Query psy10609
Match_columns 715
No_of_seqs 431 out of 3326
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:44:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf6_A THRRS, threonyl-tRNA sy 100.0 7.9E-97 3E-101 859.3 39.5 502 38-700 2-508 (642)
2 1nyr_A Threonyl-tRNA synthetas 100.0 3.8E-92 1.3E-96 822.1 39.0 503 36-700 2-514 (645)
3 3uh0_A Threonyl-tRNA synthetas 100.0 5.9E-59 2E-63 521.5 23.8 271 431-701 31-315 (460)
4 1evl_A Threonyl-tRNA synthetas 100.0 4.6E-51 1.6E-55 451.1 24.5 266 435-700 1-267 (401)
5 3a32_A Probable threonyl-tRNA 100.0 1.7E-44 5.8E-49 406.5 14.4 271 424-699 11-306 (471)
6 3lss_A Seryl-tRNA synthetase; 100.0 4.1E-44 1.4E-48 399.1 7.8 251 420-707 160-430 (484)
7 3ial_A Prolyl-tRNA synthetase; 100.0 1.7E-42 5.9E-47 390.9 17.1 245 419-708 21-274 (518)
8 3vbb_A Seryl-tRNA synthetase, 100.0 1.3E-43 4.6E-48 397.1 7.8 248 421-707 155-429 (522)
9 1wle_A Seryl-tRNA synthetase; 100.0 4.3E-43 1.5E-47 394.0 8.2 251 420-707 170-436 (501)
10 2dq3_A Seryl-tRNA synthetase; 100.0 2.3E-43 7.9E-48 391.3 5.5 250 420-707 123-385 (425)
11 2dq0_A Seryl-tRNA synthetase; 100.0 7.2E-43 2.4E-47 389.7 7.8 239 432-707 157-406 (455)
12 3err_A Fusion protein of micro 100.0 8.2E-43 2.8E-47 395.3 7.3 251 418-707 225-489 (536)
13 1ses_A Seryl-tRNA synthetase; 100.0 7.9E-43 2.7E-47 386.4 5.9 236 432-707 131-380 (421)
14 3qne_A Seryl-tRNA synthetase, 100.0 2.8E-42 9.7E-47 383.9 7.9 239 431-707 148-404 (485)
15 4hvc_A Bifunctional glutamate/ 100.0 1E-40 3.5E-45 377.3 19.1 243 413-699 22-275 (519)
16 1nj1_A PROR, proline-tRNA synt 100.0 2.5E-39 8.6E-44 366.3 15.3 242 423-699 31-281 (501)
17 1hc7_A Prolyl-tRNA synthetase; 100.0 1.5E-38 5E-43 358.1 17.3 231 434-699 15-254 (477)
18 1nj8_A Proline-tRNA synthetase 100.0 4.5E-38 1.5E-42 352.8 16.8 233 434-699 8-249 (459)
19 1tke_A Threonyl-tRNA synthetas 100.0 1.3E-37 4.6E-42 317.8 12.9 219 38-417 2-224 (224)
20 2j3l_A Prolyl-tRNA synthetase; 100.0 1.1E-36 3.7E-41 350.7 20.6 182 429-614 15-198 (572)
21 2i4l_A Proline-tRNA ligase; al 100.0 3.2E-37 1.1E-41 346.1 11.7 284 401-699 13-331 (458)
22 1ati_A Glycyl-tRNA synthetase; 100.0 1.4E-33 4.9E-38 319.5 8.0 249 436-697 7-352 (505)
23 4e51_A Histidine--tRNA ligase; 100.0 8E-32 2.7E-36 302.9 17.8 233 452-700 34-329 (467)
24 2cja_A Seryl-tRNA synthetase; 100.0 5.8E-32 2E-36 304.9 10.2 226 438-690 206-472 (522)
25 1qe0_A Histidyl-tRNA synthetas 100.0 1.9E-30 6.5E-35 287.6 12.6 232 452-699 4-302 (420)
26 3mf2_A BLL0957 protein; aminoa 100.0 2.1E-30 7.1E-35 275.8 8.6 217 451-704 50-298 (346)
27 2zt5_A Glycyl-tRNA synthetase; 100.0 5.4E-30 1.8E-34 299.0 10.8 263 437-701 70-520 (693)
28 1g5h_A Mitochondrial DNA polym 99.9 3.4E-29 1.2E-33 279.9 0.4 251 411-701 9-293 (454)
29 1htt_A Histidyl-tRNA synthetas 99.9 1.4E-27 4.8E-32 264.9 13.2 156 452-615 6-167 (423)
30 1h4v_B Histidyl-tRNA synthetas 99.9 9.8E-27 3.3E-31 258.0 18.9 157 452-615 5-166 (421)
31 1wu7_A Histidyl-tRNA synthetas 99.9 4.1E-28 1.4E-32 270.4 7.0 218 452-686 8-268 (434)
32 3ikl_A DNA polymerase subunit 99.9 3.4E-27 1.2E-31 261.6 6.6 143 455-612 95-245 (459)
33 1z7m_A ATP phosphoribosyltrans 99.9 5.4E-26 1.8E-30 246.1 13.9 155 452-616 24-183 (344)
34 1tke_A Threonyl-tRNA synthetas 99.9 1.9E-26 6.5E-31 235.3 9.3 179 212-417 1-207 (224)
35 3rac_A Histidine-tRNA ligase; 99.9 2.3E-25 7.8E-30 243.5 12.9 165 446-616 19-190 (373)
36 3od1_A ATP phosphoribosyltrans 99.9 3.1E-25 1.1E-29 244.6 13.6 155 452-616 12-169 (400)
37 3lc0_A Histidyl-tRNA synthetas 99.9 2.3E-24 7.7E-29 241.4 15.5 155 452-616 31-191 (456)
38 4g85_A Histidine-tRNA ligase, 99.9 4.6E-24 1.6E-28 242.8 15.1 197 407-616 20-226 (517)
39 3net_A Histidyl-tRNA synthetas 99.9 1.7E-23 5.7E-28 235.2 17.2 154 452-616 14-188 (465)
40 4g84_A Histidine--tRNA ligase, 99.9 1.2E-22 4.1E-27 227.6 15.7 166 436-615 3-172 (464)
41 1nyr_A Threonyl-tRNA synthetas 99.9 3.1E-23 1E-27 241.8 8.4 181 211-418 2-207 (645)
42 1qf6_A THRRS, threonyl-tRNA sy 99.9 7.8E-23 2.7E-27 237.9 8.9 179 212-417 1-207 (642)
43 1usy_A ATP phosphoribosyltrans 99.8 5.6E-20 1.9E-24 193.1 9.4 147 469-641 5-158 (275)
44 1v4p_A Alanyl-tRNA synthetase; 99.7 2.7E-17 9.1E-22 158.5 9.3 131 141-413 2-137 (157)
45 3dsq_A Pyrrolysyl-tRNA synthet 99.7 8.9E-16 3.1E-20 162.0 15.9 139 465-612 71-211 (288)
46 1wwt_A Threonyl-tRNA synthetas 99.5 2.9E-15 9.9E-20 130.5 1.0 78 36-151 10-87 (88)
47 3qtc_A Pyrrolysyl-tRNA synthet 99.3 7.5E-12 2.6E-16 132.1 15.1 133 467-611 79-213 (290)
48 2ztg_A Alanyl-tRNA synthetase; 99.2 4.5E-11 1.5E-15 139.1 10.3 40 143-182 595-636 (739)
49 3kew_A DHHA1 domain protein; s 99.0 1.9E-10 6.5E-15 118.2 4.3 39 142-181 92-131 (241)
50 1nnh_A Asparaginyl-tRNA synthe 98.9 1.1E-08 3.9E-13 108.0 14.1 112 461-583 12-125 (294)
51 2zze_A Alanyl-tRNA synthetase; 98.9 2.5E-09 8.6E-14 124.6 7.9 128 143-413 608-738 (752)
52 2e1b_A PH0108, 216AA long hypo 98.8 7.7E-09 2.6E-13 104.6 9.5 42 140-182 91-136 (216)
53 2kmm_A Guanosine-3',5'-BIS(dip 98.8 9.5E-09 3.2E-13 85.6 6.2 61 37-98 2-62 (73)
54 1wwt_A Threonyl-tRNA synthetas 98.7 4.7E-09 1.6E-13 91.0 4.4 74 207-282 6-79 (88)
55 1wyd_A Hypothetical aspartyl-t 98.6 2.3E-07 7.9E-12 102.9 14.1 101 463-583 133-234 (429)
56 1x54_A Asparaginyl-tRNA synthe 98.6 1.3E-07 4.4E-12 105.1 11.6 101 463-583 134-235 (434)
57 3hvz_A Uncharacterized protein 98.6 7.7E-08 2.6E-12 81.7 6.0 61 36-97 6-66 (78)
58 1eov_A ASPRS, aspartyl-tRNA sy 98.5 8.9E-07 3E-11 99.7 15.0 113 463-594 177-292 (487)
59 1n9w_A Aspartyl-tRNA synthetas 98.5 4E-07 1.4E-11 100.8 10.4 100 463-582 124-224 (422)
60 3a74_A Lysyl-tRNA synthetase; 98.4 2.5E-06 8.6E-11 96.1 14.4 113 463-594 173-288 (493)
61 2kmm_A Guanosine-3',5'-BIS(dip 98.4 3.5E-07 1.2E-11 76.0 5.3 64 212-278 2-65 (73)
62 1e1o_A Lysyl-tRNA synthetase, 98.2 6.6E-06 2.3E-10 92.9 14.0 113 463-594 182-297 (504)
63 3hvz_A Uncharacterized protein 98.2 8.7E-07 3E-11 75.2 4.5 67 210-279 5-71 (78)
64 3a5y_A GENX, putative lysyl-tR 98.2 9.4E-06 3.2E-10 87.5 13.6 114 463-594 35-155 (345)
65 3nem_A Aspartyl-tRNA synthetas 97.9 5.2E-05 1.8E-09 84.2 13.4 114 463-595 136-252 (438)
66 3l4g_A Phenylalanyl-tRNA synth 97.9 6.5E-05 2.2E-09 84.4 13.6 140 464-611 224-406 (508)
67 2xgt_A Asparaginyl-tRNA synthe 97.9 6.8E-05 2.3E-09 83.3 13.6 112 463-594 131-244 (435)
68 1b7y_A Phers, protein (phenyla 97.8 0.00014 4.7E-09 78.5 13.3 127 466-606 102-247 (350)
69 3m4p_A Ehasnrs, asparaginyl-tR 97.8 0.00013 4.6E-09 81.3 13.3 112 463-594 155-268 (456)
70 1v4p_A Alanyl-tRNA synthetase; 97.7 1.1E-05 3.7E-10 77.1 3.1 35 327-361 101-136 (157)
71 3bju_A Lysyl-tRNA synthetase; 97.7 0.00033 1.1E-08 79.4 14.7 112 464-594 176-290 (521)
72 1c0a_A Aspartyl tRNA synthetas 97.7 0.00028 9.5E-09 81.1 13.5 110 464-594 138-252 (585)
73 3i7f_A Aspartyl-tRNA synthetas 97.7 0.00017 5.9E-09 81.8 11.6 112 464-594 244-358 (548)
74 2du3_A O-phosphoseryl-tRNA syn 97.6 0.00029 1E-08 79.5 13.0 85 519-612 180-266 (534)
75 1l0w_A Aspartyl-tRNA synthetas 97.6 0.00034 1.1E-08 80.3 13.4 110 464-594 144-258 (580)
76 2rhq_A Phenylalanyl-tRNA synth 97.6 0.00049 1.7E-08 72.5 12.8 128 465-606 53-186 (294)
77 4ex5_A Lysine--tRNA ligase; st 97.6 0.00069 2.4E-08 76.7 14.7 113 463-594 203-318 (529)
78 4ah6_A Aspartate--tRNA ligase, 97.5 0.00058 2E-08 78.5 13.5 108 464-591 148-259 (617)
79 2du7_A O-phosphoseryl-tRNA syn 97.1 0.0021 7.2E-08 72.6 11.4 84 519-611 192-277 (549)
80 2odr_B Phosphoseryl-tRNA synth 96.9 0.0046 1.6E-07 70.5 12.2 86 519-613 199-286 (648)
81 2odr_A Phosphoseryl-tRNA synth 96.9 0.0048 1.6E-07 70.5 12.2 86 519-613 199-286 (665)
82 2odr_D Phosphoseryl-tRNA synth 96.9 0.0049 1.7E-07 70.6 12.2 86 519-613 199-286 (685)
83 2odr_C Phosphoseryl-tRNA synth 96.9 0.0052 1.8E-07 70.5 12.4 86 519-613 199-286 (701)
84 3pco_A Phenylalanyl-tRNA synth 96.9 0.0025 8.4E-08 68.0 9.1 123 465-604 107-234 (327)
85 3l4g_B Phenylalanyl-tRNA synth 96.5 0.026 9.1E-07 64.8 15.1 130 467-607 393-525 (589)
86 3ig2_A Phenylalanyl-tRNA synth 96.0 0.074 2.5E-06 53.0 13.6 137 468-607 7-154 (213)
87 2rhq_B Phenylalanyl-tRNA synth 96.0 0.028 9.6E-07 66.8 11.8 138 463-610 491-638 (795)
88 3ica_A Phenylalanyl-tRNA synth 95.8 0.15 5.1E-06 50.8 14.4 113 467-582 6-122 (213)
89 2ztg_A Alanyl-tRNA synthetase; 95.6 0.0054 1.8E-07 71.8 3.3 83 274-361 640-723 (739)
90 1b7y_B Phers, protein (phenyla 95.3 0.06 2.1E-06 63.8 11.1 131 463-610 487-626 (785)
91 3cmq_A Phenylalanyl-tRNA synth 94.6 0.27 9.2E-06 54.0 13.2 100 467-580 50-163 (415)
92 1tyg_B YJBS; alpha beta barrel 92.1 0.22 7.5E-06 42.7 5.8 60 35-97 18-81 (87)
93 1ryj_A Unknown; beta/alpha pro 90.7 0.4 1.4E-05 39.1 5.8 56 38-97 5-64 (70)
94 1f0z_A THis protein; ubiquitin 90.6 0.45 1.5E-05 38.2 5.8 55 39-97 2-60 (66)
95 2cu3_A Unknown function protei 88.6 0.84 2.9E-05 36.4 6.0 53 40-97 2-58 (64)
96 1tyg_B YJBS; alpha beta barrel 84.2 0.82 2.8E-05 39.2 3.9 62 210-275 18-82 (87)
97 2l32_A Small archaeal modifier 84.1 0.93 3.2E-05 37.5 4.1 55 38-97 3-60 (74)
98 2k5p_A THis protein, thiamine- 83.1 1.3 4.3E-05 37.1 4.5 56 39-97 2-63 (78)
99 2kl0_A Putative thiamin biosyn 83.0 1.3 4.5E-05 36.5 4.5 54 39-97 2-59 (73)
100 1vjk_A Molybdopterin convertin 82.0 0.44 1.5E-05 41.4 1.3 44 54-97 36-92 (98)
101 2eki_A DRG 1, developmentally- 81.4 4.8 0.00016 34.8 7.6 52 48-99 29-87 (93)
102 1rws_A Hypothetical protein PF 79.3 1.7 5.7E-05 36.0 4.0 51 44-97 21-71 (77)
103 3pco_B Phenylalanyl-tRNA synth 78.1 5.3 0.00018 47.4 9.2 128 470-606 494-630 (795)
104 2k5p_A THis protein, thiamine- 77.3 1.4 4.8E-05 36.8 2.9 61 213-276 1-65 (78)
105 2kl0_A Putative thiamin biosyn 77.2 2 6.8E-05 35.4 3.7 59 213-276 1-61 (73)
106 1f0z_A THis protein; ubiquitin 74.9 2.8 9.5E-05 33.4 4.0 59 214-276 2-62 (66)
107 2cu3_A Unknown function protei 70.9 4.9 0.00017 31.8 4.5 54 219-276 5-60 (64)
108 2l32_A Small archaeal modifier 70.9 5.6 0.00019 32.7 5.0 58 212-276 2-62 (74)
109 1ryj_A Unknown; beta/alpha pro 70.0 4.7 0.00016 32.6 4.3 59 212-276 4-66 (70)
110 2eki_A DRG 1, developmentally- 57.4 20 0.00068 30.9 6.0 54 223-277 29-88 (93)
111 1fm0_D Molybdopterin convertin 54.1 11 0.00039 30.7 3.9 44 54-97 25-75 (81)
112 1rws_A Hypothetical protein PF 53.9 9.4 0.00032 31.3 3.3 53 219-276 21-73 (77)
113 3po0_A Small archaeal modifier 51.9 14 0.00047 30.9 4.2 44 54-97 27-83 (89)
114 2q5w_D Molybdopterin convertin 49.4 10 0.00034 30.7 2.8 44 54-97 25-71 (77)
115 3rpf_C Molybdopterin convertin 47.8 19 0.00065 29.1 4.3 44 54-97 20-68 (74)
116 3kew_A DHHA1 domain protein; s 37.4 7.9 0.00027 39.1 0.4 81 274-361 134-215 (241)
117 2g1e_A Hypothetical protein TA 37.3 33 0.0011 28.3 4.3 44 54-97 24-84 (90)
118 2hj1_A Hypothetical protein; s 34.6 25 0.00086 30.5 3.1 48 49-97 31-83 (97)
119 2e1b_A PH0108, 216AA long hypo 32.5 12 0.0004 37.1 0.7 75 283-361 102-202 (216)
120 2y5c_A Adrenodoxin-like protei 32.3 37 0.0013 29.4 3.9 32 208-240 1-36 (109)
121 2g1e_A Hypothetical protein TA 30.8 71 0.0024 26.2 5.3 54 222-276 18-86 (90)
122 3dwg_C 9.5 kDa culture filtrat 30.7 60 0.002 27.1 4.8 44 54-97 25-87 (93)
123 2al3_A TUG long isoform; TUG U 28.1 1.4E+02 0.0047 25.5 6.5 61 37-97 11-79 (90)
124 1vjk_A Molybdopterin convertin 20.8 73 0.0025 27.0 3.6 50 224-276 32-94 (98)
No 1
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=7.9e-97 Score=859.34 Aligned_cols=502 Identities=40% Similarity=0.745 Sum_probs=474.5
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcCc
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNGV 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (715)
++||||||+++.+.. ++||+|||+.||+++++.+++|+|||++|||++||+.||+|+++
T Consensus 2 ~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~-------------------- 60 (642)
T 1qf6_A 2 PVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII-------------------- 60 (642)
T ss_dssp CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEE--------------------
T ss_pred ceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEe--------------------
Confidence 789999999988886 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHH
Q psy10609 118 LWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDK 196 (715)
Q Consensus 118 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (715)
++++++|..++|||++|||++|++++||+ ++++||++++|||||++.+..
T Consensus 61 ------------------~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~----------- 111 (642)
T 1qf6_A 61 ------------------TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT----------- 111 (642)
T ss_dssp ------------------CTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEETTEEEEEEECSSC-----------
T ss_pred ------------------ecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccCCeeEEEEeCCCC-----------
Confidence 99999999999999999999999999976 799999999999999976433
Q ss_pred HHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 197 LKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 197 l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
+|.
T Consensus 112 -----------------------------------------------------------------------------~t~ 114 (642)
T 1qf6_A 112 -----------------------------------------------------------------------------LTQ 114 (642)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred -----------------------------------------------------------------------------CCH
Confidence 566
Q ss_pred CChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHH-hhccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 277 LDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRIL-KEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 277 ~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI-~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
+++..|+..|.++|+++.|+.+..++.++|.++|+. ++++.+++ +...+...+++|+||+|+|+|.|||+++|+...
T Consensus 115 edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~ 194 (642)
T 1qf6_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCH 194 (642)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTEEECCSSCCCSBGGGCC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCEEEecCCCccCCCCcce
Confidence 788899999999999999999999999999999975 55788999 543223478899999999999999999999999
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
+|+|.+ +.++||+|+.++-+|+|++|..||++++|++|++..++++
T Consensus 195 ~fkl~~----------------------------------~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~eea~ 240 (642)
T 1qf6_A 195 HFKLMK----------------------------------TAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAA 240 (642)
T ss_dssp SEEEEE----------------------------------EEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEee----------------------------------eccccccCccCCceeEeeeccccCchhHHhhhhhhhhccc
Confidence 999888 6677999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 513 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~ 513 (715)
+||||+||++++||++++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|++||||++|.++||..
T Consensus 241 ~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~ 320 (642)
T 1qf6_A 241 KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT 320 (642)
T ss_dssp TTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEE
T ss_pred cCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred eecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHH
Q psy10609 514 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 593 (715)
Q Consensus 514 ~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~ 593 (715)
+.++++++||||+|++++.+|+++++||++||+|++|+|+|||+|+++..+||+|+|||+|+|+|+||+++++++|+.++
T Consensus 321 d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~ 400 (642)
T 1qf6_A 321 SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGC 400 (642)
T ss_dssp EETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHH
T ss_pred ecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHH
Confidence 33578999999999999999999999999999999999999999999655899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCc-EEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCcccc
Q psy10609 594 LDFLRNVYSIFGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC 672 (715)
Q Consensus 594 l~~~~~il~~LGl-~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~ 672 (715)
++++.++|+.||| +|++.+++++++++|+.+.|+++++.++++|+..|++|.+++|+|+|||||+|+++.|++|+.|||
T Consensus 401 i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~ 480 (642)
T 1qf6_A 401 IRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQC 480 (642)
T ss_dssp HHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEe
Confidence 9999999999999 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCcccccCcEEEcCCCceeccc
Q psy10609 673 ATIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 673 ~TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
||+|+||++|+|||++|++.||++++|.
T Consensus 481 gti~~df~l~~r~~~~y~~~~g~~~~P~ 508 (642)
T 1qf6_A 481 GTVQLDFSLPSRLSASYVGEDNERKVPV 508 (642)
T ss_dssp EEEEEESSHHHHTTCCEECTTSCEECCE
T ss_pred eeEEEeccCCccCCCEEEecCCCCcCcE
Confidence 9999999999999999999999988873
No 2
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=3.8e-92 Score=822.10 Aligned_cols=503 Identities=40% Similarity=0.721 Sum_probs=471.3
Q ss_pred cceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhc
Q psy10609 36 ALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVN 115 (715)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (715)
.+++||+|||+++.+.. +||++|||+.|++++++.+++|+|||++|||++|++.||+|+++
T Consensus 2 ~~~~i~~~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~------------------ 62 (645)
T 1nyr_A 2 EQINIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV------------------ 62 (645)
T ss_dssp --CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEE------------------
T ss_pred CceEEEeCCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEe------------------
Confidence 46889999999988876 89999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHH
Q psy10609 116 GVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLW 194 (715)
Q Consensus 116 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (715)
++++++|..+||||++|||++|++++||+ .+++||++++|||||+..+..
T Consensus 63 --------------------~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~~~g~~~Df~~~~~--------- 113 (645)
T 1nyr_A 63 --------------------TPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQN--------- 113 (645)
T ss_dssp --------------------CTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSC---------
T ss_pred --------------------eccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCceEEEecCCCC---------
Confidence 99999999999999999999999999976 799999999999999975433
Q ss_pred HHHHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCcccccc
Q psy10609 195 DKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274 (715)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~I 274 (715)
+
T Consensus 114 -------------------------------------------------------------------------------~ 114 (645)
T 1nyr_A 114 -------------------------------------------------------------------------------I 114 (645)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCC-CcEEEEeeCCcccccCCccccCcChhh
Q psy10609 275 STLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNT-PTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 275 t~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi-~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
|.+++..|+..|.++|+++.|+.+..++.++|.++|.+++++.+|++. .|. ..+.+|+||+|+|+|.|||+++|+...
T Consensus 115 t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~-~~~~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~ 193 (645)
T 1nyr_A 115 SSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDA-IPEDENVTLYSQGDFTDLCRGVHVPSTAKIK 193 (645)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCC-CSSSCCCEEEEETTEEEECCSCCCSCGGGCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhc-CCCCCeeEEEEECCEEEecCCcccCCCCCCc
Confidence 788999999999999999999999999999999999765678899975 343 478889999999999999999999998
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCChhhhHHHHHHHHHHh
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAA 433 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~ 433 (715)
+|+|.++ .+++|.|..++-+|+|++|.+|+++.+|.+|++..++++
T Consensus 194 ~fkl~~~----------------------------------~~a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l~ea~ 239 (645)
T 1nyr_A 194 EFKLLST----------------------------------AGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERK 239 (645)
T ss_dssp EEEEEEE----------------------------------EEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEeee----------------------------------CchHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhhhhhh
Confidence 8888873 335888888999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCcceeccC-CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceE
Q psy10609 434 KRDHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 512 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~-~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~ 512 (715)
+||||+||++++||++++. ++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|++||||+.|.++||.
T Consensus 240 ~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~ 319 (645)
T 1nyr_A 240 ERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFP 319 (645)
T ss_dssp HTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCC
T ss_pred hhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcce
Confidence 9999999999999999996 899999999999999999999999999999999999999999999999999999999999
Q ss_pred Eee-cC-ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHH
Q psy10609 513 FDV-EN-ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 590 (715)
Q Consensus 513 ~~d-~~-~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~ 590 (715)
+.+ ++ +.++||||+|++++.+|++..+||++||+|++|+|+|||+|++|.++||+|+|||+|+|+|+||+++++.+++
T Consensus 320 ~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~ 399 (645)
T 1nyr_A 320 PMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEF 399 (645)
T ss_dssp CEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHH
T ss_pred eEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHH
Confidence 866 47 8999999999999999999999999999999999999999999866899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCc-EEEEEEccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC
Q psy10609 591 VGALDFLRNVYSIFGF-TFNLRLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 665 (715)
Q Consensus 591 ~~~l~~~~~il~~LGl-~~~v~l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~ 665 (715)
.+++.++.++|+.||| +|++.+++++ ++++|+.+.|++++..|+++|+..|++|.+.+|+++|||||+|+++.|+
T Consensus 400 ~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~ 479 (645)
T 1nyr_A 400 KRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTA 479 (645)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhh
Confidence 9999999999999999 5999999987 7899999999999999999999999999999999999999999999999
Q ss_pred CCCccccccceeccCcccccCcEEEcCCCceeccc
Q psy10609 666 LKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 666 ~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
+||.|||||+|+||++|+|||++|++.+|+++.|.
T Consensus 480 lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~ 514 (645)
T 1nyr_A 480 MGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPV 514 (645)
T ss_dssp TSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCE
T ss_pred hCchhhcceEEeecccccccceEEECCCCCccCcE
Confidence 99999999999999999999999999999988874
No 3
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=5.9e-59 Score=521.54 Aligned_cols=271 Identities=51% Similarity=0.972 Sum_probs=260.1
Q ss_pred HHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHH-HHcCcEEEecCcccchhhhhhhCcccccCCC
Q psy10609 431 EAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEY-RKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 509 (715)
Q Consensus 431 e~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~-~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e 509 (715)
.+++|||++||++++||++++.++|+++|+|.|+.++++|++++++.+ .++||++|.||+|++.++|++||||+.|.++
T Consensus 31 ~~~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~e 110 (460)
T 3uh0_A 31 ATPATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADD 110 (460)
T ss_dssp CCHHHHHHHHHHHHTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGG
T ss_pred CCCCCCHHHHHHhCCCceeccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccc
Confidence 457899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEeec---CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhH
Q psy10609 510 MFSFDVE---NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI 586 (715)
Q Consensus 510 my~~~d~---~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa 586 (715)
||.+.+. ++.++||||+|++++.+|+++++||++||+|++|+|+|||+|+++.++||+|+|||+|+|+|+||+++++
T Consensus 111 my~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~ 190 (460)
T 3uh0_A 111 MFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQV 190 (460)
T ss_dssp SCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGH
T ss_pred eEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHH
Confidence 9999874 6889999999999999999999999999999999999999999986689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHcCcE---------EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc
Q psy10609 587 GDEIVGALDFLRNVY-SIFGFT---------FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP 656 (715)
Q Consensus 587 ~~E~~~~l~~~~~il-~~LGl~---------~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp 656 (715)
++|+.++++++.++| +.|||+ |++.+++++++|+|+.+.|++++..|+++|+.+|++|.+++|+|+||||
T Consensus 191 ~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygp 270 (460)
T 3uh0_A 191 KSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGP 270 (460)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccc
Confidence 999999999999999 999997 8999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccc
Q psy10609 657 KIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELP 701 (715)
Q Consensus 657 kid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~ 701 (715)
|||+.+.|++||.|||+|+||||++|+||+++|.|+||++++|..
