RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10611
(124 letters)
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 118 bits (297), Expect = 3e-33
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M KEEIFGPV+ L T++E + N + YG A+FT + A SQ + G V
Sbjct: 387 MTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVW 446
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESD 110
+N V + F G + S G G+ G YTE KTVT + +
Sbjct: 447 VNC-YDVFGAQSPFGGYKMS--GSGRELGEYGLQAYTEVKTVTVKVPQKN 493
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 115 bits (288), Expect = 6e-32
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ KEEIFGPV + +LD+ I N YG IFTN+ A S + G V
Sbjct: 387 MRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVW 446
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESD 110
+N V + F G + S G G+ GF+ YTE KTVT + +
Sbjct: 447 VNC-YSVVSAQCPFGGFKMS--GNGRELGEYGFHEYTEVKTVTIKISQKN 493
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 113 bits (283), Expect = 3e-31
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M C KEEIFGPV+ L DT +E + N +G + +FT + + A + + ++ G
Sbjct: 394 MTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCY 453
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESD 110
IN P+ + F G + S G G+ +Y++ KTV + D
Sbjct: 454 INTYSISPVEV-PFGGYKMSGFG--RENGQATVDYYSQLKTVIVEMGDVD 500
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 111 bits (279), Expect = 1e-30
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ +EEIFGPVL + V EA+ + N PYG +++ +E G +
Sbjct: 411 ARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLY 470
Query: 61 INVPIP-VPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLW 106
N I + + F G + S + E K V + +
Sbjct: 471 FNRKITGALVGVQPFGGFKLSGTNAKT-GALDYLRLFLEMKAVAERF 516
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 110 bits (274), Expect = 5e-30
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M YK E+F PV + V LD+AI + N PYG A+F + R+ + ++ G +
Sbjct: 387 MVLYKREVFAPVASAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIY 446
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWR 107
IN + + F G + S + T KT+ ++
Sbjct: 447 INDMPRHGIGYYPFGGRKKSGVFREG--IGYAVEAVTAYKTIVFNYK 491
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 107 bits (267), Expect = 4e-29
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
M+ EE FGPVL + V +++EAI I NK+ YG +IFTN+ A +++++ G V
Sbjct: 370 MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVH 429
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
IN F F G++ S G K T K+V
Sbjct: 430 INNKTQRGTDNFPFLGAKKSGAGIQG--VKYSIEAMTTVKSVV 470
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 104 bits (260), Expect = 4e-28
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
++E+FGPV+ D ++ ++ N + YG ++++T + A + S + G
Sbjct: 372 DAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTW 431
Query: 61 INVPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVT 103
+N + M G + S G++ G YT + V
Sbjct: 432 VNTHFMLVSEM-PHGGQKLSGYGKDM--SLYGLEDYTVVRHVM 471
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 101 bits (253), Expect = 3e-27
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+EEIFGPV+ + V +L+EAI IN+ +F+NN +K E G V
Sbjct: 326 SPVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVIKKMIAETSSGGVT 385
Query: 61 IN-VPIPVPLSMFSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRESDVTHS 114
N V + + + F G S +G ++GK+ F ++ ++ ++ H
Sbjct: 386 ANDVIVHITVPTLPFGGVGNSGMG--AYHGKKSFETFSHRRSCLVKSLLNEEAHK 438
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 92.0 bits (227), Expect = 8e-24
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVG 60
+ E ++ V +DEAI I K G+ +I T N + A+KF EID V
Sbjct: 303 EDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVY 362
Query: 61 INVPIPVPLSM-FSFTGSRGSFLGENHFYGKQGFYFYTETKTVTQ 104
+N F F G H G G T K V
Sbjct: 363 VNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVL 407
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 66.3 bits (160), Expect = 2e-14
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 14/119 (11%)
Query: 1 MKCYKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNG--ATARKFSQ--EIDC 56
++EEIFGP + + + + + +S+ I + E
Sbjct: 367 HPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIA 426
Query: 57 GQVGIN---VPIPVPLSMFS---FTGSRGSFLGENHFYGKQGFYFYTETKTVTQLWRES 109
G++ N + V +M + S S G + + + Q ES
Sbjct: 427 GRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTS---VGAEAIHRWLRPVAY-QALPES 481
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 61.4 bits (148), Expect = 8e-13
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 4 YKEEIFGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINV 63
+ +E L V + + AI IN + + AI T N A A KF + +D V N
Sbjct: 326 FDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNA 385
Query: 64 P 64
Sbjct: 386 S 386
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 26.3 bits (57), Expect = 1.2
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 9 FGPVLVCLTVDTLDEAISIINKNPYGNGTAIFTNNGATARKFSQEIDCGQVGINV 63
F P ++ + I+ P + A +F + C + V
Sbjct: 51 FAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVR--TCDAFNVPV 103
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.3 bits (54), Expect = 2.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 11 PVLVCLTVDTLDEAISIINK-NPYGN----GTAIFTNNG 44
PV+V L D+A++ ++K +P G +FT G
Sbjct: 5 PVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFG 43
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 106
Score = 24.4 bits (53), Expect = 2.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 17 TVDTLDEAISIINKNPY 33
++ LDE ISI+ NP
Sbjct: 57 DLEDLDETISIVEANPR 73
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
[TaxId: 2336]}
Length = 161
Score = 24.1 bits (52), Expect = 5.2
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 8 IFGPVLVCLTVDTLDEAISIINKNPYG 34
+FG +V +TLD+AI + K
Sbjct: 116 LFGNSVVV---ETLDDAIRMKKKYRLN 139
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 131
Score = 23.7 bits (51), Expect = 6.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 19 DTLDEAISIINKNPYGNG 36
L +IN +PY +G
Sbjct: 81 TGLTGKPGLINSSPYEDG 98
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system
{Thermus thermophilus [TaxId: 274]}
Length = 127
Score = 23.3 bits (50), Expect = 7.7
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 19 DTLDEAISIINKNPYGNG 36
L++ ++N++PYG G
Sbjct: 80 LALEKTPELVNQDPYGEG 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 464,262
Number of extensions: 19358
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 20
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)