RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10611
(124 letters)
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 220 bits (562), Expect = 2e-71
Identities = 76/106 (71%), Positives = 85/106 (80%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK YKEEIFGPVL + VDTLDEAI+IIN NPYGNG AIFT +GA ARKF +E+D G VG
Sbjct: 373 MKIYKEEIFGPVLSIVRVDTLDEAIAIINANPYGNGAAIFTRSGAAARKFQREVDAGMVG 432
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLW 106
INVPIPVPL+ FSF G +GSF G+ HFYGK G FYT+TKTVT W
Sbjct: 433 INVPIPVPLAFFSFGGWKGSFFGDLHFYGKDGVRFYTQTKTVTSRW 478
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 190 bits (485), Expect = 5e-60
Identities = 71/106 (66%), Positives = 84/106 (79%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK Y+EEIFGPVL L DTL+EAI++IN +PYGNGTAIFT +GA AR+F EI+ GQVG
Sbjct: 372 MKAYQEEIFGPVLCVLEADTLEEAIALINASPYGNGTAIFTRDGAAARRFQHEIEVGQVG 431
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLW 106
+NVPIPVPL FSFTG + SF G++H YGKQG +FYT KTVT W
Sbjct: 432 VNVPIPVPLPYFSFTGWKDSFFGDHHIYGKQGTHFYTRGKTVTTRW 477
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 162 bits (411), Expect = 2e-48
Identities = 73/121 (60%), Positives = 94/121 (77%), Gaps = 3/121 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+CYKEEIFGPVLVC+ ++ DEAISIINKN YGNG AIFT++GA ARKF +I+ GQ+G
Sbjct: 485 MECYKEEIFGPVLVCMQANSFDEAISIINKNKYGNGAAIFTSSGAAARKFQMDIEAGQIG 544
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDVTHSKAAVSM 120
INVPIPVPL FSFTG++ SF G+ +FYGK G F+T+ K VTQ ++ HS ++++
Sbjct: 545 INVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVDFFTQIKLVTQKQKD---IHSPFSLAI 601
Query: 121 P 121
P
Sbjct: 602 P 602
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 123 bits (312), Expect = 1e-34
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPVL + DEAI + N YG +FTN+ A + ++ ++ G V
Sbjct: 360 MRIAQEEIFGPVLSVIPFKDEDEAIELANDTEYGLAAGVFTNDLERALRVARRLEAGMVW 419
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
IN F G + S G GK+G YTETKTV
Sbjct: 420 INDYTTGDPEALPFGGFKQSGFG--REGGKEGLEEYTETKTV 459
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 118 bits (298), Expect = 1e-32
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPVL + +EAI + N YG AIFT + A A + ++ ++ G VG
Sbjct: 365 MRIAREEIFGPVLPVIRFKDEEEAIELANDTEYGLAAAIFTRDLARAFRVARRLEAGMVG 424
Query: 61 INVPIP-VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRE 108
IN ++ F G + S LG GK G +TE KTVT
Sbjct: 425 INDYTGGADIAYLPFGGVKQSGLG--REGGKYGLEEFTEVKTVTIKLGP 471
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 103 bits (259), Expect = 2e-27
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPVL + +EAI++ N YG +FT + A + ++ + G V
Sbjct: 266 MPIAQEEIFGPVLPVIRFKDEEEAIALANDTEYGLTAGVFTRDLNRALRVAERLRAGTVY 325
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN F G + S +G G G YT TKTV
Sbjct: 326 INDSSIGVGPEAPFGGVKNSGIGREG--GPYGLEEYTRTKTVV 366
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 101 bits (254), Expect = 1e-26
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPVL + +EAI + N YG +FT + A + ++ ++ G V
Sbjct: 331 MPIAQEEIFGPVLPVIPFKDEEEAIELANDTEYGLAAGVFTRDLERALRVAERLEAGTVW 390
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN F G + S +G G G YTE KTVT
Sbjct: 391 INDYSVGAEPSAPFGGVKQSGIGREG--GPYGLEEYTEPKTVT 431
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 87.9 bits (219), Expect = 2e-21
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M EE FGPV + DT DE I+ N PYG +FT + A A + ++ ++ G VG
Sbjct: 351 MLIMNEETFGPVAPIIPFDTEDEVIARANDTPYGLAAYVFTRDLARAWRVAEALEAGMVG 410
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVTQ 104
IN + P F G + S LG E GK+G Y ETK V+
Sbjct: 411 INTGLISDAEAP-----FGGVKESGLGREG---GKEGLEEYLETKYVSL 451
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 81.8 bits (203), Expect = 2e-19
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ +EEIFGPV+ + D +EAI + N PYG ++T + A + ++ ++ G V
Sbjct: 355 SRVAQEEIFGPVVTVIPFDDEEEAIELANDTPYGLAAYVWTRDLGRAHRVARRLEAGTVW 414
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N + L F G + S +G E G FYTE K V
Sbjct: 415 VNCWLVRDLRT-PFGGVKASGIGREG---GDYSLEFYTELKNVC 454
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 81.1 bits (201), Expect = 4e-19
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPV + V DEA++I N +G I T + A F + ++ G V
Sbjct: 371 MRIAREEIFGPVAAVIRVRDYDEALAIANDTEFGLSAGIVTTSLKHATHFKRRVEAGVVM 430
Query: 61 INVP-----IPVPLSMFSFTGSRGSFLGENHFYGKQGFY---FYTETKTV 102
+N+P VP F G +GS G +QG FYT KTV
Sbjct: 431 VNLPTAGVDYHVP-----FGGRKGSSYG----PREQGEAALEFYTTIKTV 471
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 80.7 bits (200), Expect = 4e-19
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN--- 62
EEIFGPVL + D EAI++ N YG ++T +G A + ++ + GQV +N
Sbjct: 358 EEIFGPVLAVMPFDDEAEAIALANGTDYGLVAGVWTRDGDRALRVARRLRAGQVFVNNYG 417
Query: 63 ----VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
+ +P F G + S G G + Y YT+TKTV
Sbjct: 418 AGGGIELP-------FGGVKKS--GHGREKGLEALYNYTQTKTVA 453
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 75.5 bits (186), Expect = 3e-17
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPVL LT DT+DEAI++ N YG +++ + TA ++ I G V
Sbjct: 354 MAIAREEIFGPVLSVLTFDTVDEAIALANDTVYGLSAGVWSKDIDTALTVARRIRAGTVW 413
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N + + F G + S +G E G+ G YTE KTV
Sbjct: 414 VNTFLDGSPEL-PFGGFKQSGIGREL---GRYGVEEYTELKTVH 453
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 74.8 bits (185), Expect = 6e-17
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M Y EE+FGPV + V +EAI++ N +P+G G ++FT + A + ++ ++ G V
Sbjct: 329 MPAYDEELFGPVAAVIKVKDEEEAIALANDSPFGLGGSVFTTDLERAERVARRLEAGMVF 388
Query: 61 IN 62
IN
Sbjct: 389 IN 390
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 75.0 bits (185), Expect = 6e-17
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPVL + +LDEAI + N + YG + I+T N TA + + E++ G+
