RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10611
(124 letters)
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 232 bits (594), Expect = 7e-76
Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M YK EIFGPVL + +EA+S+ K+ YGNG AI+T +G AR F+ I+ G VG
Sbjct: 400 MDIYKTEIFGPVLSVVRARNYEEALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVG 459
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDVTHSKAAVSM 120
+NVPIPVPL+ SF G + S G+ + +G F+T TKT+T W A S+
Sbjct: 460 VNVPIPVPLAYHSFGGWKSSSFGDLNQHGTDSIKFWTRTKTITSRWPSG--IKDGAEFSI 517
Query: 121 PVMQ 124
P M+
Sbjct: 518 PTMR 521
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 223 bits (571), Expect = 9e-73
Identities = 47/111 (42%), Positives = 63/111 (56%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +K+EIF PVL + V L EAI I NK+ + NG +FT+N R F + ID G +G
Sbjct: 375 MTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLG 434
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDV 111
IN+ +P P++ F F+G + SF G H GK FYT K VT + D
Sbjct: 435 INLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 485
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 91.1 bits (227), Expect = 8e-23
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
MK +EEIFGPVLV + +EA+ N YG +FT + A + + E++ G V
Sbjct: 403 MKIAQEEIFGPVLVAIPFKDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVY 462
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N +P P F G +GS E Y FYT+ KT+
Sbjct: 463 LNSHNVRHLPTP-----FGGVKGSGDRREGGTY---ALDFYTDLKTIA 502
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 89.2 bits (222), Expect = 3e-22
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EEIFGP++ L D A + N + +G A+++ + A +F+ +ID G V
Sbjct: 382 MEIAREEIFGPLISVLKADDEAHAAELANASDFGLSAAVWSKDIDRAAQFALQIDSGMVH 441
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN F GS+ S LG F G +T + +
Sbjct: 442 INDLTVNDEPHVMFGGSKNSGLG--RFNGDWAIEEFTTDRWIG 482
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 87.2 bits (217), Expect = 2e-21
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ ++EEIFGPVL L +T DEA+++ N YG I + + + R+ + ++ G V
Sbjct: 397 MRIFREEIFGPVLSLLPFNTEDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVE 456
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N S F G + S E G G + +TK ++
Sbjct: 457 VNGHELPGGS--YFGGVKFSGRARE---GGLWGIKEFLDTKAIS 495
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 86.4 bits (215), Expect = 3e-21
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPV+ +T + LDEAI I N YG + + T K ++ I+ G V
Sbjct: 376 MTIAQEEIFGPVMSVITYNDLDEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVE 435
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN P F G + S LG E +G G + E K++
Sbjct: 436 INEAGRKPDL--PFGGYKQSGLGRE---WGDYGIEEFLEVKSIA 474
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 86.1 bits (214), Expect = 5e-21
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPV+ L D DE ++ N +G +FT + A A + ++ G +
Sbjct: 386 MTIAREEIFGPVMCVLDFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLW 445
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN P+ +P F GS+ S G EN Y+E KTV
Sbjct: 446 INTYNLCPVEIP-----FGGSKQSGFGREN---SAAALEHYSELKTVY 485
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 85.7 bits (213), Expect = 6e-21
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ EE FGPVL + V +EAIS+ N++ YG +IFT + A + ++ G V
Sbjct: 380 MRVAWEEPFGPVLPIIRVKDANEAISLSNQSDYGLQASIFTKDTDRAINIGKHLEVGTVH 439
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTV 102
IN F F G + S LG + K T +
Sbjct: 440 INAKTERGPDHFPFLGVKKSGLGVQG---IKPSLLSMTRERVT 479
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 85.7 bits (213), Expect = 7e-21
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPVL + DT ++AI+I N + YG +++T + K SQ+I G G
Sbjct: 381 MTIAQEEIFGPVLAIIPYDTEEDAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYG 440
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN P S F G + S +G E G +G +T+ K+V
Sbjct: 441 INWYAFDPGS--PFGGYKNSGIGRE---NGPEGVEHFTQQKSVL 479
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 85.7 bits (213), Expect = 7e-21
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+EEIFGPV+ + D A+ I N YG A+ T N A + +E G +
