECFRADHLVKDAEER 115 (599)
T ss_pred ccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHHhcCccccceehhhHHHHHHHHh
Confidence 99999999999999999999999984 779999999999999999999999998765431
Q ss_pred ---------------------------------------------------------Eee---cCceEEEecCChHHHHH
Q psy10609 513 ---------------------------------------------------------FDV---ENETYALKPMNCPGHCL 532 (715)
Q Consensus 513 ---------------------------------------------------------~~d---~~~~l~LRPt~e~~~~~ 532 (715)
... ++-.-+|||++..+...
T Consensus 116 l~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~Fl 195 (599)
T KOG2298|consen 116 LKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQFL 195 (599)
T ss_pred hhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccccccc
Confidence 100 12245799999999998
Q ss_pred HHHhhh-cccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHH-c---Cc
Q psy10609 533 IFDHRV-RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI-F---GF 606 (715)
Q Consensus 533 ~~~~~~-~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~-L---Gl 606 (715)
.|+... .+-+.||+--+++|+.||+|.+++ .||+|+|||+|.|++-|+.|. .+..-+..+...-..++.+ . |-
T Consensus 196 NFkrlle~N~~KlPFA~AqiG~~fRNEISpR-sGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~~l~l~~~~~q~~g~ 274 (599)
T KOG2298|consen 196 NFKRLLEFNQGKLPFASAQIGKSFRNEISPR-SGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAEKLRLFPRDKQLSGQ 274 (599)
T ss_pred cHHHHHHhcCCCCcchHHHhchHhhhccCcc-cCceeEEEeehHHhhccCCCCCCCChhhhhhhhhhhhhcchhhhhccc
Confidence 888654 234579999999999999999998 899999999999999999984 4444333332222222211 0 11
Q ss_pred E-EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccc------cCCCCccccce-eeEEeecCCC
Q psy10609 607 T-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTE------NPGDGAFYGPK-IDITITDALK 667 (715)
Q Consensus 607 ~-~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~------~~g~~afYgpk-id~~~~D~~g 667 (715)
. -++.++....+-+-+.++-....+.+..+|.+.|++-+. ...+=|+|.-. +|..+..+.|
T Consensus 275 ~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYG 343 (599)
T KOG2298|consen 275 SAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYG 343 (599)
T ss_pred hhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccC
Confidence 1 122222211232334556667778888889999987442 33445666332 4544444433
No 62
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.41 E-value=2.5e-12 Score=141.49 Aligned_cols=165 Identities=15% Similarity=0.188 Sum_probs=121.2
Q ss_pred hhhHHHHhhhcCcceeccC-C-CeeEE----eCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccc--c
Q psy10609 434 KRDHRKIGREQELFFFHEL-S-PGSCF----FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA--H 505 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~-~-~G~~~----~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~--~ 505 (715)
+.|...++.+.+.=.|++. + .+-.+ +......-+..|++.+++.|..+||++|.||+|++.+.++..++.+ .
T Consensus 203 ~~~~~~v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~e 282 (453)
T TIGR02367 203 PEDEISLNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTE 282 (453)
T ss_pred CchhhhhHHhccccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCc
Confidence 3445555666553334432 1 12222 2333445678999999999999999999999999888887666542 3
Q ss_pred cCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-
Q psy10609 506 YSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE- 584 (715)
Q Consensus 506 ~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e- 584 (715)
..++||.+. +.++|||+.+|++..++....+ ...+|+|+|++|+|||+|.++. | |+|||+|.++.+++...
T Consensus 283 I~n~Iyk~e---e~lvLRPdLTPsLaR~La~N~~-~l~~PqKIFEIGkVFR~E~~~~--t--hlREF~QL~~eIaG~~at 354 (453)
T TIGR02367 283 LSKQIFRVD---KNFCLRPMLAPNLYNYLRKLDR-ALPDPIKIFEIGPCYRKESDGK--E--HLEEFTMLNFCQMGSGCT 354 (453)
T ss_pred ccccceEec---CceEecccCHHHHHHHHHHhhh-hccCCeeEEEEcCeEecCCCCC--C--CcCeEEEEEEEEECCCCC
Confidence 566888863 3689999999999887654321 2368999999999999998875 6 99999999999998764
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcEEEEE
Q psy10609 585 QIGDEIVGALDFLRNVYSIFGFTFNLR 611 (715)
Q Consensus 585 qa~~E~~~~l~~~~~il~~LGl~~~v~ 611 (715)
.++ +..++.++++.||+.|++.
T Consensus 355 faD-----lealL~e~Lr~LGIdfeit 376 (453)
T TIGR02367 355 REN-----LEAIIKDFLDHLEIDFEIV 376 (453)
T ss_pred HHH-----HHHHHHHHHHHCCCceEEe
Confidence 332 3358889999999988774
No 63
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.24 E-value=5.5e-11 Score=125.64 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceE-Eee-cCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-FDV-ENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~-~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
.-++.+++.+++.|+++||++|.||.|++.+++..+++ ...+.+++ +.+ +|+.++|||..+++++++++...
T Consensus 8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~--~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~---- 81 (272)
T PRK12294 8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHE--DLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP---- 81 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhcccc--chhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC----
Confidence 44678999999999999999999999999999743332 22234443 544 58999999999999988876432
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EE-EEEccC
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FN-LRLSTR 615 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~-v~l~~~ 615 (715)
.-|.|+||+|+|||++. +|+|.+++++|....++.| ++.++.+.++.+|.. +. +.+++.
T Consensus 82 ~~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~~~a~~e---~l~la~~~l~~~g~~~~~~i~lGh~ 142 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE-----------AAVQVGIENYAPSLANVQQ---SFKLFIQFIQQQLRDNVHFVVLGHY 142 (272)
T ss_pred CCCceEEEeccEeccCC-----------CcceeceEEECCCchhHHH---HHHHHHHHHHHhCCCCCcEEEeccH
Confidence 34679999999999873 3799999999955455555 568888999999654 43 566664
No 64
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.6e-11 Score=140.80 Aligned_cols=106 Identities=28% Similarity=0.387 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCce----------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 283 EGLMKDIVKEKQPFER----------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 283 e~lm~~aV~~l~P~~r----------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
.++|..||++++|.-. ..+|++|..+|++ .|+++++++.++.+..
T Consensus 34 ah~l~~av~~l~p~~~~gp~ie~gfyyd~~~~~~~~~~dl~~ie~---~m~~i~~~~~~~~~~~---------------- 94 (589)
T COG0441 34 AHVLAQAVKRLYPDVTIGPVIEEGFYYDFDVKEPITPEDLLKIEK---EMKEIAKENLPIEREV---------------- 94 (589)
T ss_pred HHHHHHHHHHhCCCccccCcccceeEEeeccCCCCCHHHHHHHHH---HHHHHHHhcCceEEEE----------------
Confidence 7799999999999632 2489999999999 8999999999888874
Q ss_pred cCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 347 RHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 347 ~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.+.|. ++|+.+++.++ ..+|+|++|+|.|+|+|||+||| |.+ .|+|++++|.+|.
T Consensus 95 --~~~e~a~~~f~--~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t---~~i-~fkl~~~~~ayw~ 155 (589)
T COG0441 95 --VSREEARAPFG--PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPST---GKI-AFKLLKLAGAYWR 155 (589)
T ss_pred --ecHHHHHHHhh--hhHHHHHhcCC--CCceeEecCccccccCCCCCCcc---ceE-EEEEEEecchhhc
Confidence 69999999999 99999999986 78999999999999999999999 889 9999999999997
No 65
>PLN02837 threonine-tRNA ligase
Probab=99.19 E-value=2.7e-11 Score=141.66 Aligned_cols=127 Identities=25% Similarity=0.309 Sum_probs=106.9
Q ss_pred ccccccCCCChHH-------HHHHHHHHHHhcCCCce-----------------eecCHHHHHHHHhcChhHHHHHhhcc
Q psy10609 269 QYFSLVSTLDFPV-------MEGLMKDIVKEKQPFER-----------------LEMKKEDLIEMFKYNPFKLRILKEKV 324 (715)
Q Consensus 269 ~~ve~It~~d~~g-------Le~lm~~aV~~l~P~~r-----------------~~vs~eda~~If~~~~~m~eLI~e~~ 324 (715)
..+++++.++.++ +.++|..|+++++|..+ .++|.+++.+|++ .|.++|+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~~~lt~edl~~IEk---~m~~iI~~n~ 106 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKK---EMDRIISRNL 106 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecCCCCCHHHHHHHHH---HHHHHHHcCC
Confidence 4566676666554 47899999999998542 2579999999999 8999999999
Q ss_pred CCCcEEEEeeCCcccccCCccccCcChhhHHhhccc--CcchhhccccccCCCceEEEeeCC-eeeeccCcCCCCCccCC
Q psy10609 325 NTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKY--NPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHNSSTYWEG 401 (715)
Q Consensus 325 pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~--~~~Kl~Ll~~~~~~~~vtlY~~g~-~~D~c~GP~vpsT~~~G 401 (715)
|+.+.. +++++|.++|.. +++|.+|++... .+.|++|+||+ |+|+|+||||||| |
T Consensus 107 pI~~~~------------------v~~eEA~~~f~~~~~~~k~~Ll~~~~-~~~Iriy~ig~~~~D~c~GpHv~sT---g 164 (614)
T PLN02837 107 PLVREE------------------VSREEAQKRIMAINEPYKLEILEGIK-EEPITIYHIGEEWWDLCAGPHVERT---G 164 (614)
T ss_pred CEEEEE------------------ecHHHHHHHHHHcCCchhHHHhccCC-CCeEEEEEECCeEEEecCCCCcccc---c
Confidence 998874 799999999985 388999988764 56899999997 8999999999999 7
Q ss_pred Cc--chhhhhhhhcccCCChh
Q psy10609 402 KA--DAESLQRVYGISFPDNK 420 (715)
Q Consensus 402 ~l--k~f~L~r~~G~~~~~~~ 420 (715)
.+ ++|+|++++|.+|....
T Consensus 165 ~I~~~~~kl~~~~g~ywrg~~ 185 (614)
T PLN02837 165 KINKKAVELESVAGAYWRGDE 185 (614)
T ss_pred ccccceEEEEEeehhhhcccc
Confidence 78 99999999999999433
No 66
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.16 E-value=4.8e-11 Score=139.02 Aligned_cols=113 Identities=25% Similarity=0.334 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 282 MEGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
+.++|..|+++.+|... ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 13 ~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~---~m~~lI~~~~pi~~~~------------- 76 (575)
T PRK12305 13 AAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEK---KMKKIIKRGLPFEREE------------- 76 (575)
T ss_pred HHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE-------------
Confidence 57899999999998532 1478899999999 8999999999988874
Q ss_pred ccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCCh
Q psy10609 344 PHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDN 419 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~ 419 (715)
+++++|.++|..+.+|.++++..+ .+.|++|+||+|+|+|+||||||| |.++.|+|+.++|++|...
T Consensus 77 -----v~~eeA~~~f~~~~~k~~l~~~~~-~~~vri~~ig~~~d~c~Gthv~~T---~~i~~f~i~~~~~~~~~~~ 143 (575)
T PRK12305 77 -----VSREEAREEFANEPYKLELIDDIP-EEGITIYDNGDFEDLCRGPHVPNT---KFIKAFKLTSVAGAYWRGD 143 (575)
T ss_pred -----ecHHHHHHhCCcChhHHHhhhhcC-CCeEEEEEECCEEEECCCCCCCCc---cCCceeEEEEEcceEECCC
Confidence 799999999998899999998876 358999999999999999999999 7799999999999999853
No 67
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.13 E-value=7e-11 Score=137.28 Aligned_cols=112 Identities=28% Similarity=0.408 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 282 MEGLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
+.++|..|+++.+|... .++|.+++.+|.+ .|.++|+++.|+.+..
T Consensus 4 ~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~~t~eel~~Ie~---~m~~lI~~~~pi~~~~------------- 67 (563)
T TIGR00418 4 IAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEKIEK---DMKEIAKKNYPVAKLS------------- 67 (563)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCCCCHHHHHHHHH---HHHHHHhcCCCEEEEE-------------
Confidence 46889999999998542 2589999999998 8999999999998874
Q ss_pred ccccCcChhhHHhhcc-cCcchhhccccccCCCceEEEeeCC-eeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 344 PHVRHTGKIKAFKVTK-YNPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~-~~~~Kl~Ll~~~~~~~~vtlY~~g~-~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.++|. .+.+|.+|++.+...++|++|+||+ |+|||+|||||+| |.++.|+|..|.+++|-
T Consensus 68 -----~~~eeA~~~f~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~T---g~i~~f~l~~~~~g~~l 135 (563)
T TIGR00418 68 -----VSLEEALEAFKVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNT---SFIKAFKLEKVAGAYWR 135 (563)
T ss_pred -----ECHHHHHHHHhccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCC---CCCceeEEEEeccceEe
Confidence 79999999999 3488999999874457899999999 9999999999999 77999999999998886
No 68
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.10 E-value=1e-10 Score=95.69 Aligned_cols=59 Identities=44% Similarity=0.578 Sum_probs=55.5
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
+.|++|||+.+.+++ ++|+.|+|..|++++++.++.|+|||++|||++||+.+|.|+++
T Consensus 1 I~v~lpdG~~~~~~~-g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKELPE-GSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEEEET-TBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEE
T ss_pred CEEECCCCCeeeCCC-CCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEE
Confidence 578999999999998 79999999999999999999999999999999999999999987
No 69
>PRK07080 hypothetical protein; Validated
Probab=99.05 E-value=2.5e-09 Score=113.18 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=123.5
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee------------------
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV------------------ 515 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d------------------ 515 (715)
.|.|-.-+.=-.+.+.|...+...-...|+.++..|.+.+.+.|+++|++..|-+-|+.+..
T Consensus 37 ~g~ygrs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V~~~~g~~~e~~~ll~~~~~~ 116 (317)
T PRK07080 37 DGLYGRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTVHSFCGNEAEHRRLLACLDRG 116 (317)
T ss_pred CccccccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceeecCCCCCCHHHHHHHHHHHhc
Confidence 56655544444455555555554444455999999999999999999999999888886531
Q ss_pred -------cCceEEEecCChHHHHHHHHhh-hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHH
Q psy10609 516 -------ENETYALKPMNCPGHCLIFDHR-VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIG 587 (715)
Q Consensus 516 -------~~~~l~LRPt~e~~~~~~~~~~-~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~ 587 (715)
+...++|.|.+|.+++.++.++ .... +- ..+--.|.|||+|.+ +++-|+.+|+|-|...+|+++++.
T Consensus 117 ~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~-~g-~~~dv~g~CFR~E~s---~dl~Rl~~F~mrE~V~iGt~e~v~ 191 (317)
T PRK07080 117 EDWTESQKPTDVVLTPAACYPVYPVLARRGALPA-DG-RLVDVASYCFRHEPS---LDPARMQLFRMREYVRIGTPEQIV 191 (317)
T ss_pred CchhhhcCCCcceecccccccchhhhccCcccCC-CC-cEEEeeeeeeccCCC---CCcHHHhheeeeEEEEecCHHHHH
Confidence 1236899999999999887754 2322 12 455566999999996 478999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCC
Q psy10609 588 DEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGE 622 (715)
Q Consensus 588 ~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd 622 (715)
+-.+..++.+..+.+.|||++.+...+- -|+|.
T Consensus 192 ~~r~~w~e~~~~l~~~LgL~~~ve~AnD--PFF~~ 224 (317)
T PRK07080 192 AFRQSWIERGTAMADALGLPVEIDLAND--PFFGR 224 (317)
T ss_pred HHHHHHHHHHHHHHHHhCCceeEeecCC--ccccc
Confidence 7777788999999999999999987664 45443
No 70
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.97 E-value=3.6e-09 Score=120.96 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=109.3
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch-------------------hhhhhhC-c---cc-----c
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-------------------KLWQTSG-H---WA-----H 505 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~-------------------el~~~sG-~---~~-----~ 505 (715)
+| ++++|.....++.+++.+++.|..+||++|.+|.++.. +.|..+. . .+ .
T Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~ 301 (489)
T PRK04172 223 PP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVER 301 (489)
T ss_pred CC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHH
Confidence 45 88899999999999999999999999999999999954 3332211 0 00 0
Q ss_pred c------------CCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeE
Q psy10609 506 Y------------SENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRF 572 (715)
Q Consensus 506 ~------------~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REF 572 (715)
+ .-=+|.++++ ++.++|||.++++.++++.. ....|+|+|++|+|||+|..++ | |++||
T Consensus 302 v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~~d~--~--~l~Ef 373 (489)
T PRK04172 302 VKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDTIDA--T--HLPEF 373 (489)
T ss_pred HHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCCCCc--c--cCCch
Confidence 0 0014555544 56799999998888887765 2368999999999999998764 5 77999
Q ss_pred eEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEE
Q psy10609 573 QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNL 610 (715)
Q Consensus 573 tq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v 610 (715)
+|.++.+++.+-. +.+++.++..+++.+|++ +++
T Consensus 374 ~ql~~~i~G~~~~----f~elkg~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 374 YQLEGIVMGEDVS----FRDLLGILKEFYKRLGFEEVKF 408 (489)
T ss_pred heEEEEEEeCCCC----HHHHHHHHHHHHHHhCCceEEE
Confidence 9999999997421 345778899999999995 443
No 71
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=98.69 E-value=5.5e-08 Score=112.09 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-ceeecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGG-CLCYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
.-..|||++|||+.|++++||. ..+.|..+ .+++|+|+.....
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~----------------------------------- 496 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEK----------------------------------- 496 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCC-----------------------------------
Confidence 5689999999999999999987 45777544 6789999975322
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
++.+++..++..|.++|+++.|+....
T Consensus 497 -----------------------------------------------------it~edL~~IE~~vNeiI~~n~pV~~~~ 523 (594)
T PRK01584 497 -----------------------------------------------------MTDDEIKKVEDIVNLQIKNDLSVKKEV 523 (594)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 455667777788888888888777777
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEE
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAY 380 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY 380 (715)
++.++|.+... ..+ |. ... .+.|.+|
T Consensus 524 ~s~eEA~~~~~-----~~l--------------------------------------f~----------e~y-~~~VRVV 549 (594)
T PRK01584 524 MSLEEAREKGA-----MAL--------------------------------------FG----------EKY-EDIVKVY 549 (594)
T ss_pred cCHHHHHhcch-----hhh--------------------------------------cc----------ccC-CCcEEEE
Confidence 77776665321 001 10 000 2568899
Q ss_pred eeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 381 RCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 381 ~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
++|+| ++.|.|+||++| |.++.|++++..
T Consensus 550 ~Igd~d~elCGGTHV~nT---geIG~fkI~s~~ 579 (594)
T PRK01584 550 EIDGFSKEVCGGPHVENT---GELGTFKIQKEQ 579 (594)
T ss_pred EECCeeeeCCCCCCCCCc---ccCceEEEEecc
Confidence 99999 899999999999 779999888765
No 72
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.54 E-value=5.2e-08 Score=79.76 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=54.9
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
|+|++|||+.+++++ |+|+.|+|+.|++.+++.+++|+|||+.++ +++++++++.++++|
T Consensus 1 I~v~lpdG~~~~~~~-g~T~~d~A~~I~~~l~~~~~~A~Vng~~vd--l~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPE-GSTVLDVAYSIHSSLAKRAVAAKVNGQLVD--LDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEET-TBBHHHHHHHHSHHHHHCEEEEEETTEEEE--TTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCC-CCCHHHHHHHHCHHHHhheeEEEEcCEECC--CCCCcCCCCEEEEEC
Confidence 689999999999998 999999999999999999999999998885 589999999999875
No 73
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.53 E-value=6.4e-07 Score=101.16 Aligned_cols=140 Identities=14% Similarity=0.185 Sum_probs=98.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh------hhCcccccCCCceEEeec-----------------
Q psy10609 460 QPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ------TSGHWAHYSENMFSFDVE----------------- 516 (715)
Q Consensus 460 lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~------~sG~~~~~~~emy~~~d~----------------- 516 (715)
.+....-...+.+.++++|...||+++.+|..+-.+.|. -..|-..-..+.|.+++.
