Query psy10612
Match_columns 426
No_of_seqs 206 out of 1480
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:49:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14799 thrS threonyl-tRNA sy 100.0 2.2E-73 4.9E-78 587.2 38.8 395 25-420 137-535 (545)
2 PRK12444 threonyl-tRNA synthet 100.0 8.2E-72 1.8E-76 594.4 41.1 393 25-419 244-638 (639)
3 PLN02908 threonyl-tRNA synthet 100.0 6.2E-71 1.4E-75 588.8 39.8 394 25-419 291-685 (686)
4 PRK12305 thrS threonyl-tRNA sy 100.0 1E-70 2.2E-75 580.8 39.6 396 25-421 175-574 (575)
5 PLN02837 threonine-tRNA ligase 100.0 1.7E-69 3.8E-74 570.6 39.4 394 25-420 216-612 (614)
6 PRK00413 thrS threonyl-tRNA sy 100.0 2.8E-68 6E-73 569.2 40.1 396 26-422 241-638 (638)
7 TIGR00418 thrS threonyl-tRNA s 100.0 2.4E-68 5.1E-73 561.8 38.8 389 25-414 169-561 (563)
8 PRK03991 threonyl-tRNA synthet 100.0 3E-66 6.4E-71 541.6 38.4 390 25-422 196-598 (613)
9 COG0441 ThrS Threonyl-tRNA syn 100.0 7.5E-66 1.6E-70 528.4 34.0 397 24-422 188-586 (589)
10 KOG1637|consensus 100.0 5.9E-66 1.3E-70 497.3 25.4 393 25-418 162-557 (560)
11 PRK12325 prolyl-tRNA synthetas 100.0 7.2E-62 1.6E-66 495.3 37.5 375 25-413 20-438 (439)
12 PRK09194 prolyl-tRNA synthetas 100.0 3.6E-59 7.7E-64 489.8 40.6 381 25-413 20-561 (565)
13 TIGR00408 proS_fam_I prolyl-tR 100.0 1.4E-59 2.9E-64 481.4 31.6 362 21-421 5-386 (472)
14 TIGR00409 proS_fam_II prolyl-t 100.0 1.1E-58 2.3E-63 482.7 38.7 381 25-414 20-567 (568)
15 PRK08661 prolyl-tRNA synthetas 100.0 3.7E-59 8.1E-64 479.2 34.3 363 20-420 10-391 (477)
16 COG0124 HisS Histidyl-tRNA syn 100.0 1E-59 2.3E-64 469.0 27.4 359 42-416 5-428 (429)
17 cd00771 ThrRS_core Threonyl-tR 100.0 8.6E-58 1.9E-62 443.9 29.4 296 27-322 1-298 (298)
18 PRK04173 glycyl-tRNA synthetas 100.0 1.2E-51 2.5E-56 420.4 32.7 354 27-415 6-455 (456)
19 KOG2324|consensus 100.0 7.8E-51 1.7E-55 381.6 27.6 372 27-413 26-427 (457)
20 CHL00201 syh histidine-tRNA sy 100.0 7.4E-50 1.6E-54 406.7 32.3 359 42-418 5-420 (430)
21 COG0442 ProS Prolyl-tRNA synth 100.0 2.7E-50 5.8E-55 406.6 26.3 386 18-412 12-498 (500)
22 PLN02530 histidine-tRNA ligase 100.0 7.2E-49 1.6E-53 404.8 23.5 354 42-408 71-486 (487)
23 PLN02972 Histidyl-tRNA synthet 100.0 3.7E-45 8E-50 383.2 25.6 360 42-417 328-761 (763)
24 PRK00037 hisS histidyl-tRNA sy 100.0 1.3E-44 2.7E-49 368.2 27.6 350 42-416 5-411 (412)
