RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10609
(715 letters)
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 267 bits (683), Expect = 9e-85
Identities = 126/257 (49%), Positives = 172/257 (66%), Gaps = 1/257 (0%)
Query: 435 RDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
RDHRKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + +
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60
Query: 495 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 554
LW+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG
Sbjct: 61 VLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSC 120
Query: 555 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 613
HRNE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LS
Sbjct: 121 HRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLS 180
Query: 614 TRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 673
TRPEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC
Sbjct: 181 TRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240
Query: 674 TIQLDFQLPIRFNLAYV 690
T+QLDF LP R + +YV
Sbjct: 241 TVQLDFSLPSRLSASYV 257
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 224 bits (572), Expect = 1e-68
Identities = 108/263 (41%), Positives = 160/263 (60%), Gaps = 8/263 (3%)
Query: 436 DHRKIGREQELFFFHEL-SPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 494
DHRKIG+E ELF +L G + P GA I + +I + G+ V +P + NV
Sbjct: 1 DHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANV 60
Query: 495 KLWQTSGHWAHYSENMFSFDVEN--ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFG 552
L++TSGHW HY E+MF + E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G
Sbjct: 61 DLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELG 120
Query: 553 VLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLR 611
+HR E SGA++GL RVR +D+HIF +QI +E ++ + +VY FGF ++ R
Sbjct: 121 TMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR 180
Query: 612 LSTR----PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALK 667
LS R EKY + ++WNKAE L+ + + G + E G+ AFYGPK+D+ + A+
Sbjct: 181 LSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMG 240
Query: 668 RPHQCATIQLDFQLPIRFNLAYV 690
+ +T QLDF LP RF+L Y+
Sbjct: 241 KEETLSTAQLDFLLPERFDLTYI 263
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 134 bits (337), Expect = 1e-35
Identities = 36/288 (12%), Positives = 71/288 (24%), Gaps = 54/288 (18%)
Query: 426 EKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQE 485
E L + +R H G Q+L LS F P G + L S ++
Sbjct: 1 EAL-VDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSM-VVFREQ 58
Query: 486 VVSPNVYNVKLWQTSGHWAHYSEN--------------------MFSFDVENETYALKPM 525
V + + + + + + + F ++ + L+
Sbjct: 59 VFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRAT 118
Query: 526 NCPGHCLIFDHRVRS-WRELPLRMADFGVLHRNELSGALTG--LTRVRRFQQDDAHIFCT 582
G + + + R+LP +A GV + T +TRV + F
Sbjct: 119 LLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTP 178
Query: 583 VEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGE 642
+ L + F P + K + +
Sbjct: 179 TRTSSQWLDFWLRHRLLWWRKFAM--------SPSNFSSADCQDELGRKGSKL---YYSF 227
Query: 643 PWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYV 690
PW + P + + ++
Sbjct: 228 PWGKEPIETLWNLGDQEL------------------LHTYPGNVSTIQ 257
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 114 bits (285), Expect = 3e-28
Identities = 34/261 (13%), Positives = 68/261 (26%), Gaps = 35/261 (13%)
Query: 459 FQPKGAFIYNTLVEFIRSE--YRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-- 514
+ P G + N L + Y + + + + + + + SGH A +++ M
Sbjct: 34 YGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKA 93
Query: 515 ----------------------VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFG 552
Y + + R+L +A G
Sbjct: 94 RYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIG 153
Query: 553 VLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRL 612
RNE++ + RVR F+Q + F + ++ + G
Sbjct: 154 KAFRNEIT-PRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGL------ 206
Query: 613 STRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC 672
+R + + A + P +G D+ +
Sbjct: 207 -SRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGI 265
Query: 673 ATIQLDFQLPIRFNLAYVKNV 693
L + LAY
Sbjct: 266 TARVLRNEHS-TQRLAYRDPE 285
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 109 bits (272), Expect = 4e-28
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 34/166 (20%)
Query: 270 YFSLVSTLDFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTT 329
+S+ DF +E MK IV E ER + +++ E+F + +KL ++
Sbjct: 48 IDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENV 107
Query: 330 TAYRCGPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLC 389
T Y G DLCRG HV T KIK FK+
Sbjct: 108 TLYSQGDFTDLCRGVHVPSTAKIKEFKLL------------------------------- 136
Query: 390 RGPHNSSTYWEGKADAESLQRVYGISFPDNKQLKEWEKLQEEAAKR 435