Sbjct: 411 AVIMQEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLY 470
Query: 61 INVPIP------VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
N P F G + S G + + KTV+
Sbjct: 471 FNRNCTGAIVGYHP-----FGGFKMSGTDSKA-GGPDYLALHMQAKTVS 513
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 85.3 bits (212), Expect = 7e-21
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M C KEEIFGPV+ L DT +E + N +G + +FT + + A + + ++ G
Sbjct: 394 MTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCY 453
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN P+ VP F G + S G EN G+ +Y++ KTV
Sbjct: 454 INTYSISPVEVP-----FGGYKMSGFGREN---GQATVDYYSQLKTVI 493
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 84.9 bits (211), Expect = 1e-20
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ EE FGPVL + V +++EAI I NK+ YG +IFTN+ A +++++ G V
Sbjct: 371 MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVH 430
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN F F G++ S G + K T K+V
Sbjct: 431 INNKTQRGTDNFPFLGAKKSGAGIQG---VKYSIEAMTTVKSVV 471
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 84.9 bits (211), Expect = 1e-20
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPVL LT T DEA+++ N +G ++++ N TA + + I G+
Sbjct: 396 MSIAREEIFGPVLSTLTFKTADEAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCW 455
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN +P G + S LG E G+ GF Y++ K V
Sbjct: 456 INSVIDGTPELP-----IGGYKKSGLGREL---GRYGFDEYSQFKGVH 495
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 84.9 bits (211), Expect = 1e-20
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +EEIFGPV+ L D DEAI N YG + T + A A + ++ G
Sbjct: 381 MTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICW 440
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN P +P G + S +G EN G YT K+V
Sbjct: 441 INTWGESPAEMP-----VGGYKQSGVGREN---GLTTLAHYTRIKSVQ 480
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 84.5 bits (210), Expect = 2e-20
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ ++EE+FGPVL T T +EAI + N YG G A+ +N+ + ++ G V
Sbjct: 387 MQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVW 446
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVTQ 104
+N P + G + S G E G+ G Y K VTQ
Sbjct: 447 VNCSQPCFTQA-PWGGVKRSGFGREL---GEWGLDNYLSVKQVTQ 487
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 84.5 bits (210), Expect = 2e-20
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ + E+FGPV+ D+A++ N + YG ++++T + + A + + + G
Sbjct: 395 DEIVRREVFGPVVSVTRFTGKDDAVAWANDSDYGLASSVWTKDISKAMRAASRLQYGCTW 454
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN + M G + S G + Y YT + +
Sbjct: 455 INTHFMLTNEM-PHGGIKQSGYGKDMSVY---ALEDYTAVRHIM 494
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 84.1 bits (209), Expect = 2e-20
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ KEEIFGPV + +LD+ I N YG IFTN+ A S + G V
Sbjct: 394 MRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVW 453
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N V P F G + S G E G+ GF+ YTE KTVT
Sbjct: 454 VNCYSVVSAQCP-----FGGFKMSGNGREL---GEYGFHEYTEVKTVT 493
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 84.1 bits (209), Expect = 2e-20
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
++E+FGPV+ D ++ ++ N + YG ++++T + A + S + G
Sbjct: 393 DAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTW 452
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N + M G + S G + Y G YT + V
Sbjct: 453 VNTHFMLVSEM-PHGGQKLSGYGKDMSLY---GLEDYTVVRHVM 492
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 84.2 bits (209), Expect = 2e-20
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ +EE+FGPV+ +T EAI + N + YG A+F+ + A++ + ++ G V
Sbjct: 408 MRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVW 467
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVTQ 104
IN P + G + S +G E GK+G Y +K +
Sbjct: 468 INDFHPYFAQA-PWGGYKQSGIGREL---GKEGLEEYLVSKHILT 508
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 84.1 bits (209), Expect = 2e-20
Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M KEEIFGPV+ L T++E + N + YG A+FT + A SQ + G V