T Consensus 271 kid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ 315 (460)
T 3uh0_A 271 KLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIM 315 (460)
T ss_dssp EEEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTTSCEECCEE
T ss_pred eEEEEEEccCCCeeeecccccccccccccceEEECCCCCccCcEE
Confidence 999999999999999999999999999999999999999988743
No 4
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=4.6e-51 Score=451.09 Aligned_cols=266 Identities=47% Similarity=0.900 Sum_probs=253.7
Q ss_pred hhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe
Q psy10609 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514 (715)
Q Consensus 435 rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~ 514 (715)
|||++||++++||++++.++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|++|||++.|.++||..+
T Consensus 1 ~dh~~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d 80 (401)
T 1evl_A 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS 80 (401)
T ss_dssp CCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEE
T ss_pred CChHHHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEe
Confidence 69999999999999999899999999999999999999999999999999999999999999999999999999999943
Q ss_pred ecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHH
Q psy10609 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 594 (715)
Q Consensus 515 d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l 594 (715)
.+++.++||||+|++++.++++++.++++||+|++|+|+|||+|.++..+||+|+|||+|.|+|+||+++++++|+.+++
T Consensus 81 ~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i 160 (401)
T 1evl_A 81 SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCI 160 (401)
T ss_dssp ETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred cCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999983237999999999999999999889999999999
Q ss_pred HHHHHHHHHcCc-EEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecCCCCccccc
Q psy10609 595 DFLRNVYSIFGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673 (715)
Q Consensus 595 ~~~~~il~~LGl-~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~~q~~ 673 (715)
+++.++|+.||| +|++.++++++++.|+.+.|+++++.++++|+.+|++|++.+++++||||++|+.+.|+.|+.|+||
T Consensus 161 ~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~g 240 (401)
T 1evl_A 161 RLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240 (401)
T ss_dssp HHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHcCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEee
Confidence 999999999999 6999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCcccccCcEEEcCCCceeccc
Q psy10609 674 TIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 674 TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
|+|+||++++|||++|.+.+|+++.|.
T Consensus 241 t~~~d~~l~~~~~~~y~~~~g~~~~p~ 267 (401)
T 1evl_A 241 TVQLDFSLPSRLSASYVGEDNERKVPV 267 (401)
T ss_dssp EEEEESSHHHHTTCCEECTTSCEECCE
T ss_pred eeeeccccccccCCEEECCCCCCcCcE
Confidence 999999999999999999999987773
No 5
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1.7e-44 Score=406.47 Aligned_cols=271 Identities=35% Similarity=0.590 Sum_probs=249.8
Q ss_pred HHHHHHHHHhhhhHH--HHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhC
Q psy10609 424 EWEKLQEEAAKRDHR--KIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG 501 (715)
Q Consensus 424 ~~~~~~ee~~~rdH~--~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG 501 (715)
++.+..+++++|||+ +||+++++| .++|+++|+|.|+.++++|++++++.+.++||++|.||.|++.++|.++|
T Consensus 11 ~~~~~~~~~~~~~h~~~~lg~~~~~~----~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg 86 (471)
T 3a32_A 11 DYAYELDITVKPDSRVPVFNREFATF----TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSG 86 (471)
T ss_dssp HHHHHTTSBCCTTSBCTTTCSBTHHH----HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTC
T ss_pred HHHHHcCccccCCchhHHHHHhcCCc----cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhcc
Confidence 445556677889998 899999887 47899999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC---CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEE
Q psy10609 502 HWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR---ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH 578 (715)
Q Consensus 502 ~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~---~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~ 578 (715)
|++.|.++||+++.+++.++||||+|+++++++++++.+++ +||+|+||+|+|||+|++++++||+|+|||+|.|+|
T Consensus 87 ~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e 166 (471)
T 3a32_A 87 HIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAH 166 (471)
T ss_dssp CCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEE
T ss_pred CccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeE
Confidence 99999999999954588999999999999999999999998 999999999999999999977799999999999999
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHHH-cCc----E-EEEEEccCC-----CCCCCCHHHHHHHHHHHHHHHHhc----CCC
Q psy10609 579 IFCTVEQIGDEIVGALDFLRNVYSI-FGF----T-FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNSF----GEP 643 (715)
Q Consensus 579 if~~~eqa~~E~~~~l~~~~~il~~-LGl----~-~~v~l~~~~-----ek~~gd~e~w~~a~~~L~~~L~~~----g~~ 643 (715)
+||.++++.+++.+++.++.++|+. ||| + |++.+++++ ++++|..+.|+++++.+.+.++.. |++
T Consensus 167 ~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~ 246 (471)
T 3a32_A 167 IIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGID 246 (471)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999998889999999999999999 999 4 999999998 889999999999998887776654 888
Q ss_pred ccccCCCCccccceeeEEeec---CCCCccccccceeccCcccccCcEEEc--CCCceecc
Q psy10609 644 WTENPGDGAFYGPKIDITITD---ALKRPHQCATIQLDFQLPIRFNLAYVK--NVRAQTHE 699 (715)
Q Consensus 644 ~~~~~g~~afYgpkid~~~~D---~~gr~~q~~TiQlDf~~~~rf~l~Y~~--~dg~~~~~ 699 (715)
+...++.++||||+++..+.| ++++.+|+||+|+|++++++|+++|.+ +||.. .|
T Consensus 247 ~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~-e~ 306 (471)
T 3a32_A 247 IVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIE-EV 306 (471)
T ss_dssp EEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCS-CE
T ss_pred eEecccchhhCCCccceEEeccHHhhhhhheeeeEEecccccccCCceEeccccCCce-ee
Confidence 888899999999999999989 889999999999999999999999999 88887 44
No 6
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=4.1e-44 Score=399.06 Aligned_cols=251 Identities=18% Similarity=0.248 Sum_probs=210.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHhhhcCcceecc-----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch
Q psy10609 420 KQLKEWEKLQEEAAKRDHRKIGREQELFFFHE-----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494 (715)
Q Consensus 420 ~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~-----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~ 494 (715)
..++.|+..+. ++++||++||++++||+|++ .|+|+++|+|.|++|+++|++|+++.+.+.||++|.||.|.+.
T Consensus 160 ~~v~~~g~~~~-~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~ 238 (484)
T 3lss_A 160 TVVRTFGNTTK-RAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNR 238 (484)
T ss_dssp EEEEEESCTTC-CCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEH
T ss_pred EEEEecCCCCC-CCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccH
Confidence 34566665543 68899999999999999983 3789999999999999999999999999999999999999999
Q ss_pred hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC--C-CCCCcceeee
Q psy10609 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS--G-ALTGLTRVRR 571 (715)
Q Consensus 495 el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~--~-~l~GL~R~RE 571 (715)
++|.+||||++|.++||++.+++++++|+||+|++++.+++++++||++||+|++++|+|||+|++ | .++||+|+||
T Consensus 239 ~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~Rvrq 318 (484)
T 3lss_A 239 DVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQ 318 (484)
T ss_dssp HHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSE
T ss_pred HHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeee
Confidence 999999999999999999987778999999999999999999999999999999999999999995 3 4689999999
Q ss_pred EeEeeEEEEeCchh--HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC-----CCCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy10609 572 FQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE-----KYLGELEVWNKAEKQLEASLNSFGEPW 644 (715)
Q Consensus 572 Ftq~d~~if~~~eq--a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e-----k~~gd~e~w~~a~~~L~~~L~~~g~~~ 644 (715)
|+|+|+|+||.|++ +.+++.++++++.++|+.|||+|++.....++ ....|.|.|
T Consensus 319 F~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w------------------ 380 (484)
T 3lss_A 319 FDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAW------------------ 380 (484)
T ss_dssp EEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEE------------------
T ss_pred EEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchhheechhee------------------
Confidence 99999999999998 99999999999999999999999986533221 111123333
Q ss_pred cccCCCCccccceeeEEeecCCCCc-cccccceeccCcccccCcEEEcCC----CceecccccccccC
Q psy10609 645 TENPGDGAFYGPKIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVKNV----RAQTHELPRTLSDI 707 (715)
Q Consensus 645 ~~~~g~~afYgpkid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~d----g~~~~~~~~~~~~~ 707 (715)
.|+.+.| ++ .+||.+ .||| ++|++++|.+++ ++.+.-++||||+-
T Consensus 381 --~P~~~~~--------------~EIsS~Snc-~dyq-Arr~~iry~~~~~~~~~~~~~~~vhtlNgt 430 (484)
T 3lss_A 381 --FPASGAF--------------RELVSCSNC-TDYQ-SQSVNCRYGPNLRGTAAQNVKEYCHMLNGT 430 (484)
T ss_dssp --ETTTTEE--------------EEEEEEEEC-TTHH-HHHHTCEESSCCC----CCSCEECEEEEEE
T ss_pred --cCCCCCe--------------eEEEEecCc-cccc-ccccceEEeccccccccCCCceeeeEEecc
Confidence 2333333 22 556665 6999 999999999875 22223357999964
No 7
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.7e-42 Score=390.89 Aligned_cols=245 Identities=23% Similarity=0.368 Sum_probs=217.9
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhh
Q psy10609 419 NKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ 498 (715)
Q Consensus 419 ~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~ 498 (715)
..++.+|.. +|+.++||++++..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.
T Consensus 21 ~~~f~~wy~-----------~l~~~aglid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~ 89 (518)
T 3ial_A 21 RDTFADWFD-----------AIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLK 89 (518)
T ss_dssp TTTHHHHHH-----------HHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHT
T ss_pred cccccHHHH-----------HHHHHCCCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHH
Confidence 457777773 577889999984457999999999999999999999999999999999999999999996
Q ss_pred -hhCcccccCCCceEEeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeE
Q psy10609 499 -TSGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRF 572 (715)
Q Consensus 499 -~sG~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REF 572 (715)
.+||++.|.++||.+.++ ++.++||||+|++++.+|+++++||++||+|++|+|+|||+|.++. +||+|+|||
T Consensus 90 k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~-~GL~R~REF 168 (518)
T 3ial_A 90 KESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNT-KPLIRVREI 168 (518)
T ss_dssp SSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSC-BTTTBCSEE
T ss_pred hhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCC-CCCceeeEE
Confidence 699999999999999875 4789999999999999999999999999999999999999997765 899999999
Q ss_pred eEeeEEEE-eCchhHHHHHHHHHHHHHHHH-HHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCC
Q psy10609 573 QQDDAHIF-CTVEQIGDEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGD 650 (715)
Q Consensus 573 tq~d~~if-~~~eqa~~E~~~~l~~~~~il-~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~ 650 (715)
+|+|+|+| |+++++++|+..+++++.++| +.|||+|++.... + |+ .+.
T Consensus 169 ~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~--~--------~e--------------------~~~ 218 (518)
T 3ial_A 169 HWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRV--C--------WD--------------------RFP 218 (518)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEEC--G--------GG--------------------CCT
T ss_pred EEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecC--h--------hh--------------------ccC
Confidence 99999999 567899999999999999999 9999998765421 1 21 234
Q ss_pred CccccceeeEEeecCCCCccccccce-eccCcccccCcEEEcCCCceecccccccccCC
Q psy10609 651 GAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHELPRTLSDIR 708 (715)
Q Consensus 651 ~afYgpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~~ 708 (715)
||+|+++||+.+.| ||.||+||+| ||+++|+||+|+|.|+||++++| -++..|+.
T Consensus 219 gA~yt~~iE~~~pd--gr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~-h~~~~G~~ 274 (518)
T 3ial_A 219 GADYSEVSDVVMPC--GRVLQTAGIHNLGQRFSSTFDILYANKANESVHP-YLTCAGIS 274 (518)
T ss_dssp TCSEEEEEEEECTT--SCEEEEEEEEEEETHHHHHTTCCEECTTCCEECC-EEEEEEEE
T ss_pred CCccceEEEEEcCC--CCEEEEeceecccchhhhhcCcEEECCCCCEeee-EEeccchH
Confidence 78999999998877 8999999999 89999999999999999999887 34555543
No 8
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=397.13 Aligned_cols=248 Identities=16% Similarity=0.287 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhh
Q psy10609 421 QLKEWEKLQEEAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 496 (715)
Q Consensus 421 ~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el 496 (715)
+++.|+.++ .++++||++||++++||||++ +|+|+++|+|.|++|+++|++|+++.+.+.||++|.||.|.+.++
T Consensus 155 ~vr~~g~~~-~~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el 233 (522)
T 3vbb_A 155 VERIWGDCT-VRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEV 233 (522)
T ss_dssp EEEEESCSS-CCCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHH
T ss_pred EEEEeCCCC-CCCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHH
Confidence 355555443 246789999999999999987 279999999999999999999999999999999999999999999
Q ss_pred hhhhCcccccCCCceEEeec---------CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCC
Q psy10609 497 WQTSGHWAHYSENMFSFDVE---------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALT 564 (715)
Q Consensus 497 ~~~sG~~~~~~~emy~~~d~---------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~ 564 (715)
|.+||||++|.++||.+.++ +++++|+||+|++++.+++++++||++||+|++++|+|||+|+++ .++
T Consensus 234 ~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~Grdtr 313 (522)
T 3vbb_A 234 MQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTR 313 (522)
T ss_dssp HHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CC
T ss_pred HhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCC
Confidence 99999999999999999764 468999999999999999999999999999999999999999973 479
Q ss_pred CcceeeeEeEeeEEEEeCchh--HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC-----CCCCCHHHHHHHHHHHHHHH
Q psy10609 565 GLTRVRRFQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE-----KYLGELEVWNKAEKQLEASL 637 (715)
Q Consensus 565 GL~R~REFtq~d~~if~~~eq--a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e-----k~~gd~e~w~~a~~~L~~~L 637 (715)
||+|+|||+|+|+|+||.|++ +++++.++++++.++|+.|||+|++.....++ ....|.|.|
T Consensus 314 GL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w----------- 382 (522)
T 3vbb_A 314 GIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAW----------- 382 (522)
T ss_dssp CSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEE-----------
T ss_pred CcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEe-----------
Confidence 999999999999999999987 99999999999999999999999886533221 111233333
Q ss_pred HhcCCCccccCCCCccccceeeEEeecCCCCc-cccccceeccCcccccCcEEEcC---CCceecccccccccC
Q psy10609 638 NSFGEPWTENPGDGAFYGPKIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVKN---VRAQTHELPRTLSDI 707 (715)
Q Consensus 638 ~~~g~~~~~~~g~~afYgpkid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~---dg~~~~~~~~~~~~~ 707 (715)
.|+.+.| ++ .+||.+ .||| ++|++|+|.++ +|+.+ +++|||+-
T Consensus 383 ---------~P~~~~y--------------~EIsScSnc-~Dyq-Arr~~iry~~~~~~~~k~~--~vhtlNgs 429 (522)
T 3vbb_A 383 ---------FPGSGAF--------------RELVSCSNC-TDYQ-ARRLRIRYGQTKKMMDKVE--FVHMLNAT 429 (522)
T ss_dssp ---------ETTTTEE--------------EEEEEEEEC-TTHH-HHHHTCEESCC---CCCCC--BCEEEEEE
T ss_pred ---------cCCCCce--------------eEEEEecCC-CCCc-cceeeeEEccccccCCCee--eceEEecc
Confidence 2333333 23 456666 7999 99999999986 55553 46999864
No 9
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=4.3e-43 Score=393.99 Aligned_cols=251 Identities=20% Similarity=0.309 Sum_probs=214.3
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHhhhcCcceeccC----CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch
Q psy10609 420 KQLKEWEKLQE-EAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494 (715)
Q Consensus 420 ~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~----~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~ 494 (715)
.+++.|+.+++ .++++||++||+++|||||+.. |+|+++|+|.|++++++|++++++.+.+.||++|.||.|.+.
T Consensus 170 ~~v~~~g~~~~~~f~~~dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~ 249 (501)
T 1wle_A 170 RVLHVVGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRG 249 (501)
T ss_dssp EEEEEESCCCCCSSCCCCHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred eEEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 34556665444 4678999999999999999863 699999999999999999999999999999999999999999
Q ss_pred hhhhhhCcccccCC-CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC--CCCCcceee
Q psy10609 495 KLWQTSGHWAHYSE-NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG--ALTGLTRVR 570 (715)
Q Consensus 495 el~~~sG~~~~~~~-emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~--~l~GL~R~R 570 (715)
++|.+||||+.|.+ +||++.++ +++++|+||+|++++.++++++.||++||+|++++|+|||+|++. .++||+|+|
T Consensus 250 ~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~Rvh 329 (501)
T 1wle_A 250 VVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVH 329 (501)
T ss_dssp HHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCS
T ss_pred HHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeee
Confidence 99999999999998 99999775 578999999999999999999999999999999999999999982 268999999
Q ss_pred eEeEeeEEEEeCc--hhHHHHHHHHHHHHHHHHHHcCcEEEEE-EccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy10609 571 RFQQDDAHIFCTV--EQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRP----EKYLGELEVWNKAEKQLEASLNSFGEP 643 (715)
Q Consensus 571 EFtq~d~~if~~~--eqa~~E~~~~l~~~~~il~~LGl~~~v~-l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~ 643 (715)
||+|+|+|+||.+ +++.+++.++++++.++|+.|||+|++. ++++. ....+|.|+|
T Consensus 330 qF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w----------------- 392 (501)
T 1wle_A 330 HFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAW----------------- 392 (501)
T ss_dssp EEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEE-----------------
T ss_pred eeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCchhheecHhhc-----------------
Confidence 9999999999999 5999999999999999999999999875 44431 2223344555
Q ss_pred ccccCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 644 WTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 644 ~~~~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
.|+++.| +..++|+.+ .||| |+||+++|.++||+.++ ++|||+.
T Consensus 393 ---~p~~~~~-------------~Ei~s~sn~-~Dfq-arR~~iry~~~~gk~~~--vHtlngS 436 (501)
T 1wle_A 393 ---MPGRGRF-------------GEVTSASNC-TDFQ-SRRLHIMFQTEAGELQF--AHTVNAT 436 (501)
T ss_dssp ---ETTTTEE-------------EEEEEEEEC-TTHH-HHHHTCEEECSSSCEEE--CEEEEEE
T ss_pred ---ccccccc-------------eeEEecccc-ccch-hhhcCcEEECCCCCEEE--EEEECCc
Confidence 3444444 112677755 8998 99999999999988764 5799874
No 10
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.3e-43 Score=391.30 Aligned_cols=250 Identities=17% Similarity=0.355 Sum_probs=214.3
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHhhhcCcceeccC----CCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccch
Q psy10609 420 KQLKEWEKLQE-EAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494 (715)
Q Consensus 420 ~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~~----~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~ 494 (715)
..++.|+.++. .++++||++||++++||+|++. |+|+++|+|.|++++++|++++++.+.++||++|.||.|++.
T Consensus 123 ~~~~~~g~~~~~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~ 202 (425)
T 2dq3_A 123 VEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKP 202 (425)
T ss_dssp EEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred EEEEEeCCCCCCCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 44555555433 4678999999999999999874 799999999999999999999999999999999999999999
Q ss_pred hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeee
Q psy10609 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRR 571 (715)
Q Consensus 495 el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~RE 571 (715)
++|.+|||++.|.++||++. ++.++||||+|++++.+|++++.++++||+|++++|+|||+|+++ .++||+|+||
T Consensus 203 ~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~re 280 (425)
T 2dq3_A 203 EILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQ 280 (425)
T ss_dssp HHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSE
T ss_pred HHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccc
Confidence 99999999999999999885 468999999999999999999999999999999999999999976 3689999999
Q ss_pred EeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEE-EEccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccc
Q psy10609 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL-RLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTE 646 (715)
Q Consensus 572 Ftq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v-~l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~ 646 (715)
|+|+|+|+||+++++++++.+++.++.++|+.|||+|++ .++++. ....+|.|.|.
T Consensus 281 F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~gdlg~~a~~~~diE~w~------------------- 341 (425)
T 2dq3_A 281 FDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWF------------------- 341 (425)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCTTCSEEEEEEEEE-------------------
T ss_pred eEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCcCCChHHhccchhhcc-------------------
Confidence 999999999999999999999999999999999999884 456542 23334455552
Q ss_pred cCCCCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 647 NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 647 ~~g~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
|+++.| +..++|||+ .||| |+||+++|.++||.+.+ ++||++|.
T Consensus 342 -p~~~~~-------------~ei~s~sn~-~Dfq-a~r~~i~y~~~~~~k~~-~vHtl~Gs 385 (425)
T 2dq3_A 342 -PSQNKY-------------REISSCSNC-EDFQ-ARRMNTRFKDSKTGKNR-FVHTLNGS 385 (425)
T ss_dssp -GGGTEE-------------EEEEEEEEC-TTHH-HHHHTEEEECTTTCSEE-ECEEEEEE
T ss_pred -chhHHH-------------HHHHHcCCc-cccC-cccCCeEEECCCCCeeE-EEEEEecc
Confidence 222233 123789999 9999 99999999999965444 47899875
No 11
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=7.2e-43 Score=389.72 Aligned_cols=239 Identities=13% Similarity=0.157 Sum_probs=207.2
Q ss_pred HhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC
Q psy10609 432 AAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS 507 (715)
Q Consensus 432 ~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~ 507 (715)
++++||++||+++|||+|++ .|+|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.+||||+.|.
T Consensus 157 ~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 236 (455)
T 2dq0_A 157 WKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE 236 (455)
T ss_dssp SCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH
T ss_pred CccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh
Confidence 67899999999999999985 47999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCC---CCCCcceeeeEeEeeEEEEeCch
Q psy10609 508 ENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTVE 584 (715)
Q Consensus 508 ~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~~~e 584 (715)
++||.+.+ ++++||||+|++++.+|++++.|+++||+|++++|+|||+|+++ .++||+|+|||+|+|+|+||+|+
T Consensus 237 ~emy~~~d--~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe 314 (455)
T 2dq0_A 237 DVIYKVED--EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE 314 (455)
T ss_dssp HTCCBBTT--SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT
T ss_pred HhhCeecC--CcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHH
Confidence 99999864 68999999999999999999999999999999999999999984 47899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEee-
Q psy10609 585 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITIT- 663 (715)
Q Consensus 585 qa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~- 663 (715)
++.+++.++++++.++|+.|||+|++...+.++...+... +.|+.+.
T Consensus 315 ~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~gdlg~~a~~--------------------------------~~diE~w~ 362 (455)
T 2dq0_A 315 ESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAK--------------------------------KYDIEAWM 362 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSE--------------------------------EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEECCCccccChhhc--------------------------------eeeeeeec
Confidence 9999999999999999999999999877655443322111 2233322
Q ss_pred cCCCCccccccce--eccCcccccCcEEEcC-CCceecccccccccC
Q psy10609 664 DALKRPHQCATIQ--LDFQLPIRFNLAYVKN-VRAQTHELPRTLSDI 707 (715)
Q Consensus 664 D~~gr~~q~~TiQ--lDf~~~~rf~l~Y~~~-dg~~~~~~~~~~~~~ 707 (715)
++.|+.+++++++ .||| |+||+|+|.++ ||+.+ ++||+|+.
T Consensus 363 p~~~~~~ei~s~s~c~Dfq-arR~~iry~~~~~g~~~--~vHtlngs 406 (455)
T 2dq0_A 363 PGQGKFREVVSASNCTDWQ-ARRLNIRFRDRTDEKPR--YVHTLNST 406 (455)
T ss_dssp TTTTEEEEEEEEEECTTTT-HHHHTEEEESSTTSCCE--ECEEEEEE
T ss_pred CcCCcccEEEeeccchhhH-hhccCcEEecCCCCcEE--EEEEEech
Confidence 2345556666665 4888 99999999998 88775 46798765
No 12
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=8.2e-43 Score=395.32 Aligned_cols=251 Identities=20% Similarity=0.303 Sum_probs=210.8
Q ss_pred ChhhhHHHHHHHH-HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCccc
Q psy10609 418 DNKQLKEWEKLQE-EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 492 (715)
Q Consensus 418 ~~~~L~~~~~~~e-e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~ 492 (715)
++..++.|+.++. .++++||++||+++|||| ++ .|+|+++|+|.|++++++|++++++.+.+.||++|.||.|.
T Consensus 225 ~n~~~~~~g~~~~~~~~~~dH~~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv 303 (536)
T 3err_A 225 ANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYA 303 (536)
T ss_dssp GCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEE
T ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccc
Confidence 4555677776555 568899999999999999 76 27999999999999999999999999999999999999999
Q ss_pred chhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC--C-CCCCccee
Q psy10609 493 NVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS--G-ALTGLTRV 569 (715)
Q Consensus 493 ~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~--~-~l~GL~R~ 569 (715)
+.++|.+||||++|.++||++.+ ++++|+||+|++++.+++++++||++||+|++++|+|||+|++ | .++||+|+
T Consensus 304 ~~~l~~~sG~~~~f~e~mf~~~~--~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~Rv 381 (536)
T 3err_A 304 REKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV 381 (536)
T ss_dssp EHHHHHHHTCTTTTGGGCCEETT--TTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSC
T ss_pred cHHHHHhcCCcccChhhceEecC--CCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceee
Confidence 99999999999999999999865 5899999999999999999999999999999999999999995 3 36899999
Q ss_pred eeEeEeeEEEEeCch--hHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccc
Q psy10609 570 RRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTEN 647 (715)
Q Consensus 570 REFtq~d~~if~~~e--qa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~ 647 (715)
|||+|+|+|+||.|+ ++++++.++++++.++|+.|||+|++.....++
T Consensus 382 rqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgd------------------------------ 431 (536)
T 3err_A 382 HQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGD------------------------------ 431 (536)
T ss_dssp SEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTT------------------------------
T ss_pred eeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcc------------------------------
Confidence 999999999999998 999999999999999999999999986543321
Q ss_pred CCCCccccceeeEEeecCC-CC--c-cccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 648 PGDGAFYGPKIDITITDAL-KR--P-HQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 648 ~g~~afYgpkid~~~~D~~-gr--~-~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
.|.++. -+.|+.+.-.. ++ + .+|+.+ .||| ++|++++|.+++|+.++ ++|||+-
T Consensus 432 lg~~a~--~~yDiE~w~p~~~~~~Ei~s~sn~-~dyq-arr~~iry~~~~~k~~~--vhtlngs 489 (536)
T 3err_A 432 MGPGKW--RQVDIEVYLPSEGRYRETHSCSAL-LDWQ-ARRANLRYRDPEGRVRY--AYTLNNT 489 (536)
T ss_dssp SCTTCS--EEEEEEEEEGGGTEEEEEEEEEEE-ETHH-HHHHTCEEECTTSCEEE--CEEEEEE
T ss_pred cCCChh--heeeeeEecCCCCCeEEEEEecCc-cChh-hcccCeEEECCCCCeEe--eeEEecc
Confidence 111111 12233222211 22 2 445554 6999 99999999999988765 5899965
No 13
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=7.9e-43 Score=386.40 Aligned_cols=236 Identities=19% Similarity=0.320 Sum_probs=205.2
Q ss_pred HhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC
Q psy10609 432 AAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS 507 (715)
Q Consensus 432 ~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~ 507 (715)
++++||++||+++|||+ ++ .|+|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.+|||++.|.