T Consensus 224 ~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk 303 (494)
T PTZ00326 224 GGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVK 303 (494)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHH
Confidence 344455567888999999999999999888544444442 223322222345655421
Q ss_pred ---------------------CceEEEecCChHHHHHHHHhhhccc---CC-CCeEEEEeccCcccCCCCCCCCcceeee
Q psy10609 517 ---------------------NETYALKPMNCPGHCLIFDHRVRSW---RE-LPLRMADFGVLHRNELSGALTGLTRVRR 571 (715)
Q Consensus 517 ---------------------~~~l~LRPt~e~~~~~~~~~~~~s~---~~-LPlrl~~~g~~FR~E~~~~l~GL~R~RE 571 (715)
...++||+-+++..++++......+ .. .|+|++++|+|||+|...+ + |++|
T Consensus 304 ~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Da--t--H~~e 379 (494)
T PTZ00326 304 KVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDA--T--HLAE 379 (494)
T ss_pred HHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCC--C--cCce
Confidence 1468999977777667666543221 22 3999999999999999875 6 9999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
|+|+|+.+++..- +.++ ++.++.++++++|+.
T Consensus 380 FhQ~Eg~vi~~~~-s~~~---L~~~l~~f~~~lG~~ 411 (494)
T PTZ00326 380 FHQVEGFVIDRNL-TLGD---LIGTIREFFRRIGIT 411 (494)
T ss_pred eEEEEEEEEeCCC-CHHH---HHHHHHHHHHhcCCC
Confidence 9999999998764 3343 678889999999984
No 74
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.29 E-value=7.3e-06 Score=86.90 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
+++..+.+.+++.|.++||.+|.||.|.... +|. .-+.|.+.. .|+.++|+-..+-....+. .+.
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~----~~~----~~~~f~~~~~~~g~~~~L~~Spql~~~~~~----~~~- 68 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT----GGA----GARPFLVKYNALGLDYYLRISPQLFKKRLM----VGG- 68 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC----Ccc----ccceEEeeecCCCCcEEeecCHHHHHHHHH----hcC-
Confidence 5678999999999999999999999998642 221 124577743 3788999932222211111 121
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGA 593 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~ 593 (715)
+ -|++++++|||+|..+ .+ |++||+|.|++.-..+ ++.-...+++
T Consensus 69 -~-~~vf~i~~~fR~e~~~--~~--hl~EF~~le~e~~~~~~~dvm~~~e~l 114 (269)
T cd00669 69 -L-DRVFEINRNFRNEDLR--AR--HQPEFTMMDLEMAFADYEDVIELTERL 114 (269)
T ss_pred -C-CcEEEEecceeCCCCC--CC--cccceeEEEEEEecCCHHHHHHHHHHH
Confidence 2 1999999999999544 35 9999999999965443 4444444333
No 75
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.28 E-value=1.7e-06 Score=93.42 Aligned_cols=114 Identities=15% Similarity=0.038 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..+.+.+++.|.++||.+|.||+|....... .+...+..+ |.+.+ .|+.++|+-..+..+..++. +.
T Consensus 5 l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~--~~~~~f~~~-y~~~~~~~~~~~~L~~SPe~~~kr~la----~~ 77 (306)
T PRK09350 5 LLKRAKIIAEIRRFFADRGVLEVETPILSQATVTD--IHLVPFETR-FVGPGASQGKTLWLMTSPEYHMKRLLA----AG 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCC--ccCCceeee-eccccccCCcceEEecCHHHHHHHHhh----cc
Confidence 46788999999999999999999999998744321 122222222 33322 26788999322222322222 11
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIV 591 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~ 591 (715)
+ -|+|++|+|||+|.++ .+ +..||||.|++..+.+ ++.-.+.+
T Consensus 78 --~-~rvf~i~~~FR~e~~~--~~--H~~EFt~lE~y~~~~d~~dlm~~~E 121 (306)
T PRK09350 78 --S-GPIFQICKSFRNEEAG--RY--HNPEFTMLEWYRPHYDMYRLMNEVD 121 (306)
T ss_pred --c-cceEEecceeecCCCC--CC--CCcHHHhhhhhhhCCCHHHHHHHHH
Confidence 2 3999999999999985 36 8999999999876554 34334433
No 76
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.26 E-value=1.9e-06 Score=68.75 Aligned_cols=58 Identities=52% Similarity=0.851 Sum_probs=53.1
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++++++|+...++. ++|+.++++.++......+++|++||+++||++++..+++++++
T Consensus 2 ~i~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i 59 (61)
T cd01667 2 KITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEII 59 (61)
T ss_pred EEEcCCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEE
Confidence 57889999888877 89999999999887778899999999999999999999999998
No 77
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.02 E-value=4.8e-05 Score=79.73 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh-hhhhhC----cccccCCCceEEee--c--CceEEEecCChHHHHHH
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSG----HWAHYSENMFSFDV--E--NETYALKPMNCPGHCLI 533 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~sG----~~~~~~~emy~~~d--~--~~~l~LRPt~e~~~~~~ 533 (715)
...-...+.+.+++.|...||+++..|.++... .|..-. |-..-..+.|.+.. . .+..+||..+.+.....
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~ 94 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRT 94 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHH
Confidence 344567788999999999999999999997643 344322 22112234565532 1 46789999888877665
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc-CcEEEEE
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GFTFNLR 611 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L-Gl~~~v~ 611 (715)
. .+.+..|+|++++|+|||+|...+. .+.+|+|.|+-+.+..-. +..+..+...+++.| |...+++
T Consensus 95 l----~~~~~~p~kif~iG~VyR~D~~D~t----h~~~f~Qleg~~~~~~~~----f~~Lk~~l~~l~~~lfG~~~~~r 161 (247)
T PF01409_consen 95 L----NKHRPPPIKIFEIGKVYRRDEIDAT----HLPEFHQLEGLVVDKNVT----FEDLKGTLEELLKELFGIDVKVR 161 (247)
T ss_dssp H----TTTSHSSEEEEEEEEEESSSCSBSS----BESEEEEEEEEEEETTE-----HHHHHHHHHHHHHHHHTTTEEEE
T ss_pred H----HHhcCCCeEEEecCceEecCCcccc----cCccceeEeeEEEecccc----hhHHHHHHHHHHHHHhhcccceE
Confidence 5 2345689999999999999996642 578999999987765422 233567777888888 8764443
No 78
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.89 E-value=9.4e-05 Score=80.52 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..|.+.+++.|.++||.+|.||+|+.... .|+. +.|++.--++.++|+...+-..-.+.. +
T Consensus 24 ~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~---e~~~-----~~f~~~~~~~~~yL~~Spql~lk~l~~----~--- 88 (322)
T cd00776 24 FRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGGA-----ELFKVSYFGKPAYLAQSPQLYKEMLIA----A--- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC---CccC-----CccccccCCCcceecCCHHHHHHHHHH----h---
Confidence 567889999999999999999999999987321 1222 234432235677787543332222221 1
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC-c-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT-V-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~-~-eqa~~E~~~~l 594 (715)
-=|+|++|+|||+|.+.. + -...||||.|++.... + ++..+..++++
T Consensus 89 -~~~vf~i~~~FR~E~~~~--~-rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll 137 (322)
T cd00776 89 -LERVYEIGPVFRAEKSNT--R-RHLSEFWMLEAEMAFIEDYNEVMDLIEELI 137 (322)
T ss_pred -hhhhEEeccccccCCCCc--C-CCcceeeccceeeeccCCHHHHHHHHHHHH
Confidence 248999999999998652 1 2578999999998665 3 45555544444
No 79
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.87 E-value=8.8e-05 Score=79.18 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
+++.++.+.+++.|.+.||.+|.||.|..... .|. .+ |.+.. .+..+.|+- +.. ++...+...
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~---~g~----~~--f~~~~~~~~~~~~~L~~-Spq----l~lk~ll~~ 67 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP---EGA----RD--FLVPSRLHPGKFYALPQ-SPQ----LFKQLLMVS 67 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC---CCC----CC--ceeccccCCCceeeccc-CHH----HHHHHHHhc
Confidence 46788999999999999999999999975332 121 11 32211 233455663 222 233222211
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.++. | |..||+|.|++.-..+ ++.-++.++++
T Consensus 68 -g~-~~v~~i~~~fR~e~~~~--~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li 115 (280)
T cd00777 68 -GF-DRYFQIARCFRDEDLRA--D--RQPEFTQIDIEMSFVDQEDIMSLIEGLL 115 (280)
T ss_pred -Cc-CcEEEeccceeCCCCCC--C--ccceeEEeEeeeccCCHHHHHHHHHHHH
Confidence 12 48999999999999885 6 8889999999976544 45555544444
No 80
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.86 E-value=2.9e-05 Score=61.41 Aligned_cols=58 Identities=31% Similarity=0.358 Sum_probs=52.2
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++.+++|+.+.+.+ ++|+.|+++.++......+++|++||.+.||+.++..++.++++
T Consensus 2 ~~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i 59 (60)
T cd01616 2 IIFTPDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEe
Confidence 56778888888877 89999999999887778899999999999999999999999987
No 81
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.84 E-value=0.00042 Score=75.32 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=91.2
Q ss_pred CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhh----CcccccCCCceEEeecCceEEEecCChH
Q psy10609 454 PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTS----GHWAHYSENMFSFDVENETYALKPMNCP 528 (715)
Q Consensus 454 ~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~s----G~~~~~~~emy~~~d~~~~l~LRPt~e~ 528 (715)
+| +.+.+-...-...+.+.+++.|...||+++.+|.+++... |..- .|-..-..+.|.+ ++..+||..+.|
T Consensus 98 p~-~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp 173 (339)
T PRK00488 98 PG-RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSP 173 (339)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcH
Confidence 45 3334444556778999999999999999999999986542 3322 2211112245555 245789998887
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
...+.... ...|+|+++.|+|||++...++ +..+|+|.|+-+....-. +..+......+++.+
T Consensus 174 ~qir~L~~-----~~~Pirif~~G~VyR~D~~Dat----H~~~FhQleglvvd~~vt----f~dLK~~L~~fl~~~ 236 (339)
T PRK00488 174 VQIRTMEK-----QKPPIRIIAPGRVYRNDSDDAT----HSPMFHQVEGLVVDKNIS----FADLKGTLEDFLKAF 236 (339)
T ss_pred HHHHHHHh-----cCCCeEEEEeeeEEEcCCCCcc----cCcceeeEEEEEEeCCCC----HHHHHHHHHHHHHHH
Confidence 77665543 4689999999999999985432 679999999988876521 223344555566655
No 82
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.80 E-value=0.00043 Score=75.64 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe-----ecCceEEEecCChHHHHHHHHhhh
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-----VENETYALKPMNCPGHCLIFDHRV 538 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~-----d~~~~l~LRPt~e~~~~~~~~~~~ 538 (715)
.+++..|.+.+++.|.+.||.+|.||.|..... .| ..+.|.+. --++.+.|+...+...-.+....
T Consensus 22 ~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~---~~-----~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g- 92 (335)
T PF00152_consen 22 LRIRSAILQAIREFFDKRGFIEVDTPILTSSTC---EG-----GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEE---SEESSSS---SS-----SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhCCceEEcCceeecccc---Cc-----cccccccccchhhhcccceecCcChHHHHhhhcccc-
Confidence 567889999999999999999999999977431 11 34567777 22677889876665444333321
Q ss_pred cccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHH
Q psy10609 539 RSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLR 598 (715)
Q Consensus 539 ~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~ 598 (715)
+ =|+|++|+|||+|.+ +. .-.-||||.|++.-..+ ++.-+..++++..+.
T Consensus 93 -----~-~~vf~i~~~FR~E~~~~~----rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~ 144 (335)
T PF00152_consen 93 -----L-ERVFEIGPCFRNEESRTR----RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIF 144 (335)
T ss_dssp -----H-SEEEEEEEEE-BSSSCBT----TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHH
T ss_pred -----c-hhhhheecceeccCcccc----cchhhhhhhhhccccCcHHHhHHHHHHHHHHHH
Confidence 1 389999999999998 43 13469999999996544 455555555554443
No 83
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=97.71 E-value=7.4e-05 Score=90.97 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.9
Q ss_pred CceEEEeeCC-eeeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 375 PTTTAYRCGP-LIDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 375 ~~vtlY~~g~-~~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+.|-++.+|+ .++.|-|+||++| |.++.|.+.+..
T Consensus 640 ~~VRVV~Ig~~d~~~CgGTHV~nT---geIg~~kI~~~~ 675 (865)
T PRK00252 640 DEVRVVSIGDFSIELCGGTHVSNT---GDIGLFKIVSES 675 (865)
T ss_pred CeEEEEEECCceeeCCCCCccCCc---ccCeEEEEEEEe
Confidence 5688899998 6799999999999 778888887766
No 84
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.69 E-value=0.00037 Score=78.76 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.+.||.+|.||.|..... -|+ -+.|.+.--+..++|+-..+- +...+...
T Consensus 132 ~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg~-----~~~f~v~~~~~~~yL~~Spql-----~~q~li~~- 197 (428)
T TIGR00458 132 IFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT---EGG-----TELFPITYFEREAFLGQSPQL-----YKQQLMAA- 197 (428)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC---CCC-----cceeeeEecCCcEEECcCHHH-----HHHHHHhc-
Confidence 3577889999999999999999999999964221 122 234554333556777743322 22222111
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE-eCchhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF-CTVEQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if-~~~eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. . --.-||||.|++.- .+-++..+..++++
T Consensus 198 g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 198 GF-ERVYEIGPIFRAEEHNT--H-RHLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred cc-CcEEEEecccccCCCCC--c-cchheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 12 48999999999998863 1 02359999999964 43345444444444
No 85
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=97.67 E-value=9.6e-05 Score=59.52 Aligned_cols=58 Identities=29% Similarity=0.372 Sum_probs=52.2
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
-|.+|||+.+.+.. ++|+.++++.++.+.....+++.+||++.|++.++.++++++++
T Consensus 2 ~~~~~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v 59 (60)
T cd01668 2 YVFTPKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEII 59 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEE
Confidence 36789999988877 89999999998877777889999999999999999999999987
No 86
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.65 E-value=0.00084 Score=69.03 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchh-hhhhhCccccc-C---CCceEEeecCceEEEecCChHHHHHHHHhhhccc
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSGHWAHY-S---ENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~sG~~~~~-~---~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+.+++.+++.+...||+|+.|+.|.+.+ .+..-+..+.. . .+.+.+.+.- .-+|||+.-|++....+..
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~l~~N---- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARALAKL---- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHHHHhc----
Confidence 35677888999999999999999998873 34433211100 0 0122332211 3589999999887655533
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcC
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 605 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LG 605 (715)
..|+|++++|+|||.+..+. + ++.||++.++.+.+.+- .+.++....+.+++.+|
T Consensus 78 -~~~~~lFEiG~Vf~~~~~~~--~--~~~E~~~l~~~~~g~~~----df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 -KPPIRIFSIGRVYRNDEIDA--T--HLPEFHQIEGLVVDKGL----TFADLKGTLEEFAKELF 132 (218)
T ss_pred -CCCeeEEEEcCeEECCCCCC--C--cCCccEEEEEEEECCCC----CHHHHHHHHHHHHHHhc
Confidence 67999999999999986442 2 34599999988887531 13445677778888888
No 87
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.65 E-value=0.00048 Score=74.08 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccch-hhhhhhCccc-ccC-C--CceEEeecCceEEEecCChHHHHHHHHhh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-KLWQTSGHWA-HYS-E--NMFSFDVENETYALKPMNCPGHCLIFDHR 537 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~-el~~~sG~~~-~~~-~--emy~~~d~~~~l~LRPt~e~~~~~~~~~~ 537 (715)
+..-...+.+.+++.+...||+|+.+|.+++. ..+..-+..+ +.. + +.|.+. +.-+||+...|+.....+..
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N 146 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEEN 146 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhc
Confidence 44456778888999999999999999999886 3444332111 111 1 345554 35689999999887766543
Q ss_pred hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 538 ~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
. + .|+|++++|+|||.+.... . ++.||+|.++-+.... + .+..+....+.+++.+|+.
T Consensus 147 ~---~-~pirlFEiGrVfr~d~~d~--~--~~pef~ql~gl~~~~~--~--~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 147 E---K-PPIRIFSPGRVFRNDTVDA--T--HLPEFHQVEGLVIDKN--V--SFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred C---C-CCceEEEecceEEcCCCCC--c--cCChhhEEEEEEECCC--C--CHHHHHHHHHHHHHHhCCC
Confidence 2 2 7999999999999986432 1 3459999998866532 1 1444567778888888875
No 88
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00048 Score=74.62 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=94.5
Q ss_pred CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh------hhCcccccCCCceEEeecCceEEEecCC
Q psy10609 453 SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ------TSGHWAHYSENMFSFDVENETYALKPMN 526 (715)
Q Consensus 453 ~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~------~sG~~~~~~~emy~~~d~~~~l~LRPt~ 526 (715)
.+|. ...|.+......+.+.+++.|...||+++..|.++. +.|. -..|-..-..+.|.++++.+.+.||--+
T Consensus 100 lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHT 177 (335)
T COG0016 100 LPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHT 177 (335)
T ss_pred CCCc-cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCCCceeecccC
Confidence 3555 555566777888999999999999999999996654 3332 1223222234566676543357899744
Q ss_pred hHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcC
Q psy10609 527 CPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 605 (715)
Q Consensus 527 e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LG 605 (715)
.+..++...... .-|+|+...|+|||+|..-++| +.+|+|+|.-++...-. +..+..+..++++.++
T Consensus 178 s~vq~R~l~~~~----~~P~k~~~~grvyR~D~~DaTH----s~~FhQiEGlvvd~~~s----~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 178 SPVQARTLAENA----KIPIKIFSPGRVYRNDTVDATH----SPEFHQIEGLVVDKNIS----FADLKGTLEEFAKKFF 244 (335)
T ss_pred cHhhHHHHHhCC----CCCceEecccceecCCCCCccc----chheeeeEEEEEeCCcc----HHHHHHHHHHHHHHhc
Confidence 444444443222 2299999999999999776544 49999999977766422 3445677788888876
No 89
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.64 E-value=0.00043 Score=78.46 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.+.||.||.||.|.... .-|+ -+.|.+.--+..++|+-..+- ++..+...
T Consensus 135 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~---~eg~-----~~~f~~~~~~~~~~L~~Spql-----~~q~l~~~- 200 (437)
T PRK05159 135 IFKIRSEVLRAFREFLYENGFTEIFTPKIVASG---TEGG-----AELFPIDYFEKEAYLAQSPQL-----YKQMMVGA- 200 (437)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCcccccC---CCCC-----cceEeEEecCCceEecCCHHH-----HHHHHHhc-
Confidence 356788999999999999999999999995421 1122 224555434667788753332 22222211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcce-eeeEeEeeEEE-EeC-chhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTR-VRRFQQDDAHI-FCT-VEQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R-~REFtq~d~~i-f~~-~eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. . | .-||||.|++. |.. -++.-...++++
T Consensus 201 g~-~rVf~i~~~FR~E~~~t--~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv 250 (437)
T PRK05159 201 GF-ERVFEIGPVFRAEEHNT--S--RHLNEYTSIDVEMGFIDDHEDVMDLLENLL 250 (437)
T ss_pred CC-CcEEEEeceeeCCCCCC--c--ccchhhheeeeeeeecccHHHHHHHHHHHH
Confidence 12 48999999999999874 1 3 36999999996 554 345545444444
No 90
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0003 Score=79.57 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec---CceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++.++...+++.+...||.+|+||+|..+.- ++-.+ |-+-.+ |+-|+| |-+. .+|++.+.
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP-------EGARD--fLVPSRv~~G~FYAL-PQSP----QlfKQLLM 205 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP-------EGARD--FLVPSRVHPGKFYAL-PQSP----QLFKQLLM 205 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC-------ccccc--cccccccCCCceeec-CCCH----HHHHHHHH
Confidence 4567889999999999999999999999976431 11112 333222 444555 3232 23554321
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHHHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSI 603 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l~~~~~il~~ 603 (715)
- . -==|+||+.+|||+|-.-+ - |.-||||.|++. |++.++.....+. +...+++.