+ YW G ++ + LQR+YG +F D K+LK ++ EE +R
Sbjct: 137 ---STAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKER 179
Score = 52.1 bits (124), Expect = 2e-08
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 137 FDNEEASSVFWHSTAHVLGEAMERVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWD 195
+EEA V HSTAH++ A++R+YG GP IE GFYYD +D ++
Sbjct: 2 PGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISS---DDFE 58
Query: 196 KLKKQYDEEIAAKVPEEIQVT 216
+++K + + + E +V
Sbjct: 59 QIEKTMKQIVNENMKIERKVV 79
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 110 bits (275), Expect = 1e-27
Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 14/238 (5%)
Query: 445 ELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA 504
E++ G + P G I E IR+ + G E + P + L
Sbjct: 16 EIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHI 75
Query: 505 HYSENMFSFD------VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 558
E+ + + AL+P + + V+ +LP+++ R E
Sbjct: 76 KGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYE 135
Query: 559 LSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE 617
+ +AH T E+ +++ A+ + + G + + +
Sbjct: 136 TKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWD 195
Query: 618 KYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA---LKRPHQC 672
K+ G + G + +I +Q
Sbjct: 196 KFPGAEYTMAFDTIFPDGRTMQIATVH----NLGQNFSKTFEIIFETPTGDKDYAYQT 249
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 88.4 bits (218), Expect = 5e-20
Identities = 42/282 (14%), Positives = 89/282 (31%), Gaps = 53/282 (18%)
Query: 417 PDNKQLKEW-EKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAFIYNTLVEFIR 475
P ++ EW ++ ++A D+ + G+ +P G I+ + + +
Sbjct: 5 PQSQDFSEWYLEVIQKAELADYGPV-------------RGTIVVRPYGYAIWENIQQVLD 51
Query: 476 SEYRKRGFQEVVSPNVYNVKLWQTSG-HWAHYSENMFSFDVE-----NETYALKPMNCPG 529
+++ G Q P + + H +S + E A++P +
Sbjct: 52 RMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETV 111
Query: 530 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDE 589
++ +RSWR+LP + +G + R E+ T +Q+ E
Sbjct: 112 IGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEA---- 167
Query: 590 IVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPG 649
E+ L ++ + ++ A G +
Sbjct: 168 --------------------------EEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKF 201
Query: 650 DGAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYV 690
GA Y I+ + D + Q T L F++ +
Sbjct: 202 AGAVYTTTIEALMKD--GKALQAGTSHYLGENFARAFDIKFQ 241
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 74.5 bits (182), Expect = 2e-15
Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 41/254 (16%)
Query: 445 ELFFFHELSPGSCFFQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSGHW 503
E+ G + P G I ++ +R R +EV+ P + L + + H
Sbjct: 14 EIIDQRYPVKGMHVWMPHGFMIRKNTLKILR-RILDRDHEEVLFPLLVPEDELAKEAIHV 72
Query: 504 AHYSENMF-----SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 558
+ + ++ AL+P + +F VRS +LP+R R E
Sbjct: 73 KGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYE 132
Query: 559 LSGALTGLTRVRRF--QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRP 616
+ L RVR ++ I T + +++ A++ + ++ G +
Sbjct: 133 -TKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPY-------- 183
Query: 617 EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 676
+ W+K P + G +
Sbjct: 184 --LITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVH---------------------N 220
Query: 677 LDFQLPIRFNLAYV 690
L F + +
Sbjct: 221 LGQTFARTFEIKFE 234
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 72.5 bits (177), Expect = 2e-14
Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 14/268 (5%)
Query: 418 DNKQLKEW-EKLQEEAAKRDHRKIGREQELFFFH--ELS-PGSCFFQPKGAFIYNTLVEF 473
N+++K + DH + + + ++S S + A L+ F
Sbjct: 6 ANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRF 65
Query: 474 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLI 533
+RGF + P+ K + +GH+ Y + + + + L +
Sbjct: 66 AMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQV--WAIAETDLYLTGTAEVVLNAL 123
Query: 534 FDHRVRSWRELPLRMADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCTVEQIGDEI 590
+ + LPLR A + R+E + GL RV +F + + ++ +
Sbjct: 124 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASL--EAS 181
Query: 591 VGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW-TENPG 649
A L L E G++ + +E L S G T +
Sbjct: 182 DRAFQELLENAEEILRLLELP-YRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCS 240
Query: 650 DGAFYGPK-IDITITDALKRPHQCATIQ 676
+ + ++ D R T+
Sbjct: 241 ALLDWQARRANLRYRDPEGRVRYAYTLN 268
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 69.1 bits (168), Expect = 2e-14
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 37/142 (26%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFK--YNPFKLRILKEKVNT-PTTTAYRC 334
D +E M ++ ++ + ++ + E F +K+ IL E + Y