Sbjct: 368 MEIVQEEIFGPVLPVVKFSSLDEAIELANDSEYGLTSYIYTENLNTAMRATNELEFGETY 427
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
IN + F G + S LG GK G Y +TK V
Sbjct: 428 INRENFEAMQGFH-AGWKKSGLGGAD--GKHGLEEYLQTKVV 466
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 74.8 bits (185), Expect = 6e-17
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPVL + D DEAI+I N PYG +++ + AR ++ + GQV
Sbjct: 367 MTIAREEIFGPVLSIIPYDDEDEAIAIANDTPYGLAGYVWSADPERARAVARRLRAGQVH 426
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN P + F G + S G E +G+ G + E K++
Sbjct: 427 INGAAFNPGA--PFGGYKQSGNGRE---WGRYGLEEFLEVKSIQ 465
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 74.5 bits (184), Expect = 7e-17
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M Y EE FGPV+ + V +EA+ I N + YG A+FT + A A ++ I+ G V
Sbjct: 331 MDIYSEESFGPVVSIIRVKDEEEAVRIANDSEYGLSAAVFTRDLARALAVAKRIESGAVH 390
Query: 61 INVPIPVPLSM-------FSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN M G + S G F GK G +TETK +T
Sbjct: 391 IN-------GMTVHDEPTLPHGGVKSS--GYGRFNGKWGIDEFTETKWIT 431
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 74.6 bits (184), Expect = 7e-17
Identities = 38/110 (34%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK KEEIFGPV+ L T DE I N YG +FT + A + S+ + G V
Sbjct: 376 MKIAKEEIFGPVVTILKFKTEDEVIERANDTEYGLAAGVFTKDINKALRVSRALKAGTVW 435
Query: 61 IN------VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N +P F G + S G E G++G YT+ K VT
Sbjct: 436 VNTYNVFDAAVP-------FGGFKQSGFGREL---GEEGLEEYTQVKAVT 475
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 74.3 bits (183), Expect = 9e-17
Identities = 39/103 (37%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ KEEIFGPV T+DE I N YG A+FT + A FS + G V
Sbjct: 380 MRIAKEEIFGPVQQIFKFKTIDEVIERANNTTYGLAAAVFTKDIDKAITFSNALRAGTVW 439
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
+N V F G + S G G+ G YTE KTVT
Sbjct: 440 VNCYNVVS-PQAPFGGYKMSGNGRE--LGEYGLQEYTEVKTVT 479
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 74.3 bits (183), Expect = 1e-16
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ + EE FGPV+ V DEAI + N YG +++T +GA R+ + + G V
Sbjct: 351 MELFAEETFGPVVSIYRVADDDEAIELANDTDYGLNASVWTRDGARGRRIAARLRAGTVN 410
Query: 61 IN-------VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQ 104
+N I P+ G + S LG H G +G YTET+TV
Sbjct: 411 VNEGYAAAWASIDAPMG-----GMKDSGLGRRH--GAEGLLKYTETQTVAV 454
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 72.2 bits (178), Expect = 4e-16
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN-- 62
+EE+FGPVL + D +EAI++ N + YG I+T + A A + ++ I+ G V +N
Sbjct: 361 QEEVFGPVLSVIPFDDEEEAIALANDSEYGLAAGIWTRDLARAHRVARAIEAGTVWVNTY 420
Query: 63 --VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTV 102
+ P F G + S +G EN G + YT+TK+V
Sbjct: 421 RALSPSSP-----FGGFKDSGIGREN---GIEAIREYTQTKSV 455
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 71.8 bits (177), Expect = 7e-16
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPI 65
EEIFGPVL + D D+A+ I N + YG +++T + ++ I G VG+N
Sbjct: 377 EEIFGPVLSVIPYDDEDDAVRIANDSDYGLSGSVWTADVERGLAVARRIRTGTVGVNGFR 436
Query: 66 PVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
+ F G + S +G G +G Y ETK++
Sbjct: 437 LDFGA--PFGGFKQSGIGREG--GPEGLDAYLETKSIY 470
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 71.3 bits (175), Expect = 1e-15
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ KEEIFGPV+V T +EAI N YG A+FT + A + ++E++ G V
Sbjct: 382 MRIVKEEIFGPVVVISKFKTYEEAIKKANDTTYGLAAAVFTKDIRRAHRVARELEAGMVW 441
Query: 61 INVP----IPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
IN + VP F +G G LGE G YT+TK V
Sbjct: 442 INSSNDSDVGVPFGGFKMSGI-GRELGEY------GLETYTQTKAV 480
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 71.1 bits (175), Expect = 1e-15
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPVL +T D+ +EA+++ N + YG +++T++ + A + ++ + G V
Sbjct: 362 MRIAREEIFGPVLSVITFDSEEEAVALANDSVYGLAASVWTSDLSRAHRVARRLRAGTVW 421
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+N I P F G + S G + YTE KT
Sbjct: 422 VNCFDEGDITTP-----FGGFKQSGNGRD--KSLHALDKYTELKTT 460
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 70.5 bits (173), Expect = 2e-15
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ ++EEIFGPVL +T +EAI+I N YG G ++T + A + ++ I G+V
Sbjct: 378 MRIFQEEIFGPVLAVITFKDEEEAIAIANDTEYGLGGGVWTRDINRALRVARGIQTGRVW 437
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETK 100
+N P + F G + S +G E H K Y +TK
Sbjct: 438 VNCYHQYP-AHAPFGGYKKSGIGRETH---KMMLDHYQQTK 474
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 69.9 bits (172), Expect = 3e-15
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EE FGPV+ V +DEA+ N PYG +++T + A R + I G V
Sbjct: 387 MELAREETFGPVVSVYPVADVDEAVERANDTPYGLNASVWTGDTARGRAIAARIRAGTVN 446
Query: 61 INVP-------IPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQ 104
+N + P+ G + S LG H G +G YTE++T+
Sbjct: 447 VNEGYAAAWGSVDAPMG-----GMKDSGLGRRH--GAEGLLKYTESQTIAT 490
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 69.9 bits (172), Expect = 3e-15
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EE FGPVL + V DEAI++ N + YG ++F+ + A A ++ ++ G V
Sbjct: 351 MDVMREETFGPVLPVMPVADEDEAIALANDSRYGLSASVFSRDLARAEAIARRLEAGAVS 410
Query: 61 IN 62
IN
Sbjct: 411 IN 412
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 68.9 bits (169), Expect = 7e-15
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPI 65
EE FGPV + V LDEAI+I N YG + + TN+ T ++ + +D G V +N
Sbjct: 354 EETFGPVAPVIRVKDLDEAIAISNSTAYGLSSGVCTNDLDTIKRLVERLDVGTVNVN--- 410
Query: 66 PVP---LSMFSFTGSRGSFLGENHFYGKQG----FYFYTETKTVT 103
VP + F G + S LG GK+G T KT +
Sbjct: 411 EVPGFRSELSPFGGVKDSGLG-----GKEGVREAMKEMTNVKTYS 450
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 68.8 bits (169), Expect = 8e-15
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ EE FGPVL + V+ ++EAI + NK+ YG +IFT + ARK + ++ G V