T Consensus 206 v-s-GfdRYyQIarCFRDEDlRa--D--RQPEFTQiD~EmSF~~~edv~~~~E~---l~~~vf~~ 261 (585)
T COG0173 206 V-A-GFDRYYQIARCFRDEDLRA--D--RQPEFTQIDLEMSFVDEEDVMELIEK---LLRYVFKE 261 (585)
T ss_pred H-h-cccceeeeeeeeccccccc--c--cCCcceeEeEEeecCCHHHHHHHHHH---HHHHHHHH
Confidence 1 1 1238999999999998643 2 889999999997 8887655554443 44555553
No 91
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.60 E-value=0.00042 Score=75.88 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhh-hhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhccc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~-~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
-.+++..|.+.+++.|.+.||.+|.||.|....-- -..|. + ..-..|.+..-+..++|+...+-. -.+... +
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~---g- 101 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGS-D-LPVKQISIDFYGVEYYLADSMILH-KQLALR---M- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccc-c-CCccccccccCCCceeeccCHHHH-HHHHHh---h-
Confidence 35678899999999999999999999999864100 00110 0 001122222235678887643332 222221 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ =|+|++|+|||+|.++. .+-...-||||.|++.-..+ ++..+..++++
T Consensus 102 --~-~rVfeI~p~FR~E~~~~-~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 102 --L-GKIFYLSPNFRLEPVDK-DTGRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred --c-CcEEEEeccccCCCCCC-CCCCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 2 48999999999999753 01126789999999965543 44444444444
No 92
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.56 E-value=0.00048 Score=80.18 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++..+.+.+++.|.+.||.||.||.|....- .|- ++ |.+.. .+.-|+|+- +.. +++..+.
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---eGa----r~--f~vp~~~~~~~~y~L~q-SpQ----lykq~l~ 202 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---EGA----RD--YLVPSRVHKGEFYALPQ-SPQ----LFKQLLM 202 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---CCC----cc--eeeeeecCCCceeecCC-CHH----HHHHHHH
Confidence 3567889999999999999999999999976321 111 11 22221 234455652 222 2333221
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
. ..+ =|+|++|+|||+|.+.+ . |--||||.|++. |..-++.....++++
T Consensus 203 v-~G~-ervfqI~~~FR~E~~~t--~--r~pEFT~le~E~af~d~~dvm~~~E~li 252 (583)
T TIGR00459 203 V-SGV-DRYYQIARCFRDEDLRA--D--RQPEFTQIDMEMSFMTQEDVMELIEKLV 252 (583)
T ss_pred h-ccc-CcEEEEcceeeCCCCCC--C--CCcccCcceeeecCCCHHHHHHHHHHHH
Confidence 1 112 48999999999999875 4 889999999996 543345545444444
No 93
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.54 E-value=0.00089 Score=73.18 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..+...+++.|.+.||.+|.||.|.... ..++. +.|.+.. .+...+|+-..+- +...+...
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~---~~~~~-----~~f~~~~~~~~~~~yL~~Spql-----~~k~ll~~ 74 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA---GGAAA-----RPFITHHNALDMDLYLRIAPEL-----YLKRLIVG 74 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC---CCccc-----eeEEeccCCCCcceeeccCHHH-----HHHHHHhc
Confidence 46778999999999999999999999997643 11111 2343321 1456677643322 22222111
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALD 595 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~ 595 (715)
.+ =|+|++|+|||+|.++. -.+-||||.|++.-..+ ++....+++++.
T Consensus 75 -g~-~~vf~i~~~FR~E~~~~----rHl~EFt~le~e~~~~~~~~~m~~~e~li~ 123 (329)
T cd00775 75 -GF-ERVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYADYNDMMDLTEDLFS 123 (329)
T ss_pred -CC-CcEEEEeccccCCCCCC----CCCCceEEEEEeeecCCHHHHHHHHHHHHH
Confidence 12 58999999999999864 26789999999865443 455555444443
No 94
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.53 E-value=0.00012 Score=58.30 Aligned_cols=60 Identities=32% Similarity=0.409 Sum_probs=52.6
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
++|++|+|+.+.++. ++|+.++++.++....+.+++|++||++++ +++.+.+++.+++++
T Consensus 1 ~~i~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~~~d--L~~~l~~~~~ie~i~ 60 (61)
T cd01667 1 IKITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVD--LSRPLEEDCELEIIT 60 (61)
T ss_pred CEEEcCCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCEEec--CCcCcCCCCEEEEEe
Confidence 468899999899998 999999999998877889999999999975 578888888888876
No 95
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=97.52 E-value=0.00021 Score=86.74 Aligned_cols=125 Identities=22% Similarity=0.373 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCce-eecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGCL-CYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
.-+-+||..|||..|++++||..+ ..|..+ .+++|+|+.....
T Consensus 555 ~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~----------------------------------- 599 (851)
T TIGR00344 555 RIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRA----------------------------------- 599 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCC-----------------------------------
Confidence 346899999999999999998654 344433 5679999964322
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
+|.+++..++..+.++|.++.|+....
T Consensus 600 -----------------------------------------------------lt~eel~~IE~~vNelI~~n~pV~~~~ 626 (851)
T TIGR00344 600 -----------------------------------------------------LTREELEKIEDLVNEQILANIPIKVIF 626 (851)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 566778889999999999999999999
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCC-cccccCCccccCcChhhHHhhcccC
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGP-LIDLCRGPHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~-~~d~~~~p~~~~t~~~eA~eLf~~~ 361 (715)
++.++|.+++. ..+..++. ...+.++.+|+ .+..|-|+|+++|+....+++.+..
T Consensus 627 ~~~eeA~~~~~-----~~~~~e~y-~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~ 682 (851)
T TIGR00344 627 MDLDEAKAKGA-----FALFGEKY-GEKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKES 682 (851)
T ss_pred eCHHHHHhcch-----hhhcCCCC-CCeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEe
Confidence 99999998764 23333332 34577899999 5788999999999999999888853
No 96
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.49 E-value=0.00054 Score=80.18 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++..+...+++.|.+.||.||.||.|....- .|. ++ |.+.. .+..|+|+ .+... ++..+.
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~---ega----~~--f~v~~~~~~~~~~~L~-qSpql----~kq~l~ 205 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP---EGA----RD--YLVPSRVHPGKFYALP-QSPQL----FKQLLM 205 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC---CCC----cc--ceecccccCCceeecC-CCHHH----HHHHHH
Confidence 3567889999999999999999999999986421 121 11 33321 24455565 22222 333221
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
. ..+ =|+|++|+|||+|.+.. . |--||||.|++. |..-++..+..++++
T Consensus 206 ~-~g~-~rvfqi~~~FR~E~~~~--~--r~~EFt~le~e~af~~~~dvm~~~E~li 255 (588)
T PRK00476 206 V-AGF-DRYYQIARCFRDEDLRA--D--RQPEFTQIDIEMSFVTQEDVMALMEGLI 255 (588)
T ss_pred h-ccc-CceEEEeceeecCCCCC--C--cCcccccceeeecCCCHHHHHHHHHHHH
Confidence 1 112 48999999999999753 3 677999999996 443345555544444
No 97
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00035 Score=73.14 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred eEEeCcc----cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHH
Q psy10609 456 SCFFQPK----GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGH 530 (715)
Q Consensus 456 ~~~~lP~----G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~ 530 (715)
...|.|. ....+.++.+-++..|...||.||+||.|...-+- --|+..|..+-..-.. ++..++|.+..|-..
T Consensus 4 ~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt--d~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~m 81 (322)
T COG2269 4 TPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT--DIHLHPFETEFLGPGGAKGKPLWLHTSPEYHM 81 (322)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCC--ccceeeeeeEEeccCccccceeeeecCcHHHH
Confidence 4556653 24567899999999999999999999999653221 1233333322221111 246788887666555
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHH
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALD 595 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~ 595 (715)
-.+.+. .--+++|+|+||||+..|++|- -||||.|-+-.+.+ .....|...+++
T Consensus 82 KrLLAa-------g~~~ifql~kvfRN~E~G~~H~----PEFTMLEWYrv~~d~~~lm~e~~~Ll~ 136 (322)
T COG2269 82 KRLLAA-------GSGPIFQLGKVFRNEEMGRLHN----PEFTMLEWYRVGCDYYRLMNEVDDLLQ 136 (322)
T ss_pred HHHHHc-------cCCcchhhhHHHhcccccccCC----CceeEeeeeccCCcHHHHHHHHHHHHH
Confidence 444432 2236899999999999876544 79999999998776 334444444443
No 98
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.44 E-value=0.0007 Score=77.03 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---------cCceEEEecCChHHHHHHH
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---------ENETYALKPMNCPGHCLIF 534 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---------~~~~l~LRPt~e~~~~~~~ 534 (715)
.+++..|.+.+++.|.+.||.+|.||.|....- -|. .++|.+.. -+..++|+-... . +
T Consensus 136 lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~---eg~-----~~~F~v~~~~~~~~~~~~~~~~yL~~Spq-l----~ 202 (453)
T TIGR00457 136 MRVRNALSQAIHRYFQENGFTWVSPPILTSNDC---EGA-----GELFRVSTDGIDFSQDFFGKEAYLTVSGQ-L----Y 202 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC---CCC-----CCceEecccccccchhccCCccccccCHH-H----H
Confidence 478889999999999999999999999976431 111 23344431 145556664322 2 2
Q ss_pred HhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 535 ~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
...+.+ .+ =|+|++|+|||+|.+.. . --+-||||.|++. |..-++.....++++
T Consensus 203 lq~l~~--g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 203 LETYAL--AL-SKVYTFGPTFRAEKSNT--S-RHLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred HHHHhh--cc-cCceEeeeccccCCCCC--C-cCcchhccceeeeecCCHHHHHHHHHHHH
Confidence 222211 22 48999999999998863 1 0235999999996 444344444444433
No 99
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.44 E-value=0.00094 Score=75.99 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---------cCceEEEecCChHHHHHH
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---------ENETYALKPMNCPGHCLI 533 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---------~~~~l~LRPt~e~~~~~~ 533 (715)
-.+++..+.+.+++.|.+.||.+|.||.|.... .-|+ -+.|.+.. -+..++|+...+-.. .+
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~---~eg~-----~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~ 202 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASD---CEGA-----GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EA 202 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccC---CCCC-----CCceEeecccccccccccCCCcccccCHHHHH-HH
Confidence 456788999999999999999999999998642 1122 23465521 145677775433222 22
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+. + .+ =|+|++++|||+|.+.. . --.-||||.|++.-..+ ++.....++++
T Consensus 203 l~----~--g~-~rVf~i~~~FR~E~~~t--~-rHl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 203 YA----M--AL-GKVYTFGPTFRAENSNT--R-RHLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred HH----h--cc-CCeEEeeeccccCCCCC--c-cccccccccceEEeccCHHHHHHHHHHHH
Confidence 21 1 22 48999999999998732 1 02369999999964333 44444444444
No 100
>PLN02850 aspartate-tRNA ligase
Probab=97.42 E-value=0.00065 Score=78.58 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..+.+.+++.|.+.||.+|.||.|..... -|+ -+.|.+.--++.++|+-...- ++..... ..
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~---egg-----a~~F~v~yf~~~~~L~qSpql-----~kq~li~-~g 290 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS---EGG-----SAVFRLDYKGQPACLAQSPQL-----HKQMAIC-GD 290 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC---ccc-----cceeeeccCCcceecCCCHHH-----HHHHHHH-hc
Confidence 467789999999999999999999999955321 121 235665444677888742222 2222211 12
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEE-EEeCc-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~-if~~~-eqa~~E~~~~l 594 (715)
+ =|+|++|+|||+|.+.. . --+-||||.|++ .|... ++....+++++
T Consensus 291 ~-~rVfeIgp~FRaE~s~t--~-RHl~EFt~Le~Em~~~~~y~evm~~~E~ll 339 (530)
T PLN02850 291 F-RRVFEIGPVFRAEDSFT--H-RHLCEFTGLDLEMEIKEHYSEVLDVVDELF 339 (530)
T ss_pred C-CceEEEecccccCCCCC--C-ccchhhccchhhhhhhcCHHHHHHHHHHHH
Confidence 2 38999999999999632 1 124699999999 57654 34444444433
No 101
>PLN02903 aminoacyl-tRNA ligase
Probab=97.40 E-value=0.00091 Score=78.49 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHH-cCcEEEecCcccchhhhhhhCcccccCCCceEEe--ecCceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRK-RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD--VENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~-~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~--d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
-.+++..+.+.+++.|.. .||.||.||.|....- .|- .+.+... ..+..|+|+- +.. +++..+.
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---eGa-----rdf~v~~~~~~g~~y~L~q-SPQ----lykQ~Lm 268 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---EGA-----RDYLVPSRVQPGTFYALPQ-SPQ----LFKQMLM 268 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---CCC-----cccEEeeecCCCcccccCC-CHH----HHHHHHH
Confidence 457788999999999986 9999999999975432 111 1222211 1244555652 222 2333222
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
.. .+ =|+||+++|||+|.+.. . |.-||||.|++. |..-++.....++++
T Consensus 269 ~~-G~-~RvFqIa~~FR~E~~~t--~--RhpEFTqLE~E~sf~d~~dvm~~~E~li 318 (652)
T PLN02903 269 VS-GF-DRYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLEDMLKLNEDLI 318 (652)
T ss_pred hc-cC-CcEEEEehhhccCCCCC--C--cccceeeeeeeecCCCHHHHHHHHHHHH
Confidence 11 12 48999999999999875 3 889999999996 544345555544444
No 102
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.39 E-value=0.0016 Score=74.89 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..+...+++.|.+.||.+|.||.|.... .|. ..+.|.+... +..++|+-..+- +...+..
T Consensus 171 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql-----~lk~l~v 237 (491)
T PRK00484 171 TFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA----GGA----AARPFITHHNALDIDLYLRIAPEL-----YLKRLIV 237 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCceeccC----CCc----cceeeeeccccCCCceEeccCHHH-----HHHHHHh
Confidence 356788999999999999999999999996431 221 1123433211 456677743332 2222211
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. .+ =|+|++|+|||+|.+.. -+.-||||.|++.-..+ ++.....++++
T Consensus 238 ~-g~-~rVfei~~~FR~E~~~~----rH~pEFt~lE~e~a~~d~~d~m~~~E~li 286 (491)
T PRK00484 238 G-GF-ERVYEIGRNFRNEGIDT----RHNPEFTMLEFYQAYADYNDMMDLTEELI 286 (491)
T ss_pred c-cC-CcEEEEecceecCCCCC----CcCCceEEEEEEEecCCHHHHHHHHHHHH
Confidence 0 12 48999999999998864 27899999999864333 44444444444
No 103
>KOG1637|consensus
Probab=97.38 E-value=8e-05 Score=82.08 Aligned_cols=141 Identities=30% Similarity=0.471 Sum_probs=90.3
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHh
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKE 292 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~ 292 (715)
++| ||||+.++..+|+||++|||.+ ++++++.+|+|+|||+..+ ++.+++.+| +++++.++
T Consensus 2 ~~~-Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~D--l~rp~e~~~-lell~f~~-------------- 62 (560)
T KOG1637|consen 2 IIV-LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWD--LDRPLEGDC-LELLKFDD-------------- 62 (560)
T ss_pred eee-cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceec--cCCcchhhH-HHHccCCC--------------
Confidence 344 9999999999999999999999 9999999999999999985 456666665 55555444
Q ss_pred cCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhcccccc
Q psy10609 293 KQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKV 372 (715)
Q Consensus 293 l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~ 372 (715)
+++.++|++++ .+++.+.+ ...|.| .+|+||-+..=-+ .+++. . +...
T Consensus 63 -----------~~~k~vfwhss--ahvlg~a~----e~~~g~----~lc~Gpp~~~gf~---yd~~~------~-i~~~- 110 (560)
T KOG1637|consen 63 -----------DEGKDVFWHSS--AHVLGEAL----EQEYGA----HLCIGPPIEEGFY---YDMLD------E-ISSN- 110 (560)
T ss_pred -----------cccceeeeehh--hhHhhHHH----HHhcCe----eEeeCCCCcCcee---hhhhc------c-cccc-
Confidence 44555666543 33443321 112333 4567774332100 00000 0 1000
Q ss_pred CCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCCh
Q psy10609 373 NTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDN 419 (715)
Q Consensus 373 ~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~ 419 (715)
+-+.+ -+||+++| |.+|.|++.+-+..+|...
T Consensus 111 d~~~~------------e~phi~~t---g~ika~k~~~nss~yw~~~ 142 (560)
T KOG1637|consen 111 DFPSI------------EAPHIRHT---GKIKAFKILKNSSAYWEGD 142 (560)
T ss_pred ccccc------------cccccccc---ceeeeeeeeccchhhhccc
Confidence 00111 13999999 6699999999999998865
No 104
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.38 E-value=0.00089 Score=79.29 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
-.+++..+.+.+++.|.+.||.+|.||.|....- .|- ++-++.... .+.-|+|+- +.. +|+..+..
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---eGA----r~~~~p~~~~~~~~y~L~q-SPQ----lykq~lm~- 221 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP---EGA----RDYLVPSRIHPKEFYALPQ-SPQ----LFKQLLMI- 221 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---CCC----cceEEeeecCCCcceecCC-CHH----HHHHHHHh-
Confidence 4577889999999999999999999999976321 111 111111111 233455552 222 24433221
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
..+ =|+|++++|||+|.+.. - |.-||||.|++. |.+.++.....++++
T Consensus 222 ~G~-~rvfqI~~~FR~E~~~t--~--r~pEFT~LE~E~af~d~~dvm~l~E~li 270 (706)
T PRK12820 222 AGF-ERYFQLARCFRDEDLRP--N--RQPEFTQLDIEASFIDEEFIFELIEELT 270 (706)
T ss_pred ccC-CcEEEEechhcCCCCCC--C--cCccccccceeeccCCHHHHHHHHHHHH
Confidence 112 48999999999999875 2 779999999995 554455555544444
No 105
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.38 E-value=0.00046 Score=74.56 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-----cCceEEEecCChHHHHHHHHhhhc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-----ENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-----~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
+++..+.+.+++.+.++||.+|.||.|+....-. ++ -+.|++.- .+...+|+-..+-..-.+ +.
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e--~~-----~~~F~~~y~~~~~~~~~~yL~~Spql~lk~l----l~ 70 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVTD--PH-----LDAFATEFLGPDGEGRPLYLQTSPEYAMKRL----LA 70 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCC--cC-----CcceeeeccCCCCCCcceeeecCHHHHHHHH----Hh
Confidence 5788999999999999999999999998753111 12 23344321 134667775333322211 11
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
+ .+ =|+|++|+|||+|.++. -..-||||.|++....
T Consensus 71 ~--g~-~rVfeigp~FRaE~~~~----rHl~EFtmLE~e~~~~ 106 (304)
T TIGR00462 71 A--GS-GPIFQICKVFRNGERGR----RHNPEFTMLEWYRPGF 106 (304)
T ss_pred c--cC-CCEEEEcCceeCCCCCC----CcccHHHhHHHHHHcC
Confidence 1 12 48999999999999863 2678999999986444
No 106
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.37 E-value=0.0018 Score=75.52 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe--ecCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD--VENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~--d~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|.+.||.||.||.|.... .|- ...-|... .-+.+++||-..+-..-.+.. .
T Consensus 253 fr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~----GGA----~a~PF~T~~n~~d~~lYLriSpEL~lKrLlv----g- 319 (585)
T PTZ00417 253 FITRTKIINYLRNFLNDRGFIEVETPTMNLVA----GGA----NARPFITHHNDLDLDLYLRIATELPLKMLIV----G- 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC----Ccc----cceeEEecccCCCcceEEeecHHHHHHHHHH----h-
Confidence 46788999999999999999999999997741 121 01112211 114578888544443333222 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|...+ ...-||||.|++.-..+ ++..+..++++
T Consensus 320 -G~-~rVfeIgp~FRnE~~~~----rHnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 320 -GI-DKVYEIGKVFRNEGIDN----THNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred -CC-CCEEEEcccccCCCCCC----CccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 12 38999999999999764 25689999999974443 44444444443
No 107
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.0019 Score=75.79 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|.+.||.||.||.|.... +|. ....|.+.. -+..++|+-..+-. ...+...