Sbjct: 393 MTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVW 452
Query: 61 IN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N P F G + S G E G+ G YTE KTVT
Sbjct: 453 VNCYDVFGAQSP-----FGGYKMSGSGREL---GEYGLQAYTEVKTVT 492
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 82.6 bits (205), Expect = 6e-20
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ +EEIFGPVL + V EA+ + N PYG +++ +E G +
Sbjct: 411 ARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLY 470
Query: 61 INVPIP---VPLSMF-----SFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
N I V + F S T ++ G + E K V
Sbjct: 471 FNRKITGALVGVQPFGGFKLSGTNAK---TG-----ALDYLRLFLEMKAVA 513
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 81.5 bits (202), Expect = 2e-19
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M YK E+F PV + + V LD+AI + N PYG A+F + R+ + ++ G +
Sbjct: 389 MVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIY 448
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN + + F G + S + E T KT+
Sbjct: 449 INDMPRHGIGYYPFGGRKKSGVFREG---IGYAVEAVTAYKTIV 489
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 81.1 bits (201), Expect = 3e-19
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 1 MKCYKEEIFGPVLVCLT--VDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQ 58
M KEE FGP+++ +D +S N +G + +FT + A S ++ G
Sbjct: 413 MYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGT 472
Query: 59 VGIN----VPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
V IN + P F G + S G + G+ Y KTVT
Sbjct: 473 VFINTYNKTDVAAP-----FGGFKQSGFGKDL---GEAALNEYLRIKTVT 514
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 81.1 bits (201), Expect = 3e-19
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
K + E+F P+ + + EAI + N YG +A+FT++ KF+ +ID G
Sbjct: 375 SKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTH 434
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
+N +F G++ S +G F +T TK ++
Sbjct: 435 VNDQSVNDSPNIAFGGNKASGVG--RFGNPWVVEEFTVTKWIS 475
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 80.3 bits (199), Expect = 4e-19
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKF--SQEIDCGQ 58
E F P+L +E + N+ G ++IFT + ++ + DCG
Sbjct: 394 ASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGI 453
Query: 59 VGINVP-----IPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
V +N+P I F G + + G E+ G + Y T T
Sbjct: 454 VNVNIPTSGAEIGGA-----FGGEKHTGGGRES---GSDAWKQYMRRSTCT 496
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 78.7 bits (195), Expect = 2e-18
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M +++E+FGPV A+++ N + +G IFT + A + + ++CG V
Sbjct: 359 MTAFRQELFGPVAAITVAKDAAHALALANDSEFGLSATIFTADDTLAAEMAARLECGGVF 418
Query: 61 INVPIP----VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
IN V F G + S G G + + +TV
Sbjct: 419 INGYSASDARVA-----FGGVKKSGFGREL--SHFGLHEFCNVQTV 457
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 78.3 bits (194), Expect = 2e-18
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ +E+FGP+ V+ + AI + N + YG G+++ ++ A+K S +I+ G
Sbjct: 356 NPVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTV 415
Query: 61 INVPIP----VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
IN +P F G + S G G + V
Sbjct: 416 INGRWITSGELP-----FGGIKKSGYGREL--SGLGLMAFVNEHLV 454
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 76.0 bits (188), Expect = 2e-17
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
K E F PV+ + + +E I I N YG +AIFTN+ + KF++ ++ G V
Sbjct: 362 NILCKTETFAPVIPIIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGGVV 420
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN F G + S LG E K + KT+
Sbjct: 421 INDSSLFRQDNMPFGGVKKSGLGREG---VKYAMEEMSNIKTII 461
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 75.4 bits (186), Expect = 3e-17
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 19/120 (15%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLD--------EAISIINKNPYGNGTAIFTNNGATARKFSQ 52
+ E+FGPV A+++ + +I++N+ A + +
Sbjct: 397 TLLHDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLAL 456
Query: 53 EIDCGQVGINVPIP----------VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTV 102
E+ ++ P + M G + GE G + FY +