Sbjct: 371 MRLAWEEPFGPVLPIIRVNDIEEAIELANKSNYGLQASIFTKDINKARKLADALEVGTVN 430
Query: 61 IN 62
IN
Sbjct: 431 IN 432
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 68.7 bits (169), Expect = 9e-15
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M ++EEIFGPV + D +EA+ + N YG A+FT + A F++ ++ G V
Sbjct: 330 MPIFREEIFGPVAPVIPFDDDEEAVELANDTEYGLSAAVFTRDLERAMAFAERLETGMVH 389
Query: 61 IN 62
IN
Sbjct: 390 IN 391
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 68.4 bits (168), Expect = 1e-14
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK EE+F PV+ DTLDEAI++ N +PYG +FTN+ A K ++E++ G V
Sbjct: 352 MKVVCEEVFAPVVSLNPFDTLDEAIAMANDSPYGLQAGVFTNDLQKALKAARELEVGGVM 411
Query: 61 IN 62
IN
Sbjct: 412 IN 413
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 66.9 bits (164), Expect = 3e-14
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPI 65
EEIFGPVLV + D DEA+ I N + YG +++ + A + ++ I G VGIN
Sbjct: 364 EEIFGPVLVVIPYDDDDEAVRIANDSDYGLSGGVWSADVDRAYRVARRIRTGSVGIN--- 420
Query: 66 PVPLSMFS----FTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+ F G + S LG G +G + ETK++
Sbjct: 421 --GGGGYGPDAPFGGYKQSGLGRE--NGIEGLEEFLETKSI 457
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 67.0 bits (164), Expect = 4e-14
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ ++EEIFGPVL + T DEAI++ N + YG A+ + + + ++ ++ G V
Sbjct: 356 SRIWREEIFGPVLCVRSFATEDEAIALANDSEYGLAAAVISRDAERCDRVAEALEAGIVW 415
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQ 104
IN P + G + S +G G+ G Y E K +T+
Sbjct: 416 INCSQPC-FPQAPWGGYKRSGIGRE--LGEWGLDNYLEVKQITR 456
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 66.6 bits (163), Expect = 5e-14
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M ++EE+FGPV T +EAI+I N G IFT + A + S+ ++ G VG
Sbjct: 394 MLIFREEVFGPVAPLTRFKTEEEAIAIANDTEAGLAAYIFTRDLQRAWRVSEALEYGIVG 453
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+N + + + F G + S LG K G Y E K V
Sbjct: 454 VNEGL-ISTEVAPFGGVKQSGLGREG--SKYGIDEYLEIKYV 492
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 66.3 bits (162), Expect = 6e-14
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ ++EEIFGPVL T +EA+ I N YG G ++T +G TA + + I G+V
Sbjct: 377 MRIFQEEIFGPVLAVTTFKDEEEALEIANDTLYGLGAGVWTRDGNTAYRMGRGIQAGRVW 436
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENH 86
N P + +F G + S +G ENH
Sbjct: 437 TNCYHLYP-AHAAFGGYKQSGIGRENH 462
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 66.4 bits (163), Expect = 6e-14
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKF--SQEIDCGQ 58
+ +EE F P+L + D+L+EAI+I N P G ++IFT + A ++ + DCG
Sbjct: 372 ARIVQEETFAPILYVIKFDSLEEAIAINNDVPQGLSSSIFTEDLREAFRWLGPKGSDCGI 431
Query: 59 VGINVP 64
V +N+P
Sbjct: 432 VNVNIP 437
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 65.8 bits (161), Expect = 9e-14
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPV+ L DT +E I N YG +FT + A + ++ G
Sbjct: 354 MTIVREEIFGPVMSILPFDTEEEVIRRANDTTYGLAAGVFTRDLQRAHRVIAQLQAGTCW 413
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTV 102
IN P+ VP F G + S G EN G YT+ KTV
Sbjct: 414 INTYNISPVEVP-----FGGYKQSGFGREN---GTAALEHYTQLKTV 452
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 65.8 bits (161), Expect = 1e-13
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK +EE+FGPV+V + +EA+ I N YG G ++F + AR+ + +++ G V
Sbjct: 361 MKIAQEEVFGPVMVVMKASDDEEAVEIANSTEYGLGASVFGKDIKRARRIASQLETGMVA 420
Query: 61 IN 62
IN
Sbjct: 421 IN 422
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 65.2 bits (159), Expect = 1e-13
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPVL + +EAI N YG ++TN+ A + + ++ G +
Sbjct: 376 MRIAQEEIFGPVLTVIPFKDEEEAIEKANDTRYGLAGYVWTNDVGRAHRVALALEAGMIW 435
Query: 61 INVP----IPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+N +P P F G + S +G G F FYTETK V
Sbjct: 436 VNSQNVRHLPTP-----FGGVKASGIGREG--GTYSFDFYTETKNV 474
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 63.6 bits (155), Expect = 5e-13
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M EE FGPVL + DTL+EAI++ N + YG ++I+T N A K + + G+
Sbjct: 306 MSIMHEETFGPVLPVVAFDTLEEAIAMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETY 365
Query: 61 IN 62
IN
Sbjct: 366 IN 367
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 63.5 bits (155), Expect = 6e-13
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M + EEIFGPV D+ +EA+++ N YG I + + A + + G +
Sbjct: 341 MPAFDEEIFGPVAPVTVFDSDEEAVALANDTEYGLSAGIISRDVGRAMALADRLRTGMLH 400
Query: 61 IN 62
IN
Sbjct: 401 IN 402
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 63.2 bits (154), Expect = 7e-13
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN- 62
+EE FGPV+ + + +E I +IN P+G +++TNN + A ++ I+ G V +N
Sbjct: 378 MREETFGPVVSFVPYEDEEELIQLINDTPFGLTASVWTNNLSKALRYIPRIEAGTVWVNM 437
Query: 63 ---VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
+ VP F G + S +G +G YTE K+V
Sbjct: 438 HTFLDPAVP-----FGGMKQSGIGRE--FGSAFIDDYTELKSVM 474
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 63.5 bits (155), Expect = 7e-13
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPV+ + V +L+EAI I N YG +AI+T + A + ++++ G
Sbjct: 373 MRIAQEEIFGPVVALIEVSSLEEAIEIANDTEYGLSSAIYTEDVNKAFRARRDLEAGITY 432
Query: 61 INVP 64
+N P
Sbjct: 433 VNAP 436
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 62.4 bits (152), Expect = 1e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M KEE+FGPVL V +EA+ I N YG ++FTN+ A K ++E++ G V
Sbjct: 355 MIVMKEEVFGPVLPIAKVKDDEEAVEIANSTEYGLQASVFTNDINRALKVARELEAGGVV 414
Query: 61 IN 62
IN
Sbjct: 415 IN 416
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 62.4 bits (152), Expect = 2e-12
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPVL L E ++ N YG AI+TN+ + A + ++ ++ G V
Sbjct: 354 MRIAREEIFGPVLSVLRWRDEAEMVAQANGVEYGLTAAIWTNDISQAHRTARRVEAGYVW 413
Query: 61 IN--------VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN P F G + S +G + YT+ K V
Sbjct: 414 INGSSRHFLGAP---------FGGVKNSGIGREE--CLEELLSYTQEKNVN 453