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~----~ga----~a~pF~t~~n~~~~~~yL~~SPELy-----lKrLivg 299 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVA----SGA----NAKSFVTHHNANAMDLFLRVAPELH-----LKQCIVG 299 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC----CCC----CccceEeecccCCCCEEecCChHHH-----HHHHhhc
Confidence 46788999999999999999999999995421 221 122354432 14567787544333 2222211
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. ...-||||.|++.-..+ +...+..++++
T Consensus 300 -G~-erVyeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li 347 (659)
T PTZ00385 300 -GM-ERIYEIGKVFRNEDADR----SHNPEFTSCEFYAAYHTYEDLMPMTEDIF 347 (659)
T ss_pred -cc-CCEEEEeceecCCCCCC----CccccccceeeeeecCCHHHHHHHHHHHH
Confidence 12 48999999999998864 27799999999975544 34444444433
No 108
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.24 E-value=0.0026 Score=73.94 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
-.+++..|...+++.|.+.||.+|.||.|...+
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 457889999999999999999999999997654
No 109
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.17 E-value=0.00061 Score=53.67 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=51.1
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
+++.+++|+.+++++ |+|+.|+++.++....+.++++++||++.+ +++.+.+++.++|++
T Consensus 1 ~~~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~--l~~~l~~~~~i~~i~ 60 (60)
T cd01616 1 MIIFTPDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQLVD--LSYTLQDGDTVSIVT 60 (60)
T ss_pred CEEECCCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCEECC--CCcCcCCCCEEEEeC
Confidence 467788999999998 999999999998887889999999999875 467777788888764
No 110
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.15 E-value=0.0031 Score=72.70 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..+.+.+++.|.+.||.+|.||.|... ..|- ...-|.... -+..++|+-..+-.+-.+. .+
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~----~gGa----~a~pF~t~~~~~~~~~yL~~SpELylKrli----vg 250 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA----SARPFITHHNALDLDMYLRIAPELYLKRLV----VG 250 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec----CCCC----cccceecccccCCcceeeecCHHHHHHHHH----hc
Confidence 35678899999999999999999999999652 1121 011122111 1456778754433222222 11
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.... -..-||||.|++.-..+ ++.....++++
T Consensus 251 --G~-~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 251 --GF-ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred --cC-CcEEEEehhccCCCCCC----CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 12 48999999999998753 27799999999986544 45444444444
No 111
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.14 E-value=0.0024 Score=73.45 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..|.+.+++.|.+.||.+|.||.|.... .|. .-..|.+.. -+..++||-..+-..-.+. .+
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~----gga----~a~pF~t~~~~~~~~~yLriSpELylKrli----vg 238 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP----GGA----NARPFITHHNALDMDLYLRIAPELYLKRLI----VG 238 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC----CCc----cceeEEeecccCCCceEEecCHHHHHHHHH----hC
Confidence 346778999999999999999999999997532 221 112243321 2456778864443322222 11
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. + =|+|++|+|||+|.+.. -..-||||.|++.-..+ ++..+..++++
T Consensus 239 G--~-~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~dlm~~~E~li 286 (496)
T TIGR00499 239 G--F-EKVYEIGRNFRNEGVDT----THNPEFTMIEFYQAYADYEDLMDLTENLF 286 (496)
T ss_pred C--C-CceEEEecceecCCCCC----cccchhheeehhhhcCCHHHHHHHHHHHH
Confidence 1 2 48999999999998864 26789999999864443 44444444444
No 112
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.11 E-value=0.0016 Score=75.55 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..+...+++.|.+.||.+|.||.|.... .-|+. +.|.+.--+..++|+-... +++...... .
T Consensus 213 ~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~---~egga-----~~F~v~yf~~~~~L~qSpq-----l~kq~li~~-g 278 (550)
T PTZ00401 213 FRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP---SEGGA-----NVFKLEYFNRFAYLAQSPQ-----LYKQMVLQG-D 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCccccCC---CCccc-----cccccccCCCCeecCCCHH-----HHHHHHHhc-C
Confidence 46778999999999999999999999997643 11222 2344432356677764222 233322211 1
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCc-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTV-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~-eqa~~E~~~~l 594 (715)
+ =|+|++|+|||+|.+.. . --.-||+|.|++. |+.. ++....+.+++
T Consensus 279 ~-~rVfeI~p~FRaE~s~T--~-RHl~EFt~Le~E~~~~~~y~evm~~~e~l~ 327 (550)
T PTZ00401 279 V-PRVFEVGPVFRSENSNT--H-RHLTEFVGLDVEMRINEHYYEVLDLAESLF 327 (550)
T ss_pred C-CCEEEEeCeEeCCCCCC--C-CCccchhhhhhhhHhcCCHHHHHHHHHHHH
Confidence 2 48999999999999863 1 0235999999964 6654 44444444444
No 113
>KOG2411|consensus
Probab=97.10 E-value=0.00016 Score=80.14 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec---CceEEEecCChHHHHHHHHhh
Q psy10609 463 GAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHR 537 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~ 537 (715)
-.+++.++...+++.+. ..||.+|+||.|.+ ++ |... -|.+-.+ |.-|+| |-+... |++.
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFk-----rTPgGA~-----EFvVPtr~~~g~FYaL-pQSPQQ----fKQl 241 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFK-----RTPGGAR-----EFVVPTRTPRGKFYAL-PQSPQQ----FKQL 241 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhc-----cCCCccc-----eeecccCCCCCceeec-CCCHHH----HHHH
Confidence 45777888888888774 67999999999844 33 2211 1222211 223333 333332 3322
Q ss_pred hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHH
Q psy10609 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGA 593 (715)
Q Consensus 538 ~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~ 593 (715)
+.. .-==|+||+++|||+|..-. - |.-||||.|++. |...+...+.++.+
T Consensus 242 LMv--sGidrYyQiARCfRDEdlR~--D--RQPEFTQvD~EMsF~~~~dim~liEdl 292 (628)
T KOG2411|consen 242 LMV--SGIDRYYQIARCFRDEDLRA--D--RQPEFTQVDMEMSFTDQEDIMKLIEDL 292 (628)
T ss_pred HHH--hchhhHHhHHhhhcccccCc--c--cCCcceeeeeEEeccCHHHHHHHHHHH
Confidence 211 11238999999999998642 2 999999999998 65555444444333
No 114
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.07 E-value=0.0049 Score=70.04 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCcEEE-ecCcccchhhh------hhhCcccccCCCceEEeec----------------------
Q psy10609 466 IYNTLVEFIRSEYRKRGFQEV-VSPNVYNVKLW------QTSGHWAHYSENMFSFDVE---------------------- 516 (715)
Q Consensus 466 l~~~L~~~i~~~~~~~Gy~eV-~tP~L~~~el~------~~sG~~~~~~~emy~~~d~---------------------- 516 (715)
-...+.+.+++.|...||+++ ..|.++. +.| .-..|=..-..+.|.+++.
T Consensus 222 Pl~~~~~ei~~if~~mGF~e~~~g~~ves-~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~ 300 (492)
T PLN02853 222 PLLKVRQQFRKIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGG 300 (492)
T ss_pred HHHHHHHHHHHHHHhCCCEEecCCCCeec-hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCC
Confidence 356788888999999999999 4666654 333 2223322223455666520
Q ss_pred --------------CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 517 --------------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 517 --------------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
.+..+||.-+++..+++..... ....-|+|++.+|+|||+|.--++ .+.+|+|.|.-+.+.
T Consensus 301 ~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~-~~~~~p~k~fsigrVfR~d~iDat----H~~eFhQ~EG~vvd~ 375 (492)
T PLN02853 301 YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLA-QKGFKPKRYFSIDRVFRNEAVDRT----HLAEFHQVEGLVCDR 375 (492)
T ss_pred CCccccccccccchhcccccCCCCCHHHHHHHHHhh-ccCCCCcEEEeccceecCCCCCcc----cCccceeEEEEEEeC
Confidence 1468899844444444443221 112369999999999999986543 569999999999875
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCc
Q psy10609 583 VEQIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 583 ~eqa~~E~~~~l~~~~~il~~LGl 606 (715)
.- .+..++.+..++++.+|+
T Consensus 376 ~~----t~~~L~g~l~~f~~~lg~ 395 (492)
T PLN02853 376 GL----TLGDLIGVLEDFFSRLGM 395 (492)
T ss_pred CC----CHHHHHHHHHHHHHHcCC
Confidence 42 223356788889999987
No 115
>PLN02502 lysyl-tRNA synthetase
Probab=97.07 E-value=0.0037 Score=72.69 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|...||.+|.||.|.... .|- ...-|.... -+..++|+-..+-.+-.+.. +
T Consensus 229 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----gGA----~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v----~- 295 (553)
T PLN02502 229 FRTRAKIISYIRRFLDDRGFLEVETPMLNMIA----GGA----AARPFVTHHNDLNMDLYLRIATELHLKRLVV----G- 295 (553)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeeeccC----CCc----cccceeeecccCCcceeeecCHHHHHHHHHH----h-
Confidence 46778999999999999999999999996532 221 112233221 15677887544433322222 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeCchhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~~eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. ...-||||.|++. |..-++..+..++++
T Consensus 296 -g~-~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d~~dlm~~~E~li 343 (553)
T PLN02502 296 -GF-ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYADYNDMMELTEEMV 343 (553)
T ss_pred -cc-CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCCHHHHHHHHHHHH
Confidence 12 48999999999998864 3779999999986 443244444444444
No 116
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.00 E-value=0.0046 Score=71.92 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--------c-------------------
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--------E------------------- 516 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--------~------------------- 516 (715)
.+++.++...+++.|.+.||.+|.||+|...+- .| +.+||.+.. .
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~---EG-----A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~ 297 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC---EG-----AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQ 297 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC---Cc-----cccCceeeeccccccccccccccccccCcccccccch
Confidence 578889999999999999999999999976431 11 224444321 0
Q ss_pred ---CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeC
Q psy10609 517 ---NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCT 582 (715)
Q Consensus 517 ---~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~ 582 (715)
++..+|.-.. ..+-.++. ..| =|+|++|+|||+|.+...+ -+-||+|.|++. |..
T Consensus 298 dyF~~~~~LtvS~-QL~~E~~~------~~l-~rVy~igp~FRaE~s~T~R---HL~EF~mlE~E~af~d 356 (565)
T PLN02603 298 DFFGKPAFLTVSG-QLNGETYA------TAL-SDVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFAD 356 (565)
T ss_pred hhhCcceeeccCc-hHHHHHHH------hcc-cceEEEecceeCCCCCCcc---ccccceeeeeeeecCC
Confidence 1112232211 11111111 122 4799999999999985311 346999999997 654
No 117
>PLN02900 alanyl-tRNA synthetase
Probab=96.96 E-value=0.0022 Score=78.66 Aligned_cols=126 Identities=21% Similarity=0.351 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCce-eecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGCL-CYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
.-+-.||..|+|..|++++||... ..|..+ .+.+++|+.....
T Consensus 593 ~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~----------------------------------- 637 (936)
T PLN02900 593 RIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKP----------------------------------- 637 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCC-----------------------------------
Confidence 346789999999999999998744 345433 5678999875332
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
+|.+++..++..+.++|.++.|+....
T Consensus 638 -----------------------------------------------------lt~eel~~IE~~vNe~I~~n~pV~~~~ 664 (936)
T PLN02900 638 -----------------------------------------------------MTPEELREVESLVNEWIGDALPVEAKE 664 (936)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 566778889999999999999999999
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCc--ccccCCccccCcChhhHHhhcccC
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL--IDLCRGPHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~--~d~~~~p~~~~t~~~eA~eLf~~~ 361 (715)
++.++|.++.. . +.+..+..+ ..+.++.+|++ +..|-|+|+++|+....++|....
T Consensus 665 ~~~eEA~~~~g---~-~~~f~e~y~-~~VRVV~Ig~~~d~elCGGTHV~nTgeIG~fkIls~~ 722 (936)
T PLN02900 665 MPLADAKRING---L-RAVFGEKYP-DPVRVVSVGGVYSMELCGGTHVSNTAEAEAFKLLSEE 722 (936)
T ss_pred cCHHHHhhccC---h-HhhcCCCCC-CcEEEEEECCccceeCCCCCcCCccccCceEEEEEEe
Confidence 99999888543 1 222233323 35667788985 688999999999999999988853
No 118
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=96.89 E-value=0.00049 Score=52.83 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred eEEEeeCC-eeeeccCcCCCCCccCCCcchhhhhh
Q psy10609 377 TTAYRCGP-LIDLCRGPHNSSTYWEGKADAESLQR 410 (715)
Q Consensus 377 vtlY~~g~-~~D~c~GP~vpsT~~~G~lk~f~L~r 410 (715)
|.+|++|+ ++|.|.||||++| |.++.|.+.+
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T---~~i~~~~i~~ 32 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNT---GEIGHFKILK 32 (44)
T ss_dssp EEEEEETTTEEEEESS---SBG---GGG-CEEEEE
T ss_pred CEEEEECCeeEECCCCcccCCh---hEECcEEEEE
Confidence 57999999 9999999999999 7788888873
No 119
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=96.88 E-value=0.0038 Score=78.01 Aligned_cols=112 Identities=20% Similarity=0.146 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++.++.+.+++.|.+.||.||+||.|...+ +|. .-+.|.+.. -+.+++|+-..+-..-.+.. +
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~----gGa----~a~pF~t~~~~~~~~~yLriSPELylKrLiv----g- 836 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH----GGA----NARPFVTHINAYDMDLYLRIAPELYLKRLCV----G- 836 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC----CCc----ccceeEeeecCCCccchhhcChHHHHHHHHh----c-
Confidence 46778999999999999999999999996422 121 112343322 24567777544433222221 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.... -..-||||.|++.-..+ ++..+..++++
T Consensus 837 -G~-erVFEIg~~FRnE~~~~----rHnpEFTmLE~y~a~~dy~d~m~l~E~li 884 (1094)
T PRK02983 837 -GV-ERVFELGRNFRNEGVDA----THNPEFTLLEAYQAHADYDTMRDLTRELI 884 (1094)
T ss_pred -cc-CceEEEcceecCCCCCC----CccccccchhhhhhcCCHHHHHHHHHHHH
Confidence 12 48999999999999864 26789999999975544 34444444444
No 120
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=96.82 E-value=0.0031 Score=77.22 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=65.8
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhh-ccCCCcEEEEeeCCc-ccccCCccccCcCh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKE-KVNTPTTTAYRCGPL-IDLCRGPHVRHTGK 351 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e-~~pi~~v~~y~~~~~-~d~~~~p~~~~t~~ 351 (715)
++.+++..++.++.++|.++.|.....++.++|.++.. ..+... ..+...+.+..+|+| +..|-|+|+++|+.
T Consensus 633 lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-----~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTge 707 (900)
T PRK13902 633 ITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYG-----FRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGE 707 (900)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhh
Confidence 56677888999999999999999998999999988654 233321 123456778899996 78899999999999
Q ss_pred hhHHhhccc
Q psy10609 352 IKAFKVTKY 360 (715)
Q Consensus 352 ~eA~eLf~~ 360 (715)
...+++.+.
T Consensus 708 IG~~kI~~~ 716 (900)
T PRK13902 708 IGPIKILKT 716 (900)
T ss_pred CeeEEEEEE
Confidence 999998885
No 121
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.011 Score=66.37 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+...+++.|.+.||.+|.||.|...+. .-+.++|+++--+.+.+|.- +...+..++.. +.
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~--------EGg~elF~v~yf~~~a~Ltq-S~QLyke~~~~---al- 199 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT--------EGGGELFKVDYFDKEAYLTQ-SPQLYKEALAA---AL- 199 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC--------CCCceeEEEeecCcceEEec-CHHHHHHHHHH---Hh-
Confidence 3578899999999999999999999999977542 11346787754444555542 11222222221 11
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeC
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCT 582 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~ 582 (715)
=|+|.+|++||.|.+...+ -+-||+|.|+++ |+.
T Consensus 200 ---~rVf~igP~FRAE~s~T~R---HL~EF~~ld~Emaf~~ 234 (435)
T COG0017 200 ---ERVFTIGPTFRAEKSNTRR---HLSEFWMLDPEMAFAD 234 (435)
T ss_pred ---CceEEecCceecCCCCCcc---hhhhHheecceeccCc
Confidence 3899999999999997411 378999999999 554
No 122
>PLN02221 asparaginyl-tRNA synthetase
Probab=96.74 E-value=0.013 Score=68.38 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
-.+++..+...+++.|.+.||.+|.||.|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 357888999999999999999999999997754
No 123
>PLN02532 asparagine-tRNA synthetase
Probab=96.68 E-value=0.011 Score=69.43 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 495 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e 495 (715)
-.+++..|...+++.|...||.+|.||+|...+
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 457889999999999999999999999997654
No 124
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=96.50 E-value=0.0075 Score=73.93 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=65.4
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhc-cCCCcEEEEeeCCc-ccccCCccccCcCh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEK-VNTPTTTAYRCGPL-IDLCRGPHVRHTGK 351 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~-~pi~~v~~y~~~~~-~d~~~~p~~~~t~~ 351 (715)
+|.+++..++.++.++|.++.|.....++.++|.++.. ..+.... .+...+.+..+|+| +..|-|+|+++|+.
T Consensus 637 lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~-----~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTge 711 (902)
T TIGR03683 637 ISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYG-----FRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGE 711 (902)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhc
Confidence 56667888999999999999999998999999987654 2333221 23456778889996 68899999999999
Q ss_pred hhHHhhccc
Q psy10609 352 IKAFKVTKY 360 (715)
Q Consensus 352 ~eA~eLf~~ 360 (715)
...+++.+.
T Consensus 712 IG~~kI~~~ 720 (902)
T TIGR03683 712 IGPIKILKT 720 (902)
T ss_pred CceEEEEEE
Confidence 999998885
No 125
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=96.46 E-value=0.0052 Score=49.29 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred eEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccC
Q psy10609 214 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 214 ~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
-|-+|||+.++++. ++|+.++++.++......++++.+||+..+ +++.+.+++.+++++
T Consensus 2 ~~~~~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~~vd--l~~~l~~~~~ve~v~ 60 (60)
T cd01668 2 YVFTPKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGKLVP--LSTVLKDGDIVEIIT 60 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCEECC--CCCCCCCCCEEEEEC
Confidence 35678999999997 999999999988888889999999999985 456677777777653
No 126
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=96.39 E-value=0.0014 Score=49.97 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=32.8
Q ss_pred eEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 377 TTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 377 vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+.+|.+|++ .+.|.|||+++| +.++.|.|.+.++..|.
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t---~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNT---GEIGAFKILSVSGAYWG 39 (44)
T ss_pred CEEEEECCEEEECCCCcccCCh---hhCcEEEEEEEeeeecC
Confidence 358999998 899999999999 78999999988875554
No 127
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=96.31 E-value=0.036 Score=64.83 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccccCC-CceEEeec--CceEEEecCChHHHHHHHHhhh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSE-NMFSFDVE--NETYALKPMNCPGHCLIFDHRV 538 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~~~~-emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~ 538 (715)
.....+.+.+.+++.+...||+|+.|..|.+.+. +..-+.. .+ +..++.+. .+.-+||++.-|++....+...
T Consensus 357 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~---~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~ 433 (552)
T PRK09616 357 RLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLE---PEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK 433 (552)
T ss_pred CCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCC---CCCCeEEEcCCCccchheEeccchHHHHHHHHhcc
Confidence 3344566788889999999999999999999865 5543321 11 24555442 3455899999999888776554
Q ss_pred cccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEE
Q psy10609 539 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFN 609 (715)
Q Consensus 539 ~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~ 609 (715)
.+..|+|++++|+||+.+..+.. ..+|+++..+-+.+.+ ++ +-.+....+.++..+|+++.
T Consensus 434 --~~~~~~~lFEiG~Vf~~~~~~~~----~~~e~~~l~~~~~g~~--~d--f~dlKg~ve~ll~~lgi~~~ 494 (552)
T PRK09616 434 --HREYPQKIFEIGDVVLIDESTET----GTRTERKLAAAIAHSE--AS--FTEIKSVVQALLRELGIEYE 494 (552)
T ss_pred --CCCCCeeEEEeeEEEecCCcccc----CcchhhEEEEEEECCC--CC--HHHHHHHHHHHHHHcCCeEE
Confidence 34689999999999987653321 2368888877766642 11 34456677788888888643
No 128
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.057 Score=61.20 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
..+-++++.+++.+...||-||+||.|-+- .|.. ...-|..... +-+++||=..|-.+-++ +..
