RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10609
(715 letters)
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 567 bits (1465), Expect = 0.0
Identities = 162/417 (38%), Positives = 234/417 (56%), Gaps = 38/417 (9%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYN--PFKLRILKEKV-NTPTTTAYRC 334
D +E M ++ ++ + ++ + E F +K+ IL E + + Y
Sbjct: 116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFH 175
Query: 335 GPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHN 394
+D+CRGPHV + FK+ K
Sbjct: 176 EEYVDMCRGPHVPNMRFCHHFKLMKT---------------------------------- 201
Query: 395 SSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSP 454
+ YW G ++ + LQR+YG ++ D K L + + EEAAKRDHRKIG++ +L+ E +P
Sbjct: 202 AGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAP 261
Query: 455 GSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 514
G F+ G I+ L F+RS+ ++ +QEV P + + LW+ +GHW +Y + MF+
Sbjct: 262 GMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS 321
Query: 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ 574
EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG HRNE SG+L GL RVR F Q
Sbjct: 322 SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQ 381
Query: 575 DDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQL 633
DDAHIFCT EQI DE+ G + + ++YS FGF ++LSTRPEK +G E+W++AE L
Sbjct: 382 DDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADL 441
Query: 634 EASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
+L P+ G+GAFYGPKI+ T+ D L R QC T+QLDF LP R + +YV
Sbjct: 442 AVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYV 498
Score = 118 bits (299), Expect = 6e-28
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 54/166 (32%)
Query: 39 QVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
+TLPDG +P DVA I GLA + I +VNG L D +E + +L +
Sbjct: 3 VITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSI 59
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ +EE + HS AH+LG
Sbjct: 60 I--------------------------------------TAKDEEGLEIIRHSCAHLLGH 81
Query: 157 AMERVYGGC-LCYGPPIENGFYYDMYLDG----------EAQMERI 191
A+++++ + GP I+NGFYYD+ LD E +M +
Sbjct: 82 AIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHEL 127
Score = 41.8 bits (99), Expect = 8e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 213 IQVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAK 251
+TLPDG +P DVA I GLA + I +
Sbjct: 2 PVITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGR 39
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 556 bits (1434), Expect = 0.0
Identities = 154/421 (36%), Positives = 226/421 (53%), Gaps = 42/421 (9%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL 337
DF +E MK IV E ER + +++ E+F + +KL ++ T Y G
Sbjct: 118 DFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF 177
Query: 338 IDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHNSST 397
DLCRG HV T KIK FK+ +
Sbjct: 178 TDLCRGVHVPSTAKIKEFKLLST----------------------------------AGA 203
Query: 398 YWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFH-ELSPGS 456
YW G ++ + LQR+YG +F D K+LK ++ EE +RDHRKIG+E ELF + G
Sbjct: 204 YWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGL 263
Query: 457 CFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-- 514
+ P GA I + +I + G+ V +P + NV L++TSGHW HY E+MF
Sbjct: 264 PLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQL 323
Query: 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ 574
E E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G +HR E SGA++GL RVR
Sbjct: 324 DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTL 383
Query: 575 DDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTR----PEKYLGELEVWNKA 629
+D+HIF +QI +E ++ + +VY FGF ++ RLS R EKY + ++WNKA
Sbjct: 384 NDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKA 443
Query: 630 EKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAY 689
E L+ + + G + E G+ AFYGPK+D+ + A+ + +T QLDF LP RF+L Y
Sbjct: 444 ENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTY 503
Query: 690 V 690
+
Sbjct: 504 I 504
Score = 119 bits (300), Expect = 4e-28
Identities = 48/166 (28%), Positives = 65/166 (39%), Gaps = 54/166 (32%)
Query: 39 QVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
+ PDG TT D+A IS GL + K NG L DL +PLET+ +E+
Sbjct: 5 NIQFPDGNKKAFDKG---TTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEI 61