Sbjct: 457 ELADSHGRVHAISPSVQHSQTGHGNVMPMSLHGGPGRAGGGEEL-GGLRALAFYHRRSAI 515
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 74.1 bits (183), Expect = 7e-17
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 4/101 (3%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ EE FGP+L + AI N YG + +++ +F E G V
Sbjct: 374 AERPDEEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGIVN 433
Query: 61 INVPIPVPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETK 100
N + S F G S + +
Sbjct: 434 WNKQLTGAASSAPFGGIGASGNHRPS---AYYAADYCAYPV 471
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 72.2 bits (178), Expect = 3e-16
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M EE FGPVL + DTL++AIS+ N + YG ++I+T N A K + + G+
Sbjct: 377 MSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETY 436
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTV 102
IN G R S +G + GK G + Y +T+ V
Sbjct: 437 INRENFEAMQGF-----HAGWRKSGIGGAD---GKHGLHEYLQTQVV 475
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 67.7 bits (166), Expect = 1e-14
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ +EEIFGPVL + D+AI N + IF+ + K +E G +
Sbjct: 905 HRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLY 964
Query: 61 INVPI--PVPLSMFSFTGSRGSFLGENHFYGKQG----FYFYTETKTVT 103
IN + F G+R S +G K G + + + VT
Sbjct: 965 INRNNTGALVERQ-PFGGARMSGVG-----TKAGGPDYLLHFMDPRVVT 1007
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 66.0 bits (162), Expect = 5e-14
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
EE FGP+L + V ++++AI N + YG + T + A + +++ G+V
Sbjct: 386 NIVVHEETFGPILPIVKVSSMEQAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVY 445
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN + G + S G E+ GK G Y E KTV
Sbjct: 446 INRGMGEQHQGF-----HNGWKQSGFGGED---GKFGLEQYLEKKTVY 485
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 65.0 bits (159), Expect = 9e-14
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 20/122 (16%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNG--ATARKFSQEID--C 56
++EEIFGP + + + + + +S+ I + ++
Sbjct: 371 HPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIA 430
Query: 57 GQVGIN-VPIPVPLS-------MF-SFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWR 107
G++ N P V + + + T S + +G + + + Q
Sbjct: 431 GRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTSVGA------EAIHRWLRPVAY-QALP 483
Query: 108 ES 109
ES
Sbjct: 484 ES 485
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 64.5 bits (158), Expect = 2e-13
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M C EE FGP+ + DT +EAI+I N G ++ + A + +++++ G VG
Sbjct: 384 MLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVG 443
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
+N + P F G + S LG E K G Y E K V
Sbjct: 444 VNEGLISSVECP-----FGGVKQSGLGREG---SKYGIDEYLELKYVC 483
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 64.1 bits (157), Expect = 2e-13
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M KEE FGP+ DT +E I+ N +G +T N + A + S+ ++ G VG
Sbjct: 400 MLVAKEETFGPLAPLFAFDTEEEVIAQANDTIFGLAAYFYTENFSRAIRVSEALEYGMVG 459
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVTQLWR 107
N + P F G + S LG E K G Y ETK + ++
Sbjct: 460 HNTGLISNEVAP-----FGGVKQSGLGREG---SKYGIEEYLETKYICSAYK 503
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 64.1 bits (157), Expect = 2e-13
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
K KEE FGP+ + I+ N +G + + + + + ++ G VG
Sbjct: 379 AKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVG 438
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN I P F G + S LG E K G Y E K +
Sbjct: 439 INTGIISNEVAP-----FGGIKASGLGREG---SKYGIEDYLEIKYMC 478
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 63.7 bits (156), Expect = 3e-13
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 5 KEEIFGPVLVCLTVDTLDEAISIINKNP-----YGNGTAIFTNNGATARKFSQEIDCGQV 59
+EEIFGPVL + V +L+EAI IN+ Y +F++N +K E G V
Sbjct: 348 QEEIFGPVLPIVCVRSLEEAIQFINQREKPLALY-----MFSSNDKVIKKMIAETSSGGV 402
Query: 60 GIN 62
N
Sbjct: 403 AAN 405
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 63.9 bits (156), Expect = 3e-13