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i-----~GGA---~ArPF~ThhNald~dlyLRIApELyLKRl----iVG-- 246 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPMLQPI-----PGGA---AARPFITHHNALDMDLYLRIAPELYLKRL----IVG-- 246 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCeEecccccccc-----CCCc---ccccceeeecccCCceEEeeccHHHHHHH----Hhc--
Confidence 456689999999999999999999999652 2211 1112332222 55788996555444333 322
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
-+ =|+|++|++||||--..+|- -|||+.|.+ +|-+-+..++++.+++++.+
T Consensus 247 G~-erVfEIgr~FRNEGid~tHN----PEFTmlE~Y------~AYaDy~D~m~ltE~Li~~~ 297 (502)
T COG1190 247 GF-ERVFEIGRNFRNEGIDTTHN----PEFTMLEFY------QAYADYEDLMDLTEELIKEL 297 (502)
T ss_pred Cc-hhheeeccccccCCCccccC----cchhhHHHH------HHHhHHHHHHHHHHHHHHHH
Confidence 12 38999999999997654344 789998754 56666666777777766654
No 129
>KOG1885|consensus
Probab=95.42 E-value=0.025 Score=63.04 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-c-CceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-E-NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~-~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
..++-+|+.+++..+..+||-||+||.|.. ..|.. ...-|.... + +.+++||=..+-.+-.++..-+
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~-----iaGGA---~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGl--- 293 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNM-----IAGGA---TAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGL--- 293 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhcc-----ccCcc---ccCceeecccccCcceeeeechHHHHHHHHhccH---
Confidence 356779999999999999999999999854 12211 111233222 2 5678898655544444333222
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
-|+|++|+.||+|--..+|- -|||-+|.+ +|-+-+..+.++.+++++.+
T Consensus 294 ----drVYEIGr~FRNEGIDlTHN----PEFTTcEfY------~AYady~dlm~~TE~l~s~m 342 (560)
T KOG1885|consen 294 ----DRVYEIGRQFRNEGIDLTHN----PEFTTCEFY------MAYADYEDLMDMTEELLSGM 342 (560)
T ss_pred ----HHHHHHHHHhhhcCcccccC----CCcchHHHH------HHHhhHHHHHHHHHHHHHHH
Confidence 38899999999996553343 788876643 45555666777777777654
No 130
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=95.26 E-value=0.045 Score=61.67 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=61.6
Q ss_pred ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHH
Q psy10609 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDF 596 (715)
Q Consensus 518 ~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~ 596 (715)
..+.||+.+.++....... +......|+|++++|+|||+|.. .++ ++++|+|.++-+.+..-. +.++..+
T Consensus 181 ~~~lLRTHTTpgqirtL~~-L~~~~~~PiRIFsIGRVfRrD~~~DaT----Hl~eFhQlEGLVVdedVS----f~DLKgv 251 (533)
T TIGR00470 181 TTLTLRSHMTSGWFITLSS-IIDKRKLPLKLFSIDRCFRREQREDRS----HLMTYHSASCVVVDEEVS----VDDGKAV 251 (533)
T ss_pred hCcccccCChhHHHHHHHH-HhhcCCCCeEEEeeeeEEecCCCCCCc----cCceeeeEEEEEECCCCC----HHHHHHH
Confidence 4678999777776655542 22245789999999999999964 321 679999999988876532 3335677
Q ss_pred HHHHHHHcCcE-EEEE
Q psy10609 597 LRNVYSIFGFT-FNLR 611 (715)
Q Consensus 597 ~~~il~~LGl~-~~v~ 611 (715)
...+++.||+. ++++
T Consensus 252 Le~LLr~LG~~~vRFR 267 (533)
T TIGR00470 252 AEGLLAQFGFTKFRFR 267 (533)
T ss_pred HHHHHHHhCCceEEec
Confidence 88899999974 5554
No 131
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.11 E-value=0.039 Score=66.05 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=59.1
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeec
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (715)
...+-|..|.|.++..+. |.||.|.|=.|....++..+.|+|||++.+|+++|.+.-.||+++
T Consensus 385 ~d~v~VfTP~G~v~~LP~-GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 385 PDEIYVFTPEGRIVELPA-GATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred cceEEEECCCCCEEeCCC-CCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCCCEEEEEe
Confidence 466889999999999998 999999999999999999999999999999999999999999994
No 132
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=94.66 E-value=0.048 Score=66.76 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCCc-e------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 283 EGLMKDIVKEKQPFE-R------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 283 e~lm~~aV~~l~P~~-r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
.++|..|+++.+... . ..+|.+++.+|++ .+.++|.++.|+....
T Consensus 563 tHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vNelI~~n~pV~~~~------------- 626 (851)
T TIGR00344 563 THLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED---LVNEQILANIPIKVIF------------- 626 (851)
T ss_pred HHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH---HHHHHHHhCCceEEEE-------------
Confidence 678888888877421 0 2589999999998 8999999998876653
Q ss_pred ccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 344 PHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.+++... +..... .+.|-++++|++ +..|-|+||++| |.++.|++.+..
T Consensus 627 -----~~~eeA~~~~~~~-----~~~e~y-~~~VRVV~Ig~~d~e~CgGTHV~nT---geIg~~kI~~~~ 682 (851)
T TIGR00344 627 -----MDLDEAKAKGAFA-----LFGEKY-GEKVRVVSVGDVSVELCGGTHVRNT---GEIGLFKIVKES 682 (851)
T ss_pred -----eCHHHHHhcchhh-----hcCCCC-CCeEEEEEECCeeccCCCCCccCCh---hhCeEEEEEEEe
Confidence 7889988876521 111111 357999999994 799999999999 778888887766
No 133
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=94.44 E-value=0.013 Score=68.27 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=47.4
Q ss_pred ecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC-ccccCcChhhHHhhcccC
Q psy10609 300 EMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG-PHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 300 ~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~-p~~~~t~~~eA~eLf~~~ 361 (715)
.+|.+++.++++.|+.+.++|+.+ .+ |+||+++|+|.| ||+|+|+..+||+|.+..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~ph~~~t~~~~~fkl~~~~ 101 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIENN----QI--VYKGNKVSIIEDKVSISTNLNPKYFEILNIS 101 (545)
T ss_pred cccHHHHHHHHhcCcceeeEeecC----cE--EEccCceeecCCCCCCCCCCCcceEEEEEec
Confidence 478899999999888788788733 23 359999999999 999999999999998864
No 134
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.09 E-value=0.092 Score=62.93 Aligned_cols=62 Identities=31% Similarity=0.401 Sum_probs=58.5
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
...+-|..|+|..+..+. ++||.|+|-.+....++..+.|+|||+..+|+.+|++.-.|+++
T Consensus 359 ~~~i~vfTPkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~ 420 (683)
T TIGR00691 359 NEEIYVFTPKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEII 420 (683)
T ss_pred cCceEEECCCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEE
Confidence 467889999999999998 99999999999999999999999999999999999999999999
No 135
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.98 E-value=0.32 Score=49.08 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCCC
Q psy10609 468 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELP 545 (715)
Q Consensus 468 ~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~LP 545 (715)
+.+++.+++.+...||.|+.|..|.+.+.....+. + .++..++.+. .+.=+||++--|++....+... +.+..|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~-~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~-~~~~~~ 78 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDG-G--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNL-NRKNKP 78 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHhccC-C--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHh-cCCCCC
Confidence 35677788889999999999999998865543321 1 1233444432 2334688888888877665443 345689
Q ss_pred eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hH------HHHHHHHHHHHHHHHHHcCcE
Q psy10609 546 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QI------GDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa------~~E~~~~l~~~~~il~~LGl~ 607 (715)
+|++++|+||..+.. ..+|....-+-+-+... .. ...+..+-...+.++..+|++
T Consensus 79 ~~lFEiG~vf~~~~~-------~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~ 140 (198)
T cd00769 79 LRLFEIGRVFLKDED-------GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGII 140 (198)
T ss_pred EeEEEeEeEEecCCC-------CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCe
Confidence 999999999965431 11344444333333211 00 012344556666777777753
No 136
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.96 E-value=0.16 Score=61.50 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=69.3
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCc-ccccCCccccCcChh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL-IDLCRGPHVRHTGKI 352 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~-~d~~~~p~~~~t~~~ 352 (715)
+|.+++..++.+..+.|.++.|.....++.++|.+. - . ..+..+..+ ..+.|..+|+| +.+|-|.|+++|+-+
T Consensus 607 it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-G---a-~alfGekY~-~~VRVV~ig~~SvElCGGTHv~~Tg~I 680 (879)
T COG0013 607 LTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-G---A-MALFGEKYG-DEVRVVEIGDFSVELCGGTHVSNTGDI 680 (879)
T ss_pred CCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-C---h-HhhcCCcCC-CeEEEEEECCceeeccCCcccCCccce
Confidence 677888889999999999999998889999999886 3 2 335555655 78889999998 789999999999999
Q ss_pred hHHhhcccC
Q psy10609 353 KAFKVTKYN 361 (715)
Q Consensus 353 eA~eLf~~~ 361 (715)
..|+|.+.+
T Consensus 681 G~fkI~~e~ 689 (879)
T COG0013 681 GLFKIISEE 689 (879)
T ss_pred eeEEEEEec
Confidence 999998864
No 137
>KOG1035|consensus
Probab=93.63 E-value=0.29 Score=60.64 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=94.2
Q ss_pred EEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHH
Q psy10609 457 CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFD 535 (715)
Q Consensus 457 ~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~ 535 (715)
..+.+.-..+++.+...+.++|+++|+.++.||.+... ..+ ..+..+-+.+-+. |.-+.|-..-..++++++.
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~---~~~---~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs 998 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLR---NAC---AYFSRKAVELLDHSGDVVELPYDLRLPFARYVS 998 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccc---ccc---chhccceeeeecCCCCEEEeeccccchHHHHhh
Confidence 55777888889999999999999999999999955432 221 1223455666665 5555555544444444332
Q ss_pred hhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHHHHHHHcCc---EEEEE
Q psy10609 536 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLRNVYSIFGF---TFNLR 611 (715)
Q Consensus 536 ~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~~il~~LGl---~~~v~ 611 (715)
. ...+-+|-|.+++|||.+.. . +. ||+.+++..|++.. .-.++| ++.++.+|... -| .+.+.
T Consensus 999 ~----N~~~~~Kry~i~rVyr~~~~-~-hP----~~~~ec~fDii~~t~sl~~AE---~L~vi~Ei~~~-~l~~~n~~i~ 1064 (1351)
T KOG1035|consen 999 R----NSVLSFKRYCISRVYRPAIH-N-HP----KECLECDFDIIGPTTSLTEAE---LLKVIVEITTE-ILHEGNCDIH 1064 (1351)
T ss_pred h----chHHHHHHhhhheeeccccc-C-CC----ccccceeeeEecCCCCccHHH---HHHHHHHHHHH-HhccCceeEE
Confidence 1 12356889999999999983 3 66 99999999999986 355666 45555565554 22 26677
Q ss_pred EccC
Q psy10609 612 LSTR 615 (715)
Q Consensus 612 l~~~ 615 (715)
+++.
T Consensus 1065 lnH~ 1068 (1351)
T KOG1035|consen 1065 LNHA 1068 (1351)
T ss_pred eChH
Confidence 7764
No 138
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=93.60 E-value=0.25 Score=41.65 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=47.4
Q ss_pred CcceEEEecCCc----EEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 35 GALNQVTLPDGK----IVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
|++++|++ +|+ .++... ++|+.|+.+.+.- ....++..+||++...+.+|..+.+++++
T Consensus 2 ~~mm~v~v-ng~~~~~~~~~~~-~~tv~~ll~~l~~--~~~~v~v~vNg~iv~~~~~l~~gD~Veii 64 (70)
T PRK08364 2 MLMIRVKV-IGRGIEKEIEWRK-GMKVADILRAVGF--NTESAIAKVNGKVALEDDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEEEE-eccccceEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECCCCcCcCCCCEEEEE
Confidence 45678888 666 555555 7899999998853 34568888999998899999999999998
No 139
>PRK07440 hypothetical protein; Provisional
Probab=93.56 E-value=0.32 Score=41.08 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=49.8
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
+..++|++ +|+.++... ++|+.|+.+.+. +....+++.+||++.. -+.+|..+.++|++
T Consensus 2 ~~~m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 2 SNPITLQV-NGETRTCSS-GTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred CCceEEEE-CCEEEEcCC-CCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 45688998 899888877 799999998764 4567889999999998 88889999999988
No 140
>PLN02900 alanyl-tRNA synthetase
Probab=93.54 E-value=0.16 Score=62.69 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCce-------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCC
Q psy10609 283 EGLMKDIVKEKQPFER-------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRG 343 (715)
Q Consensus 283 e~lm~~aV~~l~P~~r-------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~ 343 (715)
.++|..|+++.+.... ..+|.+++.+|++ .+-++|.++.|+....
T Consensus 601 tHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vNe~I~~n~pV~~~~------------- 664 (936)
T PLN02900 601 THLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVES---LVNEWIGDALPVEAKE------------- 664 (936)
T ss_pred HHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCCCCHHHHHHHHH---HHHHHHHhCCCeEEEE-------------
Confidence 6688888888765311 2478999999998 8999999988776553
Q ss_pred ccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCe--eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 344 PHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPL--IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 344 p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~--~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.++.... . +..... .+.|-++..|++ +..|-|+||++| |.++.|++.+.+
T Consensus 665 -----~~~eEA~~~~g~~---~-~f~e~y-~~~VRVV~Ig~~~d~elCGGTHV~nT---geIG~fkIls~~ 722 (936)
T PLN02900 665 -----MPLADAKRINGLR---A-VFGEKY-PDPVRVVSVGGVYSMELCGGTHVSNT---AEAEAFKLLSEE 722 (936)
T ss_pred -----cCHHHHhhccChH---h-hcCCCC-CCcEEEEEECCccceeCCCCCcCCcc---ccCceEEEEEEe
Confidence 7888888743210 0 001111 246888999995 789999999999 778888877766
No 141
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.51 E-value=0.13 Score=60.94 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=58.5
Q ss_pred cCcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 34 IGALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
....+-|-.|.|+++..+. |+||.|.|=.+-...++..+.|+|||++..|+.+|.+.-.||++
T Consensus 385 f~d~VyvfTPkG~vi~LP~-GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~~~Lk~Gd~VEIi 447 (701)
T COG0317 385 FPDRVYVFTPKGKVIDLPK-GATPLDFAYAVHTDIGHRCIGAKVNGRIVPLTTKLQTGDQVEII 447 (701)
T ss_pred cCceEEEECCCCCEEeCCC-CCcchhhhhhhhchhcceeeEEEECCEEeccceecCCCCEEEEE
Confidence 4456778899999999988 99999999999999999999999999999999999999999999
No 142
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=93.48 E-value=0.14 Score=63.02 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCCc-------------e------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccC
Q psy10609 282 MEGLMKDIVKEKQPFE-------------R------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCR 342 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~-------------r------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~ 342 (715)
..++|..|+++.+... + ..+|.+++.+|++ .+-++|.++.|+....
T Consensus 595 AtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vN~~I~~n~pV~~~~------------ 659 (900)
T PRK13902 595 ATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIER---LANEIVMENRPVKVEW------------ 659 (900)
T ss_pred HHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHH---HHHHHHHcCCCEEEEe------------
Confidence 3668888888876521 0 2589999999998 7889999988776553
Q ss_pred CccccCcChhhHHhhcccCcchhhccc-cccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 343 GPHVRHTGKIKAFKVTKYNPFKLRILK-EKVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 343 ~p~~~~t~~~eA~eLf~~~~~Kl~Ll~-~~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.++..- ++.. ..+.++.|-+..+|++ +..|-|+||++| |.+..|++.+..
T Consensus 660 ------~~~~eA~~~~~~-----~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nT---geIG~~kI~~~e 717 (900)
T PRK13902 660 ------MDRNEAEQKYGF-----RLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNT---GEIGPIKILKTE 717 (900)
T ss_pred ------cCHHHHHhccch-----hhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcH---hhCeeEEEEEEE
Confidence 688888776542 2221 1122467999999997 799999999999 667777776664
No 143
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.44 E-value=0.12 Score=62.11 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=58.6
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeec
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (715)
...+-|..|+|+++..+. ++||.|.|-.|....++..+.|+|||+...|+++|.+.-.||+++
T Consensus 403 ~d~V~VfTPkG~~~~Lp~-gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 403 DDRVYVFTPKGDVVDLPA-GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred CCeEEEECCCCCeEEcCC-CCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEe
Confidence 366888999999999998 999999999999999999999999999999999999999999993
No 144
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.44 E-value=0.1 Score=62.66 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=60.8
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d 278 (715)
...|-|--|.|..+.+|. |.|+.|.|-.+........++|+|||+++|| .+.+.+.+.||++|...
T Consensus 385 ~d~v~VfTP~G~v~~LP~-GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL--~~~L~~Gd~VeIiT~~~ 450 (702)
T PRK11092 385 PDEIYVFTPEGRIVELPA-GATPVDFAYAVHTDIGHACVGARVDRQPYPL--SQPLTSGQTVEIITAPG 450 (702)
T ss_pred cceEEEECCCCCEEeCCC-CCchhhhhHhhCchhhceeEEEEECCEECCC--CccCCCCCEEEEEeCCC
Confidence 467888889999999998 9999999999999999999999999999985 78999999999998765
No 145
>PLN02788 phenylalanine-tRNA synthetase
Probab=93.22 E-value=0.66 Score=52.07 Aligned_cols=130 Identities=11% Similarity=0.081 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHHHHHc---CcEEEec-Ccccch-hhhhhh----CcccccCCCceEEeecCceEEEecCChHHHHHH
Q psy10609 463 GAFIYNTLVEFIRSEYRKR---GFQEVVS-PNVYNV-KLWQTS----GHWAHYSENMFSFDVENETYALKPMNCPGHCLI 533 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~---Gy~eV~t-P~L~~~-el~~~s----G~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~ 533 (715)
...-...+.+.+.+.|... ||+.+.. |.++.. .-|..= .|-..-..+.|.+. ...+||.=+.+....+
T Consensus 66 ~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~---~~~lLRTHTSa~q~~~ 142 (402)
T PLN02788 66 PDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD---AQTVLRCHTSAHQAEL 142 (402)
T ss_pred CCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec---CCccccCCCcHHHHHH
Confidence 3344556777777878776 9999984 444442 222222 23222223455553 3578997444444455
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh--------HHHHHHHHHHHHHHHHHHc-
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ--------IGDEIVGALDFLRNVYSIF- 604 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq--------a~~E~~~~l~~~~~il~~L- 604 (715)
+.. ..| ++...|.|||++.--++ -+.+|+|.|.-.+.+.++ .+..+..+..+.+.+++.+
T Consensus 143 l~~------~~~-~~~~~g~VyRrD~iD~t----H~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lf 211 (402)
T PLN02788 143 LRA------GHT-HFLVTGDVYRRDSIDAT----HYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLF 211 (402)
T ss_pred HHh------CCC-cEEEEeeEeecCCCCcc----cCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhc
Confidence 542 124 89999999999986553 459999999988864321 1112334555666777776
Q ss_pred Cc
Q psy10609 605 GF 606 (715)
Q Consensus 605 Gl 606 (715)
|+
T Consensus 212 g~ 213 (402)
T PLN02788 212 GD 213 (402)
T ss_pred CC
Confidence 76
No 146
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.71 E-value=0.3 Score=59.31 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCc-e------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccC
Q psy10609 282 MEGLMKDIVKEKQPFE-R------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCR 342 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~-r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~ 342 (715)
..++|..|+++.+-.. . ..+|.+++.+|+. ..-++|.++.|.....
T Consensus 569 ATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~---~vNe~I~~n~~V~~~~------------ 633 (879)
T COG0013 569 ATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIER---LVNEIIRENLPVKTEE------------ 633 (879)
T ss_pred HHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHH---HHHHHHHcCCceeEEE------------
Confidence 3678888888866421 1 3689999999998 6778898887765553
Q ss_pred CccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhhc
Q psy10609 343 GPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYG 413 (715)
Q Consensus 343 ~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G 413 (715)
+++++|.+. -. ..|..... .+.|-|...|+| +.+|-|.||++| |.+..|++...+|
T Consensus 634 ------m~~~eAk~~-Ga----~alfGekY-~~~VRVV~ig~~SvElCGGTHv~~T---g~IG~fkI~~e~~ 690 (879)
T COG0013 634 ------MDLDEAKAK-GA----MALFGEKY-GDEVRVVEIGDFSVELCGGTHVSNT---GDIGLFKIISEEG 690 (879)
T ss_pred ------ccHHHHHHh-Ch----HhhcCCcC-CCeEEEEEECCceeeccCCcccCCc---cceeeEEEEEecc
Confidence 788888776 21 11222223 267889999998 899999999999 8888888887774
No 147
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.66 E-value=0.34 Score=57.70 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH------H----hcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCc
Q psy10609 186 AQMERITLWDKLKKQYDEEI------A----AKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTR 255 (715)
Q Consensus 186 ~~~~r~~~~~~l~~~~~~~~------~----~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~ 255 (715)
...+++.-..+|-+-|.+.- . +.-+..|-|--|.|..+++|. |.|+.|.|=.+.......+++|+|||+
T Consensus 352 ~~~~~~~Wlr~lle~q~~~~d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~-GatplDFAY~vHt~iG~~c~gAkVnG~ 430 (701)
T COG0317 352 AYEEKIAWLRQLLEWQEESADSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPK-GATPLDFAYAVHTDIGHRCIGAKVNGR 430 (701)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcHHHHHHHhhcccCceEEEECCCCCEEeCCC-CCcchhhhhhhhchhcceeeEEEECCE
Confidence 34566777778877776332 1 222557777789999999998 999999999999999999999999999
Q ss_pred ccccCCccccccCccccccCCCC
Q psy10609 256 ANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 256 ~~~ldl~~~i~~~~~ve~It~~d 278 (715)
+.|+ ++.+.+.+.||++|...