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ +EEA V HSTAH++
Sbjct: 62 V--------------------------------------TPGSEEALEVLRHSTAHLMAH 83
Query: 157 AMERVYGGC-LCYGPPIENGFYYDMYLDG----------EAQMERI 191
A++R+YG GP IE GFYYD +D E M++I
Sbjct: 84 AIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQI 129
Score = 43.3 bits (103), Expect = 2e-04
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 211 EEIQVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAK 251
E+I + PDG TT D+A IS GL + K
Sbjct: 2 EQINIQFPDGNKKAFDKG---TTTEDIAQSISPGLRKKAVAGK 41
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 545 bits (1406), Expect = 0.0
Identities = 144/298 (48%), Positives = 188/298 (63%), Gaps = 16/298 (5%)
Query: 408 LQRVYGISFPDNKQLKEWEKLQEEAAKRDHRK-IGREQELFFFHELSPGSCFFQPKGAFI 466
G+ P + K A + + Q+LF LSPGS FF P GA I
Sbjct: 8 HHHSSGLV-PRGSHMASATKNASSATPATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKI 66
Query: 467 YNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF---DVENETYAL 522
+N L+EF++ + + K GF EVV+P +Y LW+ SGHW +Y+++MF D E E Y L
Sbjct: 67 FNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGL 126
Query: 523 KPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 582
KPMNCPGHCLIF + RS+ ELPLR +DF LHRNE SGAL+GLTR+R+F QDD HIFCT
Sbjct: 127 KPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCT 186
Query: 583 VEQIGDEIVGALDFLRNVYS-IFGFT---------FNLRLSTRPEKYLGELEVWNKAEKQ 632
Q+ EI +L + VY+ IF F + + STRP+ ++G+L+VWN AE+
Sbjct: 187 PSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQV 246
Query: 633 LEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
L+ L G+PW NPGDGAFYGPK+DI +TD L++ HQ ATIQLDFQLP RF+L +
Sbjct: 247 LKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFK 304
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 450 bits (1161), Expect = e-154
Identities = 126/257 (49%), Positives = 172/257 (66%), Gaps = 1/257 (0%)
Query: 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
RDHRKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + +
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60
Query: 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 554
LW+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG
Sbjct: 61 VLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSC 120
Query: 555 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613
HRNE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LS
Sbjct: 121 HRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLS 180
Query: 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673
TRPEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC
Sbjct: 181 TRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240
Query: 674 TIQLDFQLPIRFNLAYV 690
T+QLDF LP R + +YV
Sbjct: 241 TVQLDFSLPSRLSASYV 257
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 414 bits (1067), Expect = e-139
Identities = 94/299 (31%), Positives = 143/299 (47%), Gaps = 24/299 (8%)
Query: 414 ISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEF 473
++ +K ++ + K D R +E F G F G I L E
Sbjct: 1 MASGQDKTHIDYAYELDITVKPDSRVPVFNREFATFT--GAGVPLFSLGGGPIRYALAEV 58
Query: 474 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLI 533
+ + +RG+ V +P + + +L++ SGH Y NM+ FD+E +A+KPMNCP H L+
Sbjct: 59 LAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILL 118
Query: 534 FDHRVRSWR---ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 590
F + V R LP ++ +FG +HR E SG++ GL RVR F QDDAHI ++ D +
Sbjct: 119 FLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVV 178
Query: 591 VGALDFLRNVYSI---FGFT---FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNS 639
+ ++ V G + F +RLS ++++G E W AE+ L + +
Sbjct: 179 YDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASR 238
Query: 640 FGEP----WTENPGDGAFYGPKIDITIT---DALKRPHQCATIQLDFQLPIRFNLA-YV 690
E E G+ AFYGPK+D + + + Q TIQ DF LP RF L V
Sbjct: 239 INEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVV 297
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 242 bits (620), Expect = 5e-75
Identities = 47/264 (17%), Positives = 83/264 (31%), Gaps = 39/264 (14%)
Query: 418 DNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQ----------------- 460
+ L + + ++ G + E+ F LS F
Sbjct: 6 RDPPLSSFWTKVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLR 65
Query: 461 -PKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHY-SENMFSFDVEN 517
K L E + ++GF +VV+P + + + H +F D