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGT----AIFTNNGATARKFSQEIDCGQV 59
Y E P+L T +T EA + Y G I + + R+F+ + ++
Sbjct: 338 YSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKKPVSRL 397
Query: 60 GINVP 64
+N P
Sbjct: 398 LVNTP 402
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 63.7 bits (156), Expect = 3e-13
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M KEE FGP+ + +E + + N +G +++ + + ++ ++ G VG
Sbjct: 382 MDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVG 441
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
IN + P F G + S LG E G Y K +
Sbjct: 442 INTGLISNEVAP-----FGGVKQSGLGREG---SHYGIDDYVVIKYLC 481
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 63.3 bits (155), Expect = 4e-13
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M CY+EE FGP++ T +E I N +G + +FT + A++ + + G VG
Sbjct: 382 MCCYQEETFGPLVPMALFRTEEEVIDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVG 441
Query: 61 INVPIP----VPLSMFSFTGSRGSFLG-ENHFYGKQGFYFYTETKTVT 103
N P F G + S +G E G +G + + E +TV
Sbjct: 442 WNTGTGPTPEAP-----FGGMKASGIGREG---GLEGLFEFVEAQTVP 481
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 62.1 bits (151), Expect = 1e-12
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 14/107 (13%)
Query: 5 KEEIFGPVLVCLTV--DTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGIN 62
EE+FGP+L + + L+ + I + YG + + + + G + +N
Sbjct: 884 TEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVN 943
Query: 63 VPI--PVPLSMFSFTGSRGSFLGENHFYGKQG----FYFYTETKTVT 103
+ V F G+ S G K G + +TVT
Sbjct: 944 RNMIGAVVGVQ-PFGGNGLSGTG-----PKAGGPHYLARFATEQTVT 984
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 54.3 bits (131), Expect = 6e-10
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 6 EEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNG--ATARKFSQ--EIDCGQVGI 61
EE+FGP+ + + V + E + I + G TAR+ E G+V +
Sbjct: 411 EEVFGPLGLVVRVGSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLV 470
Query: 62 NVP 64
N
Sbjct: 471 NGF 473
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 50.8 bits (122), Expect = 1e-08
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 6 EEIFGPVLVCLTVDTLDEAI----SIINKNPYGNGTAIFTN---NGATARKFSQEIDCGQ 58
E P L D ++A+ +++ G+ + ++TN N R F ++ +
Sbjct: 335 HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMKTAR 394
Query: 59 VGINVP 64
+ IN+P
Sbjct: 395 ILINIP 400
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 48.3 bits (116), Expect = 7e-08
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNG--TAIFTNNGATARKFSQEIDCGQVGI 61
+ E ++ V +DEAI I K Y G +I T N + A+KF EID V +
Sbjct: 319 WPTEYLDLIIAIKVVKNVDEAIEHIKK--YSTGHSESILTENYSNAKKFVSEIDAAAVYV 376
Query: 62 N 62
N
Sbjct: 377 N 377
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 48.0 bits (115), Expect = 9e-08
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNG-T-AIFTNNGATARKFSQEIDCGQVGI 61
+ E L VD + +AI I+K YG+ T I T + TA F Q +D V
Sbjct: 332 LRTEYGDLELCIEVVDNVQDAIDHIHK--YGSSHTDVIVTEDENTAEFFLQHVDSACVFW 389
Query: 62 N 62
N
Sbjct: 390 N 390
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 47.2 bits (113), Expect = 2e-07
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNG-T-AIFTNNGATARKFSQEIDCGQVGI 61
+ +E L V + + AI IN + + T AI T N A A KF + +D V
Sbjct: 337 FDKEFLSLDLAAKFVTSTESAIQHINT--HSSRHTDAIVTENKANAEKFMKGVDSSGVYW 394
Query: 62 N 62
N
Sbjct: 395 N 395
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 47.0 bits (112), Expect = 2e-07
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKN-PYGNGTAIFTNNGATARKFSQEIDCGQV 59
EE+FGP+L L D++ AI +NK+ P +F + A+ +I G
Sbjct: 352 DPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQIQSGDA 411
Query: 60 GIN 62
+N
Sbjct: 412 QVN 414
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 39.6 bits (93), Expect = 9e-05
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 5 KEEIFGPVLVCLTV--DTLDEAISIINK-NPYGNGTAIFTNNGATARKFSQEI 54
KEEIFGPVL D E + +++ YG A+F + A ++ ++ +
Sbjct: 445 KEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 497
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 1.9
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 43 NGATARKFSQEIDCGQVGINVPIPVPLSMFSFTGS--RGSFL 82
+ + R + + G + + VP + F F S + F