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 62.4 bits (152), Expect = 2e-12
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 2 KCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGI 61
+ EEIFGP D+ +E I++ N PYG +++T + + A + +++++ G V +
Sbjct: 380 RVVTEEIFGPCCHIAPFDSEEEVIALANDTPYGLAASVWTEDLSRAHRVARQMEVGIVWV 439
Query: 62 NVPIPVPLSMF------SFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
N S F F GS+ S +G G FYTE V
Sbjct: 440 N-------SWFLRDLRTPFGGSKLSGIGREG--GVHSLEFYTELTNV 477
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 61.6 bits (150), Expect = 3e-12
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 2 KCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGI 61
+ +EEIFGPVLV LT T EA+++ N PYG ++++ N + A + + + G V I
Sbjct: 381 RIAQEEIFGPVLVVLTFRTAKEAVALANNTPYGLAASVWSENLSLALEVALSLKAGVVWI 440
Query: 62 NVPIPVPLSMFS----FTGSRGSFLGENHFYGKQGFYFYTETK 100
N ++F F G R S G GK+G Y Y
Sbjct: 441 NG-----HNLFDAAAGFGGYRESGFGREG--GKEGLYEYLRPS 476
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 61.2 bits (149), Expect = 3e-12
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPV + D +EA+ + N YG A+FT++ +F++ ID G
Sbjct: 362 MEIAREEIFGPVAPIIKADDEEEALELANDTEYGLSGAVFTSDLERGVQFARRIDAGMTH 421
Query: 61 INVPIPV---PLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN PV P F G + S LG F G+ +T K ++
Sbjct: 422 IN-DQPVNDEPHVPFG--GEKNSGLGR--FNGEWALEEFTTDKWIS 462
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 61.2 bits (149), Expect = 4e-12
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
+EEIFGPVL T D EA+++ N YG +++T + A A + ++ I G V IN
Sbjct: 359 QEEIFGPVLTLETFDDEAEAVALANDTDYGLAASVWTRDLARAMRVARAIRAGTVWINDW 418
Query: 65 IPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQ 104
+ + G R S LG H G + E K +
Sbjct: 419 NKL-FAEAEEGGYRQSGLGRLH--GVAALEDFIEYKHIYL 455
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 60.8 bits (148), Expect = 6e-12
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ ++EE FGPV + +EA+ + N YG AI TN+ A K ++ ++ G V
Sbjct: 350 MRIFREETFGPVTSVIPAKDAEEALELANDTEYGLSAAILTNDLQRAFKLAERLESGMVH 409
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN P + + F G + S G G+ +TE K +T
Sbjct: 410 INDPTILDEAHVPFGGVKASGFGR--EGGEWSMEEFTELKWIT 450
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 60.6 bits (147), Expect = 7e-12
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK KEEIFGPV+ + T +EAI N + YG A+FTNN A + + + G V
Sbjct: 379 MKIVKEEIFGPVVAVIKFKTEEEAIKRANDSTYGLAAAVFTNNINNAIRVANALKAGTVW 438
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+N + VP F G + S +G G+ YT+ K V
Sbjct: 439 VNCYNLLHHQVP-----FGGYKQSGIGRE--LGEYALENYTQIKAV 477
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 60.5 bits (147), Expect = 7e-12
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ Y EE+FGPV V +DEAI I N +G G+ +T + A +F +++ GQV
Sbjct: 356 MRLYTEEVFGPVASLYRVADIDEAIEIANATTFGLGSNAWTRDEAEQERFIDDLEAGQVF 415
Query: 61 IN 62
IN
Sbjct: 416 IN 417
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 60.1 bits (146), Expect = 9e-12
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
EE FGPV+ + D +EAI I N YG IFT + A K +++++ G V +N
Sbjct: 356 TEETFGPVVPIIRYDDFEEAIRIANSTDYGLQAGIFTRDLNVAFKAAEKLEVGGVMVNDS 415
Query: 65 IPVPLSMFSFTGSRGSFLGENHFYGKQGFYF----YTETKTVT 103
F G + S G++G + TE KTV
Sbjct: 416 SAFRTDWMPFGGVKES------GVGREGVPYAMEEMTEEKTVV 452
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 60.0 bits (146), Expect = 1e-11
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ EE+FGPV+ D DEA++ +N + +G +FT + A + E++ G V
Sbjct: 351 MEVNCEEVFGPVVTVEPYDDFDEALAAVNDSKFGLQAGVFTRDLEKALRAWDELEVGGVV 410
Query: 61 IN-VP 64
IN VP
Sbjct: 411 INDVP 415
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 60.0 bits (146), Expect = 1e-11
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPI 65
EEIFGPV+ D DEAI + N YG ++++T + A + S +D G V +N I
Sbjct: 355 EEIFGPVVTVQPFDDEDEAIELANDVEYGLASSVWTRDVGRAMRLSARLDFGTVWVNTHI 414
Query: 66 PVPLSMFSFTGSRGSFLGENHFYGKQ----GFYFYTETKTVT 103
P+ M G + S G YGK YT K V
Sbjct: 415 PLAAEM-PHGGFKQS--G----YGKDLSIYALEDYTRIKHVM 449
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 59.8 bits (146), Expect = 1e-11
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN-- 62
EE FGPVL L DE I+ N + YG G ++++++ A ++ ++ G V IN
Sbjct: 350 DEEQFGPVLPVLKYSDEDEVIARANDSEYGLGASVWSSDLERAEAVARRLEAGTVWINTH 409
Query: 63 --VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+ P F G + S +G +G +G YT+T+ +
Sbjct: 410 GALDPDAP-----FGGHKQSGIGVE--FGIEGLKEYTQTQVI 444
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 59.8 bits (146), Expect = 1e-11
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNP-----YGNGTAIFTNNGATARKFSQEID 55
M+ +EEIFGP+L LT D+LDEAI IN P Y F + A + +
Sbjct: 332 MRVMQEEIFGPILPILTYDSLDEAIDYINARPRPLALY-----YFGEDKAEQDRVLRRTH 386
Query: 56 CGQVGIN 62
G V IN
Sbjct: 387 SGGVTIN 393
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 58.6 bits (142), Expect = 3e-11
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPV + T DE I + N + YG G +FT + A + ++ ++ G+V
Sbjct: 373 MRVAQEEIFGPVATVIKFKTEDEVIDMANDSEYGLGGGVFTKDINRALRVARAVETGRVW 432
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTV 102
+N +P F G + S +G E H K YT+ K +
Sbjct: 433 VNTYNQIPAGA-PFGGYKKSGIGRETH---KSMLDAYTQMKNI 471
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 58.3 bits (141), Expect = 4e-11
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPV+ LT DE I+ N YG +FT + A + + +++ G V
Sbjct: 371 MTIVREEIFGPVMTVLTFSDEDEVIARANDTEYGLAGGVFTADLGRAHRVADQLEAGTVW 430
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETK 100
IN P F G + S +G EN GK YTE K
Sbjct: 431 INTYNLYPAEA-PFGGYKQSGIGREN---GKAALAHYTEVK 467
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 58.2 bits (141), Expect = 4e-11
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M KEE FGP+ D +E I+I N G F+ + + + ++ ++ G VG