T Consensus 431 ivpl--~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 431 IVPL--TTKLQTGDQVEIITSKH 451 (701)
T ss_pred Eecc--ceecCCCCEEEEEeCCC
Confidence 9985 68999999999999876
No 148
>KOG0554|consensus
Probab=92.51 E-value=0.54 Score=51.90 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=69.9
Q ss_pred cccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee---cCceEEEecC----ChHHHHHH
Q psy10609 461 PKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPM----NCPGHCLI 533 (715)
Q Consensus 461 P~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d---~~~~l~LRPt----~e~~~~~~ 533 (715)
..-++++.++....++.|...||..|.||+|...+- .| .-+||.+.. ...++.=||+ +...|...
T Consensus 129 ~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC---EG-----aGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~ 200 (446)
T KOG0554|consen 129 GAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC---EG-----AGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA 200 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC---CC-----CcceEEEEecCcccccccCCceEEEEeceehHHH
Confidence 345788999999999999999999999999977541 12 236777643 2333444442 22333322
Q ss_pred HHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE-EeC
Q psy10609 534 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCT 582 (715)
Q Consensus 534 ~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i-f~~ 582 (715)
++.. =-|.|-+|++||.|.+...+ -+-||+|.|+++ |+.
T Consensus 201 ~a~~-------LsrvyTfgP~FRAEnS~tsR---HLAEFwMlEaE~AF~~ 240 (446)
T KOG0554|consen 201 MACA-------LSRVYTFGPTFRAENSHTSR---HLAEFWMLEAELAFAE 240 (446)
T ss_pred HHhh-------hcceEeeccceecccCCchh---HHhhhhhhhhHHHHHH
Confidence 2211 13788899999999987422 467899999887 554
No 149
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=92.38 E-value=0.51 Score=38.94 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=45.4
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+.... ++|+.|+..... .....++..+||.+.+ .+.+|..+.+++++
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 1 MNIQL-NGEPRELPD-GESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHhcC--CCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 36777 899888887 799999998764 3445566679998888 88999999999998
No 150
>PLN02961 alanine-tRNA ligase
Probab=92.11 E-value=0.33 Score=50.20 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccc-cCCccccCcChhhHHhh
Q psy10609 279 FPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDL-CRGPHVRHTGKIKAFKV 357 (715)
Q Consensus 279 ~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~-~~~p~~~~t~~~eA~eL 357 (715)
+..++..+.++|.++.|.....++.+++.++... .+..... +...+.+-.+|++... |-|.|+.+|+....+++
T Consensus 133 ~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~~~~~--~~~~~~~---~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I 207 (223)
T PLN02961 133 QDELEAEANELIAEGGKVSAAVLPYDEAAELCGG--SLPDYIA---KDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKV 207 (223)
T ss_pred HHHHHHHHHHHHHcCCceeEEEeCHHHHHHhcCC--cCCCcCC---CCCceEEEEECCCccCccCCcccCchhccccEEE
Confidence 4678999999999999999889999999887431 1111111 1234445567776656 99999999999888887
Q ss_pred ccc
Q psy10609 358 TKY 360 (715)
Q Consensus 358 f~~ 360 (715)
.+.
T Consensus 208 ~~~ 210 (223)
T PLN02961 208 TQI 210 (223)
T ss_pred EEE
Confidence 764
No 151
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=91.91 E-value=0.34 Score=59.81 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCc-------------e------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccC
Q psy10609 282 MEGLMKDIVKEKQPFE-------------R------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCR 342 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~-------------r------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~ 342 (715)
..++|..|+++.+... + ..+|.+++.+|++ .+-++|.++.|+....
T Consensus 599 AtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~---~vN~~I~~n~pV~~~~------------ 663 (902)
T TIGR03683 599 ATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIER---LANRIVMENRPVSVKW------------ 663 (902)
T ss_pred HHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHH---HHHHHHHhCCCeEEEE------------
Confidence 3668888888876421 0 2589999999998 7889999988776553
Q ss_pred CccccCcChhhHHhhcccCcchhhcccc-ccCCCceEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhh
Q psy10609 343 GPHVRHTGKIKAFKVTKYNPFKLRILKE-KVNTPTTTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVY 412 (715)
Q Consensus 343 ~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~-~~~~~~vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~ 412 (715)
+++++|.+.... .+... .+..+.|-+..+|++ +..|-|+||.+| |.+..|++.+..
T Consensus 664 ------~~~~eA~~~~~~-----~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nT---geIG~~kI~~~~ 721 (902)
T TIGR03683 664 ------MDRNEAEQKYGF-----RLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNT---GEIGPIKILKTE 721 (902)
T ss_pred ------eCHHHHHhcCch-----hhhccCCCCCCeEEEEEECCeeeeCCCCCCccch---hcCceEEEEEEE
Confidence 688888765442 12211 122467889999997 799999999999 667777776654
No 152
>KOG2784|consensus
Probab=91.47 E-value=0.22 Score=54.22 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhh------hCcccccCCCceEEee---------------------c---
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT------SGHWAHYSENMFSFDV---------------------E--- 516 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~------sG~~~~~~~emy~~~d---------------------~--- 516 (715)
..++..-++++|-..||.|+-|-..+.++.|.= ..|-..-..+.|-+.+ +
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~yg 293 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYG 293 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCcC
Confidence 346777888899999999998888777666531 1121111223444432 0
Q ss_pred ------------CceEEEec-CChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc
Q psy10609 517 ------------NETYALKP-MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 583 (715)
Q Consensus 517 ------------~~~l~LRP-t~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~ 583 (715)
-+..+||- |+......+|+-- ...--|-|++.+-+|||+|.--++ -+-||+|+|..+....
T Consensus 294 s~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LA--k~~f~p~K~FSIDrVFRNEtvDaT----HLAEFHQVEGviad~g 367 (483)
T KOG2784|consen 294 SIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLA--KKGFKPAKYFSIDRVFRNETVDAT----HLAEFHQVEGVIADKG 367 (483)
T ss_pred CcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHH--hCCCCcccccchhhhhhccccchH----HHHHHhhhceeeecCC
Confidence 02456886 3334444344321 112359999999999999987753 5689999999887654
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 584 EQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 584 eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
-. +-.++.+..+++..+|+.
T Consensus 368 lt----LgdLig~l~~ff~~lg~t 387 (483)
T KOG2784|consen 368 LT----LGDLIGILMEFFTKLGAT 387 (483)
T ss_pred Cc----HHHHHHHHHHHHhccCCc
Confidence 22 223578889999999874
No 153
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.85 E-value=0.49 Score=56.82 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=60.3
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d 278 (715)
...|-|--|+|..+.+|. |+|+.|+|-.+........++|+|||+.++ +++.+.+.+.|+++|...
T Consensus 359 ~~~i~vfTPkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~~v~--l~~~l~~gd~vei~t~~~ 424 (683)
T TIGR00691 359 NEEIYVFTPKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGKIVP--LDKELENGDVVEIITGKN 424 (683)
T ss_pred cCceEEECCCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCEECC--CCccCCCCCEEEEEeCCC
Confidence 568888889999999998 999999999999999999999999999887 478899999999998765
No 154
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=90.84 E-value=0.59 Score=38.62 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=44.0
Q ss_pred EEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
|++ +|+.++... ++|+.++.+.+.- ....++..|||++.+.+ .+|..+.+|+++
T Consensus 2 i~i-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 2 ITV-NGEPREVEE-GATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 455 788888877 7899999998763 34455667999999998 899999999998
No 155
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=90.84 E-value=0.63 Score=56.13 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHH---------HHH-hcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCccc
Q psy10609 188 MERITLWDKLKKQYDE---------EIA-AKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRAN 257 (715)
Q Consensus 188 ~~r~~~~~~l~~~~~~---------~~~-~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~ 257 (715)
.+|++...+|.+-|.+ .++ .+-...|-|--|+|..+.+|. |.|+.|+|-.+........++|+|||+.+
T Consensus 371 ~~~~~wLr~lle~~~~~~d~~ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~-gaT~lDfAy~iHt~iG~~~~gAkvng~~v 449 (743)
T PRK10872 371 EDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPA-GSTPLDFAYHIHSDVGHRCIGAKIGGRIV 449 (743)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCeEEEECCCCCeEEcCC-CCcHHHHHHHHhHHHHhhceEEEECCEEC
Confidence 3556666666664442 111 222567888889999999998 99999999999999999999999999988
Q ss_pred ccCCccccccCccccccCCCC
Q psy10609 258 KSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 258 ~ldl~~~i~~~~~ve~It~~d 278 (715)
+ +++.+.+.+.||++|...
T Consensus 450 ~--l~~~L~~GD~VeIits~~ 468 (743)
T PRK10872 450 P--FTYQLQMGDQIEIITQKQ 468 (743)
T ss_pred C--CCcCCCCCCEEEEEeCCC
Confidence 7 478899999999998765
No 156
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=90.59 E-value=1 Score=37.92 Aligned_cols=57 Identities=26% Similarity=0.323 Sum_probs=48.2
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
+++|.+ +|+.++... .+|..|+.+.+. +....++..|||++.. .+..+....+++++
T Consensus 2 ~m~i~~-ng~~~e~~~-~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv 62 (68)
T COG2104 2 PMTIQL-NGKEVEIAE-GTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVV 62 (68)
T ss_pred cEEEEE-CCEEEEcCC-CCcHHHHHHHhC--CCCceEEEEECCEEccchhhhhccccCCCEEEEE
Confidence 356777 699998887 599999998874 5568899999999999 99999988899988
No 157
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=90.59 E-value=1.6 Score=51.29 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhh-hhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~-~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
....+.+.+.+++.+...||+|+.|-.|.+.+-. ..-+. + .++..++.+. .+.=+||++--|++....+...
T Consensus 361 ~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~-~--~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-- 435 (551)
T TIGR00471 361 LKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI-E--DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-- 435 (551)
T ss_pred cChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhcc-C--CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc--
Confidence 3445677788899999999999999999988543 43321 1 1233444432 2334799988888877666544
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEE
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFN 609 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~ 609 (715)
.+..|+|++++|++|...... . .+.+++.+..+-+.+.. ++ +-.+....+.++..||+++.
T Consensus 436 ~~~~~~~lFEiG~Vf~~~~~~---~-~~e~~~~~l~~~~~g~~--~d--f~d~Kg~ve~ll~~l~i~~~ 496 (551)
T TIGR00471 436 HHELPQKIFEIGDVVVKDDKS---E-TRSRVVTKLAVGITHSE--AN--FNEIKSIVAALARELGIEYE 496 (551)
T ss_pred cCCCCeeEEEEEEEEEcCCcc---c-cccceeeEEEEEEECCC--CC--HHHHHHHHHHHHHHcCCceE
Confidence 457899999999999543221 1 13445555554444421 12 34456677777788887643
No 158
>PRK07440 hypothetical protein; Provisional
Probab=89.29 E-value=0.83 Score=38.60 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
..+|+|++ +|+.++++. ++|+.++.++.+ +...-||+.+|+++.+-+ ..+.+.+.+.+++++
T Consensus 2 ~~~m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 2 SNPITLQV-NGETRTCSS-GTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCceEEEE-CCEEEEcCC-CCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 34678887 778889887 999999998764 466788999999988521 123456666666664
No 159
>PRK06437 hypothetical protein; Provisional
Probab=89.22 E-value=1.3 Score=37.01 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=39.5
Q ss_pred cEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 46 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
+.+.... ++|..|+++.+.- ....++..+||.+.+.+++|..+.+++++
T Consensus 13 ~~~~i~~-~~tv~dLL~~Lgi--~~~~vaV~vNg~iv~~~~~L~dgD~Veiv 61 (67)
T PRK06437 13 KTIEIDH-ELTVNDIIKDLGL--DEEEYVVIVNGSPVLEDHNVKKEDDVLIL 61 (67)
T ss_pred eEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECCCceEcCCCCEEEEE
Confidence 4465655 7899999998753 34556667999999999999999999998
No 160
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=88.48 E-value=1.5 Score=36.06 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.8
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+.... ++|+.++.+.+... +.++.-|||++++- +.+|..+.+|+++
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 1 MDIQL-NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLV 59 (65)
T ss_pred CEEEE-CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEE
Confidence 35777 889888876 78999999887542 44677899999865 5788899999998
No 161
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=88.09 E-value=1.7 Score=35.84 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=44.3
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+... .+|+.++.+.+. +....+++-||+++.+- +.+|..+.+++++
T Consensus 1 m~i~~-Ng~~~~~~--~~tl~~Ll~~l~--~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 1 MKLFV-NGETLQTE--ATTLALLLAELD--YEGNWLATAVNGELVHKEARAQFVLHEGDRIEIL 59 (65)
T ss_pred CEEEE-CCeEEEcC--cCcHHHHHHHcC--CCCCeEEEEECCEEcCHHHcCccccCCCCEEEEE
Confidence 46777 88888873 479999998774 33466888999999987 7799999999998
No 162
>KOG0556|consensus
Probab=88.00 E-value=0.6 Score=51.65 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
++..-+...+++.+...||.+|.||-|...+- .-+.++|.++=-++.-+|.- .|. +++.... ..++
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asS--------EGGanvF~v~Yfk~~A~LAQ--SPQ---LyKQMaI-~gdf 294 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASS--------EGGANVFRVSYFKQKAYLAQ--SPQ---LYKQMAI-CGDF 294 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccC--------CCCceeEEEEeccCcchhhc--ChH---HHHHHHH-hcch
Confidence 45567888899999999999999999865331 12356777643222323321 122 2332211 1121
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI 579 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i 579 (715)
-|+|++|+|||.|.+.. +- -+-||+-.|++.
T Consensus 295 -~rVyeIGpVfRAEdSnt-hR--hltEFvGLD~EM 325 (533)
T KOG0556|consen 295 -ERVYEIGPVFRAEDSNT-HR--HLTEFVGLDLEM 325 (533)
T ss_pred -hheeeecceeeccccch-hh--hhHHhhCcchhh
Confidence 38999999999999874 32 467888777765
No 163
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=86.44 E-value=2.8 Score=34.74 Aligned_cols=56 Identities=7% Similarity=0.118 Sum_probs=43.8
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+.... ++|+.++.+.+.. ..+.++.-||+++.+ -+.+|..+.+++++
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 1 MQILF-NDQPMQCAA-GQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLF 60 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEE
Confidence 36777 899888877 7899999988653 345688899999865 34478888899988
No 164
>KOG0555|consensus
Probab=86.35 E-value=1.8 Score=47.80 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
+++.++.+.+++.+...||.||..|+|+...+-.+ ..+|+++==|++-+|--.+ .+|-.. .|
T Consensus 244 K~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGG--------sTLFkldYyGEeAyLTQSS-----QLYLEt-----cl 305 (545)
T KOG0555|consen 244 KARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGG--------STLFKLDYYGEEAYLTQSS-----QLYLET-----CL 305 (545)
T ss_pred HHHHHHHHHHHHHHHhcCceecCCCceEEEEecCc--------ceEEeecccCchhhccchh-----HHHHHH-----hh
Confidence 56678888999999999999999999998776322 2345543224443343211 112111 12
Q ss_pred C--eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEE
Q psy10609 545 P--LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI 579 (715)
Q Consensus 545 P--lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~i 579 (715)
| -.+|.++..||.|++-. +- -+-|||.+|++.
T Consensus 306 pAlgdvy~I~~SyRAEkSrT-RR--HLsEytHVEaE~ 339 (545)
T KOG0555|consen 306 PALGDVYCIQQSYRAEKSRT-RR--HLSEYTHVEAEC 339 (545)
T ss_pred hhcCceeEecHhhhhhhhhh-hh--hhhhheeeeeec
Confidence 3 35899999999999853 22 467999999998
No 165
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=86.18 E-value=2.5 Score=35.31 Aligned_cols=57 Identities=11% Similarity=0.213 Sum_probs=45.2
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
++|++ +|+.+......+|+.|+.+.+. .....+++.+||++..-+ .+|..+.++|++
T Consensus 1 m~I~v-NG~~~~~~~~~~tv~~lL~~l~--~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 1 MNLKI-NGNQIEVPESVKTVAELLTHLE--LDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIV 61 (67)
T ss_pred CEEEE-CCEEEEcCCCcccHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 35777 8888877763378999998764 456788899999988877 788889999988
No 166
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=85.25 E-value=4.7 Score=47.90 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhccc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.-.+.+.+.+++.+...||+|+.|-.|.+.+. +..-+. +.-.....++.+. .+-=+||++--|++....+... +
T Consensus 397 ~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~-~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~-~- 473 (597)
T PLN02265 397 QPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNR-EDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNK-D- 473 (597)
T ss_pred CHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcC-CccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhh-c-
Confidence 34577888899999999999999999998754 544331 1111123333332 2233688877777766555433 2
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
+.+|+|++++|.||-...... .| .+|.....+-+.+.. ++ +..+-.+...++..||++
T Consensus 474 ~~~p~klFEiG~V~~~~~~~~-~~---~~e~~~la~~~~g~~--~~--f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 474 APKPIKLFEVSDVVLLDESKD-VG---ARNSRRLAALYCGTT--SG--FEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred CCCCeeEEEeEeEEecCCccc-CC---cchhhEEEEEEECCC--CC--HhhHHHHHHHHHHHcCCc
Confidence 346999999999995432211 11 134444433333321 12 334556777788888874
No 167
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=84.63 E-value=1 Score=39.58 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 209 VPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 209 ~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
.+.+|+|++ +|+..++++ +.|+.+++... .++...||..+|+++.+-+ -...+.+.+.+|+++
T Consensus 15 ~~~~m~I~V-NG~~~~~~~-~~tl~~LL~~l--~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 15 AMVLITISI-NDQSIQVDI-SSSLAQIIAQL--SLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CCceEEEEE-CCeEEEcCC-CCcHHHHHHHc--CCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEE
Confidence 345778877 788999987 99999999876 4567788889999988532 123455666676664
No 168
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=84.53 E-value=0.43 Score=36.56 Aligned_cols=31 Identities=45% Similarity=0.716 Sum_probs=24.1
Q ss_pred EEEeeCC-cccccCCccccCcChhhHHhhccc
Q psy10609 330 TAYRCGP-LIDLCRGPHVRHTGKIKAFKVTKY 360 (715)
Q Consensus 330 ~~y~~~~-~~d~~~~p~~~~t~~~eA~eLf~~ 360 (715)
.+|++|+ +++.|-|||+++|+..++|++.+.
T Consensus 2 Rvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~ 33 (44)
T PF07973_consen 2 RVVRIGDFDVDLCGGTHVPNTGEIGHFKILKG 33 (44)
T ss_dssp EEEEETTTEEEEESS---SBGGGG-CEEEEEE
T ss_pred EEEEECCeeEECCCCcccCChhEECcEEEEEe
Confidence 5789999 899999999999999999999854
No 169
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=83.30 E-value=4.1 Score=42.78 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccC-CC-cEEEEeeCCcccc--cCCccccCcChh
Q psy10609 277 LDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVN-TP-TTTAYRCGPLIDL--CRGPHVRHTGKI 352 (715)
Q Consensus 277 ~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~p-i~-~v~~y~~~~~~d~--~~~p~~~~t~~~ 352 (715)
++...+..+..+.++++.|..-..++.+++.++..- ..+.....| .. ++.+..+++ +|. |-|.|+++|+-.
T Consensus 138 ~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~----~~~~~~~~~~~~g~iRiV~I~d-id~qpCgGtHVk~T~EI 212 (241)
T COG2872 138 DEIEEVEALANELVKENLPVIIYFIPREEAEKLPGL----VKLKNKVPPDVEGKIRIVEIGD-IDVQPCGGTHVKNTGEI 212 (241)
T ss_pred hhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcCh----hhhcccCCccccceEEEEEECC-eeccCCCCcccCCccce
Confidence 345566778888899999988788999999998762 111111212 23 566778888 444 999999998877
Q ss_pred hHHhhccc
Q psy10609 353 KAFKVTKY 360 (715)
Q Consensus 353 eA~eLf~~ 360 (715)
..+++.+.