Sbjct: 54 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFH 113
Query: 335 GPLIDLCRGPHVRHTGKIKAFKVTKYNPFKLRILKEKVNTPTTTAYRCGPLIDLCRGPHN 394
+D+CRGPHV + FK+ K
Sbjct: 114 EEYVDMCRGPHVPNMRFCHHFKLMK----------------------------------T 139
Query: 395 SSTYWEGKADAESLQRVYGISF 416
+ YW G ++ + LQR+YG ++
Sbjct: 140 AGAYWRGDSNNKMLQRIYGTAW 161
Score = 57.1 bits (137), Expect = 3e-10
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 139 NEEASSVFWHSTAHVLGEAMERVYGGC-LCYGPPIENGFYYDMYLDGEAQMERITLWDKL 197
+EE + HS AH+LG A+++++ + GP I+NGFYYD+ LD E + L
Sbjct: 2 DEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQE---DVEAL 58
Query: 198 KKQYDEEIAAKVPEEIQVTLPDGKIVPAKSW 228
+K+ E + +
Sbjct: 59 EKRMHELAEKNYDVIKKKVSWHEARETFANR 89
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS),
N-terminal 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 59
Score = 63.6 bits (155), Expect = 1e-13
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97
+ PDG TT D+A IS GL + K NG L DL +PLET+ +E++
Sbjct: 2 NIQFPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV 59
Score = 37.8 bits (88), Expect = 2e-04
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
I + PDG TT D+A IS GL + K
Sbjct: 1 INIQFPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGK 38
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS),
N-terminal 'additional' domain {Escherichia coli
[TaxId: 562]}
Length = 62
Score = 63.6 bits (155), Expect = 2e-13
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 39 QVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKVNGVLWDLDRPLETNCKLELL 97
+TLPDG +P DVA I GLA + I +VNG L D +E + +L ++
Sbjct: 3 VITLPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII 60
Score = 37.8 bits (88), Expect = 2e-04
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 213 IQVTLPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK 251
+TLPDG +P DVA I GLA + I +
Sbjct: 2 PVITLPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGR 39
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 52.6 bits (125), Expect = 9e-09
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 278 DFPVMEGLMKDIVKEKQPFERLEMKKEDLIEMFKYNPFKLRILKEKVNTPTTTAYRCGPL 337
+ +E L + VKE P + E+ +E+ +MF + + L + E V
Sbjct: 54 EIREIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKV-VVIEDWN 112
Query: 338 IDLCRGPHVRHTGKIKAFKVTK 359
++ C H + TG+I K+ K
Sbjct: 113 VNACNKEHTKTTGEIGPIKIRK 134
Score = 34.9 bits (79), Expect = 0.012
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 148 HSTAHVLGEAMERVYG--GCLCYGPPIENGFYYDMY 181
HS HV+ A+ +V G Y ++ +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIV 44
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 47.4 bits (111), Expect = 3e-06
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 459 FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSF-DV 515
+ +R + + +QEV+ P+ +L+ E MF F
Sbjct: 10 MTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH 69
Query: 516 ENETYALKPMNCPGHCLIFDHRVRSW 541
E ++ L+ ++ S
Sbjct: 70 EGQSITLRYDFTLPLVRLYSQIKDST 95
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 35.4 bits (80), Expect = 0.020
Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 4/104 (3%)
Query: 459 FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT----SGHWAHYSENMFSFD 514
P+ + + + + ++E+ +P + L+ S F
Sbjct: 11 ILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK 70
Query: 515 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 558
+ +H+++ P+++ G + R E
Sbjct: 71 GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE 114
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 32.4 bits (73), Expect = 0.065
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 338 IDLCRGPHVRHTGKIKAFKVTK 359
+ C G HV+ +I K K
Sbjct: 92 VIPCGGTHVKDIKEIGHIKKLK 113
Score = 30.1 bits (67), Expect = 0.41
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 148 HSTAHVLGEAMERVYGGCLCY---GPPIENGFYYDMYLDGEAQMERITLWDKLKKQYDEE 204
H+ H+L + V G YD+ + + K DE
Sbjct: 12 HTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQIISLFNKYVDEG 71
Query: 205 IAAK 208
K
Sbjct: 72 GEVK 75
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 30.8 bits (70), Expect = 0.071
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 42 LPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAK--VNGVLWDLDRPLETNCKLELL 97
LP ++ S TP D+A + L + A D L+ N ++++
Sbjct: 20 LPHVFLMKKGS---TPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIV 74
Score = 27.0 bits (60), Expect = 1.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 217 LPDGKIVPAKSWRTTPYDVAAGISKGLADSTIIAKDW 253
LP ++ S TP D+A + L + A +
Sbjct: 20 LPHVFLMKKGS---TPRDLAFKVHTDLGKGFLYAINA 53
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 30.9 bits (68), Expect = 0.50
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 2/100 (2%)
Query: 459 FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENE 518