Sbjct: 352 MLVSKEETFGPLAPVFKFDDEEEVIAIANDTEVGLAAYFFSRDLSRIWRVAEALEYGMVG 411
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETK 100
IN + + F G + S LG K G Y ETK
Sbjct: 412 INTGLISNVVA-PFGGVKQSGLGREG--SKYGIEEYLETK 448
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 58.3 bits (142), Expect = 4e-11
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNP-----YGNGTAIFTNNGATARKFSQEIDCGQV 59
+EEIFGP+L LT D LDEAI IN P Y +F+ + A + E G V
Sbjct: 328 QEEIFGPILPILTYDDLDEAIEFINSRPKPLALY-----LFSEDKAVQERVLAETSSGGV 382
Query: 60 GIN-VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+N V + + F G S +G H GK GF ++ K+V
Sbjct: 383 CVNDVLLHAAIPNLPFGGVGNSGMGAYH--GKAGFDTFSHLKSV 424
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 58.0 bits (141), Expect = 6e-11
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
+EEIFGPVL + DEA+ I N YG +F+ + + +E + G + N
Sbjct: 411 QEEIFGPVLAVIKAKDFDEALEIANDTEYGLTGGVFSRSPEHLERARREFEVGNLYAN 468
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 57.7 bits (140), Expect = 7e-11
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPVL DT +EAI + N PYG A++T + A A + ++ + G V
Sbjct: 372 MRIVQEEIFGPVLTVERFDTEEEAIRLANDTPYGLAGAVWTKDIARANRVARRLRAGTVW 431
Query: 61 IN 62
IN
Sbjct: 432 IN 433
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 57.1 bits (138), Expect = 1e-10
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
+EEIFGPVL + D D+A+ I N +PYG +F + A + + G V +N
Sbjct: 382 REEIFGPVLTVIAHDGDDDAVRIANDSPYGLSGTVFGADPERAAAVAARVRTGTVNVNGG 441
Query: 65 I----PVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+ P F G + S +G G GF Y ETK +
Sbjct: 442 VWYSADAP-----FGGYKQSGIGRE--MGVAGFEEYLETKLI 476
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 56.6 bits (137), Expect = 2e-10
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
+EEIFGPVL + DE I++ N + YG ++T + A + + ++ G V +N
Sbjct: 360 REEIFGPVLCAIPWKDEDEVIAMANDSHYGLAAYVWTRDLGRALRAAHALEAGWVQVNQG 419
Query: 65 IPVPLSMFSFTGSRGSFLGE--------NHFYGKQGFYFYTETKTVT 103
S+ G + S LG HF T+ KTV
Sbjct: 420 G-GQQPGQSYGGFKQSGLGREASLEGMLEHF---------TQKKTVN 456
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 56.3 bits (136), Expect = 2e-10
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ ++EE+FGPVL T T DEAI + N + YG A+ +N+ + S+ G V
Sbjct: 387 MQIWREEVFGPVLCVKTFSTEDEAIELANDSHYGLAGAVISNDLERCERVSEAFQAGIVW 446
Query: 61 INVPIP 66
IN P
Sbjct: 447 INCSQP 452
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 55.7 bits (135), Expect = 3e-10
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPV+ LT D DE I+ N YG +FT + + A + +++ G
Sbjct: 379 MTIVREEIFGPVMSVLTFDDEDEVIARANDTEYGLAAGVFTADLSRAHRVIHQLEAGICW 438
Query: 61 INV----PIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTV 102
IN P +P G + S +G EN G YT+ K+V
Sbjct: 439 INTWGESPAEMP-----VGGYKQSGIGREN---GIATLEHYTQIKSV 477
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 55.2 bits (134), Expect = 5e-10
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN-V 63
+EEIFGP+L LT DTLDEAI II P +F+ + +K + + G IN
Sbjct: 328 QEEIFGPILPVLTYDTLDEAIEIIKSRPKPLALYLFSEDKKVEKKVLENLSFGGGCINDT 387
Query: 64 PIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+ + F G S +G H GK F ++ K++
Sbjct: 388 IMHLANPYLPFGGVGNSGMGSYH--GKYSFDTFSHKKSI 424
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 54.7 bits (132), Expect = 7e-10
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN-VP 64
EEIFGP+L +TV ++E+I IIN P +FT N R+ E G V N
Sbjct: 335 EEIFGPLLPIITVKKIEESIEIINSRPKPLAAYVFTKNKELKRRIVAETSSGGVTFNDTV 394
Query: 65 IPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+ + F G S G H GK F ++ K V
Sbjct: 395 VQYAIDTLPFGGVGESGFGAYH--GKFSFDAFSHKKAV 430
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 54.5 bits (131), Expect = 1e-09
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKF--SQEIDCGQVGIN 62
KEE+FGPVL + TL+EAI I N P G ++IFT N T K+ DCG V +N
Sbjct: 394 KEELFGPVLYVMKFKTLEEAIEINNSVPQGLSSSIFTRNPETIFKWIGPLGSDCGIVNVN 453
Query: 63 VP 64
+P
Sbjct: 454 IP 455
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 54.3 bits (131), Expect = 1e-09
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 2 KCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGI 61
+EEIFGP+L LT + +DE + IN P F + + G V I
Sbjct: 336 PLMQEEIFGPILPILTYENIDEVLEFINSRPKPLALYYFGEDKRHKELVLENTSSGAVVI 395
Query: 62 N 62
N
Sbjct: 396 N 396
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 54.0 bits (130), Expect = 1e-09
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M ++EIFGPV L LDE I N YG +FT N TA S+ + G V
Sbjct: 430 MLIAQDEIFGPVQSILKFKDLDEVIRRANNTRYGLAAGVFTQNLDTANTLSRALRVGTVW 489
Query: 61 IN 62
+N
Sbjct: 490 VN 491
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 53.6 bits (129), Expect = 2e-09
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGPV+ + +EA+ I N YG ++T + A + + + G V
Sbjct: 351 MRIAQEEIFGPVVSVMRFRDEEEALRIANGTEYGLAAGVWTRDLGRAHRVAAALKAGTVW 410
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
IN P F G + S G G++ YTE K+V
Sbjct: 411 INTYNRFDPGSP-----FGGYKQSGFGREM--GREALDEYTEVKSV 449
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 53.4 bits (129), Expect = 2e-09
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKF-----SQEID 55
KEE F P+L L DTL+EAI+ N+ P G ++IFT + A ++ S D
Sbjct: 368 APIVKEETFAPILYVLKFDTLEEAIAWNNEVPQGLSSSIFTTDLRNAFRWLGPKGS---D 424
Query: 56 CGQVGINVP 64
CG V +N+
Sbjct: 425 CGIVNVNIG 433
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 53.3 bits (128), Expect = 3e-09
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK ++EIFGPV L T+DE I N + YG +F+ N TA S+ + G V
Sbjct: 376 MKIARDEIFGPVQSILKFKTVDEVIKRANNSKYGLAAGVFSKNIDTANTLSRALKAGTVW 435
Query: 61 IN 62
+N
Sbjct: 436 VN 437
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 53.0 bits (128), Expect = 3e-09
Identities = 25/76 (32%), Positives = 34/76 (44%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
EEIFGP+L D DEAI++ N +G + +++ A +F I G V N P