T Consensus 131 ~~~~~H~~lg~~l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 209 (421)
T 1ses_A 131 FPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYR 209 (421)
T ss_dssp SCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTG
T ss_pred CCCCCHHHHHHHcCccc-cccccccCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCc
Confidence 67899999999999999 76 37999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecCceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCC---CCCcceeeeEeEeeEEEEeCc-
Q psy10609 508 ENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCTV- 583 (715)
Q Consensus 508 ~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~---l~GL~R~REFtq~d~~if~~~- 583 (715)
++||.+.+ ++++|+||+|++++.++++++.++++||+|++++|+|||+|+++. .+||+|+|||+|+|+|+||.|
T Consensus 210 ~emy~~~d--~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~ 287 (421)
T 1ses_A 210 DQVWAIAE--TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEAS 287 (421)
T ss_dssp GGSCBBTT--SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSC
T ss_pred hhcEEEcC--CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCC
Confidence 99999864 689999999999999999999999999999999999999998532 489999999999999999999
Q ss_pred -hhHHHHHHHHHHHHHHHHHHcCcEEEE-EEccCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccce
Q psy10609 584 -EQIGDEIVGALDFLRNVYSIFGFTFNL-RLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPK 657 (715)
Q Consensus 584 -eqa~~E~~~~l~~~~~il~~LGl~~~v-~l~~~~----ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpk 657 (715)
+++++++.++++++.++|+.|||+|++ .++++. +...+|.|+| .|+.+.|
T Consensus 288 ~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~t~dlg~~a~~~~DiE~w--------------------~p~~~~~---- 343 (421)
T 1ses_A 288 LEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVY--------------------LPSEGRY---- 343 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCHHHHCTTCSEEEEEEEE--------------------ETTTTEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCccCCchhhhcccHhhe--------------------echhccc----
Confidence 899999999999999999999999886 444321 2233344444 2333333
Q ss_pred eeEEeecCCCCccccccceeccCcccccCcEEEcCCCceecccccccccC
Q psy10609 658 IDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTLSDI 707 (715)
Q Consensus 658 id~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~~~~ 707 (715)
...++|+++ .||| |+||+++|.+++|+.++ ++|+|+-
T Consensus 344 ---------~ei~s~s~~-~Dfq-arr~~i~y~~~~~~~~~--vhtlngs 380 (421)
T 1ses_A 344 ---------RETHSCSAL-LDWQ-ARRANLRYRDPEGRVRY--AYTLNNT 380 (421)
T ss_dssp ---------EEEEEEEEE-ETHH-HHHHTCEEECTTSCEEE--CEEEEEE
T ss_pred ---------hheeecccc-chhh-hhhhcCEeECCCCCEEE--EEecCCc
Confidence 123899999 9999 99999999999987654 4688864
No 14
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=2.8e-42 Score=383.94 Aligned_cols=239 Identities=15% Similarity=0.247 Sum_probs=201.4
Q ss_pred HHhhhhHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCccccc
Q psy10609 431 EAAKRDHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHY 506 (715)
Q Consensus 431 e~~~rdH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~ 506 (715)
.++++||++||++++||+|++ .|+|+++|+|.|++|+++|++++++.+.+.||++|.||.|.+.++|.+||||++|
T Consensus 148 ~~~~~dH~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f 227 (485)
T 3qne_A 148 APAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQF 227 (485)
T ss_dssp CBCCSCHHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHH
T ss_pred CCCccCHHHHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCcccc
Confidence 457899999999999999985 3789999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEeecCceEEEecCChHHHHHHHHhhhcc--cCCCCeEEEEeccCcccCCCC---CCCCcceeeeEeEeeEEEEe
Q psy10609 507 SENMFSFDVENETYALKPMNCPGHCLIFDHRVRS--WRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFC 581 (715)
Q Consensus 507 ~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s--~~~LPlrl~~~g~~FR~E~~~---~l~GL~R~REFtq~d~~if~ 581 (715)
.++||.+.+.+++++|+||+|.+++.++++++.+ |++||+|++++|+|||+|+++ .++||+|+|||+|+|+|+||
T Consensus 228 ~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~ 307 (485)
T 3qne_A 228 DEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLT 307 (485)
T ss_dssp TTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEE
T ss_pred ccceEEEeCCCCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEe
Confidence 9999999886778999999999999999998887 999999999999999999986 47899999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCC-----CCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc
Q psy10609 582 TVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEK-----YLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP 656 (715)
Q Consensus 582 ~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek-----~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp 656 (715)
+++++++++.+|++++.++|+.|||+|++.....++- ...|.|.| .|+.+.|
T Consensus 308 ~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w--------------------~P~~~~~--- 364 (485)
T 3qne_A 308 EPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAW--------------------FPFQQEY--- 364 (485)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEE--------------------ETTTTEE---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEe--------------------ccCCCce---
Confidence 9999999999999999999999999999865432210 01122333 2333333
Q ss_pred eeeEEeecCCCCc-cccccceeccCcccccCcEEEcC---CCceecccccccccC
Q psy10609 657 KIDITITDALKRP-HQCATIQLDFQLPIRFNLAYVKN---VRAQTHELPRTLSDI 707 (715)
Q Consensus 657 kid~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~---dg~~~~~~~~~~~~~ 707 (715)
++ .+||.+ .||| ++|++|+|.++ +|+.+ +++|||+-
T Consensus 365 -----------~Eiss~Snc-~dyq-Arr~~iry~~~~~~~~~~~--~vhtlNgt 404 (485)
T 3qne_A 365 -----------KELVSCSNC-TDYQ-SRNLEIRCGIKQQNQQEKK--YVHCLNST 404 (485)
T ss_dssp -----------EEEEEEEEC-TTHH-HHHTTCEECC------CCC--BCEEEEEE
T ss_pred -----------eEEEEecCC-cCcc-ccccceEEecccccCCCce--eeEEEecc
Confidence 22 556655 6999 99999999987 45443 46999864
No 15
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=377.26 Aligned_cols=243 Identities=20% Similarity=0.332 Sum_probs=214.7
Q ss_pred cccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCccc
Q psy10609 413 GISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 492 (715)
Q Consensus 413 G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~ 492 (715)
|...+...++.+|. .+|+++++|+++. .++|+++|+|.|+.++++|++++++.+.++||++|.||.|+
T Consensus 22 ~~~~~~~~~f~~wy-----------~~l~~~~~lid~~-~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~ 89 (519)
T 4hvc_A 22 GLEAKKEENLADWY-----------SQVITKSEMIEYH-DISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFV 89 (519)
T ss_dssp -CCSCTTTCHHHHH-----------HHHHHHTTCEEEC-SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEE
T ss_pred cCccCcccCchHHH-----------HHHHHHCCCeEec-CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccc
Confidence 55555566777776 4678899999983 36899999999999999999999999999999999999999
Q ss_pred chhhhhh-hCcccccCCCceEEeecC-----ceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCc
Q psy10609 493 NVKLWQT-SGHWAHYSENMFSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 566 (715)
Q Consensus 493 ~~el~~~-sG~~~~~~~emy~~~d~~-----~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL 566 (715)
+.++|.+ +||++.|.++||.+.+.+ +.++||||+|++++.+|+++++||++||+|++|+|+|||+|.++. +||
T Consensus 90 ~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~-~Gl 168 (519)
T 4hvc_A 90 SQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHP-QPF 168 (519)
T ss_dssp EHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCC-BTT
T ss_pred cHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCC-CCC
Confidence 9999996 899999999999997653 369999999999999999999999999999999999999997776 899
Q ss_pred ceeeeEeEeeEEE-EeCchhHHHHHHHHHHHHHHHHHHc-CcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy10609 567 TRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 644 (715)
Q Consensus 567 ~R~REFtq~d~~i-f~~~eqa~~E~~~~l~~~~~il~~L-Gl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~ 644 (715)
+|+|||+|+|+|+ ||+++++++|+..+++++.++|+.| ||||++..++++++++|+.+.|+
T Consensus 169 ~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~----------------- 231 (519)
T 4hvc_A 169 LRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTT----------------- 231 (519)
T ss_dssp TBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEE-----------------
T ss_pred cceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhhee-----------------
Confidence 9999999999998 8888999999999999999999997 99998888888888888776541
Q ss_pred cccCCCCccccceeeEEeecCCCCccccccc-eeccCcccccCcEEEcC--CCceecc
Q psy10609 645 TENPGDGAFYGPKIDITITDALKRPHQCATI-QLDFQLPIRFNLAYVKN--VRAQTHE 699 (715)
Q Consensus 645 ~~~~g~~afYgpkid~~~~D~~gr~~q~~Ti-QlDf~~~~rf~l~Y~~~--dg~~~~~ 699 (715)
+| .+.|+.||.||+||+ |||+++|+||+++|.|+ +|+++++
T Consensus 232 -------------iE-a~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~v 275 (519)
T 4hvc_A 232 -------------IE-AFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFA 275 (519)
T ss_dssp -------------EE-EEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEEC
T ss_pred -------------ee-eeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEE
Confidence 22 134789999999999 79999999999999997 5777654
No 16
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=2.5e-39 Score=366.32 Aligned_cols=242 Identities=17% Similarity=0.241 Sum_probs=208.9
Q ss_pred HHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hC
Q psy10609 423 KEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SG 501 (715)
Q Consensus 423 ~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG 501 (715)
+.|+++.+++. ++|.+|+++++|++++...+|+++|+|.|++++++|++++++.+.+ ||++|.||.|++.++|.+ +|
T Consensus 31 ~~~~~~~~~f~-~~~~~l~~~~glid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG 108 (501)
T 1nj1_A 31 RYHGEKMTEFS-EWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAI 108 (501)
T ss_dssp --------CHH-HHHHHHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHH
T ss_pred ccccCCCCCcc-HhHHHHHHHCCCccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccC
Confidence 77888776665 9999999999999996667999999999999999999999999999 999999999999999987 99
Q ss_pred cccccCCCceEEeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEe-Ee
Q psy10609 502 HWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQ-QD 575 (715)
Q Consensus 502 ~~~~~~~emy~~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFt-q~ 575 (715)
|++.|.++||.+.++ ++.++||||+|++++.+|++++.|+++||+|++|+|+|||+|+++ ++||+|+|||+ |+
T Consensus 109 ~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~-~rGl~R~REF~~q~ 187 (501)
T 1nj1_A 109 HVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKH-TRPLIRVREITTFK 187 (501)
T ss_dssp HHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEE
T ss_pred CcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCC-CCCCceeEEEeeee
Confidence 999999999999875 578999999999999999999999999999999999999999993 26999999999 99
Q ss_pred eEEEE-eCchhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccc
Q psy10609 576 DAHIF-CTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFY 654 (715)
Q Consensus 576 d~~if-~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afY 654 (715)
|+|+| ++++++++|+.++++++.++|+.|||+|++.++++++++.|....
T Consensus 188 e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~a~~~----------------------------- 238 (501)
T 1nj1_A 188 EAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYT----------------------------- 238 (501)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTCSEE-----------------------------
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchhhcCCcccc-----------------------------
Confidence 99975 566899999999999999999999999998887655544433222
Q ss_pred cceeeEEeecCCCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 655 GPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 655 gpkid~~~~D~~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
..||+.+.| |+.+++||++ ++.++++||+++|.+++|+.++|
T Consensus 239 -~die~~l~~--g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~ 281 (501)
T 1nj1_A 239 -VAFDTLMPD--GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYV 281 (501)
T ss_dssp -EEEEEECTT--SCEEEEEEEEEEETHHHHHHTCEEECTTSCEEEC
T ss_pred -eEEEEEcCC--CCEEEEEEEEeccccchhhcCeEEECCCCCEEee
Confidence 236666665 8899999998 89889999999999999987665
No 17
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=1.5e-38 Score=358.11 Aligned_cols=231 Identities=18% Similarity=0.273 Sum_probs=200.8
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFS 512 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~ 512 (715)
...|.+|+++.+|+++.+ ++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||.
T Consensus 15 ~~~~~~l~~~~~li~~~~-~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~ 93 (477)
T 1hc7_A 15 SEWYLEVIQKAELADYGP-VRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAV 93 (477)
T ss_dssp HHHHHHHHHHTTSEEECS-STTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEE
T ss_pred hHHHHHHHHHCCCeeecC-CCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEE
Confidence 567999999999998865 58999999999999999999999999999999999999999999987 9999999999999
Q ss_pred Eeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEe-CchhH
Q psy10609 513 FDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC-TVEQI 586 (715)
Q Consensus 513 ~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~-~~eqa 586 (715)
+.++ ++.++||||+|++++.+|++++.||++||+|++|+|+|||+|.++ +||+|+|||+|+|+|+|+ +++++
T Consensus 94 ~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~--rGl~R~REF~q~d~~~~~~~~~~a 171 (477)
T 1hc7_A 94 VTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT--RPFLRTSEFLWQEGHTAHATREEA 171 (477)
T ss_dssp EEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC--BTTTBCSEEEEEEEEEEESSHHHH
T ss_pred EECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCC--CCcceeEEEEEccEEEEeCCHHHH
Confidence 9876 578999999999999999999999999999999999999999987 499999999999999955 56799
Q ss_pred HHHHHHHHHHHHHHH-HHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC
Q psy10609 587 GDEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 665 (715)
Q Consensus 587 ~~E~~~~l~~~~~il-~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~ 665 (715)
++|+..+++++.++| +.|||+|++.++++.+++.|....| .+|+.+.|
T Consensus 172 d~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~------------------------------~ie~~~~d- 220 (477)
T 1hc7_A 172 EEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTT------------------------------TIEALMKD- 220 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEE------------------------------EEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccce------------------------------EEEEEcCC-
Confidence 999999999999999 8999999988887766665543322 35555544
Q ss_pred CCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 666 LKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 666 ~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
||.+|+||+| +++++|++|+++|.+.+|+.++|
T Consensus 221 -gr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~ 254 (477)
T 1hc7_A 221 -GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYV 254 (477)
T ss_dssp -SCEEEEEEEEEEETHHHHHTTCEEECTTSCEEEC
T ss_pred -CcEEEEeeeEEcccccccccCeEEECCCCCEEee
Confidence 7889999999 99999999999999999997665
No 18
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=4.5e-38 Score=352.80 Aligned_cols=233 Identities=17% Similarity=0.252 Sum_probs=207.2
Q ss_pred hhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceE
Q psy10609 434 KRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFS 512 (715)
Q Consensus 434 ~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~ 512 (715)
.+.|.+|+.+.+|++++...+|+++|+|.|+.++++|++++++.+.++||++|.||.|++.++|.+ +||++.|.++||.
T Consensus 8 ~~~~~~l~~~~~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~ 87 (459)
T 1nj8_A 8 SEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYW 87 (459)
T ss_dssp HHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEE
T ss_pred cHhHHHHHHhCCCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEE
Confidence 567999999999999865579999999999999999999999999999999999999999999975 9999999999999
Q ss_pred Eeec-----CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEe-EeeEEEEeC-chh
Q psy10609 513 FDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQ-QDDAHIFCT-VEQ 585 (715)
Q Consensus 513 ~~d~-----~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFt-q~d~~if~~-~eq 585 (715)
+.++ ++.++||||+|++++.+|++++.|+++||+|++|+|+|||+|+++ .+||+|+|||+ |+|+|+|+. +++
T Consensus 88 ~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~-~rGl~R~REF~qq~d~~~~~~~~~~ 166 (459)
T 1nj8_A 88 VTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEE 166 (459)
T ss_dssp EEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHH
T ss_pred EeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCC-CCCceEeeeeeccCcEEEEECCHHH
Confidence 9886 578999999999999999999999999999999999999999993 26999999999 999998655 579
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceeeEEeecC
Q psy10609 586 IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 665 (715)
Q Consensus 586 a~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid~~~~D~ 665 (715)
+++|+.+++.++.++|+.|||+|++.++++.+++.|... ...||+.+.|
T Consensus 167 a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~------------------------------~~~ie~~~~d- 215 (459)
T 1nj8_A 167 AENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEY------------------------------TMAFDTIFPD- 215 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSE------------------------------EEEEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHHHCCCceEEeecCchhhcCCccc------------------------------ceeEEEEcCC-
Confidence 999999999999999999999988887765555433322 2235555544
Q ss_pred CCCccccccce-eccCcccccCcEEEcCCCceecc
Q psy10609 666 LKRPHQCATIQ-LDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 666 ~gr~~q~~TiQ-lDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
|+.+++||+| |++++|++|+++|.|++|+.+++
T Consensus 216 -g~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v 249 (459)
T 1nj8_A 216 -GRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYA 249 (459)
T ss_dssp -SCEEEEEEEEEEETHHHHHTTCEEECTTSSEEEC
T ss_pred -CcEEEEEEEeecccccccccCeEEECCCCCEeee
Confidence 8999999998 99999999999999999987665
No 19
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=100.00 E-value=1.3e-37 Score=317.77 Aligned_cols=219 Identities=32% Similarity=0.576 Sum_probs=190.8
Q ss_pred eEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhcCc
Q psy10609 38 NQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNGV 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (715)
++|++|||+++.++. ++|+.|+|+.++.++++.+++|+|||+++||++||+.+|.|+++
T Consensus 2 i~I~~p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~i-------------------- 60 (224)
T 1tke_A 2 PVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII-------------------- 60 (224)
T ss_dssp CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEE--------------------
T ss_pred eEEEeCCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEE--------------------
Confidence 689999999999888 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceeecCCcCCceEEEeecCchhHHHHHHHHHH
Q psy10609 118 LWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGG-CLCYGPPIENGFYYDMYLDGEAQMERITLWDK 196 (715)
Q Consensus 118 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (715)
++++++|.++||||++|||++|++++||+ .+++||++++|||||+..+..
T Consensus 61 ------------------t~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~----------- 111 (224)
T 1tke_A 61 ------------------TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT----------- 111 (224)
T ss_dssp ------------------CTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSC-----------
T ss_pred ------------------ecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeCCCC-----------
Confidence 99999999999999999999999999986 789999999999999976533
Q ss_pred HHHHHHHHHHhcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 197 LKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 197 l~~~~~~~~~~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
++.
T Consensus 112 -----------------------------------------------------------------------------~t~ 114 (224)
T 1tke_A 112 -----------------------------------------------------------------------------LTQ 114 (224)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred -----------------------------------------------------------------------------CCH
Confidence 566
Q ss_pred CChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--ChhHHHHHhh-ccCCCcEEEEeeCCcccccCCccccCcChhh
Q psy10609 277 LDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKY--NPFKLRILKE-KVNTPTTTAYRCGPLIDLCRGPHVRHTGKIK 353 (715)
Q Consensus 277 ~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~--~~~m~eLI~e-~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~e 353 (715)
+++..++..|.++|+++.|+.+..++.++|.++|+. ++++.++++. ......+++|+||+|+|+|.|||+++|+...
T Consensus 115 edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~ 194 (224)
T 1tke_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCH 194 (224)
T ss_dssp HHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCEEEECCCcCCCcCcccc
Confidence 788889999999999999999999999999999975 5577888875 3234567778888888888888888888777
Q ss_pred HHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 354 AFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 354 A~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+|+|.+ +.+.||+|+.++.+|||+||.+||
T Consensus 195 ~fkl~~----------------------------------~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 195 HFKLMK----------------------------------TAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp CEEEEE----------------------------------EEEEEGGGCTTSCEEEEEEEEECC
T ss_pred eEEEEE----------------------------------ecceeEcCCCCCceeEEEEEeccC
Confidence 777776 344578888888888888888775
No 20
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=1.1e-36 Score=350.68 Aligned_cols=182 Identities=19% Similarity=0.370 Sum_probs=171.2
Q ss_pred HHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCC
Q psy10609 429 QEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE 508 (715)
Q Consensus 429 ~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~ 508 (715)
+++++++||+.|++. ++++ +.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.|.+
T Consensus 15 ~~~~~~~~h~~l~~~-g~~~--~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~ 91 (572)
T 2j3l_A 15 PNDAEVLSHQILLRA-GYIR--QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGP 91 (572)
T ss_dssp CTTCCSHHHHHHHHT-TSEE--EEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCT
T ss_pred CcccCCcCHHHHHhC-CCcc--ccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccch
Confidence 568899999999997 5544 4579999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhH
Q psy10609 509 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQI 586 (715)
Q Consensus 509 emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa 586 (715)
+||.+.+. ++.++||||+|++++.++++++.||++||+|++|+|+|||+|++|+ +||+|+|||+|+|+|+||.+ +++
T Consensus 92 ~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~-~Gl~R~ReF~q~d~~~f~~~~~~~ 170 (572)
T 2j3l_A 92 NLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSR-SGLLRGREFIMKDGYSFHADEASL 170 (572)
T ss_dssp TSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCC-TGGGSCSEEEEEEEEEEESSHHHH
T ss_pred heEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcc-cCccccceeEEeeeEEEcCCHHHH
Confidence 99999875 7899999999999999999999999999999999999999999974 89999999999999999995 699
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEEcc
Q psy10609 587 GDEIVGALDFLRNVYSIFGFTFNLRLST 614 (715)
Q Consensus 587 ~~E~~~~l~~~~~il~~LGl~~~v~l~~ 614 (715)
++|+..+++++.++|+.|||+|++.+++
T Consensus 171 ~~e~~~~~~~~~~~~~~lgl~~~~~~~~ 198 (572)
T 2j3l_A 171 DQSYRDYEKAYSRIFERCGLEFRAIIGD 198 (572)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 9999999999999999999999998865
No 21
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=3.2e-37 Score=346.15 Aligned_cols=284 Identities=17% Similarity=0.162 Sum_probs=223.0
Q ss_pred CCcchhhhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHH
Q psy10609 401 GKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRK 480 (715)
Q Consensus 401 G~lk~f~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~ 480 (715)
|......++|.+-.+.|+-.+ .+++++.++|+.|+++ ++ +.+.++|+++|+|.|++++++|++++++.+.+
T Consensus 13 ~~~~~~~~~~~s~~~~~t~~~------~~~~a~~~~h~ll~r~-g~--i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~ 83 (458)
T 2i4l_A 13 GLVPRGSHMRLSRFFLPILKE------NPKEAEIVSHRLMLRA-GM--LRQEAAGIYAWLPLGHRVLKKIEQIVREEQNR 83 (458)
T ss_dssp -----CCEEEGGGSCCCCCSS------CCTTCCSHHHHHHHHT-TC--EEEEETTEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccccccchhhhhhhhhcc------ChhhcCcchHHHHhhc-CC--eeccCCcceEECCCHHHHHHHHHHHHHHHHHH
Confidence 557777788888888886543 3678899999999998 44 44557899999999999999999999999999
Q ss_pred cCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCC
Q psy10609 481 RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNEL 559 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~ 559 (715)
+||++|.||+|++.++|+++|||+.+.++||++.+. ++.++||||+|+.++.+++..+.+|++||+|+||+|+|||+|.
T Consensus 84 ~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~ 163 (458)
T 2i4l_A 84 AGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQ 163 (458)
T ss_dssp TTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCS
T ss_pred cCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCC
Confidence 999999999999999999999999999999999886 7899999999999999999999999999999999999999996
Q ss_pred CCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCC------------CCCCCH---
Q psy10609 560 SGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE------------KYLGEL--- 623 (715)
Q Consensus 560 ~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~e------------k~~gd~--- 623 (715)
+++ +||+|+|||+|.|+|+||.+ +++++|+..+++++.++|++|||+|++.+++++. ...|.+
T Consensus 164 ~p~-~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~ 242 (458)
T 2i4l_A 164 RPR-FGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVY 242 (458)
T ss_dssp SCB-TGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEE
T ss_pred CCC-CCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEE
Confidence 665 79999999999999999965 6999999999999999999999999998876631 012221
Q ss_pred -------HHHHHHHH----HHHHHHHhcC-CC-ccc--cCCCCc---cccceeeEEeecCCCCccccccceeccCccccc
Q psy10609 624 -------EVWNKAEK----QLEASLNSFG-EP-WTE--NPGDGA---FYGPKIDITITDALKRPHQCATIQLDFQLPIRF 685 (715)
Q Consensus 624 -------e~w~~a~~----~L~~~L~~~g-~~-~~~--~~g~~a---fYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf 685 (715)
+.|+.++. .++++++..+ +. ... ..|+.+ +|++++++.--...|..+++||. .|++|
T Consensus 243 ~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~-----~s~~~ 317 (458)
T 2i4l_A 243 IDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTK-----YSDSM 317 (458)
T ss_dssp EEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETH-----HHHHT
T ss_pred ecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEeccc-----ccccC
Confidence 11211110 1223332221 10 000 234443 78888876554456777777654 69999
Q ss_pred CcEEEcCCCceecc
Q psy10609 686 NLAYVKNVRAQTHE 699 (715)
Q Consensus 686 ~l~Y~~~dg~~~~~ 699 (715)
+.+|.+.+|+...|
T Consensus 318 g~ry~~~~G~~~p~ 331 (458)
T 2i4l_A 318 KANVTGPDGTDAPI 331 (458)
T ss_dssp TCEEECTTSCEEEC
T ss_pred CcEEECCCCCEece
Confidence 99999999887443
No 22
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.98 E-value=1.4e-33 Score=319.54 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=200.8
Q ss_pred hHHHHhhhcCcceecc----CCCeeEEeCcccHHHHHHHHHHHHHHHH--HcCcEEEecCcccchhhhhhhCcccccCCC
Q psy10609 436 DHRKIGREQELFFFHE----LSPGSCFFQPKGAFIYNTLVEFIRSEYR--KRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 509 (715)
Q Consensus 436 dH~~Lg~~l~Lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~~~~~--~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e 509 (715)
.|.+|+++.+++.... ..+|+++|+|.|++++++|+++|++.+. +.||++|.||+|.+.++|++||||++|.++
T Consensus 7 ~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~ 86 (505)
T 1ati_A 7 ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADP 86 (505)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEE
T ss_pred HHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCcc
Confidence 4888999999876543 1389999999999999999999999998 999999999999999999999999999998
Q ss_pred ceEE-------------------------------------------e-----------------ec-------------
Q psy10609 510 MFSF-------------------------------------------D-----------------VE------------- 516 (715)
Q Consensus 510 my~~-------------------------------------------~-----------------d~------------- 516 (715)
||++ . +.
T Consensus 87 m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fn 166 (505)
T 1ati_A 87 MVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFN 166 (505)
T ss_dssp EEEC--------------------------------------------------------------------CCCCEEEE
T ss_pred ceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhh
Confidence 8872 1 10
Q ss_pred -------------CceEEEecCChHHHHHHHHhhhccc-CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeC
Q psy10609 517 -------------NETYALKPMNCPGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 517 -------------~~~l~LRPt~e~~~~~~~~~~~~s~-~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~ 582 (715)
++.++|||++|++++..|++.+.|| ++||+|++|+|+|||+|.+++ +||+|+|||+|.|+|+||+
T Consensus 167 lmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr-~GL~R~REF~q~d~~~f~~ 245 (505)
T 1ati_A 167 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR-NFIFRVREFEQMEIEYFVR 245 (505)
T ss_dssp CBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCC-TGGGSCSEEEEEEEEEEEC
T ss_pred hhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCC-CCCCcccceEEeeEEEEEC
Confidence 2467999999999999999899999 899999999999999998775 7999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC-CCCC-CCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccceee
Q psy10609 583 VEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP-EKYL-GELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKID 659 (715)
Q Consensus 583 ~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~-ek~~-gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgpkid 659 (715)
++++.+++.+++.++.++|++|||+ +.+.++.++ +.+. ++.++|+. +++. ++...+..|+.|++..+
T Consensus 246 ~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~------E~~~----p~~~~e~~g~~~~~d~~ 315 (505)
T 1ati_A 246 PGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDI------LYRF----PHGSLELEGIAQRTDFD 315 (505)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEE------EEEE----TTEEEEEEEEEECTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhH------Hhhc----CCCCccchhhhccccee
Confidence 9999999999999999999999998 556666654 4443 56666631 1111 11111223566777655
Q ss_pred EEeecC-CCCccccccceeccCcccccCcEEEcCCCcee
Q psy10609 660 ITITDA-LKRPHQCATIQLDFQLPIRFNLAYVKNVRAQT 697 (715)
Q Consensus 660 ~~~~D~-~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~ 697 (715)
+...++ .|+.+ .|+|+|++.++||+++|++++|+.+
T Consensus 316 L~~~~~~~~~~~--~~~~~~~n~~~~~~~~y~d~~g~~~ 352 (505)
T 1ati_A 316 LGSHTKDQEALG--ITARVLRNEHSTQRLAYRDPETGKW 352 (505)
T ss_dssp HHHHCSSTTTTT--CCSCCCCCSCCCSCCCEECSSSCCE
T ss_pred cchhhccccccc--eeeeecccccceeEEEEEcCCCCee
Confidence 332222 34444 4888999999999999999998865
No 23
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.97 E-value=8e-32 Score=302.85 Aligned_cols=233 Identities=21% Similarity=0.275 Sum_probs=193.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cc-ccccCCCceEEeec--CceEEEecCCh
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE--NETYALKPMNC 527 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~-~~~~~~emy~~~d~--~~~l~LRPt~e 527 (715)
.++|+++|+|.|+.+++.|++++++.++++||++|.||+|++.++|.++ || |+.+.++||+|.|. |+.++|||++|
T Consensus 34 ~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t 113 (467)
T 4e51_A 34 GVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENT 113 (467)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSH
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccH
Confidence 3689999999999999999999999999999999999999999999988 98 78889999999874 78999999999
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc
Q psy10609 528 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 528 ~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl 606 (715)
++++++++....++ ++|+|+|++|+|||+|+++. | |+|||+|+|+|+||.++ .+++| ++.++.++|+.|||
T Consensus 114 ~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~--g--R~ReF~Q~d~ei~g~~~~~adaE---vi~l~~~~l~~lGl 185 (467)
T 4e51_A 114 AAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQR--G--RYRQFHQVGVEALGFAGPDADAE---IVMMCQRLWEDLGL 185 (467)
T ss_dssp HHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHHHH---HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHccccc-CCCEEEEEEccEEccCCCCC--C--CcCceEEEEEEEEeCCChHHHHH---HHHHHHHHHHHcCC
Confidence 99999999888888 69999999999999999885 7 99999999999999986 45544 78999999999999
Q ss_pred E-EEEEEccCCC------------CCCC----------------------------CHHHHH--------------HHHH
Q psy10609 607 T-FNLRLSTRPE------------KYLG----------------------------ELEVWN--------------KAEK 631 (715)
Q Consensus 607 ~-~~v~l~~~~e------------k~~g----------------------------d~e~w~--------------~a~~ 631 (715)
+ |++.+++++. ++++ ..+.|. ...+
T Consensus 186 ~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~ 265 (467)
T 4e51_A 186 TGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFE 265 (467)
T ss_dssp CCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHH
T ss_pred CceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHH
Confidence 5 9999998641 0110 001111 2236
Q ss_pred HHHHHHHhcCCCccccCC---CCccccceeeEEeecCCCCccccccceeccCcccccCcEEEcCCCceeccc
Q psy10609 632 QLEASLNSFGEPWTENPG---DGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHEL 700 (715)
Q Consensus 632 ~L~~~L~~~g~~~~~~~g---~~afYgpkid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~ 700 (715)
.|.++|+.+|++|.++++ +.+||++++...+.|+.|+. +||+ .+-|||. |++..|.+..|.