Sbjct: 66 TVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLD--- 122
Query: 518 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDA 577
L+PM P ++ R + P+R+ + G +R E GA + F +
Sbjct: 123 GKKCLRPMLAPNLYTLWRELERL-WDKPIRIFEIGTCYRKESQGAQ----HLNEFTMLNL 177
Query: 578 HIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASL 637
T + + + D R V G L T G + + + LE +
Sbjct: 178 TELGTPLEERHQRL--EDMARWVLEAAGIR-EFELVTESSVVYG--DTVDVMKGDLELAS 232
Query: 638 NSFG-----EPW-TENPGDGAFYG 655
+ G E W +P G +G
Sbjct: 233 GAMGPHFLDEKWEIFDPWVGLGFG 256
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 164 bits (417), Expect = 6e-44
Identities = 44/317 (13%), Positives = 92/317 (29%), Gaps = 53/317 (16%)
Query: 424 EWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEY-RKRG 482
W++ E ++ +E + S G P+ A I+ T + + E G
Sbjct: 191 LWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLG 250
Query: 483 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSF----------------------------- 513
++E++ P + ++W SGH ++
Sbjct: 251 YREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLI 310
Query: 514 --DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRR 571
+ + CP + E+P+++ D SG + G+ RV
Sbjct: 311 KEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDE 370
Query: 572 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEK 631
F + + T E++ D ++++ R + ++ + + AE+
Sbjct: 371 FHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILD-IEWRKARVTPWFMAQEGLLGLAEE 429
Query: 632 QLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVK 691
+ + E + D Q +I D P FN+
Sbjct: 430 NTVGTTDY--EAC-------------LPYRGPDGEWLEFQNVSINGDKY-PKGFNVKLQS 473
Query: 692 NVRAQTH----ELPRTL 704
+ L R
Sbjct: 474 GDELWSGCSGVGLERWA 490
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, ligase; NMR {Homo sapiens}
Length = 88
Score = 115 bits (291), Expect = 4e-31
Identities = 49/72 (68%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELLN 98
+VTLPDGK V A+SW+TTPY +A GIS+GLAD+T+IAKVN V+WDLDRPLE +C LELL
Sbjct: 13 KVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELL- 71
Query: 99 KFDNEEASSVFW 110
KF++EEA +V+
Sbjct: 72 KFEDEEAQAVYS 83
Score = 74.6 bits (184), Expect = 1e-16
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 203 EEIAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
++ + I+VTLPDGK V A+SW+TTPY +A GIS+GLAD+T+IAK
Sbjct: 2 SSGSSGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAK 50
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 120 bits (303), Expect = 4e-31
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 54/166 (32%)
Query: 39 QVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLEL 96
+TLPDG +P DVA I GLA + I +VNG L D +E + +L +
Sbjct: 3 VITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSI 59
Query: 97 LNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGE 156
+ +EE + HS AH+LG
Sbjct: 60 I--------------------------------------TAKDEEGLEIIRHSCAHLLGH 81
Query: 157 AMERVYGGC-LCYGPPIENGFYYDMYLDG----------EAQMERI 191
A+++++ + GP I+NGFYYD+ LD E +M +
Sbjct: 82 AIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHEL 127
Score = 102 bits (257), Expect = 7e-25
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 37/142 (26%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYN--PFKLRILKEKV-NTPTTTAYRC 334
D +E M ++ ++ + ++ + E F +K+ IL E + + Y
Sbjct: 116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFH 175
Query: 335 GPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHN 394
+D+CRGPHV + FK+ K
Sbjct: 176 EEYVDMCRGPHVPNMRFCHHFKLMKT---------------------------------- 201
Query: 395 SSTYWEGKADAESLQRVYGISF 416
+ YW G ++ + LQR+YG ++
Sbjct: 202 AGAYWRGDSNNKMLQRIYGTAW 223
Score = 43.6 bits (104), Expect = 8e-05
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 213 IQVTLPDGKI--VPAKSWRTTPYDVAAGISKGLADSTIIAK 251
+TLPDG +P DVA I GLA + I +
Sbjct: 2 PVITLPDGSQRHYDHA---VSPMDVALDIGPGLAKACIAGR 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-10
Identities = 78/531 (14%), Positives = 145/531 (27%), Gaps = 203/531 (38%)
Query: 40 VTLPDGKI-----VPAKSWRTTPYDVAAGISKGLADS--TIIAKVNGVLWDLDRPLETNC 92
+TL G + VP S+ A L + I+ + D P
Sbjct: 9 LTLSHGSLEHVLLVPTASF------FIASQ---LQEQFNKILPEPTEGFAADDEP---TT 56
Query: 93 KLELLNKFDNEEASSVFWLAFVNGVLWDLDRPLETNCKLELLNKFDNE--EASSVFWHST 150
EL+ KF L +V+ ++ L +F+N E + + H+
Sbjct: 57 PAELVGKF----------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HAL 104
