BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10612
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 269/419 (64%), Gaps = 31/419 (7%)
Query: 31 IGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQ 89
+ + Q+LF LSPGS FF GA I+N L+EF++ + + K GF EVV+P +Y LW+
Sbjct: 40 VSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE 99
Query: 90 TSGHWAHYSENMF---SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLH 146
SGHW +Y+++MF + D E E Y LKPMNCPGHCLIF + RS+ ELPLR +DF LH
Sbjct: 100 KSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLH 159
Query: 147 RNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYS-IFGFT------- 198
RNE SGAL+GLTR+R+F QDD HIFCT Q+ EI +L + VY+ IF F
Sbjct: 160 RNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAE 219
Query: 199 --FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 256
+ + STRP+ ++G+L+VWN AE+ L+ L G+PW NPGDGAFYGPK+DI +TD
Sbjct: 220 SNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDH 279
Query: 257 LKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKW 316
L++ HQ ATIQLDFQLP RF+L + ++ RP+MIHRA GS+ER +A+L +S G+W
Sbjct: 280 LRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGRW 339
Query: 317 PFWISPRQGIVIPVAEPFNEYAD-------QVKNKIFAA--------GFMCDADLD-SSD 360
PFW++P Q ++IPV + D +++N++ A + + DLD ++
Sbjct: 340 PFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNE 399
Query: 361 TLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE-FSVDDVITRFGKLKEN 418
+ +I++A + Y+++++VG++E N+R RDN E ++ + +F +L++N
Sbjct: 400 PVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEKN 458
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 357 bits (917), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 177/399 (44%), Positives = 256/399 (64%), Gaps = 2/399 (0%)
Query: 28 NRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 87
+RKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + + L
Sbjct: 244 HRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVL 303
Query: 88 WQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHR 147
W+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG HR
Sbjct: 304 WEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHR 363
Query: 148 NELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRLSTR 206
NE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LSTR
Sbjct: 364 NEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTR 423
Query: 207 PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATI 266
PEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC T+
Sbjct: 424 PEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTV 483
Query: 267 QLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGI 326
QLDF LP R + +YV E E+ PVMIHRAILGS+ER + ILTE +AG +P W++P Q +
Sbjct: 484 QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVV 543
Query: 327 VIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKS 386
++ + + +EY +++ K+ AG ADL ++ + KIR + + +++V G+KE
Sbjct: 544 IMNITDSQSEYVNELTQKLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVE 602
Query: 387 SNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLKSEE 425
S V VRTR G V++VI + + +R+LK E
Sbjct: 603 SGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE 641
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 177/399 (44%), Positives = 256/399 (64%), Gaps = 2/399 (0%)
Query: 28 NRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 87
+RKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + + L
Sbjct: 3 HRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVL 62
Query: 88 WQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHR 147
W+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG HR
Sbjct: 63 WEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHR 122
Query: 148 NELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRLSTR 206
NE SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LSTR
Sbjct: 123 NEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTR 182
Query: 207 PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATI 266
PEK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC T+
Sbjct: 183 PEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTV 242
Query: 267 QLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGI 326
QLDF LP R + +YV E E+ PVMIHRAILGS+ER + ILTE +AG +P W++P Q +
Sbjct: 243 QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVV 302