T Consensus 266 ~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~---~tI~----~GGRYD~-Lv~~~g~~~~Pa 329 (467)
T 4e51_A 266 GLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQ---GTVA----AGGRYDP-LIEQLGGKPTAA 329 (467)
T ss_dssp HHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC-------CEEE----EEEECTH-HHHHTTSSCCCE
T ss_pred HHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCc---ceec----CCCcHHH-HHHHhCCCCCCc
Confidence 788889999999999998 78999999998899988876 6776 5899998 888888766664
No 24
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.97 E-value=5.8e-32 Score=304.87 Aligned_cols=226 Identities=17% Similarity=0.208 Sum_probs=181.8
Q ss_pred HHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHH-HHHcCcEEEecCcccchhhhhhhCcccccCCCceEEe--
Q psy10609 438 RKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSE-YRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-- 514 (715)
Q Consensus 438 ~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~-~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~-- 514 (715)
.++..+.+++.. -.++|+++|+|.|++++++|++++++. +.+.||++|.||.|++.++|++|||++.|.++||.+.
T Consensus 206 ~~ll~raG~i~~-~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~ 284 (522)
T 2cja_A 206 TQAMMKEGWLKR-GSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPP 284 (522)
T ss_dssp HHHHHHTTSEEE-CSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECB
T ss_pred HHHHHHCCCeee-eCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecC
Confidence 567778888753 247999999999999999999999975 8999999999999999999999999999999999984
Q ss_pred ---e--------------------------cCceEEEecCChHHHHHHHHhhhcccCCCCeEEEE-eccCcccCCCCCCC
Q psy10609 515 ---V--------------------------ENETYALKPMNCPGHCLIFDHRVRSWRELPLRMAD-FGVLHRNELSGALT 564 (715)
Q Consensus 515 ---d--------------------------~~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~-~g~~FR~E~~~~l~ 564 (715)
+ +++.++||||+|++++.+|++++.|+++||+|++| +|+|||+| ++.++
T Consensus 285 ~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~ 363 (522)
T 2cja_A 285 QTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIH 363 (522)
T ss_dssp SCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCC
T ss_pred CccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCC
Confidence 2 25789999999999999999999999999999999 99999999 66568
Q ss_pred CcceeeeEeEeeEEEEeCchhHHHHHHHHH-HHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy10609 565 GLTRVRRFQQDDAHIFCTVEQIGDEIVGAL-DFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEP 643 (715)
Q Consensus 565 GL~R~REFtq~d~~if~~~eqa~~E~~~~l-~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L~~~g~~ 643 (715)
||+|+|||+|+|+|+||+++++.+++.+++ ..+..+++.|||+ ++.+.. +.+.+.++-. ..+ .
T Consensus 364 GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v~~~~--D~f~~a~~G~------~G~-~------ 427 (522)
T 2cja_A 364 GIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WRKARV--TPWFMAQEGL------LGL-A------ 427 (522)
T ss_dssp CTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EEEEEC-----------------------------
T ss_pred CCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EEeecc--CCcccccccc------ccc-h------
Confidence 999999999999999999999999999999 8999999999999 555421 2222111000 000 0
Q ss_pred ccccCCCCccc-cceeeEEeec----CCCCccccccce--eccCcccccCcEEE
Q psy10609 644 WTENPGDGAFY-GPKIDITITD----ALKRPHQCATIQ--LDFQLPIRFNLAYV 690 (715)
Q Consensus 644 ~~~~~g~~afY-gpkid~~~~D----~~gr~~q~~TiQ--lDf~~~~rf~l~Y~ 690 (715)
.++ ..+.|+.+.- +.|+..+|++++ .||| ++||+++|.
T Consensus 428 --------q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~q-arr~~Ir~~ 472 (522)
T 2cja_A 428 --------EENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKY-PKGFNVKLQ 472 (522)
T ss_dssp ----------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHH-HHHHTCEET
T ss_pred --------hccccceEEEEEecccccCCCcEEEEeeechhhhhc-ccccceEcC
Confidence 011 1345666543 356667788776 4777 999999985
No 25
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.96 E-value=1.9e-30 Score=287.58 Aligned_cols=232 Identities=17% Similarity=0.286 Sum_probs=174.9
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh--CcccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s--G~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++ ||++.+.++||++.|. |+.++||||+|+
T Consensus 4 ~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~ 83 (420)
T 1qe0_A 4 IPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTA 83 (420)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHH
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChH
Confidence 4689999999999999999999999999999999999999999999988 8999999999999875 789999999999
Q ss_pred HHHHHHHhhhccc-CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc
Q psy10609 529 GHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 529 ~~~~~~~~~~~s~-~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl 606 (715)
+++++++++..++ ++||+|+||+|+|||+|+++. | |+|||+|.|+|+||.++ .+++| ++.++.++|+.|||
T Consensus 84 ~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~--g--R~reF~q~~~e~~~~~~~~~d~e---~i~~~~~~l~~lgl 156 (420)
T 1qe0_A 84 AVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK--G--RYRQFNQFGVEAIGAENPSVDAE---VLAMVMHIYQSFGL 156 (420)
T ss_dssp HHHHHHHHTTGGGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccccCCCCeEEEEecCEeecCCCcC--C--CcccEEEeeEEEECCCCchhHHH---HHHHHHHHHHHcCC
Confidence 9999999888888 899999999999999997764 7 99999999999999986 45544 78899999999999
Q ss_pred E-EEEEEccCC------------CCCC----------------------------CCHHHHHHH--------------HH
Q psy10609 607 T-FNLRLSTRP------------EKYL----------------------------GELEVWNKA--------------EK 631 (715)
Q Consensus 607 ~-~~v~l~~~~------------ek~~----------------------------gd~e~w~~a--------------~~ 631 (715)
+ |++.+++.+ ++++ ++.+.|..+ .+
T Consensus 157 ~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~ 236 (420)
T 1qe0_A 157 KHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYE 236 (420)
T ss_dssp CCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHH
T ss_pred CceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHH
Confidence 8 999998742 0111 122334322 15
Q ss_pred HHHHHHHhcCCCccccCC---CCccccce-eeEEeecCC---CCccccccceeccCcccccCcEEEcCCCceecc
Q psy10609 632 QLEASLNSFGEPWTENPG---DGAFYGPK-IDITITDAL---KRPHQCATIQLDFQLPIRFNLAYVKNVRAQTHE 699 (715)
Q Consensus 632 ~L~~~L~~~g~~~~~~~g---~~afYgpk-id~~~~D~~---gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~ 699 (715)
.|.++|+..|+++.++++ ...||+++ +|+ +.++. |+. +|++ .+.|||. +.+..|.+..|
T Consensus 237 ~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~-~~~~~~~~g~~---~~i~----~GgRYd~-l~~~~g~~~~P 302 (420)
T 1qe0_A 237 QVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFEL-MMDNPNYDGAI---TTLC----GGGRYNG-LLELLDGPSET 302 (420)
T ss_dssp HHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEE-EEECTTSTTSE---EEEE----EEEEEES-HHHHTTCCCCE
T ss_pred HHHHHHHHcCCeEEECcccccchhhhcCeEEEE-EEcCCCCCCCc---Cccc----cCccHHH-HHHHhCCCCCC
Confidence 677788888999988888 56899665 477 66666 543 4553 5777777 67777755555
No 26
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.96 E-value=2.1e-30 Score=275.75 Aligned_cols=217 Identities=15% Similarity=0.119 Sum_probs=174.0
Q ss_pred cCC-CeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee--------------
Q psy10609 451 ELS-PGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-------------- 515 (715)
Q Consensus 451 ~~~-~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-------------- 515 (715)
+.+ +|++.+.+.+++|+++|++++++ ..+.||++|.||.|.+.++|++||||++|.++||.+..
T Consensus 50 ~~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~ 128 (346)
T 3mf2_A 50 SMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSR 128 (346)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHH
T ss_pred ccCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhh
Confidence 554 89999999999999999999999 98999999999999999999999999999999999743
Q ss_pred -----------cCceEEEecCChHHHHHHHHhh-hcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc
Q psy10609 516 -----------ENETYALKPMNCPGHCLIFDHR-VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 583 (715)
Q Consensus 516 -----------~~~~l~LRPt~e~~~~~~~~~~-~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~ 583 (715)
.+.+|+|+||+|++++.+++++ +++ +.|+|+..+|+|||+|++ +||+|+|||+|+|+++||+|
T Consensus 129 ~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tp 203 (346)
T 3mf2_A 129 FDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTP 203 (346)
T ss_dssp HHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESH
T ss_pred hccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCH
Confidence 1347999999999999999975 555 459999999999999994 59999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcEEEEEEccCCCCCCCCHHHHHHHHHHHHHHH-HhcCCCccc---cCCCCccccceee
Q psy10609 584 EQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASL-NSFGEPWTE---NPGDGAFYGPKID 659 (715)
Q Consensus 584 eqa~~E~~~~l~~~~~il~~LGl~~~v~l~~~~ek~~gd~e~w~~a~~~L~~~L-~~~g~~~~~---~~g~~afYgpkid 659 (715)
+|+.++++++++.+.++++.|||+|++.+++ +-++++.. .+.... ....++|++ .|+++.|
T Consensus 204 Eqs~~e~e~l~~~ae~il~~LgLpyrv~~~~--D~~f~~~G-------~l~~~~Q~~~~~kyDlevw~p~~~~y------ 268 (346)
T 3mf2_A 204 DDVSDFRERWMVRAQAIARDLGLTFRVDYAS--DPFFGRVG-------QMKAVSQKQQQLKFELLIPLRSEEQP------ 268 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEECC--CCCCHHHH-------HHHHHHHHHTTCEEEEEECSSCSSSC------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEcc--CCCcCccc-------chhhhccccccceEEEEEEcCCCCCe------
Confidence 9999999999999999999999999998763 23333211 111100 011223332 3444444
Q ss_pred EEeecCCCCc-cccccceeccCcccccCcEEEcCCCceeccccccc
Q psy10609 660 ITITDALKRP-HQCATIQLDFQLPIRFNLAYVKNVRAQTHELPRTL 704 (715)
Q Consensus 660 ~~~~D~~gr~-~q~~TiQlDf~~~~rf~l~Y~~~dg~~~~~~~~~~ 704 (715)
++ .+|+.+ .||| ++||+|+|.+ |+ +++|+
T Consensus 269 --------~EisS~Sn~-~dfq-arR~~Ir~~~--~~----~vHT~ 298 (346)
T 3mf2_A 269 --------TACMSFNYH-REHF-GTTWGIQDAN--GE----PAHTG 298 (346)
T ss_dssp --------EEEEEEEEC-TTHH-HHHHTCBCTT--SS----BCEEE
T ss_pred --------eEEEeeecc-cchh-hhhhcceeCC--CC----eEEEc
Confidence 33 566666 7999 9999999963 42 36775
No 27
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.96 E-value=5.4e-30 Score=299.01 Aligned_cols=263 Identities=20% Similarity=0.245 Sum_probs=173.1
Q ss_pred HHHHhhhcCcceecc-C---CCeeEEeCcccHHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCce
Q psy10609 437 HRKIGREQELFFFHE-L---SPGSCFFQPKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF 511 (715)
Q Consensus 437 H~~Lg~~l~Lf~~~~-~---~~G~~~~lP~G~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy 511 (715)
-..|+++.+++.... + .+|+++|+|.|+.++++|+++|++.+. ..||++|.||+|.+.++|++||||++|.+.||
T Consensus 70 ~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~ 149 (693)
T 2zt5_A 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMV 149 (693)
T ss_dssp HHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEE
T ss_pred HHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccce
Confidence 446777777665442 1 389999999999999999999999997 56999999999999999999999999988776
Q ss_pred EEee----------------------------------------------------------------------------
Q psy10609 512 SFDV---------------------------------------------------------------------------- 515 (715)
Q Consensus 512 ~~~d---------------------------------------------------------------------------- 515 (715)
++.+
T Consensus 150 ~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~ 229 (693)
T 2zt5_A 150 KDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFK 229 (693)
T ss_dssp EBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCE
T ss_pred eeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeee
Confidence 4311
Q ss_pred ------cCceEEEecCChHHHHHHHHhhhcc-cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhH--
Q psy10609 516 ------ENETYALKPMNCPGHCLIFDHRVRS-WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI-- 586 (715)
Q Consensus 516 ------~~~~l~LRPt~e~~~~~~~~~~~~s-~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa-- 586 (715)
+++..+|||+++++++..|++.+.+ |++||++++|+|++||||.+++ +||+|+|||+|.|+|+||.|++.
T Consensus 230 t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr-~GLlR~REF~q~d~e~F~~p~~~~~ 308 (693)
T 2zt5_A 230 TFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPR-SGLIRVREFTMAEIEHFVDPSEKDH 308 (693)
T ss_dssp EECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCC-SGGGSCSEEEEEEEEEEECTTCCCC
T ss_pred ccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCC-CCCccceeeEEccceEEeCcchhcc
Confidence 2367899999999999999988877 7899999999999999998876 89999999999999999998754
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHcCcE-EEEEEccC-C-CC-----
Q psy10609 587 ----------------------------------------GDEIVGALDFLRNVYSIFGFT-FNLRLSTR-P-EK----- 618 (715)
Q Consensus 587 ----------------------------------------~~E~~~~l~~~~~il~~LGl~-~~v~l~~~-~-ek----- 618 (715)
.+++..++..+.+++..|||+ ..++++.+ + +.
T Consensus 309 ~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~ 388 (693)
T 2zt5_A 309 PKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYAC 388 (693)
T ss_dssp TTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCS
T ss_pred hhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchh
Confidence 255777899999999999996 44554444 2 22
Q ss_pred ---------CCCCHHHHHH---HHHHHHHHHHhcCCCcc---------------ccCCCCccccceeeE---EeecCCCC
Q psy10609 619 ---------YLGELEVWNK---AEKQLEASLNSFGEPWT---------------ENPGDGAFYGPKIDI---TITDALKR 668 (715)
Q Consensus 619 ---------~~gd~e~w~~---a~~~L~~~L~~~g~~~~---------------~~~g~~afYgpkid~---~~~D~~gr 668 (715)
..|..++|+. +.-.|...++..|.++. +.+++++| ||+++. .+.|.+++
T Consensus 389 ~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L~~ 467 (693)
T 2zt5_A 389 DCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYLAI 467 (693)
T ss_dssp SEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC-------------------------------------
T ss_pred hhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHhhh
Confidence 2344444432 22468888888888766 35788888 999874 68888888
Q ss_pred cccc------------c--cceec---cCccc-ccCcE-EE-cCCCceecccc
Q psy10609 669 PHQC------------A--TIQLD---FQLPI-RFNLA-YV-KNVRAQTHELP 701 (715)
Q Consensus 669 ~~q~------------~--TiQlD---f~~~~-rf~l~-Y~-~~dg~~~~~~~ 701 (715)
.++. | ++++| |+++. ++++. |. ..+|.+..|.+
T Consensus 468 ~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~V 520 (693)
T 2zt5_A 468 CDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNV 520 (693)
T ss_dssp --------------------------------------------CCEEECCEE
T ss_pred hhHHHHHHHHHHHHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCcc
Confidence 7754 3 45556 77764 34443 43 34666666644
No 28
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.94 E-value=3.4e-29 Score=279.95 Aligned_cols=251 Identities=13% Similarity=0.011 Sum_probs=170.5
Q ss_pred hhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcCcceecc-CC------CeeE-EeCcccHHHHHHHHHHHHHHH--HH
Q psy10609 411 VYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHE-LS------PGSC-FFQPKGAFIYNTLVEFIRSEY--RK 480 (715)
Q Consensus 411 ~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~Lf~~~~-~~------~G~~-~~lP~G~~l~~~L~~~i~~~~--~~ 480 (715)
+.|+.||++.+|... ...+.+|+++.+++.... +. +|++ +|+|.|+.|+++|++++++.+ .+
T Consensus 9 ~~~~~~~~~~~~~~~--------~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~ 80 (454)
T 1g5h_A 9 ADGTQQPDAPEHAVA--------REALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFR 80 (454)
T ss_dssp ------------------------CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCChhHHHHH--------HHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhc
Confidence 346668988887431 234778999998876543 21 3766 999999999999999999885 58
Q ss_pred cCcEEEecCcccchhhhhhh--Cc---ccccCCC----------ceEEe--ecCceEEEecCChHHHHHHHHhhhcccC-
Q psy10609 481 RGFQEVVSPNVYNVKLWQTS--GH---WAHYSEN----------MFSFD--VENETYALKPMNCPGHCLIFDHRVRSWR- 542 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~s--G~---~~~~~~e----------my~~~--d~~~~l~LRPt~e~~~~~~~~~~~~s~~- 542 (715)
.||.+|.||.|.+.++|+++ || ++++.++ ||.+. ..++.++||||||++++..|++...+++
T Consensus 81 ~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~ 160 (454)
T 1g5h_A 81 EQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVNR 160 (454)
T ss_dssp TTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTT
T ss_pred CCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhhccc
Confidence 99999999999999999877 88 8888754 44321 1245789999999999999999998888
Q ss_pred CCCeEEEEeccCcc---cCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCCCC
Q psy10609 543 ELPLRMADFGVLHR---NELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEK 618 (715)
Q Consensus 543 ~LPlrl~~~g~~FR---~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ek 618 (715)
+||++++|+|+||| +|.++. +||+|+|||+|+|+|+||.|+++.+++..++..+..+++.|||+ ..++....
T Consensus 161 ~LP~~~aqig~~fR~~~nE~s~~-~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~--- 236 (454)
T 1g5h_A 161 KLPFGLAQIGVCFHPVSNSNQTP-SSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADC--- 236 (454)
T ss_dssp BSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEEE---
T ss_pred CCCEEEEEeeeeccCCcccccCC-CCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecCC---
Confidence 99999999999999 699885 89999999999999999999999999999999999999999997 22222211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCccccCCCCccccc--eeeEEeecCCCCccccccceeccCcccccCcEEEcCCCce
Q psy10609 619 YLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGP--KIDITITDALKRPHQCATIQLDFQLPIRFNLAYVKNVRAQ 696 (715)
Q Consensus 619 ~~gd~e~w~~a~~~L~~~L~~~g~~~~~~~g~~afYgp--kid~~~~D~~gr~~q~~TiQlDf~~~~rf~l~Y~~~dg~~ 696 (715)
|+.. +....+++|....|.+++||. +.| +++++. +.+.||+++|+|. |++
T Consensus 237 -------~~~~------a~~~~~ie~~~p~g~~e~~g~~~~td----------~~l~~~----~~~s~~~l~y~d~-~~~ 288 (454)
T 1g5h_A 237 -------QDEL------GRKGSKLYYSFPWGKEPIETLWNLGD----------QELLHT----YPGNVSTIQGRDG-RKN 288 (454)
T ss_dssp -------ECTT------SCEEEEEEEEETTEEEEEEEEEEEES----------HHHHHH----STTCGGGSCEEET-TEE
T ss_pred -------HHHH------HhcCCCcEEecCCCceEEEEecCCCH----------HHHHhc----cCCceeeEEEECC-CCc
Confidence 2110 122334445554555555551 111 222221 2378899999995 555
Q ss_pred ecccc
Q psy10609 697 THELP 701 (715)
Q Consensus 697 ~~~~~ 701 (715)
..|.+
T Consensus 289 ~~P~v 293 (454)
T 1g5h_A 289 VVPCV 293 (454)
T ss_dssp ECCEE
T ss_pred EeeEE
Confidence 55643
No 29
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.94 E-value=1.4e-27 Score=264.93 Aligned_cols=156 Identities=19% Similarity=0.293 Sum_probs=142.5
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cc-ccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~-~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.++++++.|++.+++++.++||++|.||+|++.++|.++ |+ |+.+.++||+|.|. |+.++|||+.|+
T Consensus 6 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~ 85 (423)
T 1htt_A 6 AIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTA 85 (423)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHH
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchH
Confidence 4789999999999999999999999999999999999999999999987 87 88899999999886 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc-
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF- 606 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl- 606 (715)
++++++... .+++++|+|+||+|+|||+|+++ .| |+|||+|.|+|+||.++ .+++| ++.++.++|++||+
T Consensus 86 ~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~p~--~g--R~Ref~Q~d~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~ 157 (423)
T 1htt_A 86 GCVRAGIEH-GLLYNQEQRLWYIGPMFRHERPQ--KG--RYRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGIS 157 (423)
T ss_dssp HHHHHHHHH-TCSTTCCEEEEEEEEEECCCCCC--SS--CCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHTCG
T ss_pred HHHHHHHhc-ccccCCCeEEEEEcCEecCCCCC--CC--ccceeEEeeEEEECCCCchhhHH---HHHHHHHHHHHCCCC
Confidence 999998755 35789999999999999999777 48 99999999999999875 56666 57899999999999
Q ss_pred E-EEEEEccC
Q psy10609 607 T-FNLRLSTR 615 (715)
Q Consensus 607 ~-~~v~l~~~ 615 (715)
+ |++.+++.
T Consensus 158 ~~~~i~i~~~ 167 (423)
T 1htt_A 158 EHVTLELNSI 167 (423)
T ss_dssp GGCEEEEEEC
T ss_pred CCcEEEEcCC
Confidence 5 99999875
No 30
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.94 E-value=9.8e-27 Score=257.99 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=144.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-Cc-ccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~-~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.|+++++.|++.+++++.++||++|.||+|++.++|.++ |+ |+.+.++||++.|. |+.++|||+.|+
T Consensus 5 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~ 84 (421)
T 1h4v_B 5 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTA 84 (421)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchH
Confidence 4789999999999999999999999999999999999999999999988 87 89999999999876 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++.....+++++|+|+||+|+|||+|+++ .| |+|||+|.|+|+||.++ .+++| ++.++.++|++||++
T Consensus 85 ~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~--~g--R~REf~Q~g~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~ 157 (421)
T 1h4v_B 85 AMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ--KG--RYRQFHQVNYEALGSENPILDAE---AVVLLYECLKELGLR 157 (421)
T ss_pred HHHHHHHhccccccCCCeEEEEecCeecCCCCC--CC--CcccEEEccEEEECCCChhhhHH---HHHHHHHHHHHcCCC
Confidence 999999876567889999999999999999876 48 99999999999999875 56666 678999999999998
Q ss_pred -EEEEEccC
Q psy10609 608 -FNLRLSTR 615 (715)
Q Consensus 608 -~~v~l~~~ 615 (715)
|++.+++.
T Consensus 158 ~~~i~i~~~ 166 (421)
T 1h4v_B 158 RLKVKLSSV 166 (421)
T ss_pred ceEEEEcCC
Confidence 99999874
No 31
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.94 E-value=4.1e-28 Score=270.36 Aligned_cols=218 Identities=18% Similarity=0.258 Sum_probs=172.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhh-hCcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~-sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|+++|+|.|+++++.|++.+++++.++||++|.||.|++.++|.+ +|+ .+.++||+|.|. |+.++|||+.|++
T Consensus 8 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~~l~LrPd~t~~ 85 (434)
T 1wu7_A 8 KIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGREVTLIPEATPS 85 (434)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSCEEEECSCSHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCCEEEeCCCChHH
Confidence 478999999999999999999999999999999999999999999987 687 678899999886 7899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 607 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~- 607 (715)
+++++... .++ ++|+|+||+|+|||+|+++ .| |+|||+|.|+|+||.++ .+++| ++.++.++|++||++
T Consensus 86 ~aR~~~~~-~~~-~lP~rl~~~g~vfR~erp~--~g--R~REF~Q~d~ei~g~~~~~ad~E---~i~~~~~~l~~lgl~~ 156 (434)
T 1wu7_A 86 TVRMVTSR-KDL-QRPLRWYSFPKVWRYEEPQ--AG--RYREHYQFNADIFGSDSPEADAE---VIALASSILDRLGLQD 156 (434)
T ss_dssp HHHHHTTC-TTC-CSSEEEEECCEEECCCCSC--SS--CCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTTTT
T ss_pred HHHHHHhc-CCC-CCCeEEEEEcCeecCCCCC--CC--CccceEEeeEEEEcCCChHhhHH---HHHHHHHHHHHcCCCC
Confidence 99999876 666 7999999999999999877 48 99999999999999985 56666 678999999999997
Q ss_pred -EEEEEccCC--CC---CCCCHHHHHHHHHHHHHHH---------------HhcCCCccccCCCCccc--cceeeEEe--
Q psy10609 608 -FNLRLSTRP--EK---YLGELEVWNKAEKQLEASL---------------NSFGEPWTENPGDGAFY--GPKIDITI-- 662 (715)
Q Consensus 608 -~~v~l~~~~--ek---~~gd~e~w~~a~~~L~~~L---------------~~~g~~~~~~~g~~afY--gpkid~~~-- 662 (715)
|++.+++++ +. .+| .+.|. .|.+++ ...|++....++.++|+ +|+++- +
T Consensus 157 ~~~i~l~~~g~~~~~~~~~g-~~~~~----~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-l~~ 230 (434)
T 1wu7_A 157 IYEIRINSRKIMEEIIGGMT-SSDPF----SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDE-MAR 230 (434)
T ss_dssp SEEEEEEEHHHHHHHHHTTC-SSCHH----HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHH-HHH
T ss_pred ceEEEECChhhHHHHHHHhC-cHhHH----HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHH-HHH
Confidence 999999874 21 233 34442 233333 33444433333345677 787543 3
Q ss_pred -----ecCCCCccc---------cccceeccCcccccC
Q psy10609 663 -----TDALKRPHQ---------CATIQLDFQLPIRFN 686 (715)
Q Consensus 663 -----~D~~gr~~q---------~~TiQlDf~~~~rf~ 686 (715)
.+++.+.++ +.++++|+.+++.++
T Consensus 231 ~~~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgld 268 (434)
T 1wu7_A 231 ITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLS 268 (434)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCcc
Confidence 233333232 226999999998776
No 32
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.93 E-value=3.4e-27 Score=261.60 Aligned_cols=143 Identities=13% Similarity=0.027 Sum_probs=121.3
Q ss_pred eeEEeCcccHHHHHHHHHHHHHHHH-HcC-cEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHH
Q psy10609 455 GSCFFQPKGAFIYNTLVEFIRSEYR-KRG-FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCL 532 (715)
Q Consensus 455 G~~~~lP~G~~l~~~L~~~i~~~~~-~~G-y~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~ 532 (715)
|.++|+|+|+.|++.|++.|+..+. +.| +.+|.||+ .++|++||||++|. ++||||+|+++..