25 PRK12420 histidyl-tRNA synthet 100.0 1.2E-43 2.5E-48 361.4 23.1 350 42-408 5-422 (423)
26 TIGR00442 hisS histidyl-tRNA s 100.0 1.1E-41 2.4E-46 344.8 24.5 339 43-398 2-397 (397)
27 TIGR00389 glyS_dimeric glycyl- 100.0 3.5E-41 7.6E-46 344.6 28.2 371 27-415 5-550 (551)
28 KOG1936|consensus 100.0 5.8E-42 1.3E-46 328.7 19.4 359 42-418 61-517 (518)
29 PRK14894 glycyl-tRNA synthetas 100.0 2.3E-40 5E-45 329.1 29.1 373 21-417 2-538 (539)
30 cd00778 ProRS_core_arch_euk Pr 100.0 9.1E-40 2E-44 311.7 20.6 251 23-310 1-260 (261)
31 COG0423 GRS1 Glycyl-tRNA synth 100.0 2.7E-39 5.9E-44 319.8 24.5 385 27-419 8-554 (558)
32 cd00779 ProRS_core_prok Prolyl 100.0 1.3E-39 2.8E-44 309.6 19.5 248 27-311 5-255 (255)
33 PLN02734 glycyl-tRNA synthetas 100.0 1E-38 2.2E-43 330.7 24.6 374 25-420 75-665 (684)
34 cd00772 ProRS_core Prolyl-tRNA 100.0 2.3E-38 5E-43 302.1 24.4 253 23-311 1-264 (264)
35 cd00770 SerRS_core Seryl-tRNA 100.0 4.5E-38 9.7E-43 305.2 21.3 264 25-323 18-296 (297)
36 PRK05431 seryl-tRNA synthetase 100.0 2.9E-37 6.3E-42 312.2 21.1 282 8-324 109-416 (425)
37 TIGR00414 serS seryl-tRNA synt 100.0 6.4E-37 1.4E-41 309.1 22.6 281 8-323 112-417 (418)
38 PRK12292 hisZ ATP phosphoribos 100.0 1.9E-35 4.2E-40 297.8 20.3 313 42-374 4-378 (391)
39 KOG4163|consensus 100.0 2.1E-35 4.4E-40 283.1 14.0 362 21-421 65-453 (551)
40 PLN02678 seryl-tRNA synthetase 100.0 7.1E-34 1.5E-38 286.0 20.7 284 8-324 114-424 (448)
41 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 3.9E-33 8.5E-38 262.6 20.4 229 54-309 1-235 (235)
42 PRK12421 ATP phosphoribosyltra 100.0 4.8E-33 1E-37 279.7 18.6 309 42-381 8-382 (392)
43 PRK00960 seryl-tRNA synthetase 100.0 9.4E-33 2E-37 280.8 19.3 283 8-322 170-502 (517)
44 PLN02320 seryl-tRNA synthetase 100.0 5.1E-31 1.1E-35 266.5 19.5 282 8-324 173-491 (502)
45 TIGR00415 serS_MJ seryl-tRNA s 100.0 6.5E-30 1.4E-34 256.3 23.1 269 19-318 188-498 (520)
46 KOG2298|consensus 100.0 1.7E-30 3.8E-35 252.0 12.3 375 44-421 35-597 (599)
47 PF00587 tRNA-synt_2b: tRNA sy 100.0 8.4E-30 1.8E-34 228.9 15.1 149 57-206 1-153 (173)
48 COG0172 SerS Seryl-tRNA synthe 100.0 1.5E-28 3.3E-33 243.0 16.8 281 8-323 111-418 (429)
49 cd00774 GlyRS-like_core Glycyl 99.9 7.6E-28 1.6E-32 228.8 10.8 159 29-198 2-168 (254)