T Consensus 213 G~Iki~k~ 220 (241)
T COG2872 213 GEIKILKT 220 (241)
T ss_pred EEEEEEEE
Confidence 66666654
No 170
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=82.76 E-value=2.5 Score=35.07 Aligned_cols=60 Identities=5% Similarity=0.075 Sum_probs=41.9
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
|+|++ +|+..++++ ++|+.++.+..+. ..+-||..+|+++.+-+ -.+.+.+.+.+++++.
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF-NDQPMQCAA-GQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 34555 788889887 8999999988654 34568889999987532 1234566666776653
No 171
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=81.68 E-value=3.5 Score=34.80 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=43.0
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
+|+|.+ +|+..+.+. ++|+.|+.++. .+...-+|+.+|+++.+-. .+..+++.+.+++++
T Consensus 2 ~m~i~~-ng~~~e~~~-~~tv~dLL~~l--~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 2 PMTIQL-NGKEVEIAE-GTTVADLLAQL--GLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred cEEEEE-CCEEEEcCC-CCcHHHHHHHh--CCCCceEEEEECCEEccchhhhhccccCCCEEEEEE
Confidence 466776 488889887 79999999885 4667889999999988621 123445555566554
No 172
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=80.61 E-value=4.1 Score=34.29 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=43.0
Q ss_pred CceeEEcCCCc----EEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 211 EEIQVTLPDGK----IVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 211 ~~I~I~lpdG~----~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
.+|+|++. |+ .+++++ ++|+.|++++.+. +...++..+|+++.+ .++.+...+.++++..
T Consensus 3 ~mm~v~vn-g~~~~~~~~~~~-~~tv~~ll~~l~~--~~~~v~v~vNg~iv~--~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 3 LMIRVKVI-GRGIEKEIEWRK-GMKVADILRAVGF--NTESAIAKVNGKVAL--EDDPVKDGDYVEVIPV 66 (70)
T ss_pred eEEEEEEe-ccccceEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECC--CCcCcCCCCEEEEEcc
Confidence 35778874 44 566676 8999999998754 346688889999874 3566677777777653
No 173
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=80.10 E-value=5.1 Score=32.90 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 44 DGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
+|+.+.... ++|+.|+.+.+... ...++..|||++.+ -+.+|..+.+++++
T Consensus 4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 788888877 78999999987643 46677889999874 33578888899988
No 174
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=78.24 E-value=4.5 Score=33.25 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=40.1
Q ss_pred eEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 214 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 214 ~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
+|++ +|+..++++ ++|+.+++...+ .+..-++..+|+++.+-. .++.+.+.+.+++++
T Consensus 2 ~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 2 NIQL-NGEPRELPD-GESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEEE-CCeEEEcCC-CCCHHHHHHhcC--CCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 4555 788889987 999999998764 344556666998776421 234566667777664
No 175
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=78.09 E-value=7.1 Score=31.82 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=42.8
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
+|.+ +|+.+.... ++|++++.+.+.+. ++ +..+||-...=+.+|..+.+|.|+
T Consensus 2 ~I~v-N~k~~~~~~-~~tl~~lr~~~k~~-~D---I~I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 2 KIKV-NEKEIETEE-NTTLFELRKESKPD-AD---IVILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EEEE-CCEEEEcCC-CcCHHHHHHhhCCC-CC---EEEEcCcccCCccccCCCCEEEEE
Confidence 5677 888888876 79999999887652 33 558899988888999998888887
No 176
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=77.20 E-value=11 Score=33.18 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=45.5
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
+.+++|++ +|+.....+ ++|+.++.+.+. +....++..+||++.+= +..|..+.+||++
T Consensus 16 ~~~m~I~V-NG~~~~~~~-~~tl~~LL~~l~--~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 16 MVLITISI-NDQSIQVDI-SSSLAQIIAQLS--LPELGCVFAINNQVVPRSEWQSTVLSSGDAISLF 78 (84)
T ss_pred CceEEEEE-CCeEEEcCC-CCcHHHHHHHcC--CCCceEEEEECCEEeCHHHcCcccCCCCCEEEEE
Confidence 44788998 999998887 789999998764 55667777999987653 3457777788887
No 177
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=76.15 E-value=18 Score=41.34 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHc--------CcEEEec--CcccchhhhhhhC----cccccCCCceEEeecCceEEEecCChHHHHHHH
Q psy10609 469 TLVEFIRSEYRKR--------GFQEVVS--PNVYNVKLWQTSG----HWAHYSENMFSFDVENETYALKPMNCPGHCLIF 534 (715)
Q Consensus 469 ~L~~~i~~~~~~~--------Gy~eV~t--P~L~~~el~~~sG----~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~ 534 (715)
.+.+.+.+.|.+. ||+.+.. |+.....-|..=+ |-..-..+.|.+. +..+||.=+.+....++
T Consensus 46 ~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~---~~~lLRTHTSa~q~~~~ 122 (460)
T TIGR00469 46 IIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN---EQHLLRAHTSAHELECF 122 (460)
T ss_pred HHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec---CCceeCCCCcHHHHHHH
Confidence 3444445555544 8988887 8443333343322 3222234455553 46789985555555566
Q ss_pred HhhhcccCCCCeE--EEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 535 DHRVRSWRELPLR--MADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 535 ~~~~~s~~~LPlr--l~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
+..... .-|++ +...|.|||++.--++ -+..|+|.|.-.+..
T Consensus 123 ~~~~~~--~~~~~~~~i~~G~VYRrD~iDat----H~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 123 QGGLDD--SDNIKSGFLISADVYRRDEIDKT----HYPVFHQADGAAIRK 166 (460)
T ss_pred Hhcccc--CCCcceeeEeecceeeCCCCccc----cCccceeeEEEEEec
Confidence 543211 25888 8888999999985543 458899999655544
No 178
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=76.11 E-value=7.2 Score=45.10 Aligned_cols=84 Identities=18% Similarity=0.343 Sum_probs=52.6
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLR 598 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~ 598 (715)
.-+||++..|++....+..+ +.+..|+|++++|+|||.+.... .- ++..+.+. ..+ ..++.++ +..+.....
T Consensus 183 ~svLRtSLlPGLL~tLs~Nl-~Rg~~piRLFEIGRVFr~d~~eE-~t--~La~llsG-s~W-~~~e~vD--FfDlKGiLE 254 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSSLL-EKRPLPIKLFSIDRCFRREQRED-AS--RLMTYHSA-SCV-IADEDVT--VDDGKAVAE 254 (529)
T ss_pred cCccccchHHHHHHHHHHHH-hCCCCCEEEEEEeeEEecCCccc-hh--heeEEEEc-ccc-ccCCCCC--HHHHHHHHH
Confidence 34799988888876665444 35689999999999998864211 01 33334333 112 2222222 445667888
Q ss_pred HHHHHcCcE-EEE
Q psy10609 599 NVYSIFGFT-FNL 610 (715)
Q Consensus 599 ~il~~LGl~-~~v 610 (715)
.+++.||++ +++
T Consensus 255 ~LL~~LGI~~i~f 267 (529)
T PRK06253 255 GLLSQFGFTKFKF 267 (529)
T ss_pred HHHHHcCCCeEEE
Confidence 888999986 444
No 179
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=75.47 E-value=5.4 Score=33.33 Aligned_cols=59 Identities=7% Similarity=0.183 Sum_probs=41.3
Q ss_pred eeEEcCCCcEEecccCC-CCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWR-TTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~-tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
|+|++ +|+.++++. + +|+.|+++..+ +...-||+.+|+++.+-+ -.+.+.+.+.+|+++
T Consensus 1 m~I~v-NG~~~~~~~-~~~tv~~lL~~l~--~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI-NGNQIEVPE-SVKTVAELLTHLE--LDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE-CCEEEEcCC-CcccHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 34555 678888886 6 68999998764 456788899999988632 123456666777665
No 180
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=74.61 E-value=6.1 Score=32.34 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=39.8
Q ss_pred eEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 214 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 214 ~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
+|++ +|+..+++. ++|+.+++...+.. +-++..+|++..+-. ....+.+.+.+++++.
T Consensus 2 ~i~v-Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 2 DIQL-NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred EEEE-CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 4555 778888887 89999999887542 346788999887521 1234566666776653
No 181
>PRK01777 hypothetical protein; Validated
Probab=73.93 E-value=9.1 Score=34.43 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=36.8
Q ss_pred EeeecCCCCHHHHHHhhhcCCcCc-----eEEEEEcCEEeccccccccCcceeee
Q psy10609 48 VPAKSWRTTPYDVAAGISKGLADS-----TIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
+.... ++|..|+++...-....+ ..+.-|||+..+++++|..+..|+++
T Consensus 21 l~vp~-GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 21 LTLQE-GATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred EEcCC-CCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEe
Confidence 33444 799999998865322211 23667999999999999999999998
No 182
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=73.63 E-value=7.9 Score=46.50 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
..-.+.+.+.+++.+...||+||.|-.|.+.+.....+... ++-..+..- .+.-+||++--|++...+.... .
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~---~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~--~ 424 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLEN---DEALELANPISEEYSVLRTSLLPGLLEALSYNK--N 424 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCC---CcceEecCCcchhHHHHHHHHHHHHHHHHHHhh--c
Confidence 45566778888999999999999999999998776654321 111122111 1233577766666655554332 3
Q ss_pred CCCC-eEEEEeccCcccCCCCC-----CCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE
Q psy10609 542 RELP-LRMADFGVLHRNELSGA-----LTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 611 (715)
Q Consensus 542 ~~LP-lrl~~~g~~FR~E~~~~-----l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~ 611 (715)
++.| ++++++|.+|-.+.... +.|+...... + ..+... ....+..+-.....+++.+|+.+.+.
T Consensus 425 r~~~~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~---~-~~w~~~--~~v~f~d~Kg~ve~ll~~lg~~~~~~ 494 (650)
T COG0072 425 RKNPDVRIFEIGDVFVKDEEAERETRHLAGLAAGLAG---E-ESWQGK--RPVDFYDAKGDLEALLEALGVEYEFE 494 (650)
T ss_pred cCCCCeeEEEeeeeEecCCcccchhHHHHHHhhcccc---c-cccccC--CCcCHHHHHHHHHHHHHHhCCceEEE
Confidence 5789 99999999999863321 1222222111 0 111111 12223345567778889999765554
No 183
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=73.57 E-value=2.5 Score=46.51 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=43.5
Q ss_pred hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEE
Q psy10609 538 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLR 611 (715)
Q Consensus 538 ~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~ 611 (715)
+....++|++++.+-+|||.|++-... |+-.++-.-+.++..+-..|. --..++.+++.||+. |+.+
T Consensus 200 i~~r~~~PlklFSIDRCFRREQ~ED~s---hLmtYhSASCVvvde~vtvD~----GKaVAEglL~qfGFe~F~Fr 267 (536)
T COG2024 200 ILKREDPPLKLFSIDRCFRREQREDAS---HLMTYHSASCVVVDEDVTVDD----GKAVAEGLLRQFGFEKFRFR 267 (536)
T ss_pred HHhccCCCceeeehhHHhhhhhhcchh---hhhhhccceEEEEcCcccccc----cHHHHHHHHHHhCccceeec
Confidence 334568999999999999999986412 444445555655554311121 124566788999997 7664
No 184
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=72.82 E-value=6.9 Score=33.08 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=37.7
Q ss_pred CCCHHHHHHhhhcCC------cCceEEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGL------ADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+.... ....++.-|||+.++.+.+|..+..|.++
T Consensus 25 ~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~ 74 (80)
T cd00754 25 GATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAII 74 (80)
T ss_pred CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEe
Confidence 689999999887543 34678889999999999999999999988
No 185
>PLN02961 alanine-tRNA ligase
Probab=72.31 E-value=6.4 Score=40.74 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=52.5
Q ss_pred HHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEEeeC
Q psy10609 304 EDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCG 383 (715)
Q Consensus 304 eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g 383 (715)
+++.+|++ .+.++|.++.|+.... +++++|.++.... ++......+.+-+-+.|
T Consensus 131 ~~~~~iE~---~~N~~I~~~~~V~~~~------------------~~~~ea~~~~~~~-----~~~~~~~~~~vRiV~I~ 184 (223)
T PLN02961 131 SKQDELEA---EANELIAEGGKVSAAV------------------LPYDEAAELCGGS-----LPDYIAKDSTPRIVKIG 184 (223)
T ss_pred hHHHHHHH---HHHHHHHcCCceeEEE------------------eCHHHHHHhcCCc-----CCCcCCCCCceEEEEEC
Confidence 34556666 6788999887776553 6888887763311 12222123567777888
Q ss_pred Ceeee-ccCcCCCCCccCCCcchhhhhhh
Q psy10609 384 PLIDL-CRGPHNSSTYWEGKADAESLQRV 411 (715)
Q Consensus 384 ~~~D~-c~GP~vpsT~~~G~lk~f~L~r~ 411 (715)
++-.. |-|-||.+| |.+..|.+.++
T Consensus 185 ~~d~~~CgGTHv~nT---~eig~i~I~~~ 210 (223)
T PLN02961 185 DSPGCPCGGTHVADV---SEITSVKVTQI 210 (223)
T ss_pred CCccCccCCcccCch---hccccEEEEEE
Confidence 87666 999999999 66777766654
No 186
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=71.72 E-value=6.9 Score=32.22 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=40.7
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
|+|++ +|+.++++ ++|+.++.+... +....+|+.+|+++.+.+ .++.+.+.+.+++++.
T Consensus 1 m~i~~-Ng~~~~~~--~~tl~~Ll~~l~--~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV-NGETLQTE--ATTLALLLAELD--YEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE-CCeEEEcC--cCcHHHHHHHcC--CCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 35555 67777774 679999998864 344678899999987632 1345666777777653
No 187
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=70.57 E-value=3.4 Score=35.54 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=37.2
Q ss_pred EEeeecCCCCHHHHHHhhhcCC---cC--ceEEEEEcCEEeccccccccCcceeee
Q psy10609 47 IVPAKSWRTTPYDVAAGISKGL---AD--STIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
.+.... ++|+.++.+.+.... +. ..++.-|||+..+.+.+|..+..|.++
T Consensus 22 ~~~~~~-~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~ 76 (82)
T PLN02799 22 TLELPA-GSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAII 76 (82)
T ss_pred EEECCC-CCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEe
Confidence 344443 688889888875332 22 445677999999999999999999998
No 188
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=70.44 E-value=10 Score=41.42 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=45.2
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEec----cccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
++|++ +|+.++... ++|+.|+...+.- ....|+..|||++.+ -+.+|..+.+||++
T Consensus 1 M~I~V-NGk~~el~e-~~TL~dLL~~L~i--~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII 60 (326)
T PRK11840 1 MRIRL-NGEPRQVPA-GLTIAALLAELGL--APKKVAVERNLEIVPRSEYGQVALEEGDELEIV 60 (326)
T ss_pred CEEEE-CCEEEecCC-CCcHHHHHHHcCC--CCCeEEEEECCEECCHHHcCccccCCCCEEEEE
Confidence 36777 899888877 7899999988653 344566669999998 66799999999999
No 189
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=69.59 E-value=11 Score=39.54 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCCc-----------ee----ecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 282 MEGLMKDIVKEKQPFE-----------RL----EMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 282 Le~lm~~aV~~l~P~~-----------r~----~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
..+++..++...+... +. +.+.+++.+++. .-.++++++.++...
T Consensus 101 a~Hlls~~~~~~~~~~~~g~~i~~d~~~iD~~~e~~~~~~~~v~~---~~ne~v~~~~~v~~~----------------- 160 (241)
T COG2872 101 ALHLLSAVLYKVYGALTTGFEIGEDYARIDFDGEDTEDEIEEVEA---LANELVKENLPVIIY----------------- 160 (241)
T ss_pred HHHHHHHHhhccccceeecceecccccccccccccchhhHHHHHH---HHHHHHHcCCeeeee-----------------
Confidence 4567777776655511 11 224555566665 445778877654332
Q ss_pred cCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeee--ccCcCCCCCccCCCcchhhhhhh
Q psy10609 347 RHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDL--CRGPHNSSTYWEGKADAESLQRV 411 (715)
Q Consensus 347 ~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~--c~GP~vpsT~~~G~lk~f~L~r~ 411 (715)
.++.++|.++..-...+...+... .+.+-+-.+|+ +|. |-|+||.+|+- +..+.+.++
T Consensus 161 -~i~~EE~~~~p~~~~~~~~~~~~~--~g~iRiV~I~d-id~qpCgGtHVk~T~E---IG~Iki~k~ 220 (241)
T COG2872 161 -FIPREEAEKLPGLVKLKNKVPPDV--EGKIRIVEIGD-IDVQPCGGTHVKNTGE---IGEIKILKT 220 (241)
T ss_pred -ecCHHHHhhCcChhhhcccCCccc--cceEEEEEECC-eeccCCCCcccCCccc---eEEEEEEEE
Confidence 378999988877433333222111 23688899999 666 99999999954 554444443
No 190
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=69.38 E-value=8.4 Score=31.87 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=40.5
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCccccc-CCccccccCccccccC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKS-RGNELCESSQYFSLVS 275 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~l-dl~~~i~~~~~ve~It 275 (715)
|+|++ +|+.+++++ ++|+.+++... .++..-||..+|+.+.+- +-...+.+.+.+++++
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~ll~~l--~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVV-NEEQVEVDE-QTTVAALLDSL--GFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVT 60 (65)
T ss_pred CEEEE-CCEEEEcCC-CCcHHHHHHHc--CCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEe
Confidence 35565 778888887 89999999885 446678888899886642 1122355556666654
No 191
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=69.10 E-value=29 Score=42.16 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
+....+.+.+.+++.+...||+|+.|-.|.+.+.+ .++..++.+. .+.=+||++--|++....+... +
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~---------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~-~ 465 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF---------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENL-K 465 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhc---------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHH-h
Confidence 44445677788899999999999999999887532 1133444432 2334788888888877665433 3
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc--------hhHHHHHHHHHHHHHHHHHHcCcEE
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV--------EQIGDEIVGALDFLRNVYSIFGFTF 608 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~--------eqa~~E~~~~l~~~~~il~~LGl~~ 608 (715)
.+..|+|+|++|.||-.... + .+|-...-+-+.+.. ......+-.+-...+.++..+|+++
T Consensus 466 r~~~~~rlFEiG~Vf~~~~~----~---~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i~~ 534 (704)
T CHL00192 466 QGNSTLEGFEIGHVFNLDSS----S---IIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNLPI 534 (704)
T ss_pred cCCCCEeEEEeeeeEcCCCc----c---ccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCCcE
Confidence 45689999999999943211 1 122223323333321 0001124456677888888999853
No 192
>PRK06437 hypothetical protein; Provisional
Probab=68.43 E-value=13 Score=30.96 Aligned_cols=60 Identities=8% Similarity=0.010 Sum_probs=39.7
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
+|+|.=+-.+.+++++ ++|+.|++++.+. +..-+|..+|++..+ ..+.+.+.+.+++++.
T Consensus 4 ~~~v~g~~~~~~~i~~-~~tv~dLL~~Lgi--~~~~vaV~vNg~iv~--~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 4 MIRVKGHINKTIEIDH-ELTVNDIIKDLGL--DEEEYVVIVNGSPVL--EDHNVKKEDDVLILEV 63 (67)
T ss_pred eEEecCCcceEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECC--CceEcCCCCEEEEEec
Confidence 4555411114567776 8999999998764 334446669999986 3566677777777653
No 193
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=67.22 E-value=6.6 Score=33.73 Aligned_cols=49 Identities=27% Similarity=0.211 Sum_probs=39.2
Q ss_pred EeeecCCCCHHHHHHhhhcCCcCceEEEEE-------cCEEeccccccccCcceeee
Q psy10609 48 VPAKSWRTTPYDVAAGISKGLADSTIIAKV-------NGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 97 (715)
+..+. ++|+.|+|..+.....+....|.| +|+...|+.+|...-.|+++
T Consensus 19 liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~ 74 (75)
T cd01666 19 VILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIV 74 (75)
T ss_pred EEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEe
Confidence 33444 899999999998766676666664 99999999999988888775
No 194
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=66.53 E-value=15 Score=30.41 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=41.1
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCE-----EeccccccccCcceeee
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGV-----LWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 97 (715)
++|++ +|+.+...+ ++|+.|+...+. +....++..+||. -|+ ..|..+.+++++
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~ll~~l~--~~~~~vav~~N~~iv~r~~~~--~~L~~gD~ieIv 59 (65)
T PRK05863 1 MIVVV-NEEQVEVDE-QTTVAALLDSLG--FPEKGIAVAVDWSVLPRSDWA--TKLRDGARLEVV 59 (65)
T ss_pred CEEEE-CCEEEEcCC-CCcHHHHHHHcC--CCCCcEEEEECCcCcChhHhh--hhcCCCCEEEEE
Confidence 46788 898888876 789999998864 4456677778886 354 358888888888
No 195
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=65.15 E-value=10 Score=31.23 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=38.6
Q ss_pred CCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 219 DGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 219 dG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
+|+..++++ ++|+.++....+ .....++..+|++..+.+ ..+.+.+.+.++++..