T Consensus 95 ~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~------------~~LRPeTaqg~~~ 159 (459)
T 3ikl_A 95 CHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR------------GGLRENLLHGALE 159 (459)
T ss_dssp CSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT------------TB-CSCSHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhhc------------ceECCCCChhHHH
Confidence 4459999999999999996666654 466 67799999 56699999999986 7899999999999
Q ss_pred HHHhhhcccC-CCCeEEEEeccCcccCC--CCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE--
Q psy10609 533 IFDHRVRSWR-ELPLRMADFGVLHRNEL--SGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-- 607 (715)
Q Consensus 533 ~~~~~~~s~~-~LPlrl~~~g~~FR~E~--~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~-- 607 (715)
.|++...+++ +||++++|+|+|||+|+ ++..+||+|+|||+|+|+|+||.|+++.+++..++..+..+++.|||+
T Consensus 160 nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~~ 239 (459)
T 3ikl_A 160 HYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPS 239 (459)
T ss_dssp HTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSGG
T ss_pred HHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999998 99999999999999997 344589999999999999999999999999999999999999999997
Q ss_pred -EEEEE
Q psy10609 608 -FNLRL 612 (715)
Q Consensus 608 -~~v~l 612 (715)
|++.-
T Consensus 240 ~~r~~~ 245 (459)
T 3ikl_A 240 NFSSSD 245 (459)
T ss_dssp GEEEEE
T ss_pred hEEEee
Confidence 66653
No 33
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.93 E-value=5.4e-26 Score=246.05 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=136.5
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh--CcccccCCCceEEeec-CceEEEecCChH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSFDVE-NETYALKPMNCP 528 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s--G~~~~~~~emy~~~d~-~~~l~LRPt~e~ 528 (715)
.++|+++|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+| |+++.+.++||++.|. |+.++|||+.|+
T Consensus 24 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~ 103 (344)
T 1z7m_A 24 LPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTL 103 (344)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcH
Confidence 4789999999999999999999999999999999999999999999986 8999999999999886 789999999999
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 529 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 529 ~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
++++++... ++++|+|+||+|+|||+|+++ .| |+|||+|+|+|+||.++ .+++| ++.++.++|+.||++
T Consensus 104 ~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~--~g--R~REF~Q~g~ei~g~~~~~aDaE---vi~l~~~~l~~lgl~ 173 (344)
T 1z7m_A 104 PLVRLYSQI---KDSTSARYSYFGKIFRKEKRH--KG--RSTENYQIGIELFGESADKSELE---ILSLALQVIEQLGLN 173 (344)
T ss_dssp HHHHHHHTC---CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHH---HHHHHHHHHHHHTCS
T ss_pred HHHHHHHhc---CCCCCeEEEEECcEEccCCCC--CC--CcceeEEEEEEEEcCCCcHHHHH---HHHHHHHHHHHCCCC
Confidence 999988764 668999999999999999887 48 99999999999999875 55655 788999999999997
Q ss_pred -EEEEEccCC
Q psy10609 608 -FNLRLSTRP 616 (715)
Q Consensus 608 -~~v~l~~~~ 616 (715)
|++.+++++
T Consensus 174 ~~~i~l~~~g 183 (344)
T 1z7m_A 174 KTVFEIGSAK 183 (344)
T ss_dssp SEEEEEEEHH
T ss_pred cEEEEECCHH
Confidence 999999873
No 34
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.93 E-value=1.9e-26 Score=235.32 Aligned_cols=179 Identities=21% Similarity=0.279 Sum_probs=163.4
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------HHH
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------MEG 284 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------Le~ 284 (715)
+|+|++|||+.+++++ |+|+.|+|+.++..+++.+|||+|||++++ +++++.+++.++++|.++.+| ..+
T Consensus 1 ~i~I~~p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~l~d--L~~~l~~~~~ve~it~~~~~g~~~~~HS~~H 77 (224)
T 1tke_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVD--ACDLIENDAQLSIITAKDEEGLEIIRHSCAH 77 (224)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEE--TTCCBCSCEEEEEECTTSHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCEEec--cceEcCCCCeEEEEecCchhHHHHHHHHHHH
Confidence 4899999999999998 999999999999999999999999999996 578999999999999999877 478
Q ss_pred HHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 285 LMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 285 lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
+|..|+++.+|..+ ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 78 lL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~~t~edl~~IE~---~m~~iI~~~~pi~~~~---------------- 138 (224)
T 1tke_A 78 LLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEK---RMHELAEKNYDVIKKK---------------- 138 (224)
T ss_dssp HHHHHHHHHSTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHH---HHHHHHTTCCBCEEEE----------------
T ss_pred HHHHHHHHHCCCcEEEECCccCCeEEEEEeCCCCCCHHHHHHHHH---HHHHHHhCCCCEEEEE----------------
Confidence 99999999998543 2589999999999 8999999999997774
Q ss_pred cCcChhhHHhhccc--Ccchhhcccc-ccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 347 RHTGKIKAFKVTKY--NPFKLRILKE-KVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 347 ~~t~~~eA~eLf~~--~~~Kl~Ll~~-~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.++|.. +++|++|++. ++.++.|++|+||+|+|+|+|||||+| |.++.|+|.+++|++|+
T Consensus 139 --~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~T---g~i~~fkl~~~~~~yw~ 207 (224)
T 1tke_A 139 --VSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNM---RFCHHFKLMKTAGAYWR 207 (224)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBG---GGCCCEEEEEEEEEEGG
T ss_pred --ecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCEEEECCCcCCCcC---cccceEEEEEecceeEc
Confidence 899999999987 5899999987 755679999999999999999999999 77999999999999997
No 35
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.92 E-value=2.3e-25 Score=243.50 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=138.8
Q ss_pred cceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccC-CCceEEeec-CceEEEe
Q psy10609 446 LFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS-ENMFSFDVE-NETYALK 523 (715)
Q Consensus 446 Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~-~emy~~~d~-~~~l~LR 523 (715)
||..-+.++|+++|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++| +.+. ++||++.|. |+.++||
T Consensus 19 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~~~my~~~D~~g~~l~LR 96 (373)
T 3rac_A 19 VRGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESSRDWIRLFDGGGDAVALR 96 (373)
T ss_dssp CCCCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSCCCCCBCCCCSSSCEEEC
T ss_pred HHhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcC--CccchhceEEEECCCCCEEEEC
Confidence 33333567999999999999999999999999999999999999999999999887 4667 899999876 7899999
Q ss_pred cCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCC----CCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHH
Q psy10609 524 PMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGAL----TGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRN 599 (715)
Q Consensus 524 Pt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l----~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~ 599 (715)
|+.|+++++++.+...+ +++|+|+||+|+|||+|++|.+ .| |+|||+|+|+|+||.+++..++ .+++.++.+
T Consensus 97 pd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aD-aEvi~l~~~ 172 (373)
T 3rac_A 97 PEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWASG--KAAESTQVGIERIGEEASVDVD-MDVLRLLHE 172 (373)
T ss_dssp SSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC--------------CEEEEEEEEEECSSCCCHHHH-HHHHHHHHH
T ss_pred CcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccCCCcccccccCC--ccceeEEeeeEEECCCCCHHHH-HHHHHHHHH
Confidence 99999999998876544 6899999999999999998421 36 9999999999999998543333 247899999
Q ss_pred HHHHcCcE-EEEEEccCC
Q psy10609 600 VYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 600 il~~LGl~-~~v~l~~~~ 616 (715)
+++.||++ |++.+++++
T Consensus 173 ~l~~lgl~~~~i~l~~~~ 190 (373)
T 3rac_A 173 ASAAAGVRHHRIVVSHAR 190 (373)
T ss_dssp HHHHHTCCSCEEEEEETT
T ss_pred HHHHcCCCceEEEecCHH
Confidence 99999996 999999985
No 36
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.92 E-value=3.1e-25 Score=244.56 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=138.8
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGH 530 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~ 530 (715)
.++|+++|+|.++.+++.|++.+++.++++||++|.||+|++.++|.++| +.+.++||+|.|. |+.++|||+.|+++
T Consensus 12 ~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~g~~l~LRpd~T~~~ 89 (400)
T 3od1_A 12 KPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLRPDMTAPI 89 (400)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTTSCEEEECSCSHHHH
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCCCCEEEECCCCHHHH
Confidence 47899999999999999999999999999999999999999999998886 5678899999886 78999999999999
Q ss_pred HHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-E
Q psy10609 531 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-F 608 (715)
Q Consensus 531 ~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~ 608 (715)
++++.+.. .++++|+|+||+|+|||+|+++ .| |+|||+|+|+|+||.++ .+|+| ++.++.++++.||++ +
T Consensus 90 aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~--~g--R~Ref~Q~g~ei~G~~~~~aDaE---vi~l~~~~l~~lgl~~~ 161 (400)
T 3od1_A 90 ARLVASSL-KDRAYPLRLAYQSNVYRAQQNE--GG--KPAEFEQLGVELIGDGTASADGE---VIALMIAALKRAGLSEF 161 (400)
T ss_dssp HHHHHHHC-SSSCSCEEEEEEEEEECCCC-----C--CCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTCCSE
T ss_pred HHHHHhhc-ccCCCCeEEEEEcCEEeCCCCC--CC--CCCccEEeEEEEECCCChHhHHH---HHHHHHHHHHHCCCCce
Confidence 99988654 3578999999999999999887 48 99999999999999975 56665 789999999999996 9
Q ss_pred EEEEccCC
Q psy10609 609 NLRLSTRP 616 (715)
Q Consensus 609 ~v~l~~~~ 616 (715)
++.+++++
T Consensus 162 ~i~l~~~~ 169 (400)
T 3od1_A 162 KVAIGHVG 169 (400)
T ss_dssp EEEEEEHH
T ss_pred EEEecCHH
Confidence 99999873
No 37
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.91 E-value=2.3e-24 Score=241.42 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=136.0
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhh-CcccccCCCceEEeec-CceEEEecCChHH
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCPG 529 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~s-G~~~~~~~emy~~~d~-~~~l~LRPt~e~~ 529 (715)
.++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++ |+. +.++||+|.|. |+.++|||+.|++
T Consensus 31 ~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g~~l~LRpd~T~~ 108 (456)
T 3lc0_A 31 PVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGGHRVALRPEMTPS 108 (456)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSSCEEEECSCSHHH
T ss_pred CCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCCCEEecCCcCHHH
Confidence 4789999999999999999999999999999999999999999999864 763 67899999886 8899999999999
Q ss_pred HHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCc--
Q psy10609 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF-- 606 (715)
Q Consensus 530 ~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl-- 606 (715)
+++++.... .+.++|+|+||+|+|||+|+++. | |+|||+|+|+|+||.++ .+|+| ++.++.++++.||+
T Consensus 109 ~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~~--g--R~ReF~Q~g~ei~G~~~~~~DaE---vi~l~~~~l~~lgl~~ 180 (456)
T 3lc0_A 109 LARLLLGKG-RSLLLPAKWYSIPQCWRYEAITR--G--RRREHYQWNMDIVGVKSVSAEVE---LVCAACWAMRSLGLSS 180 (456)
T ss_dssp HHHHHHHSC-TTCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHHHH---HHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcC-cccCCCEEEEEeccEEecCCCCC--C--CccceEEEEEEEEcCCChHhhHH---HHHHHHHHHHHcCCCC
Confidence 999998764 35689999999999999999884 8 99999999999999975 56665 78999999999999
Q ss_pred E-EEEEEccCC
Q psy10609 607 T-FNLRLSTRP 616 (715)
Q Consensus 607 ~-~~v~l~~~~ 616 (715)
+ |++.+++++
T Consensus 181 ~~~~i~in~~~ 191 (456)
T 3lc0_A 181 KDVGIKVNSRK 191 (456)
T ss_dssp TTEEEEEEEHH
T ss_pred CceEEEEcCHH
Confidence 4 999999863
No 38
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.90 E-value=4.6e-24 Score=242.79 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=128.8
Q ss_pred hhhhhhcccCCChhhhHHHHHHHHHHhhhhHHHHhhhcC------cceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHH
Q psy10609 407 SLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQE------LFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRK 480 (715)
Q Consensus 407 ~L~r~~G~~~~~~~~L~~~~~~~ee~~~rdH~~Lg~~l~------Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~ 480 (715)
.+.+.+|..++.....++.....+|+.. .|.++..+++ -|.+ +.++|++||+|.++.+++.|++.+++.|.+
T Consensus 20 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~ 97 (517)
T 4g85_A 20 ELVKLQGERVRGLKQQKASAELIEEEVA-KLLKLKAQLGPDESKQKFVL-KTPKGTRDYSPRQMAVREKVFDVIIRCFKR 97 (517)
T ss_dssp -------------------------------------------CCCCCC-CCCTTCCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccccccCCHHHHHHHHH-HHHHhhhhcCCcccccceee-eCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888876666666666655432 2666665553 2233 247899999999999999999999999999
Q ss_pred cCcEEEecCcccchhhhhhhCcccccCCCceEEeec-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCC
Q psy10609 481 RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNEL 559 (715)
Q Consensus 481 ~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~ 559 (715)
+||++|.||+|++.++|.++.. ...++||+|.|. |+.++|||+.|+++++++.. ++.+|+|+||+|+|||+|+
T Consensus 98 ~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~----~~~~p~k~yyig~vfR~Er 171 (517)
T 4g85_A 98 HGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQGGELLSLRYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDN 171 (517)
T ss_dssp HTCEECBCCSEEEHHHHHCC--------CSCBBCCTTSCCEEECSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC
T ss_pred CCCeEEECcccCcHHHhhcccC--cCcceeEEEECCCCCEEEeCCcCcHHHHHHHHh----CCCCCceeEEEeceEeccC
Confidence 9999999999999999975432 235789999886 88999999999999887753 4568999999999999998
Q ss_pred CCCCCCcceeeeEeEeeEEEEeCch--hHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC
Q psy10609 560 SGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 560 ~~~l~GL~R~REFtq~d~~if~~~e--qa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~ 616 (715)
++..+| |+|||+|+|+|+||.++ .+|+| ++.++.++++.||+. +.+.++++.
T Consensus 172 p~~~~G--R~ReF~Q~g~ei~G~~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~in~~~ 226 (517)
T 4g85_A 172 PAMTRG--RYREFYQCDFDIAGNFDPMIPDAE---CLKIMCEILSSLQIGDFLVKVNDRR 226 (517)
T ss_dssp ---------CCEEEEEEEEEESCCCTTHHHHH---HHHHHHHHHHHHCCCCEEEEEEEHH
T ss_pred cccccC--ccceeeeeceeccCCccchHHHHH---HHHHHHHHHHhhcCCcccccccchh
Confidence 865468 99999999999999865 45665 688999999999996 999998863
No 39
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.90 E-value=1.7e-23 Score=235.20 Aligned_cols=154 Identities=20% Similarity=0.339 Sum_probs=132.4
Q ss_pred CCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCC-ceEEeec--------------
Q psy10609 452 LSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN-MFSFDVE-------------- 516 (715)
Q Consensus 452 ~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e-my~~~d~-------------- 516 (715)
.++|++||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.++| +. .++ ||+|.|.
T Consensus 14 ~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~-~ke~m~~~~d~~~~g~~~~~~~~~~ 90 (465)
T 3net_A 14 TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQ-GDNIIYGLEPILPPNRQAEKDKSGD 90 (465)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC---CBEEEEEEEC-------------
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CC-CccceEEEecccccccccccccccC
Confidence 36899999999999999999999999999999999999999999998886 43 356 9999886
Q ss_pred --CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hH--HHHHH
Q psy10609 517 --NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QI--GDEIV 591 (715)
Q Consensus 517 --~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa--~~E~~ 591 (715)
++.++|||+.|+++++++.... .+.++|+|+||+|+|||+|+++. | |+|||+|+|+++||.++ .+ |+|
T Consensus 91 ~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~--g--r~Ref~Q~g~ei~G~~~~~a~~DaE-- 163 (465)
T 3net_A 91 TGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERAKD--G--RFRQFRQCDIDVVGREKLSLLYDAQ-- 163 (465)
T ss_dssp ---CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHHHH--
T ss_pred CCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCCCC--C--CcceeEEeeEEEECCCCccchhhHH--
Confidence 6899999999999999988765 35689999999999999999884 8 99999999999999975 67 776
Q ss_pred HHHHHHHHHHHHcCcE-EEEEEccCC
Q psy10609 592 GALDFLRNVYSIFGFT-FNLRLSTRP 616 (715)
Q Consensus 592 ~~l~~~~~il~~LGl~-~~v~l~~~~ 616 (715)
++.++.++++.||++ |++.+++++
T Consensus 164 -vi~l~~~~l~~lgl~~~~i~in~~~ 188 (465)
T 3net_A 164 -MPAIITEIFEAVNIGDFVIRINNRK 188 (465)
T ss_dssp -HHHHHHHHHHHHTCSCEEEEEEEHH
T ss_pred -HHHHHHHHHHHcCCCceEEEECCHH
Confidence 689999999999996 999999874
No 40
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=227.65 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=129.3
Q ss_pred hHHHHhhhcCcceeccCCCeeEEeCcccHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee
Q psy10609 436 DHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV 515 (715)
Q Consensus 436 dH~~Lg~~l~Lf~~~~~~~G~~~~lP~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d 515 (715)
.|....++. |.+ +.++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++.. ...++||+|.|
T Consensus 3 ~~~~~~~~~--~~~-~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~f~D 77 (464)
T 4g84_A 3 GSEFELRRQ--FVL-KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKD 77 (464)
T ss_dssp ------------CC-CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBCC
T ss_pred chhhhHhhc--cce-eCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEEEEC
Confidence 344444544 222 4578999999999999999999999999999999999999999999975432 23578999988
Q ss_pred c-CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch--hHHHHHHH
Q psy10609 516 E-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVG 592 (715)
Q Consensus 516 ~-~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e--qa~~E~~~ 592 (715)
+ |+.++|||+.|+++++++.. ++.+|+|+||+|+|||+|+++.-+| |.|||+|+|+++||.++ .+|+|
T Consensus 78 ~~g~~l~LRPd~T~~~aR~~~~----~~~~p~k~~y~g~vfR~erp~~~~g--R~Ref~Q~g~ei~G~~~~~~aDaE--- 148 (464)
T 4g84_A 78 QGGELLSLRYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPMIPDAE--- 148 (464)
T ss_dssp CSSCCEEECSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHHHH---
T ss_pred CCCCEEEeCCcCcHHHHHHHHh----cCCCCceeEEEecceeccCCccccC--ccceeeecceeccCCccchhhHHH---
Confidence 6 88999999999998887653 4578999999999999998864235 99999999999999865 45666
Q ss_pred HHHHHHHHHHHcCcE-EEEEEccC
Q psy10609 593 ALDFLRNVYSIFGFT-FNLRLSTR 615 (715)
Q Consensus 593 ~l~~~~~il~~LGl~-~~v~l~~~ 615 (715)
++.++.++++.||+. +.+.++++
T Consensus 149 vi~l~~~~l~~lgl~~~~i~i~~~ 172 (464)
T 4g84_A 149 CLKIMCEILSSLQIGDFLVKVNDR 172 (464)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEEH
T ss_pred HHHHHHHHHHHhCCCCcceeecch
Confidence 688999999999997 99999876
No 41
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.88 E-value=3.1e-23 Score=241.83 Aligned_cols=181 Identities=22% Similarity=0.279 Sum_probs=164.0
Q ss_pred CceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHH-------HH
Q psy10609 211 EEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV-------ME 283 (715)
Q Consensus 211 ~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~g-------Le 283 (715)
.+|+|++|||+.++++. |+|+.|||+.+++.+++.+|||+|||++++ +++++..++.++++|.++.+| ..
T Consensus 2 ~~~~i~~~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~~~d--l~~~l~~d~~v~~~~~~~~~g~~~~~HSa~ 78 (645)
T 1nyr_A 2 EQINIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVD--LTKPLETDGSIEIVTPGSEEALEVLRHSTA 78 (645)
T ss_dssp --CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEEC--TTSCCCSCBCCCEECTTSHHHHHHHHHHHH
T ss_pred CceEEEeCCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCEEEe--CCcccCCCCeEEEeeccchhHHHHHHHHHH
Confidence 47999999999999996 999999999999999999999999999985 689999999999999999887 47
Q ss_pred HHHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCcc
Q psy10609 284 GLMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPH 345 (715)
Q Consensus 284 ~lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~ 345 (715)
++|..|+++.+|..+ ..+|.+++.+|++ .|.++|+++.|+.+..
T Consensus 79 HlL~~A~~~~~~~~~~~~g~~~~~g~~~Df~~~~~~t~edl~~IE~---~m~~iI~~~~pi~~~~--------------- 140 (645)
T 1nyr_A 79 HLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEK---TMKQIVNENMKIERKV--------------- 140 (645)
T ss_dssp HHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSCCCSTTHHHHHH---HHHHHHHTTCCEEEEE---------------
T ss_pred HHHHHHHHHHcCCcEEEECCccCCceEEEecCCCCCCHHHHHHHHH---HHHHHHHhCCCeEEEE---------------
Confidence 899999999998643 2579999999999 8999999999987764
Q ss_pred ccCcChhhHHhhcccCcchhhccccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCCC
Q psy10609 346 VRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFPD 418 (715)
Q Consensus 346 ~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~~ 418 (715)
+++++|.++|..+++|++|++..+.++.|++|+||+|+|+|+||||||| |.++.|+|++++|++|..
T Consensus 141 ---~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~~~dlC~G~Hv~~T---g~i~~fkl~~~~~a~~~~ 207 (645)
T 1nyr_A 141 ---VSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPST---AKIKEFKLLSTAGAYWRG 207 (645)
T ss_dssp ---CTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTEEEECCSCCCSCG---GGCCEEEEEEEEEEETTS
T ss_pred ---ecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECCEEEecCCcccCCC---CCCceEEEeeeCchHHHH
Confidence 8999999999888999999998876568999999999999999999999 889999999999999984
No 42
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.87 E-value=7.8e-23 Score=237.94 Aligned_cols=179 Identities=21% Similarity=0.282 Sum_probs=162.8
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHH-------HH
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVM-------EG 284 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gL-------e~ 284 (715)
+|+||||||+.+++++ |+|+.|+|+.|++.+++.+|||+|||++++ ++++++.++.++++|.++.+++ .+
T Consensus 1 ~~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~d--l~~~l~~d~~~~~~~~~~~~~~~~~~HSa~H 77 (642)
T 1qf6_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVD--ACDLIENDAQLSIITAKDEEGLEIIRHSCAH 77 (642)
T ss_dssp -CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEE--TTSCBCSCEECCEECTTSHHHHHHHHHHHHH
T ss_pred CceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEec--cccccCCCceEEEeecCcHHHHHHHHHHHHH
Confidence 4899999999999996 999999999999999999999999999985 6899999999999999998874 77
Q ss_pred HHHHHHHhcCCCce------------------eecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccc
Q psy10609 285 LMKDIVKEKQPFER------------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHV 346 (715)
Q Consensus 285 lm~~aV~~l~P~~r------------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~ 346 (715)
+|..|+++++|..+ ..+|.+|+.+|++ .|.++|+++.|+.+..
T Consensus 78 lL~~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~~t~edl~~IE~---~m~~iI~~~~~v~~~~---------------- 138 (642)
T 1qf6_A 78 LLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEK---RMHELAEKNYDVIKKK---------------- 138 (642)
T ss_dssp HHHHHHHHHCTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHH---HHHHHHHHTCBEEEEE----------------
T ss_pred HHHHHHHHhCCCcEEEECCccCCeeEEEEeCCCCCCHHHHHHHHH---HHHHHHHcCCCEEEEE----------------
Confidence 99999999998643 2589999999999 8999999999887764
Q ss_pred cCcChhhHHhhccc--Ccchhhcc-ccccCCCceEEEeeCCeeeeccCcCCCCCccCCCcchhhhhhhhcccCC
Q psy10609 347 RHTGKIKAFKVTKY--NPFKLRIL-KEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAESLQRVYGISFP 417 (715)
Q Consensus 347 ~~t~~~eA~eLf~~--~~~Kl~Ll-~~~~~~~~vtlY~~g~~~D~c~GP~vpsT~~~G~lk~f~L~r~~G~~~~ 417 (715)
+++++|.++|+. +++|++++ +..+.++.|++|+||+|+|+|+|||||+| |.++.|+|++++|.+|.
T Consensus 139 --~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~T---g~I~~fkl~~~~~~yw~ 207 (642)
T 1qf6_A 139 --VSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNM---RFCHHFKLMKTAGAYWR 207 (642)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTEEECCSSCCCSBG---GGCCSEEEEEEEEEEGG
T ss_pred --ecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCEEEecCCCccCCC---CcceeEEEeeecccccc
Confidence 899999999987 68999999 77765568999999999999999999999 78999999999999998
No 43
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.80 E-value=5.6e-20 Score=193.06 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=119.4
Q ss_pred HHHHHHH--HHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC-CC
Q psy10609 469 TLVEFIR--SEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE-LP 545 (715)
Q Consensus 469 ~L~~~i~--~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~-LP 545 (715)
.|+++++ +.+.++||++|.||+|++.++|.+ + +|. +.+|+.++|||+.|++++ .+.. .+++ +|
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d-~f~-d~~g~~l~LRpd~T~~~a---~~~~-~~~~~~p 70 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N-FFL-DRKGNLFSIREDFTKTVL---NHRK-RYSPDSQ 70 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S-CEE-ETTSCEEEECCCHHHHHH---HHHT-TCTTCCC
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c-ccC-CCCCCEEEeCCcChHHHH---HHHh-hcCCCCc
Confidence 4778888 999999999999999999999965 2 452 234899999999999998 3333 3667 99
Q ss_pred eEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHHHHHHHHHHHHHHHHHHcCcE-EEEEEccCC--CCCCC
Q psy10609 546 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP--EKYLG 621 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~~E~~~~l~~~~~il~~LGl~-~~v~l~~~~--ek~~g 621 (715)
+|++++|+|||+|+++. |||+|+|+|+||.++ .+++| ++.++.++++.||++ +++.+|+++ ++.++
T Consensus 71 ~R~~y~g~vfR~e~~~~-------Ref~Q~g~ei~g~~~~~~DaE---vi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~ 140 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL-------VAEYQLGLEKVPRNSLDDSLE---VLEIIVESASEFFEGPVIVEIGHTGVYEDLLK 140 (275)
T ss_dssp EEEECCEEEEEEETTEE-------EEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHCCSCEEEEEEETTHHHHHHT
T ss_pred eEEEEeceEEecCCCCC-------CeeeEeCEEEecCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHH
Confidence 99999999999999873 999999999999986 45544 789999999999996 999999996 45554
Q ss_pred CHHHHHHHHHHHHHHHHhcC
Q psy10609 622 ELEVWNKAEKQLEASLNSFG 641 (715)
Q Consensus 622 d~e~w~~a~~~L~~~L~~~g 641 (715)
. .|+.+++.|.++|++.+
T Consensus 141 ~--~~~~~~~~l~~~l~~~~ 158 (275)
T 1usy_A 141 E--IPKDLHEKVLNLIDTKN 158 (275)
T ss_dssp T--SCGGGHHHHHHHHHTTC
T ss_pred h--CCHHHHHHHHHHHHccC
Confidence 4 56666666766665543
No 44
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.70 E-value=2.7e-17 Score=158.47 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CceeecCCcCC-ceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEc
Q psy10609 141 EASSVFWHSTAHVLGEAMERVYG--GCLCYGPPIEN-GFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTL 217 (715)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~l 217 (715)
+|..++|||++|||+.|++++|| ..+..|+++++ |+|||++++..
T Consensus 2 ~g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~-------------------------------- 49 (157)
T 1v4p_A 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-------------------------------- 49 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC--------------------------------
T ss_pred cchHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCC--------------------------------
Confidence 57899999999999999999998 46788999987 89999975322
Q ss_pred CCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCc
Q psy10609 218 PDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFE 297 (715)
Q Consensus 218 pdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~ 297 (715)
++.+++..|+..|.++|+++.|+.