50 TIGR00443 hisZ_biosyn_reg ATP 99.9 9.3E-26 2E-30 221.2 14.0 150 48-207 1-153 (314)
51 KOG2509|consensus 99.9 2.2E-25 4.7E-30 216.1 15.1 284 7-323 124-432 (455)
52 cd00773 HisRS-like_core Class 99.9 5E-25 1.1E-29 210.8 15.6 144 55-207 2-148 (261)
53 PRK12293 hisZ ATP phosphoribos 99.9 3.3E-25 7.2E-30 213.0 14.0 145 42-207 6-151 (281)
54 PF13393 tRNA-synt_His: Histid 99.9 1.2E-24 2.6E-29 213.5 14.5 150 46-206 1-154 (311)
55 PRK12295 hisZ ATP phosphoribos 99.9 2.5E-22 5.3E-27 200.3 14.2 136 58-207 7-146 (373)
56 COG3705 HisZ ATP phosphoribosy 99.9 6.3E-22 1.4E-26 194.5 10.7 154 42-206 4-160 (390)
57 cd00862 ProRS_anticodon_zinc P 99.8 8.3E-20 1.8E-24 167.5 12.9 107 313-420 1-114 (202)
58 cd02426 Pol_gamma_b_Cterm C-te 99.8 1.4E-19 3.1E-24 153.5 12.6 104 313-417 18-127 (128)
59 cd00858 GlyRS_anticodon GlyRS 99.8 4.4E-19 9.6E-24 149.7 12.5 101 314-416 18-120 (121)
60 PF03129 HGTP_anticodon: Antic 99.8 2.2E-18 4.7E-23 138.8 10.0 90 324-414 1-93 (94)
61 PRK14938 Ser-tRNA(Thr) hydrola 99.7 1.9E-17 4.1E-22 161.3 13.8 113 301-414 249-365 (387)
62 cd00861 ProRS_anticodon_short 99.7 1.6E-17 3.4E-22 133.6 10.2 90 322-412 1-93 (94)
63 cd00768 class_II_aaRS-like_cor 99.7 1E-16 2.2E-21 147.7 16.9 206 58-304 2-211 (211)
64 TIGR02367 PylS pyrrolysyl-tRNA 99.7 2.2E-16 4.7E-21 156.5 13.7 134 56-202 240-376 (453)
65 cd00860 ThrRS_anticodon ThrRS 99.7 2.8E-16 6.1E-21 125.3 11.3 90 322-412 1-90 (91)
66 PRK12294 hisZ ATP phosphoribos 99.7 3.4E-16 7.3E-21 149.3 13.3 133 55-206 7-142 (272)
67 cd00738 HGTP_anticodon HGTP an 99.6 4.8E-15 1E-19 118.9 11.6 90 322-412 1-93 (94)
68 PRK09537 pylS pyrolysyl-tRNA s 99.6 3.5E-15 7.7E-20 148.4 13.1 133 58-202 206-340 (417)
69 PRK07080 hypothetical protein; 99.5 7.2E-13 1.6E-17 126.0 19.4 255 27-315 20-302 (317)
70 PRK04172 pheS phenylalanyl-tRN 99.5 1.2E-13 2.7E-18 143.0 10.2 142 44-198 222-404 (489)
71 cd00859 HisRS_anticodon HisRS 99.4 3E-12 6.5E-17 101.3 9.9 88 324-412 3-90 (91)
72 PTZ00326 phenylalanyl-tRNA syn 99.1 5.5E-10 1.2E-14 113.7 12.8 139 52-198 225-411 (494)
73 PRK09350 poxB regulator PoxA; 99.0 6.7E-10 1.4E-14 108.5 6.9 116 54-185 4-124 (306)
74 cd00669 Asp_Lys_Asn_RS_core As 99.0 4.6E-09 1E-13 100.6 11.6 117 56-194 2-121 (269)
75 KOG1035|consensus 98.8 1.7E-07 3.6E-12 102.5 19.2 343 48-416 925-1350(1351)