Query: 151 AHVLGEAMERV-----------YGGCLCYGPPIENGFYYDMYL-----DGEA-------- 186
A L + + + P + + L +G A
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--SNSALFRAVGEGNAQLVAIFGG 162
Query: 187 QMERITLWDKLKKQYD----------EEIA------AKVPEEIQVTLPDGKIVPAKSWRT 230
Q +++L+ Y + A + + + G + W
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLE 220
Query: 231 TP--------------------------YDVAA------------------GISKGLADS 246
P Y V A G S+GL +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 247 TIIA--KDWT--RANKSRGNEL-----CESSQYFSLVSTLDFPVMEGLMKDIVK--EKQP 295
IA W + + + + + S P +++D ++ E P
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS---LP--PSILEDSLENNEGVP 335
Query: 296 -----FERLEMKK-EDLIEMF-KYNP--FKLRI-LKEKVNTPTTTAYR----CGPLIDLC 341
L ++ +D + + P ++ I L VN + GP L
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL---VNGA-----KNLVVSGPPQSLY 387
Query: 342 R-GPHVRHTGKIKA------FKVTKYNPFKLRILKEKVNT---PTTTAYRCGPLIDLCRG 391
+R K KA ++ PF R K K + P + +
Sbjct: 388 GLNLTLR---KAKAPSGLDQSRI----PFSER--KLKFSNRFLPVASPF----------- 427
Query: 392 PHNSSTYWEGKAD--AESLQRVYGISFPDNKQLK-------EWEKLQEEAA 433
H S +D + L + +SF + K ++ + L+ +
Sbjct: 428 -H--SHLLVPASDLINKDLVKN-NVSF-NAKDIQIPVYDTFDGSDLRVLSG 473
Score = 40.0 bits (93), Expect = 0.003
Identities = 63/362 (17%), Positives = 106/362 (29%), Gaps = 169/362 (46%)
Query: 47 IVPAKSWRTTPYDV------AAGISKGLADSTIIAKVNGVLWDLDRPLETNCK--LELLN 98
+V AK TP ++ A G S+GL + IA+ + W+ + + + +L
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--WE---SFFVSVRKAITVL- 303
Query: 99 KFDNEEASSVFWL------AFVNGVLW----------------------DLDRP-LE--- 126
F++ A+ N L +L + ++
Sbjct: 304 ----------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 127 --TNCKLE--------LLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIENGF 176
TN L L+N N V+ GPP
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKN------------LVVS-------------GPPQS--- 385
Query: 177 YYDMYLDGEAQMERITLWDKLKKQYDEEIAAKVPEEI-QVTLPDGKIVPAKSWR----TT 231
L G L L+K AK P + Q +P + S R +
Sbjct: 386 -----LYG--------LNLTLRK-------AKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 232 PYDVAAGISKGLADST-IIAKDWTRANKSRGNELCESSQYFSLVSTLDFPV--------M 282
P+ S L ++ +I KD + N S F+ + PV +
Sbjct: 426 PFH-----SHLLVPASDLINKDLVKNNVS-----------FN-AKDIQIPVYDTFDGSDL 468
Query: 283 EGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCR 342
L I E +++ I++ V TTT ++ ++D
Sbjct: 469 RVLSGSIS-------------ERIVDC---------IIRLPVKWETTTQFKATHILDF-- 504
Query: 343 GP 344
GP
Sbjct: 505 GP 506
Score = 32.7 bits (74), Expect = 0.59
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 624 EVWNKAEKQLEASLN-SFGEPWTENPGDGAFY--GPK 657
+VWN+A+ + + S + NP + + G K
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Score = 31.9 bits (72), Expect = 0.84
Identities = 38/246 (15%), Positives = 64/246 (26%), Gaps = 71/246 (28%)
Query: 431 EAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEF----IRSEYRKRGFQEV 486
A R ++ F + G+ A + F +Y F+E+
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGN-------AQLV---AIFGGQGNTDDY----FEEL 173
Query: 487 VSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALK-----PMNCPGHC-LIFDHRVRS 540
L+QT Y + ++ L ++ + +
Sbjct: 174 R-------DLYQT------YHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLN--ILE 217
Query: 541 WRELPLRMADFGVLHRNELSGALTGLT---------RVRRFQQDD-AHIFCTVEQIGDEI 590
W E P D L +S L G+ ++ F + +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 591 VGAL---------DFLRNVYSIFGFTF--NLR-LSTRPEKYLGELEVWNKAEKQLEASL- 637
V A+ F +V F +R P L LE SL
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL--------PPSILEDSLE 329
Query: 638 NSFGEP 643
N+ G P
Sbjct: 330 NNEGVP 335
Score = 29.6 bits (66), Expect = 5.2
Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 60/157 (38%)
Query: 118 LWDL-DRPLETNCKLELLNKFDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIEN-- 174
+W+ D + +L+ N + T H GE +R+ EN
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNL-----TIHFGGEKGKRIR----------ENYS 1689
Query: 175 GFYYDMYLDGEAQMERITLWDKLKKQYDEEIAAKV---PEEI-------QVTLPDGKIVP 224
++ +DG+ + E K+ K+ +E + + + Q P
Sbjct: 1690 AMIFETIVDGKLKTE------KIFKEINEHSTSYTFRSEKGLLSATQFTQ---------P 1734
Query: 225 A------------KSWRTTPYDVA-AGISKG----LA 244
A KS P D AG S G LA
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 54.5 bits (131), Expect = 4e-08