T Consensus 50 --------------------------------------------------------~t~e~l~~IE~~~n~~I~~~~pi~ 73 (157)
T 1v4p_A 50 --------------------------------------------------------PSDEEIREIERLANEKVKENAPIK 73 (157)
T ss_dssp --------------------------------------------------------CCHHHHHHHHHHHHHHHHHTCBCE
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHHHHcCCCEE
Confidence 344455556666666666666666
Q ss_pred eeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccC-CCc
Q psy10609 298 RLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVN-TPT 376 (715)
Q Consensus 298 r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~-~~~ 376 (715)
+..++.++|.++|. .+.++.+. .++ .+.
T Consensus 74 ~~~~~~~eA~~~f~------------------------------------------------~~~~~~~~---~~~~~~~ 102 (157)
T 1v4p_A 74 IYELPREEAEKMFG------------------------------------------------EDMYDLFP---VPEDVRI 102 (157)
T ss_dssp EEEEEHHHHHHHHG------------------------------------------------GGGSCSSC---CCTTCCE
T ss_pred EEEeCHHHHHHhhC------------------------------------------------cccccccc---CCCCCCe
Confidence 66666666666554 21111110 111 157
Q ss_pred eEEEeeCCe-eeeccCcCCCCCccCCCcchhhhhhhhc
Q psy10609 377 TTAYRCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYG 413 (715)
Q Consensus 377 vtlY~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G 413 (715)
|.+|+||+| +|+|+||||++| |.++.|+|.++.+
T Consensus 103 vrv~~ig~~~~~~C~GtHv~~T---g~I~~fki~~~~~ 137 (157)
T 1v4p_A 103 LKVVVIEDWNVNACNKEHTKTT---GEIGPIKIRKVRF 137 (157)
T ss_dssp EEEEEETTTEEEECCSCCCSBG---GGTCCEEEEEEEE
T ss_pred EEEEEECCeeEeCCCCCccCCh---hhcceEEEEEEEe
Confidence 999999999 999999999999 7799999998766
No 45
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.66 E-value=8.9e-16 Score=162.03 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEee-cCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d-~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
..++++++.+++.+..+||++|.||.|++.++|..+|+++. .+||.+.+ -+++++|||+++|++..+++....+ ++
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~--~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~-~~ 147 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERL-WD 147 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTT-SC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcc--cccEEeecccccchhhhhcChHHHHHHHHHHHhC-CC
Confidence 34688999999999999999999999999999999998762 14553221 1256899999999999877766555 78
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCc-EEEEEE
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRL 612 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl-~~~v~l 612 (715)
+|+|++++|+|||+|.++. + |+|||+|.|++++|.+++++ +.+++.++..+++.||+ +|.+.-
T Consensus 148 ~PlrlfeiG~vFR~E~~~~--~--r~~EF~qle~~i~g~~~~~~--f~elkg~le~ll~~LGl~~~~~~~ 211 (288)
T 3dsq_A 148 KPIRIFEIGTCYRKESQGA--Q--HLNEFTMLNLTELGTPLEER--HQRLEDMARWVLEAAGIREFELVT 211 (288)
T ss_dssp SCEEEEEEEEEECSCCSSS--C--CCSEEEEEEEEEETCCGGGH--HHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCEEEEEEeeEEecCCCCC--C--cCccEEEEEEEEEcCCchhh--HHHHHHHHHHHHHHcCCCCcEEec
Confidence 9999999999999999874 4 88999999999999875433 44578899999999999 476653
No 46
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-15 Score=130.46 Aligned_cols=78 Identities=63% Similarity=1.064 Sum_probs=73.9
Q ss_pred cceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeeccccccchhhhhhhhhhc
Q psy10609 36 ALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWLAFVN 115 (715)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (715)
.+++|++|||+++.+..+++|+.|+|+.++.++++.+++|+|||++|||++||+.||+|+++
T Consensus 10 ~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~v------------------ 71 (88)
T 1wwt_A 10 KPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELL------------------ 71 (88)
T ss_dssp CEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEEC------------------
T ss_pred CCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEE------------------
Confidence 56899999999999998789999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccccccccccCCCCChHHHHHHHHHHH
Q psy10609 116 GVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTA 151 (715)
Q Consensus 116 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 151 (715)
++++++|.++||||++
T Consensus 72 --------------------t~~~~eg~~i~rHS~~ 87 (88)
T 1wwt_A 72 --------------------KFEDEEAQAVYSGPSS 87 (88)
T ss_dssp --------------------SSCCSCCSCSCCCCSC
T ss_pred --------------------eCCCHHHhhheeccCC
Confidence 9999999999999974
No 47
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.35 E-value=7.5e-12 Score=132.14 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccc--cCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAH--YSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~--~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
++++.+.+++.+...||+||.||.|++.+.+...+.... ..++||.+ ++.++|||+.+|.+...++... +....
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~LR~slsp~L~~~l~~n~-~~~~~ 154 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV---DKNFCLRPMLTPNLYNYLRKLD-RALPD 154 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE---TTTEEECSCSHHHHHHHHHHHT-TTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee---CCCeeEcccChHHHHHHHHHhh-ccCCC
Confidence 478899999999999999999999999998877664332 34567777 3578999999999987665433 34579
Q ss_pred CeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcEEEEE
Q psy10609 545 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 611 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~~~v~ 611 (715)
|+|+|++|+|||+|..+. + |.+||+|.|+++++... . +.++..++..+++.||++|++.
T Consensus 155 p~rlfeiG~vFR~E~~~~--~--~~~Ef~ql~~~~~g~~~-~---f~elkg~le~ll~~lGl~~~~~ 213 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESDGK--E--HLEEFTMLVFWQMGSGC-T---RENLESIITDFLNHLGIDFKIV 213 (290)
T ss_dssp SEEEEEEEEEECCCSCSS--S--CCSEEEEEEEEEESTTC-C---HHHHHHHHHHHHHHHTCCCEEE
T ss_pred CeEEEEEcCEEecCCCCC--c--CcchheEEEEEEEcCCh-H---HHHHHHHHHHHHHHcCCCcEEe
Confidence 999999999999997653 5 89999999999998753 2 2346788889999999986653
No 48
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.17 E-value=4.5e-11 Score=139.06 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeecCCc--CCceEEEeec
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGCLCYGPPI--ENGFYYDMYL 182 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 182 (715)
.-++|||++|||+.|++++||..+..++|. .+|+|||+..
T Consensus 595 ~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~ 636 (739)
T 2ztg_A 595 RHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTH 636 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeC
Confidence 458999999999999999999888777777 7899999964
No 49
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=98.98 E-value=1.9e-10 Score=118.25 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeecCCcC-CceEEEee
Q psy10609 142 ASSVFWHSTAHVLGEAMERVYGGCLCYGPPIE-NGFYYDMY 181 (715)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 181 (715)
..-+.|||++|||+.|++++||.. +.|+.++ ++||||+.
T Consensus 92 ~~~~~~HTa~HLL~~al~~~~g~~-~~G~~v~~~~~r~Df~ 131 (241)
T 3kew_A 92 FDGMQQHLGQHLLSGCFYDLFGAN-TCGFHLGKEISTVDIV 131 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECSSCEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCC-eEeccccCCeEEEEEC
Confidence 355889999999999999999876 5888885 78999996
No 50
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=98.89 E-value=1.1e-08 Score=108.03 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=82.7
Q ss_pred cccHHHHHHHHHHHHHHHHHcCcEEEecCcccch-hhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhc
Q psy10609 461 PKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 461 P~G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~-el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
..-.+++..+.+.+++.|.++||.+|.||.|++. +++..+..-+. .++|.+.-.++.++|+...+... ....
T Consensus 12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~~~~~~~~L~~Spe~~~-----~~l~ 84 (294)
T 1nnh_A 12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVEIYGVKMRLTHSMILHK-----QLAI 84 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEEETTEEEEECSCSHHHH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEEcCCCCEEeccChHHHH-----HHHh
Confidence 4556889999999999999999999999999998 76655411222 56788654467888975443322 2211
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 583 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~ 583 (715)
. . -|.|++++|+|||+|.+|.-.| |-+ ||||.|++..+.+
T Consensus 85 ~-~-g~~rvf~ig~~FR~E~pq~~~~--RH~~EFtqle~e~~~~~ 125 (294)
T 1nnh_A 85 A-M-GLKKIFVLSPNIRLESRQKDDG--RHAYEFTQLDFEVERAK 125 (294)
T ss_dssp H-T-TCCEEEEEEEEECCCCGGGCSS--SCCSEEEEEEEEEETCC
T ss_pred h-c-CccceEEEEccEeCCCCCCCCC--ccccceeEEEEEecCCC
Confidence 1 1 3789999999999999652125 777 9999999999875
No 51
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=98.85 E-value=2.5e-09 Score=124.58 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCc-eeecCCc-CCceEEEeecCchhHHHHHHHHHHHHHHHHHHHHhcCCCceeEEcCCC
Q psy10609 143 SSVFWHSTAHVLGEAMERVYGGC-LCYGPPI-ENGFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEIQVTLPDG 220 (715)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~I~I~lpdG 220 (715)
..+.|||++|||+.|++++||.. .+.|+.+ .+++|||+.....
T Consensus 608 ~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~----------------------------------- 652 (752)
T 2zze_A 608 QHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR----------------------------------- 652 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSC-----------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCC-----------------------------------
Confidence 45889999999999999999875 5788887 6789999964322
Q ss_pred cEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHHHHHHHHHHHhcCCCceee
Q psy10609 221 KIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLE 300 (715)
Q Consensus 221 ~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gLe~lm~~aV~~l~P~~r~~ 300 (715)
++.+++..++..|.++|+++.|.....
T Consensus 653 -----------------------------------------------------lt~edL~~IE~~vNeiI~~nlpV~~~~ 679 (752)
T 2zze_A 653 -----------------------------------------------------ISEEELXEIEMLANRIVMEDRXVTWEW 679 (752)
T ss_dssp -----------------------------------------------------CCHHHHHHHHHHHHHHHHHTCBEEEEE
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHHHHhCCccceee
Confidence 344455556666666666666666656
Q ss_pred cCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCcccccCCccccCcChhhHHhhcccCcchhhccccccCCCceEEE
Q psy10609 301 MKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAY 380 (715)
Q Consensus 301 vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~eA~eLf~~~~~Kl~Ll~~~~~~~~vtlY 380 (715)
++.++|.+++. ...++ ...+.++.|.+|
T Consensus 680 ~s~eEA~~~~~------------------------------------------------~~lf~----~ge~ygd~VRVV 707 (752)
T 2zze_A 680 LPRTTAEQXYG------------------------------------------------FRLYQ----GGVVPGREIRVV 707 (752)
T ss_dssp EEHHHHHHHHC------------------------------------------------GGGCS----SCCCCSSEEEEE
T ss_pred cCHHHHhhcch------------------------------------------------hhhhc----CCCCCCCeEEEE
Confidence 66666655443 10000 000013579999
Q ss_pred eeCCe-eeeccCcCCCCCccCCCcchhhhhhhhc
Q psy10609 381 RCGPL-IDLCRGPHNSSTYWEGKADAESLQRVYG 413 (715)
Q Consensus 381 ~~g~~-~D~c~GP~vpsT~~~G~lk~f~L~r~~G 413 (715)
++|+| +++|.||||++| |.++.|+|.+.++
T Consensus 708 ~IGd~svelCGGTHV~nT---geIG~fKIls~s~ 738 (752)
T 2zze_A 708 XIEDWDVQACGGTHLPST---GLVGPIXILRTER 738 (752)
T ss_dssp EETTTEEEECCSCCCSBG---GGGCCEEEEEEEE
T ss_pred EECCceeCCCCCCccCCH---hHccEEEEEEEEE
Confidence 99998 999999999999 7799999988765
No 52
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=98.82 E-value=7.7e-09 Score=104.62 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC---ceeecCCc-CCceEEEeec
Q psy10609 140 EEASSVFWHSTAHVLGEAMERVYGG---CLCYGPPI-ENGFYYDMYL 182 (715)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~ 182 (715)
.....+.|||++|||+.|++++||. ... |+.+ .++||||+..
T Consensus 91 rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~-g~~v~~~~~r~Df~~ 136 (216)
T 2e1b_A 91 YRYKLMRIHTGLHLLEHVLNEVLGEGNWQLV-GSGMSVEKGRYDIAY 136 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCEEE-ECCBCSSEEEEEEEC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCccceee-eeeEcCCcEEEEEeC
Confidence 4456689999999999999999987 444 5555 7789999964
No 53
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.75 E-value=9.5e-09 Score=85.60 Aligned_cols=61 Identities=31% Similarity=0.311 Sum_probs=56.6
Q ss_pred ceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeeec
Q psy10609 37 LNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (715)
.++|++|||+.+.++. ++|+.|+|+.++.+++...++|+|||+++||+++|..+|.|++++
T Consensus 2 ~i~i~~p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp CEEEECTTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred eEEEEcCCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEE
Confidence 3789999999988887 899999999998888889999999999999999999999999994
No 54
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.75 E-value=4.7e-09 Score=90.99 Aligned_cols=74 Identities=42% Similarity=0.544 Sum_probs=66.8
Q ss_pred hcCCCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCChHHH
Q psy10609 207 AKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVM 282 (715)
Q Consensus 207 ~~~~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~~gL 282 (715)
++..++|+|++|||+.++++.|++|+.|+|+.++..+++.+|||+|||++++ |++.+..++.+++++.++.+|+
T Consensus 6 ~~~~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~d--L~~~l~~d~~ve~vt~~~~eg~ 79 (88)
T 1wwt_A 6 SGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWD--LDRPLEEDCTLELLKFEDEEAQ 79 (88)
T ss_dssp CCSCCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEEC--SSSCCCSSEEEEECSSCCSCCS
T ss_pred cCCCCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEEC--CCcCcCCCCEEEEEeCCCHHHh
Confidence 3456789999999999999988999999999999999999999999999985 6889999999999999887654
No 55
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.62 E-value=2.3e-07 Score=102.86 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.++||.+|.||.|+.. .++ -..+||.+.-.++.++|+...+...-.+. +
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~----~~e----~~~~~f~~~~~~~~~~L~~Spql~~~~~~-----~-- 197 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIAS----ATE----GGAQLFPVIYFGKEAFLAQSPQLYKELMA-----G-- 197 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CSS----TTCCCCEEEETTEEEEECSCCHHHHHHHH-----H--
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEee----CCC----CCceeEEEecCCceEEecCCcHHHHHHHH-----h--
Confidence 35678899999999999999999999999875 111 13478888656788999843343322222 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 583 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~ 583 (715)
-+-|+|++|+|||+|.+.. + |-+ ||||.|++....+
T Consensus 198 -g~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~~ 234 (429)
T 1wyd_A 198 -VVERVFEVAPAWRAEESDT--P--FHLAEFISMDVEMAFAD 234 (429)
T ss_dssp -HHSEEEEEEEEECCCCCCS--S--SCCSEEEEEEEEEETCC
T ss_pred -CcCceEEEcccccccCCcc--c--cccceeeEeeeeecCCC
Confidence 1679999999999998864 5 777 9999999998875
No 56
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.61 E-value=1.3e-07 Score=105.09 Aligned_cols=101 Identities=15% Similarity=0.006 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.++||.+|.||.|+.. .++ -..+||.+.-.++.++||-.. ..+. ..+.+
T Consensus 134 ~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~-----~~e---~~~~~f~~~~~~~~~~Lr~Sp-el~~----~~~~~-- 198 (434)
T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTG-----AVE---GGATLFKLKYFDKYAYLSQSA-QLYL----EAAIF-- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESC-----CSS---CGGGCCEEEETTEEEEECSCS-HHHH----HHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee-----cCC---CCceeEEEeecCCcEEeccCh-HHHH----HHHhc--
Confidence 45778899999999999999999999999865 111 134678886557889999222 2221 11211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 583 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~ 583 (715)
-|.|+|++|+|||+|.+.. + |-+ ||||.|++....+
T Consensus 199 -g~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~~ 235 (434)
T 1x54_A 199 -GLEKVWSLTPSFRAEKSRT--R--RHLTEFWHLELEAAWMD 235 (434)
T ss_dssp -HHSEEEEEEEEECCCCCCC--S--SCCSEEEEEEEEEETCC
T ss_pred -CccceEEEecceecCCCCC--c--ccccEEEEeeEEEcCCC
Confidence 2789999999999998864 5 777 9999999998875
No 57
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.55 E-value=7.7e-08 Score=81.71 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=58.3
Q ss_pred cceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 36 ALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
..+.|++|||+++..+. ++|+.|+|..|+..+++.++.|+|||+++||++||..++.|+++
T Consensus 6 ~~i~v~tP~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVL 66 (78)
T ss_dssp CEEEEECTTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEE
T ss_pred ceEEEECCCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEE
Confidence 46889999999999998 89999999999999999999999999999999999999999999
No 58
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.50 E-value=8.9e-07 Score=99.69 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..|.+.+++.|..+||.+|.||+|.... +|. +-++|.+.-.++.++|+-..+- +...+..
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~~----ga~~f~~~~~~~~~~L~~Spql-----~~k~l~~-- 241 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEG----GSSVFEVTYFKGKAYLAQSPQF-----NKQQLIV-- 241 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSS----SSCCCEEEETTEEEEECSCTHH-----HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CCC----CcccceeccCCccEEcccChHH-----HHHHHHh--
Confidence 457889999999999999999999999998854 221 2368888766789999932232 2222211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEE-EeCc-hhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHI-FCTV-EQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~i-f~~~-eqa~~E~~~~l 594 (715)
.-+-|+|++|+|||+|.++. + |-+ ||||.|++. |+.+ ++..+..++++
T Consensus 242 ~g~~rvy~ig~~FR~E~~~~--~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll 292 (487)
T 1eov_A 242 ADFERVYEIGPVFRAENSNT--H--RHMTEFTGLDMEMAFEEHYHEVLDTLSELF 292 (487)
T ss_dssp TTCCEEEEEEEEECCCCCCC--T--TCCSEEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred cCCCceEEEeccEecCCCCC--C--ccchhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 23569999999999999864 5 888 999999987 8764 44444444444
No 59
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.46 E-value=4e-07 Score=100.78 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.++||.+|.||.|+... ++ -.-+||.+.-.++.++|+-..+... ..+. .
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~----~e----~~~~~f~~~~~g~~~~L~~Spel~~-~~l~----~-- 188 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG----AE----GGSGLFGVDYFEKRAYLAQSPQLYK-QIMV----G-- 188 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHH-HHHH----H--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC----CC----CCceeEEEeeCCCcEEeeeCHHHHH-HHHh----h--
Confidence 357888999999999999999999999998752 11 1235777754467789983223222 2221 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeC
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCT 582 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~ 582 (715)
. +-|+|++|+|||+|.+.. | |-+ ||||.|++....
T Consensus 189 g-~~rvf~ig~~FR~E~~~~--~--RH~pEFtqle~e~~~~ 224 (422)
T 1n9w_A 189 V-FERVYEVAPVWRMEEHHT--S--RHLNEYLSLDVEMGFI 224 (422)
T ss_dssp H-HSEEEEEEEC-----------------CCEEEEEEEESC
T ss_pred C-CCceeEEeCceECCCCCC--C--cccceeEEeeeeeeCC
Confidence 1 469999999999998864 5 777 999999999887
No 60
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.38 E-value=2.5e-06 Score=96.08 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++..|.+.+++.|.++||.+|.||.|.+. ..|. ..++|.+..+ +..++||-..+ ++...+..
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~----~~Ga----~a~~F~~~~~~~~~~~yLr~Spq-----Lylk~l~v 239 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAV----AGGA----AARPFITHHNALDMTLYMRIAIE-----LHLKRLIV 239 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSS----SSCCCEEEETTTTEEEEECSCSH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEec----CCCC----cccceEecccCCCceeEEecCHH-----HHHHHHhh
Confidence 35778899999999999999999999999864 1221 2367877533 77899994333 22222211
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.-.-|+|++|+|||+|.+.. . |..||||.|++....+ ++..+..++++
T Consensus 240 --~G~~rVyeig~~FR~E~~~~--r--H~pEFT~lE~e~af~d~~dlm~l~E~ll 288 (493)
T 3a74_A 240 --GGLEKVYEIGRVFRNEGIST--R--HNPEFTMLELYEAYADFRDIMKLTENLI 288 (493)
T ss_dssp --TTCCEEEEEEEEECCCCCBT--T--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred --cccCceEEECccccCCCCCc--c--cCCceeEEEEEecCCCHHHHHHHHHHHH
Confidence 13569999999999999874 4 9999999999997765 34333333333
No 61
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.36 E-value=3.5e-07 Score=75.97 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=58.3
Q ss_pred ceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCC
Q psy10609 212 EIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLD 278 (715)
Q Consensus 212 ~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d 278 (715)
+|+|++|||+.+++++ |+|+.|+++.++..++..+|||+|||+++++ ++.+.+++.+++++..+
T Consensus 2 ~i~i~~p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl--~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHKLVPL--SYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp CEEEECTTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTEECCT--TCBCCSSSBEEEEECCC
T ss_pred eEEEEcCCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCEEeCC--CcCcCCCCEEEEEECCC
Confidence 5899999999999998 9999999999998888999999999999864 68899999999998765
No 62
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.25 E-value=6.6e-06 Score=92.87 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++.+|.+.+++.|...||.+|.||.|.+. ..|. ..++|.+..+ +..++|+-..+- +...+..
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~----~~Ga----~ar~F~t~~~~~~~~~yL~~SpqL-----ylk~L~v 248 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA----SARPFITHHNALDLDMYLRIAPEL-----YLKRLVV 248 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS----CCSS----CCCCCEEEETTTTEEEEECSCSHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec----CCCC----cccceEeccCCCCceEEeccCHHH-----HHHHHhh
Confidence 34678899999999999999999999999853 1221 2356776543 778999953332 2222111
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.-.=|+|++|+|||+|.+.. . |..||||.|++....+ ++..+..++++
T Consensus 249 --~G~~rVyeIg~~FR~E~~~~--r--H~pEFt~lE~e~af~d~~dlm~l~E~li 297 (504)
T 1e1o_A 249 --GGFERVFEINRNFRNEGISV--R--HNPEFTMMELYMAYADYHDLIELTESLF 297 (504)
T ss_dssp --HTCCEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred --cCCCcEEEEcccccCCCCCc--c--ccCceeeeeeeecCCCHHHHHHHHHHHH
Confidence 12359999999999998864 4 9999999999997665 34444434333
No 63
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.21 E-value=8.7e-07 Score=75.20 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=59.9
Q ss_pred CCceeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCCCCh
Q psy10609 210 PEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDF 279 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~~d~ 279 (715)
...|.|.+|||..+++++ |+|+.|+|..++...+..+++|+|||+.+++ ++.+.+++.+++++...+
T Consensus 5 ~~~i~v~tP~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L--~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 5 PEEVFVFTPKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGRIVPI--DYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp -CEEEEECTTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTEEECT--TCBCCTTCBEEEEECC--
T ss_pred CceEEEECCCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCEEcCC--CcccCCCCEEEEEccCcc
Confidence 457999999999999998 9999999999999999999999999999864 688999999999998764
No 64
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.21 E-value=9.4e-06 Score=87.50 Aligned_cols=114 Identities=14% Similarity=0.012 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec------CceEEEecCChHHHHHHHHh
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE------NETYALKPMNCPGHCLIFDH 536 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~------~~~l~LRPt~e~~~~~~~~~ 536 (715)
-.+++..|.+.+++.|.+.||.+|.||+|..... .| -.-..|.+.-- +..++|+-..+-..-.++.
T Consensus 35 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---~~----a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~- 106 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV---TD----IHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV- 106 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC---CC----TTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC---CC----CccceEEEEecCcccccCCCEeecCCHHHHHHHHHH-
Confidence 4578889999999999999999999999986431 11 12345655421 2567788544433322222
Q ss_pred hhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 537 RVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 537 ~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ .+ =|+|++|+|||+|.+++ . |..||||.|++.-..+ ++..+..++++
T Consensus 107 ---~--g~-~rvyqIg~~FR~E~~~~--r--H~pEFt~lE~e~af~d~~d~m~~~E~li 155 (345)
T 3a5y_A 107 ---A--GC-GPVFQLCRSFRNEEMGR--Y--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 155 (345)
T ss_dssp ---T--TC-CSEEEEEEEECCCCCBT--T--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---c--CC-CcEEEEEcceeCCCCcc--c--ccchhheeeeeeeCCCHHHHHHHHHHHH
Confidence 1 12 29999999999999853 4 8999999999986654 34444444433
No 65
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.95 E-value=5.2e-05 Score=84.18 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++..+.+.+++.|.+.||.+|.||.|..... -|+ -++|.+.--+..++|+...+- +...+.. .
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---eg~-----~~~f~~~~~~~~~yL~~Spql-----~~q~l~~-~ 201 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EGG-----TELFPMKYFEEDAFLAQSPQL-----YKQIMMA-S 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---SCS-----SSCCEEEETTEEEEECSCSHH-----HHHHGGG-T
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---CCC-----ccceeEeeCCccEEEecChHH-----HHHHHHh-c
Confidence 3567889999999999999999999999987531 122 346776655778899854433 2322221 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCccee-eeEeEeeEEEEeCc--hhHHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRV-RRFQQDDAHIFCTV--EQIGDEIVGALD 595 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~-REFtq~d~~if~~~--eqa~~E~~~~l~ 595 (715)
---|+|++|+|||+|.+.. + |- -||||.|++.-..+ ++..+..++++.
T Consensus 202 -g~~rvf~i~~~FR~E~~~t--~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li~ 252 (438)
T 3nem_A 202 -GLDRVYEIAPIFRAEEHNT--T--RHLNEAWSIDSEMAFIEDEEEVMSFLERLVA 252 (438)
T ss_dssp -TCCEEEEEEEEECCCSSCC--T--TCCSEEEEEEEEEESCSSHHHHHHHHHHHHH
T ss_pred -CCCceEEEcceEECCCCCC--c--ccccceeeeeeeeccCccHHHHHHHHHHHHH
Confidence 1349999999999998763 2 43 49999999995554 344444444443
No 66
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.92 E-value=6.5e-05 Score=84.40 Aligned_cols=140 Identities=13% Similarity=0.140 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEec-Ccccchhh-hhhhCc-ccccC---CCceEEeec---------------------
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVS-PNVYNVKL-WQTSGH-WAHYS---ENMFSFDVE--------------------- 516 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~t-P~L~~~el-~~~sG~-~~~~~---~emy~~~d~--------------------- 516 (715)
..-...+.+.+++.|...||++|.+ |.+++... |..-.. -++-. .+.|.+.+.
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3446778889999999999999876 77765431 222110 01111 122444321
Q ss_pred ---------------CceEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEe
Q psy10609 517 ---------------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC 581 (715)
Q Consensus 517 ---------------~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~ 581 (715)
++..+||+.+.|.....+.......+..|+|++++|+|||+|...+ . ++.+|+|.+..+.+
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~Da--t--HlpeFhQlegl~~~ 379 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDA--T--HLAEFHQIEGVVAD 379 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCS--S--SCSEEEEEEEEEEE
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCC--C--cCCeEEEEEEEEEC
Confidence 1468999999998888776443223468999999999999998764 3 77899999998775
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCcE-EEEE
Q psy10609 582 TVEQIGDEIVGALDFLRNVYSIFGFT-FNLR 611 (715)
Q Consensus 582 ~~eqa~~E~~~~l~~~~~il~~LGl~-~~v~ 611 (715)
.+- . +..+..+...+++.||+. ++.+
T Consensus 380 ~~v-~---f~dLKg~Le~~l~~lG~~~~rfr 406 (508)
T 3l4g_A 380 HGL-T---LGHLMGVLREFFTKLGITQLRFK 406 (508)
T ss_dssp ESC-C---HHHHHHHHHHHHHTTTCCCCEEE
T ss_pred CCC-C---HHHHHHHHHHHHHHcCCcceEee
Confidence 431 1 223556777889999974 5444
No 67
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=97.92 E-value=6.8e-05 Score=83.26 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++.++.+.+++.|.+.||.+|.||.|..... .|+ -++|.+.--+..++|+-..+- +......