Sbjct: 2 DAYSTRPLT--LSHGS--LEHVLLVPTASF-FIASQLQEQFN 38
>3ddc_B RAS association domain-containing family protein; oncogene,
tumorsuppressor, ubiquitin fold, RAS effector, RAP
rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A
{Mus musculus}
Length = 163
Score = 26.2 bits (57), Expect = 2.6
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 58 QVGINVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDVT 112
+ + P+ VP + + + FY + Q+ S T
Sbjct: 44 HLKLRRPVTVPAGIRPQSIYDAIKEVNPAATTDKRTSFYLPLDAIKQMHISSTTT 98
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 26.0 bits (58), Expect = 4.1
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 18 VDTLDEAISII----NKNPYGNGTAIFTNNGATA 47
+T+DE +S+ P GN AI TN G
Sbjct: 273 ANTIDEMLSMARAFSQPLPRGNKVAIMTNAGGPG 306
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 25.9 bits (57), Expect = 4.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 74 FTGSRGSFLGENHFYGKQGFY 94
FT G LG++H GK G+
Sbjct: 350 FTSDHGEQLGDHHLLGKIGYN 370
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A
{Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A*
1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Length = 306
Score = 25.5 bits (56), Expect = 5.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 21 LDEAISIINKNPYGNGTAIFTNNGATA 47
D A S++ ++P I N +T
Sbjct: 183 FDAANSMLVQHPEVKHWLIVGMNDSTV 209
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET:
LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A*
1htp_A*
Length = 131
Score = 24.9 bits (55), Expect = 5.6
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 19 DTLDEAISIINKNPYGNG 36
L +IN +PY +G
Sbjct: 81 TGLTGKPGLINSSPYEDG 98
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta
sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus}
PDB: 2edg_A
Length = 125
Score = 24.9 bits (55), Expect = 5.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 19 DTLDEAISIINKNPYGNG 36
L E ++NK+ Y +G
Sbjct: 77 KALAENPGLVNKSCYEDG 94
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 25.2 bits (56), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 33 YGNGTAIFTNNGATARK 49
YG+G AIFTN+ A
Sbjct: 190 YGDGGAIFTNDDELATA 206
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A
{Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 25.1 bits (55), Expect = 7.3
Identities = 2/12 (16%), Positives = 7/12 (58%)
Query: 22 DEAISIINKNPY 33
+A+ + K+ +
Sbjct: 33 ADALDRLEKDLF 44
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Length = 136
Score = 24.5 bits (54), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 19 DTLDEAISIINKNPYGNG 36
+ LD +INK+P G G
Sbjct: 90 EKLDTEPELINKDPEGEG 107
>3mxu_A Glycine cleavage system H protein; seattle structural genomics
center for infectious disease, S CAT-scratch disease,
bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Length = 143
Score = 24.6 bits (54), Expect = 7.7
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 19 DTLDEAISIINKNPYGNG 36
L E+ ++N+ G
Sbjct: 99 AALAESPELVNQKAETEG 116
>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide,
hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo
sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A*
2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A*
3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A*
2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ...
Length = 497
Score = 25.0 bits (53), Expect = 8.5
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 10 GPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINVPIPVPL 69
G V L ++ ++ +P G+ + N + + I VG I
Sbjct: 430 GSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLT--IKDPAVGFLETISPGY 487
Query: 70 SMFSFT 75
S+ ++
Sbjct: 488 SIHTYL 493
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET:
TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Length = 373
Score = 24.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 33 YGNGTAIFTNNGATARK 49
G+G A+ TN+ A K
Sbjct: 191 LGDGGAVVTNDKDLAEK 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,883,290
Number of extensions: 98846
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 73
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)