Identities = 38/244 (15%), Positives = 72/244 (29%), Gaps = 21/244 (8%)
Query: 393 HNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHEL 452
H+ + G S E ++ + K RE E
Sbjct: 4 HHHHHHHGGLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRR 63
Query: 453 SPGSCFFQPKGAFIY-NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG--HWAHYSEN 509
+ Y L I + RGF E+ SP + ++ + G + S+
Sbjct: 64 KKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQ 123
Query: 510 MFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRV 569
+F D + + L+PM P R+ P+++ + G +R E G +
Sbjct: 124 IFRVD---KNFCLRPMLTPNLYNYLRKLDRAL-PDPIKIFEIGPCYRKESDGK----EHL 175
Query: 570 RRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTR------PEKYLGEL 623
F G + + + G F + + + G+L
Sbjct: 176 EEFTMLVFWQM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHGDL 231
Query: 624 EVWN 627
E+ +
Sbjct: 232 ELSS 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 5e-08
Identities = 89/584 (15%), Positives = 168/584 (28%), Gaps = 214/584 (36%)
Query: 95 ELLNKFDNEEASSVFWLAFVN--------GVLWDLDRPLETNCKLELLNKFDNEEASSVF 146
++ K D + +FWL N +L L ++ N ++ D+ +
Sbjct: 175 KVQCKMDFK----IFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLR 226
Query: 147 WHSTAHVLGEAM-ERVYGGCLCYGPPIENGFYYDMYLDGEAQMERITLWD-KLKKQYDEE 204
HS L + + Y CL + L + + K ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCL-------------LVLLN--------VQNAKAWNAFN-- 263
Query: 205 IAAKVPEEIQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNEL 264
++ K I +T ++ S TT + S L
Sbjct: 264 LSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------------------ 301
Query: 265 CESSQYFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDL-IEMFKYNPFKLRI---- 319
E L+ + +DL E+ NP +L I
Sbjct: 302 -EVKSLLLKY------------------------LDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 320 LKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLR-------ILKEKV 372
+++ + T + D + T I++ + P + R +
Sbjct: 337 IRDGLATWDNWKH---VNCD-------KLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSA 385
Query: 373 NTPTTTAYRCGPLIDLCRGPHNSSTYWEGKADAE-----------SL------QRVYGIS 415
+ PT L W ++ SL + I
Sbjct: 386 HIPTIL---------LSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI- 428
Query: 416 FPDNKQLKEWEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIR 475
P L+ KL+ E A HR I + + F + L+
Sbjct: 429 -PS-IYLELKVKLENEYAL--HRSI-VDH--------------YNIPKTFDSDDLIPPYL 469
Query: 476 SEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVEN-ETYALKPMNCPGHCLIF 534
+Y Y+ H H+ +N+ E+ E L M +
Sbjct: 470 DQY------------FYS--------HIGHHLKNI-----EHPERMTLFRM------VFL 498
Query: 535 DHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 594
D R + E +R N L L +++ ++ +I C + + +V A+
Sbjct: 499 DFR---FLEQKIRHDS---TAWNASGSILNTLQQLKFYKP---YI-CDNDPKYERLVNAI 548
Query: 595 -DFLRNVYSIF---GFTFNLRLSTRPEKYLGELEVWNKAEKQLE 634
DFL + +T LR++ E + ++ +A KQ++
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAE----DEAIFEEAHKQVQ 588
Score = 54.5 bits (130), Expect = 1e-07
Identities = 68/519 (13%), Positives = 136/519 (26%), Gaps = 145/519 (27%)
Query: 1 MSETEIVAKVEELKLDGEKQIESYSDVKVP-KKCIGALNQVTL---PDGKIV------PA 50
M + + + L D + ++ V + L Q L P ++
Sbjct: 107 MMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 51 KSWRTTPYDVAAGISKGLADSTIIAKV-NGVLW-DLDRPLETNCKLELLNKF-------- 100
K+W VA + K+ + W +L LE+L K
Sbjct: 163 KTW------VAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 101 ---------------DNEEASSVFWLA--FVNGVL-----WDLD--RPLETNCKLELLNK 136
+ + + N +L + +CK+ LL
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTT 272
Query: 137 FDNEEASSVFWHSTAHVLGEAMERVYG------------GCLCYGPPIE----NGFYYDM 180
+ + +T H+ + C P E N +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 181 YLDGEAQMERITLWDKLK----KQYDEEIAAKV----PEEIQ------VTLPDGKIVPAK 226
E+ + + WD K + I + + P E + P +P
Sbjct: 333 I--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 227 S----WRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLVSTLDFPVM 282
W + L +++ K K + S Y L L+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISI--PSIYLELKVKLE--NE 442
Query: 283 EGLMKDIVKEKQPFERLE--------------------MKKEDLIEMFKYNP---FKLRI 319
L + IV + + +K + E R
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 320 LKEKVNTPTTTAYRCGPLIDLCRGPHVRHTGKIKAFK--VTKYNPFKLRILKEKVN---T 374
L++K+ +T G +++ ++K +K + +P R++ ++