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG~-----~~~F~~~~~g~~~~L~~SpqL-----ylq~l~~-- 195 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EGG-----STLFNLDYFGEQSFLTQSSQL-----YLETCIP-- 195 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SCT-----TSCCEEEETTEEEEECSCSHH-----HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CCc-----hhceeeccCCcccccCCChHH-----HHHHhhh--
Confidence 4578889999999999999999999999977542 222 235766555778889854332 2222211
Q ss_pred CCCeEEEEeccCcccCCCCCCCCcceee-eEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~R-EFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. -=|+||+|+|||+|.+.. + |-. ||||.|++.-..+ ++..+..++++
T Consensus 196 g-~~rvfeIg~~FR~E~~~t--~--RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 196 T-LGDVFCIAQSYRAEKSRT--R--RHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp H-HCSEEEEEEEECCCSSCC--T--TCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred c-cCceEEEecceecCCCCc--c--ccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 1 238999999999998642 2 555 9999999996654 44444444444
No 68
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.81 E-value=0.00014 Score=78.46 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccc----c-CCCceEEeec------------CceEEEecCCh
Q psy10609 466 IYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAH----Y-SENMFSFDVE------------NETYALKPMNC 527 (715)
Q Consensus 466 l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~----~-~~emy~~~d~------------~~~l~LRPt~e 527 (715)
-...+.+.+++.|...||++|.+|.+++... |..-+ ++. . ..+.|.+.+. .+..+||+.+.
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~-~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ts 180 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALN-IPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTT-CCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSST
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhC-CCCCCccccccccEEEcCccccccccccccccccceeeccch
Confidence 3567888889999999999999999977532 23221 111 0 1233545421 25678999888
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc-Cc
Q psy10609 528 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GF 606 (715)
Q Consensus 528 ~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L-Gl 606 (715)
|........ ...|+|++++|+|||+|..... ...||+|.++.+.+.+-. +..+......+++.+ |.
T Consensus 181 p~llr~l~~-----~~~piriFEiGrVFR~d~~d~t----H~pEF~qlegl~~g~~v~----f~dLKg~le~ll~~lfG~ 247 (350)
T 1b7y_A 181 PMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT----HEAVFHQLEGLVVGEGIA----MAHLKGAIYELAQALFGP 247 (350)
T ss_dssp HHHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS----CCSEEEEEEEEEEETTCC----HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC----CCChhHEEEEEEECCCCC----HHHHHHHHHHHHHhhcCC
Confidence 888766653 3679999999999998763321 348999999999987421 223455666777776 75
No 69
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.79 E-value=0.00013 Score=81.29 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccC
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 542 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~ 542 (715)
-.+++.++.+.+++.|...||.+|.||.|..... .|. .++|.+.--+..++|+-..+-..-.+.. +
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---eGg-----~~~f~~~~~~~~~~L~~SpqL~lq~l~~----g-- 220 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---EGG-----STLFKLQYFNEPAYLTQSSQLYLESVIA----S-- 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--------------CCCCEEEETTEEEEECSCCHHHHHTTHH----H--
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---CCc-----cccccccccCCCcccccCHHHHHHHHHh----c--
Confidence 3577889999999999999999999999976432 121 2356654446778888644432221111 1
Q ss_pred CCCeEEEEeccCcccCCCCCCCCccee-eeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 543 ELPLRMADFGVLHRNELSGALTGLTRV-RRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 543 ~LPlrl~~~g~~FR~E~~~~l~GL~R~-REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ -|+|++|+|||+|.+.. . |- -||||.|++.-..+ ++..+..++++
T Consensus 221 -~-~rVyeig~~FR~E~~~t--~--rH~pEFtmlE~e~af~d~~d~m~~~E~li 268 (456)
T 3m4p_A 221 -L-GKSFCMLSSYRAEQSRT--V--RHLAEYLHLEAELPFISFEDLLNHLEDLV 268 (456)
T ss_dssp -H-SSEEEEEEEECCCSCCC--S--SCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred -c-CcEEEEEhheecCCCCC--C--cchHHHHHhHHHHhcCCHHHHHHHHHHHH
Confidence 2 48999999999998642 1 22 49999999995554 44444444444
No 70
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=97.75 E-value=1.1e-05 Score=77.10 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=32.2
Q ss_pred CcEEEEeeCCc-ccccCCccccCcChhhHHhhcccC
Q psy10609 327 PTTTAYRCGPL-IDLCRGPHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 327 ~~v~~y~~~~~-~d~~~~p~~~~t~~~eA~eLf~~~ 361 (715)
..+.+|++|+| +++|.|||+++|+...+|+|..+.
T Consensus 101 ~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~ 136 (157)
T 1v4p_A 101 RILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVR 136 (157)
T ss_dssp CEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEE
T ss_pred CeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEE
Confidence 46899999999 999999999999999999998764
No 71
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.70 E-value=0.00033 Score=79.40 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhccc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 541 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~ 541 (715)
.+++..|.+.+++.|...||.+|.||.|.... .|. .-..|.+..+ +..++|+-..+-..-.+.. +
T Consensus 176 ~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----gGa----~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv----~- 242 (521)
T 3bju_A 176 FIIRSKIITYIRSFLDELGFLEIETPMMNIIP----GGA----VAKPFITYHNELDMNLYMRIAPELYHKMLVV----G- 242 (521)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SCCCCEEEETTTTEEEEECSCSHHHHHHHHH----T-
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCceeeccC----CCc----cccceeeecccCCcceEeeCCHHHHHHHHHh----c-
Confidence 46788999999999999999999999997531 221 1345655432 6788999655533322222 1
Q ss_pred CCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 542 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 542 ~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
.+ =|+|++|+|||+|.+.. -+.-||||.|++.-..+ ++..+..++++
T Consensus 243 -g~-~rVyeig~~FR~E~~~t----rH~pEFtmlE~e~af~d~~dlm~l~E~li 290 (521)
T 3bju_A 243 -GI-DRVYEIGRQFRNEGIDL----THNPEFTTCEFYMAYADYHDLMEITEKMV 290 (521)
T ss_dssp -TC-CEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred -Cc-CceEEEEcceeCCCCCC----ccchhhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 11 38999999999998764 27899999999986554 44444444444
No 72
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.65 E-value=0.00028 Score=81.10 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec---CceEEEecCChHHHHHHHHhh-hc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHR-VR 539 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~-~~ 539 (715)
.+++.++.+.+++.|...||.+|+||.|....- .| +.+ |.+... +.-|+|+-..+ . ++.. +.
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~---eG-----Ar~-F~v~~~~~~~~~y~L~qSPQ-l----~kq~Lmv 203 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP---EG-----ARD-YLVPSRVHKGKFYALPQSPQ-L----FKQLLMM 203 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SS-----SCC-CEEECSSSTTCEEECCSCSH-H----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---CC-----Ccc-ceecccccCCceEeCccCHH-H----HHHHHHh
Confidence 467889999999999999999999999975321 12 112 554332 34456773222 2 2222 11
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ .+ =|+||+|+|||+|.... - |--||||.|++.-..+ ++..+..++++
T Consensus 204 ~--G~-~rvfqI~~~FR~E~~~t--~--r~pEFT~lE~e~af~d~~dvm~~~E~li 252 (585)
T 1c0a_A 204 S--GF-DRYYQIVKCFRDEDLRA--D--RQPEFTQIDVETSFMTAPQVREVMEALV 252 (585)
T ss_dssp T--TC-CEEEEEEEEECCCCCBT--T--BCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred c--CC-CceEEEeceeecCCCCC--C--cCcccceeeeeecCCCHHHHHHHHHHHH
Confidence 2 12 39999999999998864 2 6679999999985544 45545444444
No 73
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.65 E-value=0.00017 Score=81.77 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+++..+.+.+++.|...||.+|.||.|..... -|+. +.|.+.--+..++|+-..+- ++..+.. ..
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---egga-----~~F~v~~~~~~~yL~~Spql-----~~k~ll~-~g 309 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---EGGS-----NIFEVKYFDRKAYLAQSPQL-----YKQMAIM-GD 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHH-----HHHHHHT-TT
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---CCCc-----ceeEEecCCCceEeccCHHH-----HHHHHHh-cC
Confidence 467789999999999999999999999987541 1222 34443322445677753332 2222211 11
Q ss_pred CCeEEEEeccCcccCCCCCCCCcce-eeeEeEeeEEE-EeCc-hhHHHHHHHHH
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTR-VRRFQQDDAHI-FCTV-EQIGDEIVGAL 594 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R-~REFtq~d~~i-f~~~-eqa~~E~~~~l 594 (715)
-=|+|++|+|||+|.+.. . | .-||||.|++. |+.. ++.....++++
T Consensus 310 -~~rVfeI~~~FR~E~~~t--~--RHl~EFtmlE~e~af~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 310 -FRKVFEVGPVFRAENSNT--R--RHLTEFEGLDIEMEIVENYHECIDVMEKLF 358 (548)
T ss_dssp -CCEEEEEEEECCCSCCCS--S--SCCSCEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred -cCcEEEEeeeEecCCCCC--C--CcchhhhchhhhhhhhcCHHHHHHHHHHHH
Confidence 259999999999998742 1 2 35999999996 7753 45444444444
No 74
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.63 E-value=0.00029 Score=79.50 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=63.8
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
..+|||+..|++....+.. .+.+..|+|++++|+|||.+.. +. + +.+||+|.++.+.+.+.. +..+....
T Consensus 180 ~svLRTsLlPgLL~~lr~N-~~r~~~pvrLFEIG~VFr~d~~~d~--t--h~~Ef~qLagli~G~~vd----f~dLKgil 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHI-ADKLPLPIKLFSIDRCFRREQGEDA--T--RLYTYFSASCVLVDEELS----VDDGKAVA 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTT-TTTSCSSEEEEEEEEEECCCTTCSS--S--CCSEEEEEEEEEECSSCC----HHHHHHHH
T ss_pred ccccCccchhhHHHHHHHH-HhCCCCCeeEEEEeeEEecCccccc--c--ccceeeEEEEEEECCCCC----HHHHHHHH
Confidence 4689999999877666533 3445789999999999998765 43 3 669999999999987422 23356777
Q ss_pred HHHHHHcCcE-EEEEE
Q psy10609 598 RNVYSIFGFT-FNLRL 612 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l 612 (715)
..+++.||+. ++++-
T Consensus 251 E~LL~~LGi~~~r~~~ 266 (534)
T 2du3_A 251 EALLRQFGFENFRFRK 266 (534)
T ss_dssp HHHHGGGTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8899999985 66653
No 75
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.62 E-value=0.00034 Score=80.28 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec---CceEEEecCChHHHHHHHHhh-hc
Q psy10609 464 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHR-VR 539 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~---~~~l~LRPt~e~~~~~~~~~~-~~ 539 (715)
.+++.++.+.+++.|...||.||+||.|....- .| +.+ |.+... +.-|+|+-..+ . ++.. +.
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~---eG-----Ar~-F~v~~~~~~~~~y~L~qSPQ-l----~kq~Lmv 209 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP---EG-----ARD-FLVPYRHEPGLFYALPQSPQ-L----FKQMLMV 209 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SS-----SCC-CEEECTTSTTEEEECCSCSH-H----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---CC-----CCC-ccccccccCCceeECccCHH-H----HHHHHHH
Confidence 467889999999999999999999999976321 12 112 554332 34455764222 2 2322 11
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
+ .+ =|+||+|+|||+|.... - |--||||.|++.-..+ ++..+..++++
T Consensus 210 ~--G~-~rvfqI~~~FR~E~~~~--~--r~pEFT~lE~e~af~d~~dvm~~~E~li 258 (580)
T 1l0w_A 210 A--GL-DRYFQIARCFRDEDLRA--D--RQPDFTQLDLEMSFVEVEDVLELNERLM 258 (580)
T ss_dssp T--TC-SEEEEEEEEECCCCCCS--S--CCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred h--cc-CCeEEEeceeeCCCCCC--C--cCCCccceeeeecCCCHHHHHHHHHHHH
Confidence 2 12 39999999999998865 2 6679999999985544 44444444443
No 76
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.56 E-value=0.00049 Score=72.47 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcc-ccc---CCCceEEeecCceEEEecCChHHHHHHHHhhhc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHW-AHY---SENMFSFDVENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~-~~~---~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
.-...+.+.+++.+...||+||.+|.+.+... |..-+.- ++- ..+.+.+. +..+||+++.|.+....+...
T Consensus 53 ~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~---e~~vLRtsl~p~ll~~l~~N~- 128 (294)
T 2rhq_A 53 HPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT---DEILMRTHTSPVQARTMEKRN- 128 (294)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS---SSEEECSSSHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc---CcceeeccCHHHHHHHHHhcC-
Confidence 34567888889999999999998888876532 2222110 010 01123342 456899999999877766443
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc-Cc
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GF 606 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L-Gl 606 (715)
+..|+|++++|+|||++..... ...||+|.++.+.+.+-. +..+......+++.+ |+
T Consensus 129 --~~~~~riFEiG~Vfr~d~~d~~----h~~Ef~~Le~~~~g~~~d----f~dlKg~le~ll~~l~g~ 186 (294)
T 2rhq_A 129 --GQGPVKIICPGKVYRRDSDDAT----HSHQFTQIEGLVVDKNIK----MSDLKGTLELVAKKLFGA 186 (294)
T ss_dssp --TCSCEEEEEEEEEECCCCCBTT----BCSEEEEEEEEEEESSCC----HHHHHHHHHHHHHHHHCT
T ss_pred --CCCCccEEEEcCEEecCCCCCC----CCChhhEEEEEEECCCCC----HHHHHHHHHHHHHHHhCC
Confidence 4689999999999998653321 336999999999886421 222445566667766 75
No 77
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.56 E-value=0.00069 Score=76.70 Aligned_cols=113 Identities=14% Similarity=0.006 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
-.+++.++.+.+++.|...||.+|.||.|.... .|- ....|.+... +..++|+-..+-..-.+.. +
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~----gGA----~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v----~ 270 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP----GGA----AAKPFVTHHNALDMEMFLRIAPELYLKRLIV----G 270 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SSCCCEEEETTTTEEEEECSCSHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC----CCC----cccccccccccCCcceecccCHHHHHHHHHh----c
Confidence 356788999999999999999999999997531 221 1234544322 5678888544433222221 1
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGAL 594 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~~~l 594 (715)
. -=|+|++|+|||+|.+.. -+.-||||.|++.-..+ ++..+..++++
T Consensus 271 --G-~~rVyeIg~~FR~E~~~~----rH~pEFtmlE~e~af~d~~dlm~l~E~li 318 (529)
T 4ex5_A 271 --G-FERVFEINRNFRNEGVSP----RHNPEFTMMEFYAAYTDYRWLMDFTERLI 318 (529)
T ss_dssp --T-CSEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred --C-CCcEEEeehheecCCCCC----CcccHhHhhhhhhhcCCHHHHHHHHHHHH
Confidence 1 249999999999998763 27899999999985444 44444444444
No 78
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.52 E-value=0.00058 Score=78.51 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHH-HcCcEEEecCcccchhhhhhhCcccccCCCceEEee--cCceEEEecCChHHHHHHHHhhhcc
Q psy10609 464 AFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 464 ~~l~~~L~~~i~~~~~-~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d--~~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
.+++.++...+++.|. +.||.+|.||.|.... ..|- .-|.+.. .+..++|+-..+-..-.+.. +
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st---~~GA------~~F~v~~~~~g~~~~L~qSpql~kq~l~v----~ 214 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT---PGGA------KEFLVPSREPGKFYSLPQSPQQFKQLLMV----G 214 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC---CSSS------CCCEEECSSTTCEEECCSSTTHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC---CCCC------cCceeccccCCcccccccCHHHHHHHHHh----c
Confidence 5778899999999996 7999999999997631 1121 1254433 25677887433322211111 1
Q ss_pred cCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCc-hhHHHHHH
Q psy10609 541 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIV 591 (715)
Q Consensus 541 ~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~-eqa~~E~~ 591 (715)
.+ =|+||+|+|||+|.+.. - |.-||||.|++.-..+ ++..+..+
T Consensus 215 --g~-~rvfqi~~~FR~E~~~t--~--r~pEFt~lE~e~af~d~~d~m~~~E 259 (617)
T 4ah6_A 215 --GL-DRYFQVARCYRDEGSRP--D--RQPEFTQIDIEMSFVDQTGIQSLIE 259 (617)
T ss_dssp --SC-SEEEEEEEEECCCSSCS--S--SCSEEEEEEEEEESCCHHHHHHHHH
T ss_pred --cc-CcEEEEEhheecccCCC--C--cCcceecceeeecCCCHHHHHHHHH
Confidence 12 39999999999998764 3 8899999999985443 34333333
No 79
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.07 E-value=0.0021 Score=72.60 Aligned_cols=84 Identities=17% Similarity=0.308 Sum_probs=60.3
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. .. . +.+||+|.++-+.+.+- .+..+....
T Consensus 192 ~svLRTsLlPGLL~~vr~N~-~r~~~pvrlFEiGrVFr~D~~~d~--t--h~~ef~qLaglv~G~~v----dF~DLKG~L 262 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLI-KKRKLPLKLFSIDRCFRREQREDR--S--HLMSYHSASCVVVGEDV----SVDDGKVVA 262 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTT-TTSCSSEEEEEEEEECCCCSSCSS--S--CCSCEEEEEEEEECTTC----CHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHH-hcCCCCeEEEEEeeEEecCCcccC--c--CCCcceEEEEEEECCCC----CHHHHHHHH
Confidence 46899999998766555332 345789999999999998763 32 2 45899999999998742 123356777
Q ss_pred HHHHHHcCcE-EEEE
Q psy10609 598 RNVYSIFGFT-FNLR 611 (715)
Q Consensus 598 ~~il~~LGl~-~~v~ 611 (715)
..+++.||+. ++++
T Consensus 263 e~ll~~LGi~~~rfr 277 (549)
T 2du7_A 263 EGLLAQFGFTKFKFK 277 (549)
T ss_dssp HHHHGGGTCCCCCCE
T ss_pred HHHHHHcCCCeEEEE
Confidence 8888888873 4443
No 80
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.91 E-value=0.0046 Score=70.54 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vd----F~DLKGvL 269 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 46899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (648)
T 2odr_B 270 EGLLSQFGFTNFKFIPD 286 (648)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 655543
No 81
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.89 E-value=0.0048 Score=70.52 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vd----F~DLKGvL 269 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 46899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (665)
T 2odr_A 270 EGLLSQFGFTNFKFIPD 286 (665)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 665543
No 82
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.89 E-value=0.0049 Score=70.56 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++..|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vD----F~DLKGvL 269 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEeccEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 46899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (685)
T 2odr_D 270 EGLLSQFGFTNFKFIPD 286 (685)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 665544
No 83
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.88 E-value=0.0052 Score=70.47 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=61.0
Q ss_pred eEEEecCChHHHHHHHHhhhcccCCCCeEEEEeccCcccCCC-CCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHH
Q psy10609 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 597 (715)
Q Consensus 519 ~l~LRPt~e~~~~~~~~~~~~s~~~LPlrl~~~g~~FR~E~~-~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~ 597 (715)
.-+||++.-|++....+... +.+..|+|++++|+|||.+.. ..+ ...||+|.++-+.+.+-. +..+....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~EfhqLeGlv~G~~vD----F~DLKGvL 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEEeeEEccCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 45899999997765554332 345789999999999997654 321 348999999999987421 23356777
Q ss_pred HHHHHHcCcE-EEEEEc
Q psy10609 598 RNVYSIFGFT-FNLRLS 613 (715)
Q Consensus 598 ~~il~~LGl~-~~v~l~ 613 (715)
..+++.||+. ++++-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (701)
T 2odr_C 270 EGLLSQFGFTNFKFIPD 286 (701)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 655543
No 84
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.86 E-value=0.0025 Score=68.04 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecCcccchh-hhhhh----CcccccCCCceEEeecCceEEEecCChHHHHHHHHhhhc
Q psy10609 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTS----GHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 465 ~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~e-l~~~s----G~~~~~~~emy~~~d~~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
.-...+.+.+++.|...||+++.+|.++... -|..- .|-..-..+.|.+. +..+||+.+.|.....+..
T Consensus 107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~---e~~vLRThtsp~~lr~l~~--- 180 (327)
T 3pco_A 107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD---TTRLLRTQTSGVQIRTMKA--- 180 (327)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS---SSCEECSCTHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC---CCceecccCCHHHHHHHHh---
Confidence 4456788888999999999999999986532 12211 11000001234342 3568999888887766542
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHc
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 604 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~L 604 (715)
+..|+|++++|+|||.+. .+ . .+.+|+|.+..+.+.+-. +..+......+++.|
T Consensus 181 --~~~pirifeiGrVyR~d~-d~--t--h~p~fhqlegl~v~~~v~----f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 181 --QQPPIRIIAPGRVYRNDY-DQ--T--HTPMFHQMEGLIVDTNIS----FTNLKGTLHDFLRNF 234 (327)
T ss_dssp --CCSSCCBCCEECCBCSCC-BT--T--BCSBCCEEEEEEEETTCC----HHHHHHHHHHHHHHH
T ss_pred --CCCCeeEEeeccEEecCC-Cc--c--cCCcccEEEEEEECCCCC----HHHHHHHHHHHHHHH
Confidence 468999999999999983 22 1 456799998777654321 222344555556655
No 85
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.51 E-value=0.026 Score=64.83 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhh-hhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRE 543 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el-~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~ 543 (715)
.+.+.+.+++.+...||+|+.|+.|...+. +..-+.-+. ..+.+.+.+. .+.-+||++.-|++....+... + +.
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~-~-~~ 469 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR-K-MP 469 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTT-T-SC
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHh-c-CC
Confidence 456788889999999999999999998773 333331111 1223333321 2335899999998887665443 2 34
Q ss_pred CCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchhHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 544 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 544 LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eqa~~E~~~~l~~~~~il~~LGl~ 607 (715)
.|+|++++|+|||.+.... . ..+|+.+..+.+.+.... +..+-.....+++.||++
T Consensus 470 ~~vrlFEiG~Vf~~d~~~~-~---~~~e~~~la~~~~g~~~~----f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 470 LPLKLFEISDIVIKDSNTD-V---GAKNYRHLCAVYYNKNPG----FEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp SCEEEEEEEEEEEECTTST-T---SEEEEEEEEEEEESSSCC----HHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEeeeEEecCCccc-c---CCccccEEEEEEECCCCC----HHHHHHHHHHHHHHcCCC
Confidence 7999999999999875433 1 247888888877665421 222345566778888875
No 86
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=96.04 E-value=0.074 Score=53.05 Aligned_cols=137 Identities=11% Similarity=0.173 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCCC
Q psy10609 468 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELP 545 (715)
Q Consensus 468 ~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~LP 545 (715)
+++.+.+++.+...||+||.|-.|...+.+..-+..+ .++...+.+. .+.-+||++.-|++....+... +.+.-+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~-~r~~~~ 83 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNA-NRKNAD 83 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------C
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccC--cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHh-cCCCCC
Confidence 4678888889999999999999999988665443211 1123333321 3345899999998877665433 233456
Q ss_pred eEEEEeccCcccCCCCCC--CCcceeeeEeEeeEEEEeCc--h-----hHHHHHHHHHHHHHHHHHHcCcE
Q psy10609 546 LRMADFGVLHRNELSGAL--TGLTRVRRFQQDDAHIFCTV--E-----QIGDEIVGALDFLRNVYSIFGFT 607 (715)
Q Consensus 546 lrl~~~g~~FR~E~~~~l--~GL~R~REFtq~d~~if~~~--e-----qa~~E~~~~l~~~~~il~~LGl~ 607 (715)
+|++++|+||+.+..... ..+-..+|..+..+-+-+.. + ....-+-.+....+.++..||++
T Consensus 84 v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 84 LKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp CEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred eeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999997653210 00013467777776665531 1 01122334566667777777765
No 87
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.97 E-value=0.028 Score=66.83 Aligned_cols=138 Identities=9% Similarity=0.026 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCC-ceEEeec--CceEEEecCChHHHHHHHHhhhc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN-MFSFDVE--NETYALKPMNCPGHCLIFDHRVR 539 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~e-my~~~d~--~~~l~LRPt~e~~~~~~~~~~~~ 539 (715)
+..-.+.+.+.+++.+...||+|+.|..|...+.+..-+ + ..+ .+.+.+. .+.-+||++.-|++....+...
T Consensus 491 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~- 565 (795)
T 2rhq_B 491 ELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNV- 565 (795)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHh-
Confidence 334466788889999999999999999999887552221 1 123 3444432 3345899999999887766433
Q ss_pred ccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-hHH------HHHHHHHHHHHHHHHHcCcEEEE
Q psy10609 540 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIG------DEIVGALDFLRNVYSIFGFTFNL 610 (715)
Q Consensus 540 s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-qa~------~E~~~~l~~~~~il~~LGl~~~v 610 (715)
+.+..|+|++++|+|||.+.... + . +||+|..+-+.+... ... .-+..+....+.+++.||+++++
T Consensus 566 ~r~~~~vrlFEiG~Vf~~d~~~~--~--~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~~ 638 (795)
T 2rhq_B 566 ARKNKDVRLYEIGRVFFGNGEGE--L--P-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSY 638 (795)
T ss_dssp HTTCCCEEEEEEEEEEECCCTTS--C--C-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCCCEE
T ss_pred cCCCCCeEEEEEeeEEecCCccc--C--c-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 34568999999999999644321 1 3 899999888877531 110 12344667788888888875433
No 88
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=95.77 E-value=0.15 Score=50.81 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCC
Q psy10609 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWREL 544 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~L 544 (715)
.+++.+.+++.+...||+||.|-.|.+.+.+..-+..+. ++..++.+. .+.-+||++--|++....+... +.+.-
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~--~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~-~r~~~ 82 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPR--EMAVELMNPLSQELNCMRQTLLFGGLETLSHNL-RRKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCG--GGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHH-TTTCS
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCc--CCeEEecCCccHHHHHHHHHhHHHHHHHHHHHH-cCCCC
Confidence 356788889999999999999999999886654332110 112222221 3445899999998877665433 23334
Q ss_pred CeEEEEeccCcccCCCCCC--CCcceeeeEeEeeEEEEeC
Q psy10609 545 PLRMADFGVLHRNELSGAL--TGLTRVRRFQQDDAHIFCT 582 (715)
Q Consensus 545 Plrl~~~g~~FR~E~~~~l--~GL~R~REFtq~d~~if~~ 582 (715)
++|++++|+||+.+..... ..+-..+|..+..+-+-+.
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~ 122 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQ 122 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEB
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCC
Confidence 5999999999997653210 0011347777777666664
No 89
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=95.56 E-value=0.0054 Score=71.75 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=70.4
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHh-hccCCCcEEEEeeCCcccccCCccccCcChh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILK-EKVNTPTTTAYRCGPLIDLCRGPHVRHTGKI 352 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~-e~~pi~~v~~y~~~~~~d~~~~p~~~~t~~~ 352 (715)
++.+++..++..|.++|+++.|+....++.++|.++++ .+++. ...+...+.+|.+|+++++|.|||+++|+..
T Consensus 640 lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~-----l~L~~~~~~~~d~VRVV~IGd~~elCGGTHV~nTgeI 714 (739)
T 2ztg_A 640 PSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFG-----FRLYQGGVPPGRKIRVVQVGDDVQACGGTHCRSTGEI 714 (739)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHC-----GGGGTTCCCCSSEEEEEEETTEEEECCSCCCSBGGGG
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhCC-----HhhhcCCCCCCCeEEEEEECCeeeCcCCcCcccHhHc
Confidence 55567788999999999999999999999999999885 34553 1224567899999999999999999999999
Q ss_pred hHHhhcccC
Q psy10609 353 KAFKVTKYN 361 (715)
Q Consensus 353 eA~eLf~~~ 361 (715)
.+|+|.+..