Sbjct: 335 DEEIFGPLLQVYRYDDFDEAIALANATRFGLSAGLLSDDEALFERFLARIRAGIVNWNRP 394
Query: 65 IPVPLSMFSFTGSRGS 80
S F G S
Sbjct: 395 TTGASSTAPFGGVGLS 410
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 52.5 bits (126), Expect = 4e-09
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EE FGPV + +D+AI I N YG + + TN +F E+ G V
Sbjct: 368 MTLVREETFGPVSPVIRFCDIDDAIRISNSTAYGLSSGVCTNRLDYITRFIAELQVGTVN 427
Query: 61 I-NVPIPVPLSMFSFTGSRGSFLGENHFYGKQG----FYFYTETKTVTQLW 106
+ VP L + F G + S LG K+G +T KT + W
Sbjct: 428 VWEVP-GYRLELTPFGGIKDSGLGY-----KEGVQEAMKSFTNLKTYSLPW 472
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 51.5 bits (124), Expect = 1e-08
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK +EEIFGPVL +T + LDE I IN P +F+ + A K G V
Sbjct: 331 MKIMQEEIFGPVLPIITYEDLDEVIEYINAKPKPLALYVFSKDKANVNKVLARTSSGGVV 390
Query: 61 IN 62
+N
Sbjct: 391 VN 392
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 50.3 bits (120), Expect = 2e-08
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+EEIFGPVLV + ++A+ + N + YG G A++T + + A + S+ + G V
Sbjct: 391 ASLSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVF 450
Query: 61 IN 62
+N
Sbjct: 451 VN 452
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 50.3 bits (121), Expect = 2e-08
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EE FGPV+ + V + EAI+++N + YG +++T + A A ++++ G V
Sbjct: 352 MRVMREETFGPVVGIMKVKSDAEAIALMNDSEYGLTASVWTKDIARAEALGEQLETGTVF 411
Query: 61 IN 62
+N
Sbjct: 412 MN 413
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 49.8 bits (119), Expect = 3e-08
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK ++EIFGPV+ + T++EAI N YG I T + A S+ I G +
Sbjct: 393 MKIAQDEIFGPVMSLMKFKTVEEAIKKANNTKYGLAAGIVTKDLDVANTVSRSIRAGTIW 452
Query: 61 IN 62
+N
Sbjct: 453 VN 454
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 49.9 bits (119), Expect = 4e-08
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M ++EE+FGPV + A+ + N + +G IFT + AR+ + ++CG V
Sbjct: 359 MTAFREELFGPVAAITVAKDAEHALELANDSEFGLSATIFTTDETQARQMAARLECGGVF 418
Query: 61 IN 62
IN
Sbjct: 419 IN 420
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 49.5 bits (119), Expect = 5e-08
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINV 63
+ E+FGPV+ D D+A+ N + YG ++++T + A + S + G +N
Sbjct: 375 VQREVFGPVVSVTPFDDEDQAVRWANDSDYGLASSVWTRDVGRAHRVSARLQYGCTWVNT 434
Query: 64 PIP 66
Sbjct: 435 HFM 437
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 49.3 bits (118), Expect = 5e-08
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPI 65
+EIFGPV+ + D LDEAI+ N P A+FT + A K + +D V +N
Sbjct: 359 QEIFGPVVCVYSYDDLDEAIAQANSLPVAFQAAVFTKDLDVALKAVRRLDATAVMVNDHT 418
Query: 66 PVPLSMFSFTGSRGSFLG 83
+ F G R S G
Sbjct: 419 AFRVDWMPFAGRRQSGYG 436
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 49.3 bits (118), Expect = 6e-08
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN-VP 64
EEIFGP+L +TV ++++I+ IN P FTNN R+ E G V N
Sbjct: 345 EEIFGPLLPIITVKKIEDSIAFINSKPKPLAIYAFTNNEKLKRRILSETSSGSVTFNDAI 404
Query: 65 IPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQ 104
I F G S G H GK F ++ K V +
Sbjct: 405 IQYACDSLPFGGVGESGFGRYH--GKYSFDTFSHEKAVLR 442
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 48.8 bits (117), Expect = 8e-08
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINK--NP---YGNGTAIFTNNGATARKFSQEIDCGQV 59
+EEIFGP+L +TV+ LDEAI IN P Y +F+NN K G V
Sbjct: 328 QEEIFGPILPIVTVNNLDEAIEFINSREKPLALY-----VFSNNKKVINKILSNTSSGGV 382
Query: 60 GIN-VPIPVPLSMFSFTGSRGSFLGENHFYGKQGF 93
+N + L F G S +G H GK F
Sbjct: 383 CVNDTIMHYTLDSLPFGGVGNSGMGAYH--GKYSF 415
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 47.6 bits (114), Expect = 2e-07
Identities = 37/99 (37%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN-V 63
EE+FGPVL + VD LDEAI +IN IFT++ + G V IN
Sbjct: 338 SEELFGPVLPIIKVDDLDEAIKVINSRDTPLALYIFTDDKSEIDHILTRTRSGGVVINDT 397
Query: 64 PIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
I V + F G S G H GK GF +T +TV
Sbjct: 398 LIHVGVDNAPFGGVGDSGYGAYH--GKYGFDTFTHERTV 434
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 47.2 bits (113), Expect = 3e-07
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
+EEIFGPV+ + D A+ I N YG A+ +NN K +E G + N
Sbjct: 413 QEEIFGPVVAFIKAKDFDHALEIANNTEYGLTGAVISNNREHLEKARREFHVGNLYFN-- 470
Query: 65 IPVPLSMFSFTGSRGSFLGENHFYG--------KQG----FYFYTETKTVTQLW 106
G G+ +G + F G K G + + KTV++++
Sbjct: 471 ----------RGCTGAIVGYHPFGGFNMSGTDSKAGGPDYLLLFLQAKTVSEMF 514
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 46.8 bits (112), Expect = 5e-07
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 17 TVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
VD+LDEAI+ IN G+ AI T + A A +F E+D V +N
Sbjct: 322 VVDSLDEAIAHINTYGSGHSDAIITEDYANAERFVNEVDSAAVYVN 367
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 46.7 bits (112), Expect = 5e-07
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 17 TVDTLDEAISIINKNPYGNG-T-AIFTNNGATARKFSQEID 55
VD+LDEAI+ IN+ YG+G T AI T N TA +F +E+D
Sbjct: 316 VVDSLDEAIAHINR--YGSGHTEAIVTENYETAERFLREVD 354
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 46.2 bits (111), Expect = 6e-07
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 17 TVDTLDEAISIINKNPYGNG-T-AIFTNNGATARKFSQEIDCGQVGIN 62
VD+LDEAI+ IN+ YG+G T AI T + A A +F E+D V +N
Sbjct: 322 VVDSLDEAIAHINR--YGSGHTEAIVTEDYAAAERFLNEVDSAAVYVN 367
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 45.4 bits (107), Expect = 1e-06
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN-VP 64
EEIFGP+L LT++ L+E+ +I P +FT+N +F+ + G + +N +
Sbjct: 346 EEIFGPLLPILTLNNLEESFDVIRSRPKPLAAYLFTHNKKLKERFAATVSAGGIVVNDIA 405
Query: 65 IPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
+ + L F G S +G H GK F ++ K V
Sbjct: 406 VHLALHTLPFGGVGESGMGAYH--GKFSFDAFSHKKAV 441
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 45.5 bits (108), Expect = 1e-06
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ EE FGPVL + +++++E I N + +G +FT + A S ++ G V