Query: 327 VIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKS 386
++ + + +EY +++ K+ AG ADL ++ + KIR + + +++V G+KE
Sbjct: 303 IMNITDSQSEYVNELTQKLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVE 361
Query: 387 SNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLKSEE 425
S V VRTR G V++VI + + +R+LK E
Sbjct: 362 SGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE 400
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 232/376 (61%), Gaps = 12/376 (3%)
Query: 28 NRKIGREQELFFFHEL-SPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 86
+RKIG+E ELF +L G + GA I + +I + G+ V +P + NV
Sbjct: 243 HRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVD 302
Query: 87 LWQTSGHWAHYSENMF---SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFG 143
L++TSGHW HY E+MF D E E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G
Sbjct: 303 LYKTSGHWDHYQEDMFPPMQLD-ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELG 361
Query: 144 VLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLR 202
+HR E SGA++GL RVR +D+HIF +QI +E ++ + +VY FGF ++ R
Sbjct: 362 TMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR 421
Query: 203 LSTR----PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALK 258
LS R EKY + ++WNKAE L+ + + G + E G+ AFYGPK+D+ + A+
Sbjct: 422 LSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMG 481
Query: 259 RPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPF 318
+ +T QLDF LP RF+L Y+ + GE +RPV+IHR ++ ++ER VA LTE G +P
Sbjct: 482 KEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPT 541
Query: 319 WISPRQGIVIPVAEPFN-EYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFI 377
W++P+Q +IPV + +YA Q+++++ + G D D ++ + KIR AQ+ + +
Sbjct: 542 WLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSID-DRNEKMGYKIREAQMQKIPYQ 600
Query: 378 MVVGEKEKSSNTVNVR 393
+VVG+KE +N VNVR
Sbjct: 601 IVVGDKEVENNQVNVR 616
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix
Length = 471
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 185/380 (48%), Gaps = 29/380 (7%)
Query: 46 GSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 105
G F G I L E + + +RG+ V +P + + +L++ SGH Y NM+ FD
Sbjct: 40 GVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD 99
Query: 106 VENETYALKPMNCPGHCLIFDHRV---RSWRELPLRMADFGVLHRNELSGALTGLTRVRR 162
+E +A+KPMNCP H L+F + V RS LP ++ +FG +HR E SG++ GL RVR
Sbjct: 100 IEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRG 159
Query: 163 FQQDDAHIFCTVEQIGDEIVGALDFLRNV------YSIFGFTFNLRLSTRP-----EKYL 211
F QDDAHI ++ D + + ++ V + TF +RLS ++++
Sbjct: 160 FTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFM 219
Query: 212 GELEVWNKAEKQLEASLNSFGEPW----TENPGDGAFYGPKIDITIT---DALKRPHQCA 264
G E W AE+ L + + E + E G+ AFYGPK+D + + + Q
Sbjct: 220 GSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMG 279
Query: 265 TIQLDFQLPIRFNL-AYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPR 323
TIQ DF LP RF L V E+ +IHRA+LGS+ER + + E G+ PF ++P
Sbjct: 280 TIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRRGRMPFTLAPI 339
Query: 324 QGIVIPVA------EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFI 377
Q VI V + A + + GF S L+ +R+ + + +
Sbjct: 340 QFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAV 399
Query: 378 MV-VGEKEKSSNTVNVRTRD 396
V +G KE ++VR D
Sbjct: 400 NVFIGAKEVREKVLDVRVFD 419
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix (Selenomethionine
Derivative)
Length = 471
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 180/380 (47%), Gaps = 29/380 (7%)
Query: 46 GSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 105
G F G I L E + + +RG+ V +P + + +L++ SGH Y N + FD
Sbjct: 40 GVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNXYLFD 99
Query: 106 VENETYALKPMNCPGHCLIFDHRV---RSWRELPLRMADFGVLHRNELSGALTGLTRVRR 162
+E +A+KP NCP H L+F + V RS LP ++ +FG +HR E SG++ GL RVR
Sbjct: 100 IEGHEFAVKPXNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRG 159
Query: 163 FQQDDAHIFCTVEQIGDEIVGALDFLRNV------YSIFGFTFNLRLSTRP-----EKYL 211
F QDDAHI ++ D + + + V + TF +RLS +++
Sbjct: 160 FTQDDAHIIVPGGRVIDVVYDVFEEXKLVLERLFKLGVSSETFKVRLSXSDKSLIGKEFX 219
Query: 212 GELEVWNKAEKQLEASLNSFGEPW----TENPGDGAFYGPKIDITIT---DALKRPHQCA 264
G E W AE+ L + + E + E G+ AFYGPK+D + + Q
Sbjct: 220 GSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIXXVEESGVSKEWQXG 279
Query: 265 TIQLDFQLPIRFNL-AYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPR 323