T Consensus 715 g~fkIls~s 723 (739)
T 2ztg_A 715 GMLKILKVE 723 (739)
T ss_dssp CCEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999998864
No 90
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=95.29 E-value=0.06 Score=63.84 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcc
Q psy10609 463 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 540 (715)
Q Consensus 463 G~~l~~~L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s 540 (715)
+..-.+.+.+.+++.+...||+|+.|-.|...+.+.. ++. ..+-+.+.+. .+.-+||++.-|++....+... +
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~---l~~-~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~-~ 561 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR---FRL-DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENL-D 561 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH---TTC-CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHH-H
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHh---cCC-CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHh-h
Confidence 3344667888899999999999999999998875532 211 1333444432 3345899999999887766433 3
Q ss_pred cC-CCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCchh-H-----HHHHHHHHHHHHHHHHHcCcEEEE
Q psy10609 541 WR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ-I-----GDEIVGALDFLRNVYSIFGFTFNL 610 (715)
Q Consensus 541 ~~-~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~eq-a-----~~E~~~~l~~~~~il~~LGl~~~v 610 (715)
.+ ..|+|++++|+||| + +|+.+..+-+.+.... . ..-+..+....+.+++.||+++++
T Consensus 562 r~~~~~vrlFEiG~Vf~-~-----------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~~~~ 626 (785)
T 1b7y_B 562 LDRPERALLFEVGRVFR-E-----------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAFRV 626 (785)
T ss_dssp HSCCSCEEEEEEEEEES-S-----------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCCCEE
T ss_pred cCCCCCeEEEEEeeeec-c-----------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCceEE
Confidence 34 58999999999999 2 7888888888776310 0 012334567777888888875444
No 91
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=94.62 E-value=0.27 Score=54.02 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHc--------CcEEEec-Ccccchh-hhhhhCc-cccc---CCCceEEeecCceEEEecCChHHHHH
Q psy10609 467 YNTLVEFIRSEYRKR--------GFQEVVS-PNVYNVK-LWQTSGH-WAHY---SENMFSFDVENETYALKPMNCPGHCL 532 (715)
Q Consensus 467 ~~~L~~~i~~~~~~~--------Gy~eV~t-P~L~~~e-l~~~sG~-~~~~---~~emy~~~d~~~~l~LRPt~e~~~~~ 532 (715)
...+.+.+++.|... ||+++.+ |.++... -|..-+. -++. ..+.|.+. +..+||..+.|....
T Consensus 50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~---~~~vLRThts~~~~~ 126 (415)
T 3cmq_A 50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN---RTHMLRAHTSAHQWD 126 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS---SSEEECSSGGGGHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEec---CCeEEcCCCcHHHHH
Confidence 345666666666665 9999998 7776544 3333221 0111 12334442 357899977777776
Q ss_pred HHHhhhcccCCCCeEEEEeccCcccCCCCCCCCcceeeeEeEeeEEEE
Q psy10609 533 IFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 580 (715)
Q Consensus 533 ~~~~~~~s~~~LPlrl~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if 580 (715)
.++. ..| |+...|.|||.+...+ . ...+|+|.+.-.+
T Consensus 127 ~l~~------~~~-k~~~~G~VyR~D~~da--~--h~n~fhQ~egv~l 163 (415)
T 3cmq_A 127 LLHA------GLD-AFLVVGDVYRRDQIDS--Q--HYPIFHQLEAVRL 163 (415)
T ss_dssp HHHT------TCS-EEEEEEEEECCCCCBT--T--BCSEEEEEEEEEE
T ss_pred HHHH------CCC-CEEEeeeEEeccchhh--h--hhHHhcCCCcEEE
Confidence 6543 236 9999999999996443 2 5688888886555
No 92
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.14 E-value=0.22 Score=42.75 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=45.3
Q ss_pred CcceEEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 35 GALNQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
+..++|++ +|+.+.....++|+.|+.+.+. +....+++-|||++.+- +.+|..+.+|+++
T Consensus 18 ~~~M~I~v-NGe~~el~~~~~Tv~dLL~~L~--~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 18 GGRHMLQL-NGKDVKWKKDTGTIQDLLASYQ--LENKIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp ----CEEE-TTEEECCSSSCCBHHHHHHHTT--CTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CcceEEEE-CCEEEECCCCCCcHHHHHHHhC--CCCCCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 34567888 8988887762289999999885 34456678899999876 5789999999998
No 93
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=90.75 E-value=0.4 Score=39.08 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred eEEEecCCcE----EeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 38 NQVTLPDGKI----VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|++ +|+. +.... ++|+.|+.+.+.. ....++.-|||++.+.+.+|..+.+|+++
T Consensus 5 m~i~v-Ng~~~~~~~~~~~-~~tv~~Ll~~l~~--~~~~v~vavN~~~v~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTV-ITDDGKKILESGA-PRRIKDVLGELEI--PIETVVVKKNGQIVIDEEEIFDGDIIEVI 64 (70)
T ss_dssp EEEEE-EETTEEEEEEESS-CCBHHHHHHHTTC--CTTTEEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEEEE-eCccCceeEECCC-CCcHHHHHHHhCC--CCCCEEEEECCEECCCcccCCCCCEEEEE
Confidence 56676 6665 66655 6899999998853 34556788999999999999999999998
No 94
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=90.56 E-value=0.45 Score=38.21 Aligned_cols=55 Identities=7% Similarity=0.139 Sum_probs=44.7
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEecc----ccccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDL----DRPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (715)
+|++ +|+.+.... ++|+.|+.+.+.. ....++.-|||+..+- +.+|..+.+|+++
T Consensus 2 ~i~v-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 2 QILF-NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp CEEE-SSCEECCCT-TCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred EEEE-CCEEEEcCC-CCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 4677 888888766 7899999998853 3556778899999876 7899999999988
No 95
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=88.58 E-value=0.84 Score=36.37 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=43.2
Q ss_pred EEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 40 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
|++ +|+.+.. . ++|+.|+.+.+.. ....++.-|||+..+.+ .+|..+.+|+++
T Consensus 2 i~v-Ng~~~~~-~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 2 VWL-NGEPRPL-E-GKTLKEVLEEMGV--ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EEE-TTEEECC-T-TCCHHHHHHHHTB--CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred EEE-CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 556 8888887 5 6999999998853 34566788999998866 899999999998
No 96
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.16 E-value=0.82 Score=39.16 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=42.3
Q ss_pred CCceeEEcCCCcEEecccCC-CCHHHHHhhhcccccCceEEEEEcCcccccC-C-ccccccCccccccC
Q psy10609 210 PEEIQVTLPDGKIVPAKSWR-TTPYDVAAGISKGLADSTIIAKDWTRANKSR-G-NELCESSQYFSLVS 275 (715)
Q Consensus 210 ~~~I~I~lpdG~~~~~~~~~-tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld-l-~~~i~~~~~ve~It 275 (715)
+.+|+|++ +|+.++++. + +|+.|+.+.++ +...-||+.||+++.+.+ . .+.+.+.+.++++.
T Consensus 18 ~~~M~I~v-NGe~~el~~-~~~Tv~dLL~~L~--~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 18 GGRHMLQL-NGKDVKWKK-DTGTIQDLLASYQ--LENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ----CEEE-TTEEECCSS-SCCBHHHHHHHTT--CTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CcceEEEE-CCEEEECCC-CCCcHHHHHHHhC--CCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 34567777 678888887 6 99999999875 344556788999987632 1 24566667777765
No 97
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=84.12 E-value=0.93 Score=37.51 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=41.0
Q ss_pred eEEEecCCcE---EeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 38 NQVTLPDGKI---VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 38 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|++- |.. +..+. ++|+.|+.+.+.- ....+++.|||+..+.+++++ +.+++++
T Consensus 3 v~Vkl~-g~~~~~~ev~~-g~Tv~dLL~~Lgl--~~~~VvV~vNG~~v~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 3 VTVEVV-GEETSEVAVDD-DGTYADLVRAVDL--SPHEVTVLVDGRPVPEDQSVE-VDRVKVL 60 (74)
T ss_dssp EEEECS-SSSEEEEECST-TCSHHHHHHTTCC--CSSCCCEECCCCCCCTTSSSC-CCCEEEC
T ss_pred EEEEEe-CccceeEEcCC-CCcHHHHHHHcCC--CcceEEEEECCEECCHHHCCC-CCEEEEE
Confidence 455553 443 55554 7899999998864 344457899999999999987 6789988
No 98
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=83.10 E-value=1.3 Score=37.09 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=43.6
Q ss_pred EEEecCCcEEeee--cCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 39 QVTLPDGKIVPAK--SWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
+|++ +|+.+... . ++|+.++.+.+.-.- ...++..|||++.+-+ .+|..+.+|+++
T Consensus 2 ~I~v-NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 2 NLTV-NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEEE-TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEE-CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 5777 88888776 5 689999999875320 3445678999998775 789999999998
No 99
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=82.98 E-value=1.3 Score=36.48 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=42.9
Q ss_pred EEEecCCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccc----cccccCcceeee
Q psy10609 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLD----RPLETNCKLELL 97 (715)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (715)
+|++ +|+.+.. . ++|+.++.+.+.- ....++..|||++.+-+ .+|..+.+|+++
T Consensus 2 ~I~v-NG~~~e~-~-~~Tl~~LL~~l~~--~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 2 LVTI-NGEQREV-Q-SASVAALMTELDC--TGGHFAVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp CEEE-TTEEECC-C-CSBHHHHHHHTTC--CSSSCEEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred EEEE-CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 5677 7888887 4 6999999998753 34556788999987764 689999999998
No 100
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=82.05 E-value=0.44 Score=41.41 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=35.5
Q ss_pred CCCHHHHHHhhhcCCc-------------CceEEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLA-------------DSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+..... .+.++..|||+.++++.+|..+..|.++
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 5788998888764321 2557889999999999999999999988
No 101
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=81.43 E-value=4.8 Score=34.84 Aligned_cols=52 Identities=29% Similarity=0.190 Sum_probs=43.0
Q ss_pred EeeecCCCCHHHHHHhhhcCCcCceEEEEE-------cCEEeccccccccCcceeeecc
Q psy10609 48 VPAKSWRTTPYDVAAGISKGLADSTIIAKV-------NGVLWDLDRPLETNCKLELLNK 99 (715)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 99 (715)
+.....++|+.|+|..|...+.+.+.-|.| ||+-..|+..|...--|+++.+
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 444233899999999999999999877776 9999999999997777888843
No 102
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=79.28 E-value=1.7 Score=35.98 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCcEEeeecCCCCHHHHHHhhhcCCcCceEEEEEcCEEeccccccccCcceeee
Q psy10609 44 DGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
+|..+.... ++|+.|+.+.+... ...++..|||++.+.+.+|..+..|+++
T Consensus 21 n~~~~~~~~-~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 21 IEKEIEWRE-GMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCCCCS-SCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCS
T ss_pred CCEEEECCC-CCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEE
Confidence 455555544 68999999987633 3455788999999999999999999988
No 103
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=78.06 E-value=5.3 Score=47.36 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCcEEEecCcccchhhhhhhCcccccCCCceEEeec--CceEEEecCChHHHHHHHHhhhcccCCCCeE
Q psy10609 470 LVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELPLR 547 (715)
Q Consensus 470 L~~~i~~~~~~~Gy~eV~tP~L~~~el~~~sG~~~~~~~emy~~~d~--~~~l~LRPt~e~~~~~~~~~~~~s~~~LPlr 547 (715)
+.+.+++.+...||+|+.|-.|.+.+....-+. .++...+.+. .+.=+||++--|++....+... +.+.-++|
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~----~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~-~r~~~~v~ 568 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHP----GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQ-NRQQNRVR 568 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSS----SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHH-TSSCCCCE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCC----CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHH-hCCCCCcc
Confidence 456677888899999999999999887655441 1122222221 2334799999998877665433 34456899
Q ss_pred EEEeccCcccCCCCCCCCcceeeeEeEeeEEEEeCch-h------HHHHHHHHHHHHHHHHHHcCc
Q psy10609 548 MADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-Q------IGDEIVGALDFLRNVYSIFGF 606 (715)
Q Consensus 548 l~~~g~~FR~E~~~~l~GL~R~REFtq~d~~if~~~e-q------a~~E~~~~l~~~~~il~~LGl 606 (715)
+|++|+||+.+.... . ..+|..+..+-+-+... . ...-+-.+....+.++..||+
T Consensus 569 lFEiG~Vf~~~~~~~-~---~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 569 IFESGLRFVPDTQAP-L---GIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEEEECTTSS-T---TEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred EEEeeeEEecCCCcc-c---CcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999998765432 1 23666666665555321 0 011233456777888888886
No 104
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=77.30 E-value=1.4 Score=36.81 Aligned_cols=61 Identities=5% Similarity=0.060 Sum_probs=42.4
Q ss_pred eeEEcCCCcEEecc--cCCCCHHHHHhhhcccccCceEEEEEcCcccccCC--ccccccCccccccCC
Q psy10609 213 IQVTLPDGKIVPAK--SWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRG--NELCESSQYFSLVST 276 (715)
Q Consensus 213 I~I~lpdG~~~~~~--~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl--~~~i~~~~~ve~It~ 276 (715)
|+|++ +|+.++++ . ++|+.+++.+.+... ..-||..+|+++.+-+- .+.+.+.+.+++++.
T Consensus 1 M~I~v-NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 1 MNLTV-NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp CEEEE-TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred CEEEE-CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 35666 67888887 6 899999999875331 44457889999886321 245677777887764
No 105
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=77.18 E-value=2 Score=35.39 Aligned_cols=59 Identities=5% Similarity=0.043 Sum_probs=41.3
Q ss_pred eeEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 213 I~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
|+|++ +|+.+++ . ++|+.+++++.+. +..-||..+|+++.+-+ ..+.+.+.+.+++++.
T Consensus 1 M~I~v-NG~~~e~-~-~~Tl~~LL~~l~~--~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 1 MLVTI-NGEQREV-Q-SASVAALMTELDC--TGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp CCEEE-TTEEECC-C-CSBHHHHHHHTTC--CSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECC
T ss_pred CEEEE-CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECChHHcCcccCCCCCEEEEEcc
Confidence 34555 5778888 5 8999999998653 44556788999987632 1245667777777764
No 106
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=74.95 E-value=2.8 Score=33.45 Aligned_cols=59 Identities=5% Similarity=0.081 Sum_probs=40.8
Q ss_pred eEEcCCCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 214 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 214 ~I~lpdG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
+|++ +|+.++++. ++|+.++.+..+. ...-++..||++..+.+ ..+.+.+.+.++++..
T Consensus 2 ~i~v-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 2 QILF-NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CEEE-SSCEECCCT-TCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred EEEE-CCEEEEcCC-CCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 4555 678888887 8999999998753 45556788999987521 1345666666766643
No 107
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=70.93 E-value=4.9 Score=31.81 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=38.7
Q ss_pred CCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccC--CccccccCccccccCC
Q psy10609 219 DGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSR--GNELCESSQYFSLVST 276 (715)
Q Consensus 219 dG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ld--l~~~i~~~~~ve~It~ 276 (715)
+|+.+++ . ++|+.++.+.++. ...-++..+|++..+.+ ..+.+.+.+.++++..
T Consensus 5 Ng~~~~~-~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPRPL-E-GKTLKEVLEEMGV--ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEECC-T-TCCHHHHHHHHTB--CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 6778888 5 8999999998753 34556788999988643 2345666677777653
No 108
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=70.86 E-value=5.6 Score=32.73 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=38.9
Q ss_pred ceeEEcCCCcE---EecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 212 EIQVTLPDGKI---VPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 212 ~I~I~lpdG~~---~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
.|+|++. |.. .+++. |+|+.|++++++.... -|++.+||+..+.| ...+ .+.+++++.
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~-g~Tv~dLL~~Lgl~~~--~VvV~vNG~~v~~d--~~l~-GD~VeIv~~ 62 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDD-DGTYADLVRAVDLSPH--EVTVLVDGRPVPED--QSVE-VDRVKVLRL 62 (74)
T ss_dssp EEEEECS-SSSEEEEECST-TCSHHHHHHTTCCCSS--CCCEECCCCCCCTT--SSSC-CCCEEECSS
T ss_pred EEEEEEe-CccceeEEcCC-CCcHHHHHHHcCCCcc--eEEEEECCEECCHH--HCCC-CCEEEEEEe
Confidence 3667776 444 67887 9999999999764333 33688999988643 3333 556666543
No 109
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=70.04 E-value=4.7 Score=32.61 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=39.7
Q ss_pred ceeEEcCCCcE----EecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 212 EIQVTLPDGKI----VPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 212 ~I~I~lpdG~~----~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
.|+|++. |+. ++++. ++|+.++.+..+. +..-++..+|++..+.+ ..+.+.+.++++..
T Consensus 4 ~m~i~vN-g~~~~~~~~~~~-~~tv~~Ll~~l~~--~~~~v~vavN~~~v~~~--~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVI-TDDGKKILESGA-PRRIKDVLGELEI--PIETVVVKKNGQIVIDE--EEIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEE-ETTEEEEEEESS-CCBHHHHHHHTTC--CTTTEEEEETTEECCTT--SBCCTTCEEEEEEC
T ss_pred eEEEEEe-CccCceeEECCC-CCcHHHHHHHhCC--CCCCEEEEECCEECCCc--ccCCCCCEEEEEec
Confidence 3566663 333 77776 8999999998753 34446788999987642 45666666766643
No 110
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=57.37 E-value=20 Score=30.94 Aligned_cols=54 Identities=26% Similarity=0.201 Sum_probs=39.1
Q ss_pred Eec-ccCCCCHHHHHhhhcccccCceEEEEEcCcccc-----cCCccccccCccccccCCC
Q psy10609 223 VPA-KSWRTTPYDVAAGISKGLADSTIIAKDWTRANK-----SRGNELCESSQYFSLVSTL 277 (715)
Q Consensus 223 ~~~-~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~-----ldl~~~i~~~~~ve~It~~ 277 (715)
+-+ +. |+|+.|+|..|...+.+....|.|||.-.. +-+++.+.+.+.+++++..
T Consensus 29 viL~~~-GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 29 VVLPYS-RTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp EEEETT-SCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECC
T ss_pred EEEecC-CCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCC
Confidence 445 55 999999999999999999999999764321 1234566666667777643
No 111
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=54.08 E-value=11 Score=30.68 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCCHHHHHHhhhcCC-------cCceEEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGL-------ADSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+.... ....++.-|||+..+++.+|..+..|.++
T Consensus 25 ~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 25 FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEe
Confidence 578889888876432 22345788999999999999999999988
No 112
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=53.89 E-value=9.4 Score=31.35 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=38.4
Q ss_pred CCcEEecccCCCCHHHHHhhhcccccCceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 219 DGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 219 dG~~~~~~~~~tT~~dia~~i~~~~~~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
+|..++++. ++|+.|+.+.++.. ..-++..||++..+. .+.+.+.+.|+++..
T Consensus 21 n~~~~~~~~-~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~--~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 21 IEKEIEWRE-GMKVRDILRAVGFN--TESAIAKVNGKVVLE--DDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCCCS-SCCHHHHHHTTTCS--SCSSCEEETTEEECS--SSCCCSSCCCBCSCC
T ss_pred CCEEEECCC-CCcHHHHHHHhCCC--CcCEEEEECCEECCC--CCCcCCCCEEEEEcc
Confidence 556666666 89999999987643 344577899998864 366777777877754
No 113
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=51.86 E-value=14 Score=30.88 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=34.2
Q ss_pred CCCHHHHHHhhhcCCcC-------------ceEEEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLAD-------------STIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+...... +.+..-|||+.++++.+|..+..|.++
T Consensus 27 ~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 27 DATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp TCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEE
T ss_pred CCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEE
Confidence 46888888877643321 236778999999999999999999988
No 114
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=49.41 E-value=10 Score=30.74 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=34.0
Q ss_pred CCCHHHHHHhhhcCCcC-ceE--EEEEcCEEeccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLAD-STI--IAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+....+. ..+ +.-|||+..+.+.+|..+..|+++
T Consensus 25 ~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 25 ALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALI 71 (77)
T ss_dssp CEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEE
T ss_pred CCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEE
Confidence 46888888877644221 223 678999999999999999999998
No 115
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=47.77 E-value=19 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=35.0
Q ss_pred CCCHHHHHHhhhcCC--cC--ceEEEEEcCEE-eccccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGL--AD--STIIAKVNGVL-WDLDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+.... +. ..++.-|||+. .+.+.+|..+..|.++
T Consensus 20 ~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 20 ANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred CCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 689999998887532 11 45677899988 7899999999999988
No 116
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=37.42 E-value=7.9 Score=39.11 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=65.6
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcChhHHHHHhhccCCCcEEEEeeCCc-ccccCCccccCcChh
Q psy10609 274 VSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL-IDLCRGPHVRHTGKI 352 (715)
Q Consensus 274 It~~d~~gLe~lm~~aV~~l~P~~r~~vs~eda~~If~~~~~m~eLI~e~~pi~~v~~y~~~~~-~d~~~~p~~~~t~~~ 352 (715)
++.+++..++..|.++|+++.|.....++.++|.++.. . . +.+ + ....+.+|.+|+| +++|-||++++|+..
T Consensus 134 lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~---~-~-~~e-~-~~~~VRvv~ig~~~~~~CgGtHV~~TgeI 206 (241)
T 3kew_A 134 LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKT---R-R-ALP-K-TDEEIRIVEIVGLDLNACCGVHPRNTRDL 206 (241)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCC---S-S-CCC-C-CSSCCCEEEETTTEEEECCSCCCSBSGGG
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcCh---h-h-cCC-c-cCCcEEEEEECCeEEEcCCCCCcCCHhhc
Confidence 56677888999999999999999998999999887653 1 1 111 1 2346778999998 899999999999999
Q ss_pred hHHhhcccC
Q psy10609 353 KAFKVTKYN 361 (715)
Q Consensus 353 eA~eLf~~~ 361 (715)
.+|+|.+..
T Consensus 207 g~fkI~~~~ 215 (241)
T 3kew_A 207 QVIKIRRWE 215 (241)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999998864
No 117
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=37.31 E-value=33 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCHHHHHHhhhcCCc-------------CceEEEEEcCEEec----cccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLA-------------DSTIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
++|+.++.+.+..... .+.++..|||+.++ ++.+|..+..|.++
T Consensus 24 ~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 24 ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 5799999888764421 14567889999886 79999999899988
No 118
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=34.62 E-value=25 Score=30.48 Aligned_cols=48 Identities=13% Similarity=-0.056 Sum_probs=36.5
Q ss_pred eeecCCCCHHHHHHhhhcCCc-----CceEEEEEcCEEeccccccccCcceeee
Q psy10609 49 PAKSWRTTPYDVAAGISKGLA-----DSTIIAKVNGVLWDLDRPLETNCKLELL 97 (715)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
.... ++|+.|+.+..+-... -..++.-|||+..+++++|..+..||++
T Consensus 31 ~v~~-g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 31 QVDE-GITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp EEET-TCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEEC
T ss_pred EcCC-CCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEE
Confidence 3444 7999999887653111 1245678999999999999999999998
No 119
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=32.47 E-value=12 Score=37.15 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCC---ce-----------------eecCHHHHHHHHhcChhHHHHHhhccCCCc-----EEEEeeCCc
Q psy10609 283 EGLMKDIVKEKQPF---ER-----------------LEMKKEDLIEMFKYNPFKLRILKEKVNTPT-----TTAYRCGPL 337 (715)
Q Consensus 283 e~lm~~aV~~l~P~---~r-----------------~~vs~eda~~If~~~~~m~eLI~e~~pi~~-----v~~y~~~~~ 337 (715)
.++|..|+++.++. .. ..++.+ +.+|++ .|.++|+++.|+.. +.++.+|+|
T Consensus 102 ~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~---~vn~~I~~~~pv~~~~~~~vRvv~ig~~ 177 (216)
T 2e1b_A 102 LHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIIS---LFNKYVDEGGEVKIWWEGDRRYTQIRDF 177 (216)
T ss_dssp HHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHH---HHHHHHHHCCBEEEEESSSCEEEEETTS
T ss_pred HHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHH---HHHHHHhcCCCEEEEEcCCEEEEEECCE
Confidence 56777777766654 11 125554 777777 77778877776543 468899998
Q ss_pred -ccccCCccccCcChhhHHhhcccC
Q psy10609 338 -IDLCRGPHVRHTGKIKAFKVTKYN 361 (715)
Q Consensus 338 -~d~~~~p~~~~t~~~eA~eLf~~~ 361 (715)
+++|-|||+++|+...+|++.+..
T Consensus 178 ~~~~CgGtHV~~TgeIg~fkI~~~~ 202 (216)
T 2e1b_A 178 EVIPCGGTHVKDIKEIGHIKKLKRS 202 (216)
T ss_dssp CEECCCSCCCSBGGGTCCEEEEEEE
T ss_pred EEECCCCCCcccHhhCceEEEEEEe
Confidence 899999999999999999998853
No 120
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=32.35 E-value=37 Score=29.41 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=23.3
Q ss_pred cCCCceeEEc--CCCcE--EecccCCCCHHHHHhhhc
Q psy10609 208 KVPEEIQVTL--PDGKI--VPAKSWRTTPYDVAAGIS 240 (715)
Q Consensus 208 ~~~~~I~I~l--pdG~~--~~~~~~~tT~~dia~~i~ 240 (715)
|++++++|++ ++|+. ++++. |.|+++.|...+
T Consensus 1 m~~~m~~v~~~~~~g~~~~~~~~~-g~tlL~aa~~~g 36 (109)
T 2y5c_A 1 MASDVVNVVFVDRSGQRIPVSGRV-GDNVLHLAQRHG 36 (109)
T ss_dssp --CCEEEEEEECTTSCEEEEEEET-TCBHHHHHHHTT
T ss_pred CCCCcEEEEEEcCCCCEEEEEECC-CCcHHHHHHHcC
Confidence 4455677777 78986 67776 999999998743
No 121
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=30.83 E-value=71 Score=26.22 Aligned_cols=54 Identities=6% Similarity=-0.093 Sum_probs=34.8
Q ss_pred EEecccCCCCHHHHHhhhccccc-------------CceEEEEEcCccccc--CCccccccCccccccCC
Q psy10609 222 IVPAKSWRTTPYDVAAGISKGLA-------------DSTIIAKDWTRANKS--RGNELCESSQYFSLVST 276 (715)
Q Consensus 222 ~~~~~~~~tT~~dia~~i~~~~~-------------~~ivaA~Vn~~~~~l--dl~~~i~~~~~ve~It~ 276 (715)
..+++. ++|+.++.+.+...++ .+-++..||++..+. ..++.+.+.+.+.++..
T Consensus 18 ~~~~~~-~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNG-ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESS-CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEcCC-CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 444554 7899999988765542 134578899987742 23456666666776653
No 122
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=30.66 E-value=60 Score=27.11 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCCHHHHHHhhhcCCc-------C--------ceEEEEEcCEEec----cccccccCcceeee
Q psy10609 54 RTTPYDVAAGISKGLA-------D--------STIIAKVNGVLWD----LDRPLETNCKLELL 97 (715)
Q Consensus 54 ~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 97 (715)
++|+.|+.+.+...+. + +.+...|||+.++ ++.||..+..|.++
T Consensus 25 ~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 25 GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 5799999888764321 1 2478889999988 79999999899887
No 123
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=28.08 E-value=1.4e+02 Score=25.52 Aligned_cols=61 Identities=23% Similarity=0.228 Sum_probs=41.4
Q ss_pred ceEEEecCCcEEeeec-CCCCHHHHHHhhh--cCCcCceEEEEEcCEEecccccc-----ccCcceeee
Q psy10609 37 LNQVTLPDGKIVPAKS-WRTTPYDVAAGIS--KGLADSTIIAKVNGVLWDLDRPL-----ETNCKLELL 97 (715)
Q Consensus 37 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 97 (715)
.+.|-.++|....++- ..+|+.||...-- -++..+--.-+-|++..||+-|+ ..||+||++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEE
Confidence 5777888886433332 3678888865432 12333334567899999999884 778999998
No 124
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=20.83 E-value=73 Score=27.00 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=34.6
Q ss_pred ecccCCCCHHHHHhhhccccc-------------CceEEEEEcCcccccCCccccccCccccccCC
Q psy10609 224 PAKSWRTTPYDVAAGISKGLA-------------DSTIIAKDWTRANKSRGNELCESSQYFSLVST 276 (715)
Q Consensus 224 ~~~~~~tT~~dia~~i~~~~~-------------~~ivaA~Vn~~~~~ldl~~~i~~~~~ve~It~ 276 (715)
+++. ++|+.|+...+...++ .+.++..||++..+. ++.+.+.+.|.++..
T Consensus 32 e~~~-~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~--~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 32 ELPE-GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW--DEELKDGDVVGVFPP 94 (98)
T ss_dssp EECT-TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT--TCBCCTTCEEEEESC
T ss_pred ECCC-CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC--CCCCCCCCEEEEECC
Confidence 3444 7899999888765432 255788899998753 567777777777654
Done!