Sbjct: 385 MRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQ 444
Query: 61 INVPIPVPLSMFSFTGSRGSFLG 83
IN F F G + S +G
Sbjct: 445 INSAPARGPDHFPFQGLKDSGIG 467
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 44.9 bits (107), Expect = 2e-06
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 3 CYKEEIFGPVL--VCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
E+FGP+L + + LDEAI IN YG I + + + + ++ G +
Sbjct: 403 DLTTEVFGPILHVIRFKAEDLDEAIEDINATGYGLTLGIHSRDEREIEYWRERVEAGNLY 462
Query: 61 INVPI 65
IN I
Sbjct: 463 INRNI 467
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 44.7 bits (106), Expect = 2e-06
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPI 65
EE FGP+L + D DEAI+I N +G + +++ +F EI G V N P+
Sbjct: 372 EEHFGPLLQVIRYDDFDEAIAIANNTRFGLSAGLLSDDRELYDRFLLEIRAGIVNWNKPL 431
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 43.7 bits (103), Expect = 4e-06
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
+EEIFGPV+ + DEA+ I N YG + +NN + E + G + N
Sbjct: 410 QEEIFGPVVAFIRASDFDEALEIANNTEYGLTGGVISNNRDHINRAKAEFEVGNLYFNRN 469
Query: 65 IP------VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLW 106
I P F +G+ S G G + + KTVT+++
Sbjct: 470 ITGAIVGYQPFGGFKMSGT-DSKAG-----GPDYLALFMQAKTVTEMF 511
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 39.4 bits (92), Expect = 2e-04
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 5 KEEIFGPVLVCLTVDT--LDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
KEE FGP+++ D +D + N YG + +FT + A S +++ G V +N
Sbjct: 386 KEESFGPIMIISKFDDGDVDGVLQRANDTEYGLASGVFTKDINKALYVSDKLEAGTVFVN 445
Query: 63 V----PIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
+ P F G + S G++ G++ Y +TKTVT
Sbjct: 446 TYNKTDVAAP-----FGGFKQSGFGKD--LGEEALNEYLKTKTVT 483
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 39.0 bits (91), Expect = 2e-04
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
+ +E L V++L+ AI IN+ + AI T N A A +F +D V N
Sbjct: 301 FDKEFLSLDLSVKIVESLEAAIQHINQYGTQHSDAILTENKANAEQFQNGVDSAAVYHN 359
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 38.7 bits (90), Expect = 3e-04
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 5 KEEIFGPVLVCLTV--DTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
+EEIFGPVL + D EA+ + N PYG +++ + +E G + IN
Sbjct: 397 QEEIFGPVLSVIRYKDDDFAEALEVANSTPYGLTGGVYSRKREHLEEARREFHVGNLYIN 456
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 37.2 bits (87), Expect = 8e-04
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 7 EIFGPVLVCLTVDTLDEAISIINKNPYGNG---TAIFTNNGATARKFSQEI 54
E FGPV + D+L EAI + + G G ++ TN+ A AR+
Sbjct: 397 EAFGPVATLMPYDSLAEAIELAAR---GRGSLVASVVTNDPAFARELVLGA 444
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 37.2 bits (86), Expect = 8e-04
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 5 KEEIFGPVL--VCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
EE+FGPVL V LD+ + IN+ YG + + T R + G +N
Sbjct: 402 SEEVFGPVLHVVRYKARELDQIVDQINQTGYGLTMGVHSRIETTYRWIEKHARVGNCYVN 461
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 37.2 bits (87), Expect = 0.001
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPI 65
EE FGP+L + D DEAI + N +G + +++ +F EI G V N P+
Sbjct: 374 EEYFGPLLQVVRYDDFDEAIRLANNTRFGLSAGLLSDDREDYDQFLLEIRAGIVNWNKPL 433
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 36.2 bits (84), Expect = 0.002
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 KEEIFGPVL--VCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
+ E+FGPVL V D LDE I IN YG + T T ++ G + +N
Sbjct: 476 QREVFGPVLHVVRYKRDELDEVIDQINATGYGLTLGVHTRIDETIAHVTERAHAGNLYVN 535
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA
hydratase; Provisional.
Length = 675
Score = 34.5 bits (80), Expect = 0.009
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 7 EIFGPVLVCLTVDTLDEAISIINKNPYGNG---TAIFTNNGATARKFSQEI 54
E FGPV + D LDEAI + + G G ++ T + AR+
Sbjct: 401 EAFGPVSTLMPYDDLDEAIELAAR---GKGSLVASLVTADPEVARELVLGA 448
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 32.6 bits (74), Expect = 0.040
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
KEE FGP+ + I+ N +G + + + + + ++ G VGIN
Sbjct: 384 KEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTG 443
Query: 65 IPVPLSMFSFTGSRGSFLG-ENHFYG 89
I + + F G + S LG E YG
Sbjct: 444 I-ISNEVAPFGGIKASGLGREGSKYG 468
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 32.5 bits (75), Expect = 0.040
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 7 EIFGPVLVCLTVDTLDEAISIINK--NPYGNG-TA-IFTNNGATARKFSQEIDCGQVGIN 62
E PVL + +EA+ + G G TA I +N+ +F+ + ++ +N
Sbjct: 328 EKLSPVLAFYRAEDFEEALEKARELLEYGGAGHTAVIHSNDEEVIEEFALRMPVSRILVN 387
Query: 63 VP 64
P
Sbjct: 388 TP 389
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 32.3 bits (73), Expect = 0.054
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
++E+FGPV+ + D ++ ++ N + YG ++++T + A + S + G +N
Sbjct: 375 QKEVFGPVVSITSFDDEEQVVNWANDSQYGLASSVWTKDVGRAHRLSARLQYGCTWVN 432
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 31.7 bits (73), Expect = 0.072
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 5 KEEIFGPVL--VCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
+ E+FGP+L + LD+ I IN YG I + TA + + + G V +N
Sbjct: 924 EREVFGPILHVIRYKASDLDKVIDAINATGYGLTLGIHSRIEETADRIADRVRVGNVYVN 983
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 31.4 bits (72), Expect = 0.100
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 5 KEEIFGPVLVCLTV--DTLDEAISIINKNPYG 34
+ E+FGPVL + D LD I IN YG
Sbjct: 916 EREVFGPVLHVVRFKADELDRVIDDINATGYG 947
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 31.5 bits (72), Expect = 0.10
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 5 KEEIFGPVL--VCLTVDTLDEAISIINKNPYG 34
K E+FGPVL V + LDE I IN + YG
Sbjct: 1013 KREVFGPVLHVVRYNRNQLDELIEQINASGYG 1044
>gnl|CDD|237515 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol
dehydrogenase; Provisional.