Sbjct: 503 LEQKIRHDSTAWNASGSILNT--------LQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 375 PTTTAYRCGPLIDLCR---GPHNSSTYWEGKADAESLQR 410
DL R + + + E + +QR
Sbjct: 555 IEENLICS-KYTDLLRIALMAEDEAIFEEA---HKQVQR 589
Score = 45.2 bits (106), Expect = 8e-05
Identities = 70/446 (15%), Positives = 130/446 (29%), Gaps = 139/446 (31%)
Query: 272 SLVSTLDFPVMEGLMK---------DIVKEKQPFER-------LEMKKEDLIEMF----- 310
+ V D ++ + K I+ K L K+E++++ F
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 311 KYN-PFKLRILKEKVNTPT--TTAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPF-KLR 366
+ N F + +K + P+ T Y I+ R + V++ P+ KLR
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMY-----IE-QRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 367 I-LKEKVNTPTTTAYRCGPLIDLCRGPHNSSTYWEGK---ADAESLQRVYGISFPDNKQL 422
L E R + + G S GK A + K
Sbjct: 142 QALLE---------LRPAKNVLID-GVLGS-----GKTWVA-LDVCL--------SYKVQ 177
Query: 423 KE------WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRS 476
+ W L+ + Q+L +++ P + + + I++
Sbjct: 178 CKMDFKIFWLNLKNC--NSPETVLEMLQKL--LYQIDPNWT-SRSDHSSNIKLRIHSIQA 232
Query: 477 EYRKRGFQEVVSP-------NVYNVKLWQ----------TS-----------GHWAHYSE 508
E R R + NV N K W T+ H S
Sbjct: 233 ELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 509 NMFS--FDVENETYAL--KPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALT 564
+ S +E +L K ++C L P R++ R+ L+
Sbjct: 292 DHHSMTLT-PDEVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLA---- 342
Query: 565 GLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL-----RNVY---SIFGFTFNLRLSTR- 615
++ + +++ I +L+ L R ++ S+F S
Sbjct: 343 ---TWDNWKHVN------CDKLTTIIESSLNVLEPAEYRKMFDRLSVF------PPSAHI 387
Query: 616 PEKYLGELEVWNKAEKQ-LEASLNSF 640
P L + W K + +N
Sbjct: 388 PTILLSLI--WFDVIKSDVMVVVNKL 411
Score = 35.6 bits (81), Expect = 0.069
Identities = 41/273 (15%), Positives = 75/273 (27%), Gaps = 66/273 (24%)
Query: 467 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE---NMFSFDVENETYALK 523
Y L+ I++E R Q S Y E ++ N+
Sbjct: 91 YKFLMSPIKTEQR------------------QPSMMTRMYIEQRDRLY-----NDNQVFA 127
Query: 524 PMNCPGHCLIFDHRVRSW-REL-PLR------MADFG--VLHRNELSGALTGLTRVRRFQ 573
N ++R EL P + + G + AL +
Sbjct: 128 KYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWV-------ALDVCLSYKVQC 178
Query: 574 QDDAHIF-CTVEQIGDEIVGALDFLRNVYSIFGFTFNLRL--STRPEKYLGELEVWNK-- 628
+ D IF ++ + L+ L+ + + R S+ + + ++ +
Sbjct: 179 KMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 629 -AEKQLEASLNSFGEPWTENPGDGAF-YGPKI-----DITITDALKRPHQCATIQLDFQL 681
K E L + AF KI +TD L +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 682 PIRFNLAYVKNVRAQ-----THELPRTLSDIRP 709
VK++ + +LPR + P
Sbjct: 297 T--LTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 44.6 bits (105), Expect = 6e-05
Identities = 35/267 (13%), Positives = 67/267 (25%), Gaps = 55/267 (20%)
Query: 423 KEWEKLQEEAAKRDHRKIGREQELFFFHEL----SPGSCFFQPKGAFIYNTLVEFIRSEY 478
+ +I + S G I L I + +
Sbjct: 19 SHMNIAVLPNSPDTAPQIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALI-TSH 77
Query: 479 RKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-------------------------F 513
R+ G + + P V + + SG+ + +
Sbjct: 78 REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTT 137
Query: 514 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQ 573
+ L P C + LR R E L R++ F+
Sbjct: 138 SLSPADLVLSPAACY-PVYPIAASRGPLPKGGLRFDVAADCFRRE---PSKHLDRLQSFR 193
Query: 574 QDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRP----------------- 616
+ T + + D + + + G TF + ++ P
Sbjct: 194 MREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQ 253
Query: 617 EKYLGELEVWNKAEKQ-LE-ASLNSFG 641
K+ EL + ++E+Q S N
Sbjct: 254 LKF--ELLIPLRSEEQPTACMSFNYHR 278
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris}
PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 474 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF-DVENETYALKPMNCPGHCL 532
+R E + G E++ P + LW+ SG + Y M D P N
Sbjct: 77 VREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITE 136
Query: 533 IFDHRVRSWRELPL 546
IF ++S++ LPL
Sbjct: 137 IFRAYIKSYKSLPL 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.002
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 25/51 (49%)
Query: 630 EKQ----LEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 676
EKQ L+ASL + D A P + A+K AT++
Sbjct: 18 EKQALKKLQASLKLY-AD------DSA---PAL------AIK-----ATME 47