TIQ DF LP RF L V E+ +IHRA+LGS+ER + + E G+ PF ++P
Sbjct: 280 TIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRRGRXPFTLAPI 339
Query: 324 QGIVIPVA------EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFI 377
Q VI V + A + + GF S L+ +R+ + + +
Sbjct: 340 QFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAV 399
Query: 378 MV-VGEKEKSSNTVNVRTRD 396
V +G KE ++VR D
Sbjct: 400 NVFIGAKEVREKVLDVRVFD 419
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 87/396 (21%), Positives = 145/396 (36%), Gaps = 56/396 (14%)
Query: 23 SFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNV 82
+F W I EL G F+ G F+ N ++ EY K G +++ P V
Sbjct: 23 TFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTV 82
Query: 83 YNVK-LWQTSGHWAHYSENMF-----SFDVENETYALKPMNCPGHCLIFDHRVRSWRELP 136
L + S H + F E AL+P + +F VRS+++LP
Sbjct: 83 IPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLP 142
Query: 137 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 196
L++ + R+E L RVR ++AH C D + D+ + + +IF
Sbjct: 143 LKIHQTCTIFRHETKNT-KPLIRVREIHWNEAH--CCHATAEDAVSQLSDYWKVIDTIFS 199
Query: 197 FTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 256
E+ K +K + F GA Y D+ +
Sbjct: 200 D-----------------ELCFKGQKLRRVCWDRF---------PGADYSEVSDVVM--P 231
Query: 257 LKRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSV-ERMVAILTESYAG 314
R Q A I L + F++ Y N+ E P + I V ++I +S
Sbjct: 232 CGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGISTRVLACALSIHGDSGGL 291
Query: 315 KWPFWISPRQGIVIPVA--------------EPFNEYADQVKNKIFAAGFMCDADLDSSD 360
P I+P ++IP+ NE AD +K+K+ G D D S
Sbjct: 292 VLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKL---GLRVSIDDDFSK 348
Query: 361 TLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRD 396
++ K+ ++ + VG+++ ++ V RD
Sbjct: 349 SMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRD 384
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 39 FFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS 98
+ +++ G + + L +R E+ K E++ P + +LW+ SG + Y
Sbjct: 31 YIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYG 90
Query: 99 ENMFSF-DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 157
N++ D + Y L P + + + S++ LPL + +R+E + +GL
Sbjct: 91 PNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDE-KRSRSGL 149
Query: 158 TRVRRFQQDDAHIF 171
R R F D + F
Sbjct: 150 LRGREFIMKDGYSF 163
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 12/195 (6%)
Query: 27 WNRKIGREQELFFFHELSPGSCFFQTKGAF-IYNTLVEFIRSEYRKRGFQEVVSPN-VYN 84
W ++ + E+ +H++S C+ A+ I+ + +F +E +K G + P V
Sbjct: 34 WYSQVITKSEMIEYHDIS--GCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQ 91
Query: 85 VKLWQTSGHWAHYSENMFSFDVENET-----YALKPMNCPGHCLIFDHRVRSWRELPLRM 139
L + H A ++ + +T A++P + + V+S R+LP+++
Sbjct: 92 SALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKL 151
Query: 140 ADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTVEQIGDEIVGALDFLRNVY-SIFGF 197
+ + R E L R R F + H F T+E+ +E++ LD VY +
Sbjct: 152 NQWCNVVRWEFKHPQPFL-RTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAI 210
Query: 198 TFNLRLSTRPEKYLG 212
T EK+ G
Sbjct: 211 PVVKGRKTEKEKFAG 225
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 13/162 (8%)
Query: 49 FFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-FDVE 107
F + G F+ L+ + S +G+ + +P + N ++ + + + E ++ D E
Sbjct: 179 FLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGE 238
Query: 108 NETYALKPMNCPGHCLIFDHRVRSW-----RELPLRMADFGVLHRNELSGALT---GLTR 159
+E Y + P I + W +LP+R A + R E G+ R
Sbjct: 239 DEKYLIATSEQP----ISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFR 294
Query: 160 VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL 201
V F++ + + E+ +E + Y G + +
Sbjct: 295 VHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRV 336
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 46 GSCFFQTKG--AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103
GS + KG A L+ F +RGF + P+ K + +GH+ Y + +++
Sbjct: 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWA 323
Query: 104 FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRV 160
E + Y + L + + LPLR A + R+E + GL RV
Sbjct: 324 I-AETDLYLTGTAEVVLNAL-HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV 381
Query: 161 RRFQQDDAHIFC 172
+F + + ++
Sbjct: 382 HQFHKVEQYVLT 393