Length = 862
Score = 31.3 bits (72), Expect = 0.11
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 11 PVLVCLTVDTLDEAISI----INKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVP 64
PVL ++A+ + G+ I+TN+ ++F + ++ +N P
Sbjct: 346 PVLAMYKAKDFEDAVEKAEKLVEFGGLGHTAVIYTNDDELIKEFGLRMKACRILVNTP 403
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 30.7 bits (69), Expect = 0.14
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 7 EIFGPVLVCLTV----DTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
E P+ V ++ A II + ++T+ F Q ID N
Sbjct: 294 ESMTPLECQFRVLDVISAVENAWMIIESGGGPHTRCVYTHKINKVDDFVQYIDTASFYPN 353
Query: 63 VP-IPVPLSMFSFTGSRGSFLGENHFYGKQG 92
+ R G N+ +G
Sbjct: 354 ESSKKGRGAFAGKGVERIVTSGMNNIFGAGV 384
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 30.6 bits (70), Expect = 0.18
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 5 KEEIFGPVLVCLTVD--TLDEAISIINK-NPYGNGTAIFTNNGATARKFSQE 53
EEIFGPVL +E + +++ +PY AIF A RK +E
Sbjct: 414 TEEIFGPVLTVYVYPDSDFEETLELVDTTSPYALTGAIF----AQDRKAIRE 461
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 29.3 bits (66), Expect = 0.58
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 13 LVCLT--VDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQV 59
L C VD + AI I+++ + I T + A F +++D V
Sbjct: 601 LACTVEIVDDVHAAIDHIHRHGSAHTDCIVTEDSEVAEIFLRQVDSAAV 649
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTA 38
EE+FGP + + D E +++ G TA
Sbjct: 349 EEVFGPASLVVRYDDAAELLAVAEALE-GQLTA 380
>gnl|CDD|191617 pfam06830, Root_cap, Root cap. The cells at the periphery of the
root cap are continuously sloughed off from the root
into the mucilage, and are thought to be programmed to
die.This family represents a conserved region
approximately 60 residues in length within plant root
cap proteins, which may be involved in the process.
Length = 57
Score = 26.1 bits (58), Expect = 1.4
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 92 GFYFYTETKTVT----QLWRESDVTHSKAAVSMPVM 123
GF FY + V Q +R V K SMPVM
Sbjct: 1 GFKFYDLSDDVHGVLGQTYRPDYVNPVKVGASMPVM 36
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 27.7 bits (62), Expect = 1.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 8 IFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARK 49
+ G VLV VD LD A+ + K G I T +G R
Sbjct: 621 LLGGVLV---VDDLDNALELAKKLRPGY--RIVTLDGDLVRP 657
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 27.2 bits (61), Expect = 2.3
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 33 YGNGTAIFTNNGATARKFSQEIDCGQVGINVPIPVPLSMFSF 74
+G A+ FS+ C G ++P P +FSF
Sbjct: 225 LADGLAVVEVMDDEELLFSENFACPVCGFSIPELEP-RLFSF 265
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 27.1 bits (60), Expect = 2.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 5 KEEIFGPVLVCLTV-----DTLDEAISIINK-NPYGNGTAIFTNNGATARK 49
KEEIFGPV LTV D E + +++ YG A+F + +
Sbjct: 414 KEEIFGPV---LTVYVYPDDKYKEILDLVDSTTSYGLTGAVFAKDRDAILE 461
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 27.1 bits (60), Expect = 3.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAI 25
Y EE FGP+ + D+ D +I
Sbjct: 440 YAEERFGPIAFVVATDSTDHSI 461
>gnl|CDD|221035 pfam11225, DUF3024, Protein of unknown function (DUF3024). This
family of proteins has no known function.
Length = 57
Score = 25.0 bits (55), Expect = 3.6
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 17 TVDTLDEAISIINKNPYG 34
L+ + + ++P G
Sbjct: 37 ESKDLEALLEELEEDPEG 54
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 26.7 bits (59), Expect = 4.4
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 82 LGENHFYGKQGFYFYTETKTVTQLWRESDVTHSKA 116
L +Y K G YT TV Q+ + + A
Sbjct: 58 LNSKDWYEKHGITLYTGE-TVIQIDTDQKQVITDA 91
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 26.2 bits (57), Expect = 6.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 79 GSFLGENHFYGKQG 92
GSF+G HF+G QG
Sbjct: 1201 GSFMGLTHFFGYQG 1214
>gnl|CDD|211359 cd08353, Glo_EDI_BRP_like_7, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping. The structures of this family demonstrate
domain swapping, which is shared by glyoxalase I and
antibiotic resistance proteins.
Length = 142
Score = 25.4 bits (56), Expect = 6.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 14 VCLTVDTLDEAISIINKNPYG 34
V TVD +D +S + K+
Sbjct: 91 VMFTVDDIDATLSRLAKHGAE 111
>gnl|CDD|234101 TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent
dehydrogenase, glucose/quinate/shikimate family. This
protein family has a phylogenetic distribution very
similar to that coenzyme PQQ biosynthesis enzymes, as
shown by partial phylogenetic profiling. Members of this
family have several predicted transmembrane helices in
the N-terminal region, and include the quinoprotein
glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli
and the quinate/shikimate dehydrogenase of Acinetobacter
sp. ADP1 (EC 1.1.99.25). Sequences closely related
except for the absense of the N-terminal hydrophobic
region, scoring in the gray zone between the trusted and
noise cutoffs, include PQQ-dependent glycerol (EC
1.1.99.22) and and other polyol (sugar alcohol)
dehydrogenases.
Length = 764
Score = 25.7 bits (57), Expect = 8.0
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 32 PYGNGTAIFTNNGATA--RKFSQEIDCGQVGINVPIPVPLSMFSFTGSRGSFLGENHFYG 89
P+G AI G D G +GI +P+P+P+ + + G + G
Sbjct: 639 PWGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGA 698
Query: 90 KQGFYFYT-ETKTVTQLWR 107
Q Y + T +LW+
Sbjct: 699 TQDNYLRAYDLSTGKELWK 717
>gnl|CDD|215296 PLN02540, PLN02540, methylenetetrahydrofolate reductase.
Length = 565
Score = 25.5 bits (56), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 55 DCGQVGINVPIPVPLSM 71
DC Q+GI PI VP M
Sbjct: 190 DCRQIGITCPI-VPGIM 205
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,216,482
Number of extensions: 524279
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 136
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)