Score = 29.9 bits (66), Expect = 1.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 3 ETEIVAKVE-ELKLDGEKQIESYSDVKVPKKCIGA 36
E + + K++ LKL Y+D P I A
Sbjct: 18 EKQALKKLQASLKL--------YADDSAPALAIKA 44
Score = 29.5 bits (65), Expect = 2.2
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 10/25 (40%)
Query: 292 EKQPFERLE--MKKEDLIEMFKYNP 314
EKQ ++L+ +K Y
Sbjct: 18 EKQALKKLQASLK--------LYAD 34
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 37.9 bits (89), Expect = 0.011
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 474 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF-DVENETYALKPMNCPGH-- 530
+R E+ K E++ P + +LW+ SG + Y N++ D + Y L P H
Sbjct: 57 MREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPT----HEE 112
Query: 531 --CLIFDHRVRSWRELPL 546
+ + S++ LPL
Sbjct: 113 TFTELIRDEINSYKRLPL 130
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 34.7 bits (80), Expect = 0.13
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274
+ + + +I P A +++ +A S I ++++ +A R +E E + F
Sbjct: 504 IAIKEDQIT------RVPLVDAVELTQQVAKS-IESRNFKKAISLRDSEFVEHMKNFIST 556
Query: 275 STLDFPVMEGLMKDIVK 291
++ D ++ K
Sbjct: 557 NSADHVPPSLPLEKRKK 573
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 33.0 bits (76), Expect = 0.15
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 283 EGLMKDIVKEKQPFERLEMKKEDLIEMF--KYNPFKLRILKEKVNTPTTTAYRCGPLID- 339
E L + VKE P + E+ +E+ +MF ++ + + D
Sbjct: 59 ERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRI-------LKVVVIEDW 111
Query: 340 ---LCRGPHVRHTGKIKAFKVTK 359
C H + TG+I K+ K
Sbjct: 112 NVNACNKEHTKTTGEIGPIKIRK 134
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 34.1 bits (78), Expect = 0.18
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 510 MF------SFDVENETYALKPMNCPGHCLIFDHRVRS-WRELPLRMADFGVLHRNELSGA 562
MF Y L+P G + F + + + R+L +A G RNE++
Sbjct: 168 MFQDLRGPRGGRGLLAY-LRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-P 225
Query: 563 LTGLTRVRRFQQDDAHIFC 581
+ RVR F+Q + F
Sbjct: 226 RNFIFRVREFEQMEIEYFV 244
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 33.3 bits (77), Expect = 0.23
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 338 IDLCRGPHVRHTGKIKAFKVTKY 360
++ C G H R+T ++ K+ ++
Sbjct: 192 LNACCGVHPRNTRDLQVIKIRRW 214
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 32.7 bits (74), Expect = 0.50
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 510 MFSFDV---ENETYALKPMNCPGHCLIFDHRVRSWRE-LPLRMADFGVLHRNELSGALTG 565
MF + N L+P G L F + + LP A G RNE+S +G
Sbjct: 227 MFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEIS-PRSG 285
Query: 566 LTRVRRFQQDDAHIFC 581
L RVR F + F
Sbjct: 286 LIRVREFTMAEIEHFV 301
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 31.8 bits (73), Expect = 0.53
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 338 IDLCRGPHVRHTGKIKAFKVTK 359
+ C G HV+ +I K K
Sbjct: 179 VIPCGGTHVKDIKEIGHIKKLK 200
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium; 2.20A {Clostridium leptum}
Length = 78
Score = 29.4 bits (67), Expect = 0.63
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 43 PDGKIV--PAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLET 90
P G ++ P S T D A I + + I AKV+G + +D ++T
Sbjct: 13 PKGDVISLPIGS---TVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKT 59
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase;
methods development, TGS domain, predominantly
beta-sheet structure; NMR {Porphyromonas gingivalis}
Length = 73
Score = 29.0 bits (66), Expect = 0.91
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 43 PDGKIV--PAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLET 90
P G+I P + T D A + L D I AKVN L L L +
Sbjct: 8 PKGEIKRLPQGA---TALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNS 54
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 31.5 bits (72), Expect = 1.1
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274
+ + + KIV P + ++K +A++ I AKD+ RA R E E F +
Sbjct: 326 IAVNENKIV------RKPLMESVKLTKAVAEA-IQAKDFKRAMSLRDTEFIEHLNNFMAI 378
Query: 275 STLDFPVME 283
++ D +
Sbjct: 379 NSADHNEPK 387
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus
stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A*
1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Length = 679
Score = 31.0 bits (70), Expect = 1.7
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 178 YDMYLDGEAQMER-ITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWR 229