F P+ + + + GF+ + P++ + L+ + +SF +
Sbjct: 13 FYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLY-RIKSGEELLQQTYSFVDKGG 71
Query: 519 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 558
+ R + PLR F + R E
Sbjct: 72 REVTLIPEATPST-VRMVTSRKDLQRPLRWYSFPKVWRYE 110
>d2a0sa1 d.96.1.2 (A:18-180) 6-pyruvoyl tetrahydropterin synthase
{Plasmodium vivax [TaxId: 5855]}
Length = 163
Score = 29.7 bits (66), Expect = 0.77
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 465 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENM 510
+I N L+E I + K + V + ++ A N+
Sbjct: 123 YILNQLIEEIDLPFLKTRSVNYME-----VTVSESPSQKATVHRNI 163
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 29.3 bits (66), Expect = 2.0
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 178 YDMYLDGEAQMER-ITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWR 229
Y+ + +G Q ++ W++LK + DE+ V E + + + AK WR
Sbjct: 467 YNTHFEGVEQAKQLRKRWEQLKGKIDEKRYHDVLERLTIQVEH-----AKEWR 514
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 29.3 bits (66), Expect = 2.0
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 178 YDMYLDGEAQMER-ITLWDKLKKQYDEEIAAKVPEEIQVTLPDGKIVPAKSWR 229
Y G Q+ WD+ + D A+V +QV + A WR
Sbjct: 462 VHKYYQGVEQVRAMQRTWDQQEAYVDAARFAQVKALLQVQERE-----AVRWR 509
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 4/161 (2%)
Query: 459 FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG--HWAHYSENMFSFDVE 516
+ P I+ + +++ G+ E+ P V L++ + + M++F+
Sbjct: 11 YLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 70
Query: 517 NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDD 576
N C+ R+ G + R+E G R +
Sbjct: 71 NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQK--GRYRQFHQLGCE 128
Query: 577 AHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE 617
+ + I+ + R + T L E
Sbjct: 129 VFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLE 169
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 28.0 bits (61), Expect = 4.0
Identities = 34/250 (13%), Positives = 67/250 (26%), Gaps = 17/250 (6%)
Query: 459 FQPKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAH--YSENMFSFDVE 516
K ++ +V R G E+V+P ++++ A + MF+F
Sbjct: 11 LFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR 70
Query: 517 NETYALKP---------MNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLT 567
++ VR W P+ A+ R +
Sbjct: 71 GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEA 130
Query: 568 RVRRFQQDDAHIFCTVEQIGDEI-----VGALDFLRNVYSIFGFTFNLRLSTRPEKYLGE 622
DA + + E+ L + + + LR P +
Sbjct: 131 LGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALS 190
Query: 623 LEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLP 682
+ + E+ L+S E + P +D +A + +P
Sbjct: 191 EDSKERLEENPMRILDSKSERDQALLKE-LGVRPMLDFLGEEARAHLKEVERHLERLSVP 249
Query: 683 IRFNLAYVKN 692
A V+
Sbjct: 250 YELEPALVRG 259
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 27.3 bits (60), Expect = 6.2
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 137 FDNEEASSVFWHSTAHVLGEAMERVYGGCLCYGPPIENGFYYDMYLDGEAQMERITLWD 195
D + + + A++ VYG L + + G YY M E + E+ L
Sbjct: 106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQ--KTGKYYAMVTGKEGEFEQYELNA 162
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 26.6 bits (58), Expect = 6.8
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 82 WDLDRPLETNCKLELLNKFDNEEASSVFWLAFVNGVLWDLDRPLETNC----KLELLNKF 137
W LD ++T D+EE + +NG ++ + L + L+
Sbjct: 19 WYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMG 78
Query: 138 DNEEASSVFWH 148
+ + +V +H
Sbjct: 79 NEIDLHTVHFH 89
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB
DNA-binding domain {Escherichia coli [TaxId: 562]}
Length = 114
Score = 26.1 bits (57), Expect = 7.2
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 171 PIENGFYYDMYLD-GEAQMERITLWDKLKKQYDEEIA-AKVPEEIQVTLPDGKIVP---- 224
P E + L G+ + + K + + +PE+I G++
Sbjct: 16 PREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTVV 75
Query: 225 ---AKSWRTTPYDVAAGISKGLADST 247
+++ P +V A + + T
Sbjct: 76 NELVTAFKKRPEEVEAWLDDDTQEIT 101
>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 26.0 bits (57), Expect = 8.5
Identities = 5/53 (9%), Positives = 13/53 (24%), Gaps = 6/53 (11%)
Query: 512 SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALT 564
V+ K C ++ R+W + ++ +
Sbjct: 12 QMKVKGSNTTYKD------CKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVE 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.422
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,834,841
Number of extensions: 139835
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 40
Length of query: 715
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 623
Effective length of database: 1,144,436
Effective search space: 712983628
Effective search space used: 712983628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)