T Consensus 5 Ng~~~~~~~-~~tv~~ll~~l~--~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREVEE-GATLAELLEELG--LDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEcCC-CCCHHHHHHHcC--CCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 678888887 899999998875 344556777999987542 1145566666766643
No 196
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=64.56 E-value=12 Score=31.31 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=38.2
Q ss_pred CCCHHHHHHhhhcCCc----CceEEEEEcCEEecc---ccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLA----DSTIIAKVNGVLWDL---DRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+..... ...++..|||++.+. +.+|..+..|.++
T Consensus 21 ~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 21 GSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAIL 71 (77)
T ss_dssp TSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEE
T ss_pred CCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEE
Confidence 6899999999987664 266788899999999 9999999999988
No 197
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=64.54 E-value=2.5 Score=31.85 Aligned_cols=31 Identities=39% Similarity=0.739 Sum_probs=27.0
Q ss_pred EEEeeCCc-ccccCCccccCcChhhHHhhccc
Q psy10609 330 TAYRCGPL-IDLCRGPHVRHTGKIKAFKVTKY 360 (715)
Q Consensus 330 ~~y~~~~~-~d~~~~p~~~~t~~~eA~eLf~~ 360 (715)
.+|.+|++ ++.|.||++++|+...++++.+.
T Consensus 2 riv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~ 33 (44)
T smart00863 2 RVVSIGDFDVELCGGTHVPNTGEIGAFKILSV 33 (44)
T ss_pred EEEEECCEEEECCCCcccCChhhCcEEEEEEE
Confidence 35788998 89999999999999999988774
No 198
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=63.24 E-value=37 Score=41.82 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCCC
Q psy10609 468 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELP 545 (715)
Q Consensus 468 ~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~LP 545 (715)
+..++.+++.+...||+|+.|-.|.+.+-....+. +. .+...++.+. .+.=+||+.--|++....+... ..+.-|
T Consensus 494 ~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~-~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~-~~~~~~ 570 (798)
T TIGR00472 494 YLLLRKLRTLLVGLGLNEVITYSLVSSEKAEKFNF-PK-LENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQ-NRKNKD 570 (798)
T ss_pred HHHHHHHHHHHHHCCCcEEeccccCCHHHHHhhcC-CC-CCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHH-hCCCCC
Confidence 33335678888999999999999998855544332 11 1123444432 2233688887788776555433 344678
Q ss_pred eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-h-----H-HHHHHHHHHHHHHHHHHcCcE
Q psy10609 546 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-Q-----I-GDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-q-----a-~~E~~~~l~~~~~il~~LGl~ 607 (715)
+++|++|.||...... .+|....-+-+-+... . . ...+..+....+.++..+|+.
T Consensus 571 ~~lFEiG~V~~~~~~~-------~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 571 VKIFEIGKVFAKDGLG-------VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred EeEEeeecccCCCCCC-------cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 9999999999432110 1233333333332110 0 0 012455677788888888884
No 199
>KOG0188|consensus
Probab=60.48 E-value=16 Score=43.78 Aligned_cols=83 Identities=13% Similarity=0.281 Sum_probs=60.0
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCc----ccccCCccccCc
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL----IDLCRGPHVRHT 349 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~----~d~~~~p~~~~t 349 (715)
++.+++..++..+.+.|.+.-|..-..++..++.++-. .+....+..| ..+.+-..|.+ +.+|-|-|+.++
T Consensus 610 lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~g----lr~v~~E~YP-dpVRVVsvg~~~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 610 LTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPG----LRAVFDEVYP-DPVRVVSVGAGQLTSVEFCGGTHLTNT 684 (895)
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCC----cccccCCccC-CceEEEEeccccccceeecCCcccccc
Confidence 44456677788999999999888877888888888754 3444566666 44444555553 345889999999
Q ss_pred ChhhHHhhcccC
Q psy10609 350 GKIKAFKVTKYN 361 (715)
Q Consensus 350 ~~~eA~eLf~~~ 361 (715)
+-...|-|....
T Consensus 685 ~~i~~fvI~se~ 696 (895)
T KOG0188|consen 685 SHIGDFVIVSEE 696 (895)
T ss_pred cccceEEEechh
Confidence 988888887753
No 200
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=54.37 E-value=21 Score=30.77 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhhcCCcCce---EEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLADST---IIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|..|+|..|.....+.. +.++ ||+...++.+|...-.++++
T Consensus 30 GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 30 GSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred CCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEe
Confidence 7999999999987666653 4456 99999999999988777776
No 201
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=53.93 E-value=21 Score=29.25 Aligned_cols=54 Identities=7% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccC
Q psy10609 219 DGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVS 275 (715)
Q Consensus 219 dG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It 275 (715)
+|+..++++ ++|+.|+++..+.. ...++..+|+++.+-+ ..+.+.+.+.+++++
T Consensus 4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 678888887 89999999987543 4777888999886421 123456666666664
No 202
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=50.19 E-value=27 Score=43.03 Aligned_cols=133 Identities=11% Similarity=0.059 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
.....+.+.+.+++.+...||+|+.|-.|.+.+....-+. + .+..++.+. .+.=+||++--|++....+... +
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~-~---~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~-~ 559 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGL-N---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNL-N 559 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCC-C---CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHH-h
Confidence 4444566677889999999999999999998865543331 1 122333332 2333688877777776655433 3
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-h-----HHHHHHHHHHHHHHHHHHcCcE
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-Q-----IGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-q-----a~~E~~~~l~~~~~il~~LGl~ 607 (715)
.+..|+++|++|+||..... ..+|-...-+-+-+... . -...+-.+......++..||++
T Consensus 560 ~~~~~i~lFEiG~Vf~~~~~-------~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 560 RGNKDVALFEIGRVFLPDGD-------LPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLP 625 (791)
T ss_pred CCCCCEeEEeeeeeeCCCCC-------CCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 44679999999999954210 01222222222222110 0 0012444667777888888874
No 203
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=42.18 E-value=37 Score=37.24 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=41.9
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
|+|++ +|+..++++ ++|+.|++...+. +..-|+..+|+++.+-+ ..+.+.+.+.+++++.
T Consensus 1 M~I~V-NGk~~el~e-~~TL~dLL~~L~i--~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL-NGEPRQVPA-GLTIAALLAELGL--APKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEE-CCEEEecCC-CCcHHHHHHHcCC--CCCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 34555 788888887 8999999988654 44456666999988632 1345667777777754
No 204
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=41.91 E-value=23 Score=30.42 Aligned_cols=50 Identities=20% Similarity=0.089 Sum_probs=33.3
Q ss_pred EEecccCCCCHHHHHhhhcccccCceEEEEE-------cCcccccCCccccccCcccccc
Q psy10609 222 IVPAKSWRTTPYDVAAGISKGLADSTIIAKD-------WTRANKSRGNELCESSQYFSLV 274 (715)
Q Consensus 222 ~~~~~~~~tT~~dia~~i~~~~~~~ivaA~V-------n~~~~~ldl~~~i~~~~~ve~I 274 (715)
...++. |+|+.|+|..++.........|.| ||+... +++.+.+.+.++++
T Consensus 18 ~liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vg--l~~~L~d~DvVeI~ 74 (75)
T cd01666 18 PVILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVG--LDHVLEDEDVVQIV 74 (75)
T ss_pred CEEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECC--CCCEecCCCEEEEe
Confidence 344555 999999999998766666666666 444443 34566666666654
No 205
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=41.71 E-value=58 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=35.2
Q ss_pred CCCHHHHHHhhhcCCc---C--ceEEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLA---D--STIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|..|+...+...+. + +.++.-||++..+.+.+|..+..|.++
T Consensus 26 ~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 26 STTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFI 74 (80)
T ss_pred CcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEe
Confidence 4788888888865432 1 456788999999999999999999888
No 206
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=36.77 E-value=36 Score=28.57 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=27.7
Q ss_pred hhcCccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHH
Q psy10609 113 FVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLG 155 (715)
Q Consensus 113 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (715)
...|++||..+| ++.+.....-.|.++|..|+
T Consensus 6 ~~~p~Lwd~~~~-----------~y~~~~~r~~aw~~Ia~~l~ 37 (85)
T PF10545_consen 6 KKHPCLWDPSHP-----------DYKNRQLREEAWQEIARELG 37 (85)
T ss_pred hhCHHhhCCCCc-----------ccCCHHHHHHHHHHHHHHHc
Confidence 456999999999 99999998889998887775
No 207
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=33.78 E-value=22 Score=42.14 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=29.2
Q ss_pred CCccccc-cceeccCcccccCcEEEcCCCceecccccccccCC
Q psy10609 667 KRPHQCA-TIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDIR 708 (715)
Q Consensus 667 gr~~q~~-TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~ 708 (715)
+|..++| +.||.-.++++|+++|.|++|+++.+ .|..||
T Consensus 406 ~rgIEvGhiF~LG~kYS~~~~~~~~d~~g~~~~~---~mgcyG 445 (568)
T TIGR00409 406 ARGIEVGHIFQLGTKYSEALKATFLDENGKNQFM---TMGCYG 445 (568)
T ss_pred cceEEEEEeccchhhhHHhcCCEEECCCCCEEEE---EEeCCc
Confidence 3555566 44466678999999999999999877 665554
No 208
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=33.77 E-value=53 Score=30.12 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=37.6
Q ss_pred CcchhhhhhhhhccccchhhhhhccCccccccccCcceEEEecCCcEEeeec
Q psy10609 1 MSETEIVAKVEELKLDGEKQIESYSDVKVPKKCIGALNQVTLPDGKIVPAKS 52 (715)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (715)
|+|+|.-..++++--.=+..++.+.+.-++....+..++|+++||+.+..++
T Consensus 1 m~e~ef~~~ad~~l~~ie~~ld~~~~~d~D~e~~~gVLti~f~~~~~~VINk 52 (105)
T PRK00446 1 MNDSEFHQLADALWQAIEEQLDDDGDADIDCERNGGVLTLTFENGSKIIINR 52 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCEEEEEECCCCEEEEeC
Confidence 7777777766666555555565444556777778999999999998776665
No 209
>PRK01777 hypothetical protein; Validated
Probab=32.75 E-value=1.9e+02 Score=25.98 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=36.4
Q ss_pred EEecccCCCCHHHHHhhhcccccCc-e----EEEEEcCcccccCCccccccCccccccCCCC
Q psy10609 222 IVPAKSWRTTPYDVAAGISKGLADS-T----IIAKDWTRANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 222 ~~~~~~~~tT~~dia~~i~~~~~~~-i----vaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d 278 (715)
..+++. |+|+.|+++..+.....+ + ...-|||+... +++.+.+.+.++++..-.
T Consensus 20 ~l~vp~-GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~--~d~~L~dGDRVeIyrPL~ 78 (95)
T PRK01777 20 RLTLQE-GATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAK--LTDVLRDGDRVEIYRPLL 78 (95)
T ss_pred EEEcCC-CCcHHHHHHHcCCCccCcccccccceEEEeCeECC--CCCcCCCCCEEEEecCCC
Confidence 345666 999999999876433322 2 24457998885 467777777888776543
No 210
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=30.59 E-value=91 Score=26.11 Aligned_cols=46 Identities=2% Similarity=-0.062 Sum_probs=34.7
Q ss_pred CCCHHHHHhhhccccc------CceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 229 RTTPYDVAAGISKGLA------DSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 229 ~tT~~dia~~i~~~~~------~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
++|+.|+.+.+...++ ...++..||++..+ .++.+.+.+.+.++..
T Consensus 25 ~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~--~~~~l~~gD~v~i~pp 76 (80)
T cd00754 25 GATVGELLDALEARYPGLLEELLARVRIAVNGEYVR--LDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC--CCcccCCCCEEEEeCC
Confidence 7899999998876543 46788889999876 3566777777777654
No 211
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=30.31 E-value=89 Score=26.67 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=34.1
Q ss_pred EEecccCCCCHHHHHhhhcccc---cC--ceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 222 IVPAKSWRTTPYDVAAGISKGL---AD--STIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 222 ~~~~~~~~tT~~dia~~i~~~~---~~--~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
..+++. ++|+.++.+.+...+ .. ..++.-||++..+ .++.+.+.+.+.++..
T Consensus 22 ~~~~~~-~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~--~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 22 TLELPA-GSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT--ESAALKDGDELAIIPP 78 (82)
T ss_pred EEECCC-CCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC--CCcCcCCCCEEEEeCC
Confidence 344554 889999988875443 22 3456678998864 4566777777777654
No 212
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=27.84 E-value=64 Score=27.73 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=32.0
Q ss_pred cccCCCCHHHHHhhhcccccCceE---EEEEcCcccccCCccccccCccccccC
Q psy10609 225 AKSWRTTPYDVAAGISKGLADSTI---IAKDWTRANKSRGNELCESSQYFSLVS 275 (715)
Q Consensus 225 ~~~~~tT~~dia~~i~~~~~~~iv---aA~Vn~~~~~ldl~~~i~~~~~ve~It 275 (715)
++. |+|+.|.|..++.......+ .++ |++...+ ++.+.+.+.+++++
T Consensus 27 l~~-GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~--~~~L~dgDvV~Ii~ 76 (76)
T cd01669 27 LPK-GSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGE--DYELKHRDVIKIVS 76 (76)
T ss_pred ECC-CCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCC--CcEecCCCEEEEeC
Confidence 444 89999999998876766533 345 7666653 56666666666654
No 213
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=26.32 E-value=1.1e+02 Score=26.51 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=33.6
Q ss_pred CCCHHHHHHhhhcCCc-------------CceEEEEEcCEEecccc--ccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLA-------------DSTIIAKVNGVLWDLDR--PLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 97 (715)
++|..|+.+.+...+. .+.+...|||+..+-+. ||..+..|.++
T Consensus 24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEe
Confidence 5899999988864432 13477789999877676 99998888887
No 214
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=25.72 E-value=1.3e+02 Score=25.48 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=22.0
Q ss_pred ceEEEecCCc--EEeeecCCCCHHHHHHhhhc
Q psy10609 37 LNQVTLPDGK--IVPAKSWRTTPYDVAAGISK 66 (715)
Q Consensus 37 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 66 (715)
.+.|.||||+ .+.+.+ +.|+.|+...+-+
T Consensus 2 ~~~v~LP~~q~t~V~vrp-g~ti~d~L~~~~~ 32 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRP-GMTIRDALSKACK 32 (71)
T ss_dssp EEEEEETTTEEEEEEE-T-TSBHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEEcC-CCCHHHHHHHHHH
Confidence 4678999998 355555 8999999888754
No 215
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=23.70 E-value=1.2e+02 Score=27.82 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=36.5
Q ss_pred CcchhhhhhhhhccccchhhhhhccC-ccccccccCcceEEEecCCcEEeeec
Q psy10609 1 MSETEIVAKVEELKLDGEKQIESYSD-VKVPKKCIGALNQVTLPDGKIVPAKS 52 (715)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (715)
|+++|.-..++++-..=+.+++...+ .-++....+..++|++++|+.+..++
T Consensus 1 M~d~~f~~~ad~~l~~i~~~ld~~~~~~d~D~e~~~gVLti~f~~~~~~VINk 53 (105)
T cd00503 1 MNESEFHRLADDLLLKIEDTLEEQDDDADIDVETQGGVLTLTFGNGSTIVINR 53 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCcccCEeeeccCCEEEEEECCCCEEEEeC
Confidence 77777776666655545555554443 35666668899999999988877776
No 216
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=23.65 E-value=1.7e+02 Score=25.07 Aligned_cols=44 Identities=32% Similarity=0.103 Sum_probs=35.7
Q ss_pred CCCHHHHHHhhhcCCcCceEEEEEcC-EEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLADSTIIAKVNG-VLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 97 (715)
++|..|+|..|.....+.++-|.|-| +...++..|..+--++++
T Consensus 31 g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~ 75 (76)
T cd04938 31 GTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFK 75 (76)
T ss_pred CCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEE
Confidence 79999999999988888888888887 777788888766555543
No 217
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=23.11 E-value=69 Score=27.72 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhccccc
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLA 244 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~ 244 (715)
.++|+|++ ||+.+++++ |.|+.+.+...+...+
T Consensus 1 ~~~v~i~i-dG~~v~~~~-G~til~al~~~gi~ip 33 (82)
T PF13510_consen 1 DKMVTITI-DGKPVEVPP-GETILEALLAAGIDIP 33 (82)
T ss_dssp -EEEEEEE-TTEEEEEEE-T-BHHHHHHHTT--B-
T ss_pred CCEEEEEE-CCEEEEEcC-CCHHHHHHHHCCCeEE
No 218
>smart00595 MADF subfamily of SANT domain.
Probab=23.01 E-value=74 Score=27.38 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=27.3
Q ss_pred hhcCccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHH
Q psy10609 113 FVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156 (715)
Q Consensus 113 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (715)
...|.+||-++| .+.+.....-.|..+|--|+.
T Consensus 7 ~~~p~Lwd~~~~-----------~y~~~~~r~~aW~~Ia~~l~~ 39 (89)
T smart00595 7 RERPCLWDRRHP-----------DYRNKEEKRKAWEEIAEELGL 39 (89)
T ss_pred HhCccccCCCCh-----------hhcChHHHHHHHHHHHHHHCc
Confidence 456999999999 898888888888888777654
No 219
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=22.50 E-value=2.2e+02 Score=24.37 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCCHHHHHHhhhcCC-------cCceEEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGL-------ADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|+.++.+.+.... ....+..-||+.+.+++.+|..+..|.++
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence 478888877775332 22345677899999999999999998887
No 220
>smart00455 RBD Raf-like Ras-binding domain.
Probab=21.72 E-value=2.1e+02 Score=24.14 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=31.2
Q ss_pred eEEEecCCcE--EeeecCCCCHHHHHHhhhc--CCcCceEEEEE--cCEEecccccc
Q psy10609 38 NQVTLPDGKI--VPAKSWRTTPYDVAAGISK--GLADSTIIAKV--NGVLWDLDRPL 88 (715)
Q Consensus 38 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~ 88 (715)
..|.||||+. +.++. +.|+.|+.+.+-+ ++....+.... .+...|++.+.
T Consensus 2 ~~v~LP~~~~~~V~vrp-g~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~~~ 57 (70)
T smart00455 2 CKVHLPDNQRTVVKVRP-GKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQPI 57 (70)
T ss_pred eEEECCCCCEEEEEECC-CCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCCcc
Confidence 4688999984 44555 8999999988753 34334444444 22455665443
No 221
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=21.19 E-value=2.8e+02 Score=28.78 Aligned_cols=83 Identities=7% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccC-------------ceEEEEEcCccccc-CCccccccCccccccC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLAD-------------STIIAKDWTRANKS-RGNELCESSQYFSLVS 275 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~-------------~ivaA~Vn~~~~~l-dl~~~i~~~~~ve~It 275 (715)
|.+|+|++ ||+.+++++ |.|+++.+...+...+. ....++|+|..... -..+++...-.|+.-+
T Consensus 1 m~~v~i~i-dg~~~~~~~-g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~ 78 (234)
T PRK07569 1 MSVKTLTI-DDQLVSARE-GETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNT 78 (234)
T ss_pred CceEEEEE-CCEEEEeCC-CCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECC
Q ss_pred CCChHHHHHHHHHHHHhcCC
Q psy10609 276 TLDFPVMEGLMKDIVKEKQP 295 (715)
Q Consensus 276 ~~d~~gLe~lm~~aV~~l~P 295 (715)
. .+......+.+.+..++|
T Consensus 79 ~-~~~~~rk~~l~~ll~~h~ 97 (234)
T PRK07569 79 P-RLQEYRRMIVELLFAEGN 97 (234)
T ss_pred H-HHHHHHHHHHHHHHHhcc
Done!