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SRY|B Chain B, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SER|A Chain A, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SER|B Chain B, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SES|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SES|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
Length = 421
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 46 GSCFFQTKG--AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103
GS + KG A L+ F +RGF + P+ K + +GH+ Y + +++
Sbjct: 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWA 214
Query: 104 FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRV 160
E + Y + L + + LPLR A + R+E + GL RV
Sbjct: 215 I-AETDLYLTGTAEVVLNAL-HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV 272
Query: 161 RRFQQDDAHIFC 172
+F + + ++
Sbjct: 273 HQFHKVEQYVLT 284
>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase
pdb|3ET5|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Tungstate
Length = 255
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 316 WPFWISPRQGIVIPVAEPFNEYADQVKNKIF 346
W W+ RQ +P A FN Y + K K+F
Sbjct: 92 WTRWVDARQSRAVPGAVEFNNYVNSHKGKVF 122
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
Length = 485
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 13/162 (8%)
Query: 49 FFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS-FDVE 107
F + G F+ L+ + +G+ + +P + N ++ + + + E ++ D E
Sbjct: 179 FLRNYGVFLNQALINYGLLFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGE 238
Query: 108 NETYALKPMNCPGHCLIFDHRVRSW-----RELPLRMADFGVLHRNELSGALT---GLTR 159
+E Y + P I + W +LP+R A + R E G+ R
Sbjct: 239 DEKYLIATSEQP----ISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFR 294
Query: 160 VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL 201
V F++ + + E+ +E + Y G + +
Sbjct: 295 VHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRV 336
>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D64n Complexed With 5'amp
Length = 262
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 316 WPFWISPRQGIVIPVAEPFNEYADQVKNKIF 346
W W+ RQ +P A FN Y + K+F
Sbjct: 91 WTRWVDARQSRAVPGAVEFNNYVNSHNGKVF 121
>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With Nmn
pdb|3OCV|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 5'-Amp
pdb|3OCW|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 3'-Amp
pdb|3OCX|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 2'-Amp
Length = 262
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 316 WPFWISPRQGIVIPVAEPFNEYADQVKNKIF 346
W W+ RQ +P A FN Y + K+F
Sbjct: 91 WTRWVDARQSRAVPGAVEFNNYVNSHNGKVF 121
>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Inorganic Phosphate
pdb|3OCZ|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With The Inhibitor Adenosine
5-O-Thiomonophosphate
Length = 262
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 316 WPFWISPRQGIVIPVAEPFNEYADQVKNKIF 346
W W+ RQ +P A FN Y + K+F
Sbjct: 91 WTRWVDARQSRAVPGAVEFNNYVNSHNGKVF 121
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 306 AILTESYAGKWPFWISPRQGIVIPV-------AEPFNEYADQVKNKIFAAGFMCDADLDS 358
A++T +++ W FW+ P G + V A ++ D+V K++ +G + + DLD+
Sbjct: 200 AVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSDLTDRV--KVWTSGQVEEYDLDA 257
Query: 359 SDTLNKKI 366
D +N ++
Sbjct: 258 DD-INSRV 264
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 24/131 (18%)
Query: 251 ITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTE 310
+TI A + I ++ +R++ + +GEK +PV +H +L ++
Sbjct: 181 VTIAHAGMDQRKAHVIAIEVAQKLRYHP--IVHEGEKLKPVAVHHHLLLGLQE------- 231
Query: 311 SYAGKWPFWISPRQGIVIPVAEPFNEYADQV---KNKIFAAGFMCDADLDSSDTLNKKIR 367
KWP I E F E Q+ K+K ++A F+ D+ + L K
Sbjct: 232 --PPKWP----------IESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFC 279
Query: 368 NAQISQYNFIM 378
A+ +YN ++
Sbjct: 280 PAREVRYNPVL 290
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 98 SENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGL 157
S N+ FD+ + LKP+ C G+ L+F V + + + + + + AL +
Sbjct: 1 SMNIHGFDLGSRYMDLKPLGCGGNGLVFS-AVDNDCDKRVAIKKIVLTDPQSVKHALREI 59
Query: 158 TRVRRFQQDD-AHIFCTVEQIGDEI---VGALDFLRNVYSI 194
+RR D+ +F + G ++ VG+L L +VY +
Sbjct: 60 KIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,025,283
Number of Sequences: 62578
Number of extensions: 552876
Number of successful extensions: 1126
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 22
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)