Y+ + +G Q ++ W++LK + DE+ V E + + + AK WR
Sbjct: 609 YNTHFEGVEQAKQLRKRWEQLKGKIDEKRYHDVLERLTIQVEH-----AKEWR 656
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase;
1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2
PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Length = 708
Score = 31.0 bits (70), Expect = 1.7
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 178 YDMYLDGEAQMER-ITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWR 229
Y G Q+ WD+ + D A+V +QV + A WR
Sbjct: 609 VHKYYQGVEQVRAMQRTWDQQEAYVDAARFAQVKALLQVQERE-----AVRWR 656
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 30.8 bits (70), Expect = 1.9
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274
V+L + V P ++K + + + K + A K RG + + + L+
Sbjct: 336 VSLSGNQAV------RLPLMECVQVTKDVTKA-MDEKRFDEAMKLRGRSFMNNWEVYKLL 388
Query: 275 STLDFPVMEGLMKDI 289
+ + P + +
Sbjct: 389 AHIRPPAPKSGSYTV 403
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 30.2 bits (69), Expect = 2.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 466 IYNTLVEFIRSEYRKRGFQEVV 487
I + +FI+ + + Q VV
Sbjct: 9 ITEKMCDFIQEKVKNSQSQGVV 30
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 30.3 bits (69), Expect = 2.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 338 IDLCRGPHVRHTGKIKAFKVTK 359
+ C G H R TG+I K+ K
Sbjct: 700 VQACGGTHCRSTGEIGMLKILK 721
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 30.2 bits (68), Expect = 2.7
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 215 VTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDWTRANKSRGNELCESSQYFSLV 274
+++ + KIV P + +K ++ + I AKD+ +A + R E S + F V
Sbjct: 531 ISILENKIV------RQPLVESVAQTKTVSAA-IEAKDFDKALQLRDQEFATSYENFLSV 583
Query: 275 STLDFP 280
S D
Sbjct: 584 SKYDDG 589
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 29.1 bits (66), Expect = 4.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 464 AFIYNTLVEFIRSEYRKRGFQEVV 487
Y+ ++E I R++G VV
Sbjct: 3 ILDYDKVIERILEFIREKGNNGVV 26
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 4.9
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 402 KADAESLQRVYGISFPDNKQLKEWEKLQEEAAKRDHRKIGREQELF 447
+ DA S K L+EW + Q E +++ + F
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 28.9 bits (65), Expect = 6.2
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 418 DNKQLKEW-EKLQEEAAKRDHRKIGREQELFFFH--ELSPGSCFFQPKG--AFIYNTLVE 472
N+++K + DH + + + ++S GS + KG A L+
Sbjct: 225 ANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVS-GSRSYALKGDLALYELALLR 283
Query: 473 FIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKP 524
F +RGF + P+ K + +GH+ Y + +++ + L
Sbjct: 284 FAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWA--IAETDLYLTG 333
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 28.8 bits (65), Expect = 6.5
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 210 PEEIQVTLPDGKIVPAKSWRTTP-YDVA 236
P + VT DG+ P P D+A
Sbjct: 63 PPKTTVTFSDGRTAPFTVVGADPTSDIA 90
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 28.4 bits (64), Expect = 7.4
Identities = 10/87 (11%), Positives = 21/87 (24%), Gaps = 21/87 (24%)
Query: 618 KYLGELEVWNKAEKQLEA-SLNS---FGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673
K+ + + +A L G D GP IT
Sbjct: 159 KWALDEQAREQARNGLPVVIGIPGMVLG------ELD---IGPTTGRVITAIGNG----- 204
Query: 674 TIQLDFQLPIRFNLAYVKNVRAQTHEL 700
++ + + N+ + +
Sbjct: 205 --EMTHYVAGQRNVIDAAEA-GRGLLM 228
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 28.5 bits (62), Expect = 9.9
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 270 YFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTT 329
++ +S + +E L IV E + + + + + F+L
Sbjct: 649 HYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYG---FRLYQGGVVPGREIR 705
Query: 330 TAYRCGPLIDLCRGPHVRHTGKIKAFKVTK 359
+ C G H+ TG + + +
Sbjct: 706 VVXIEDWDVQACGGTHLPSTGLVGPIXILR 735
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.422
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,385,947
Number of extensions: 703790
Number of successful extensions: 1737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1674
Number of HSP's successfully gapped: 68
Length of query: 715
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 615
Effective length of database: 3,909,693
Effective search space: 2404461195
Effective search space used: 2404461195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)