76 PF01409 tRNA-synt_2d: tRNA sy 98.6 3.5E-07 7.6E-12 86.4 11.9 136 56-203 17-162 (247)
77 cd00776 AsxRS_core Asx tRNA sy 98.6 2.9E-07 6.3E-12 90.6 10.7 114 53-185 22-137 (322)
78 COG0173 AspS Aspartyl-tRNA syn 98.6 2.8E-07 6.1E-12 93.5 10.4 118 53-194 139-261 (585)
79 cd00777 AspRS_core Asp tRNA sy 98.6 4.6E-07 9.9E-12 87.4 10.7 109 56-185 2-115 (280)
80 PF00152 tRNA-synt_2: tRNA syn 98.5 1.2E-06 2.6E-11 86.9 13.6 113 54-185 21-140 (335)
81 cd00775 LysRS_core Lys_tRNA sy 98.4 1.9E-06 4.1E-11 85.1 11.9 112 55-185 8-122 (329)
82 PF12745 HGTP_anticodon2: Anti 98.4 3.5E-06 7.7E-11 80.6 12.6 100 321-420 4-110 (273)
83 TIGR00462 genX lysyl-tRNA synt 98.4 1.1E-06 2.4E-11 85.8 8.8 123 56-199 2-130 (304)
84 cd00496 PheRS_alpha_core Pheny 98.4 6.6E-06 1.4E-10 76.6 13.1 125 58-196 3-132 (218)
85 TIGR00459 aspS_bact aspartyl-t 98.4 2.6E-06 5.6E-11 89.5 11.2 118 53-194 136-258 (583)
86 TIGR00468 pheS phenylalanyl-tR 98.3 3.5E-06 7.6E-11 81.9 11.3 130 54-198 70-204 (294)
87 PRK00484 lysS lysyl-tRNA synth 98.3 3.5E-06 7.7E-11 87.4 11.9 113 53-184 170-285 (491)
88 TIGR00458 aspS_arch aspartyl-t 98.3 4E-06 8.7E-11 85.7 12.0 114 53-184 131-245 (428)
89 COG0016 PheS Phenylalanyl-tRNA 98.3 1.3E-05 2.8E-10 78.1 14.7 139 44-196 100-244 (335)
90 PRK06462 asparagine synthetase 98.3 2.5E-06 5.4E-11 84.5 9.8 121 53-184 28-150 (335)
91 PRK00476 aspS aspartyl-tRNA sy 98.3 3.1E-06 6.7E-11 89.4 10.9 118 53-194 139-261 (588)
92 PTZ00417 lysine-tRNA ligase; P 98.3 4.8E-06 1E-10 87.5 12.0 100 54-174 252-355 (585)
93 PTZ00385 lysyl-tRNA synthetase 98.3 4.3E-06 9.3E-11 88.3 11.6 112 54-184 232-346 (659)
94 PRK05159 aspC aspartyl-tRNA sy 98.3 5.3E-06 1.2E-10 85.1 11.5 114 53-184 134-249 (437)
95 PLN02903 aminoacyl-tRNA ligase 98.3 5.2E-06 1.1E-10 87.7 11.2 118 53-193 201-323 (652)
96 PRK00488 pheS phenylalanyl-tRN 98.3 8.6E-06 1.9E-10 79.6 11.5 127 53-195 105-236 (339)
97 PRK12445 lysyl-tRNA synthetase 98.2 5.5E-06 1.2E-10 86.1 10.6 111 54-185 183-298 (505)
98 TIGR00499 lysS_bact lysyl-tRNA 98.2 4.7E-06 1E-10 86.5 10.2 114 53-185 170-286 (496)
99 COG2269 Truncated, possibly in 98.2 3.7E-06 8E-11 78.7 8.0 126 47-185 4-135 (322)
100 COG0442 ProS Prolyl-tRNA synth 98.2 6.3E-06 1.4E-10 84.7 9.8 108 313-420 276-393 (500)
101 PLN02502 lysyl-tRNA synthetase 98.2 8.3E-06 1.8E-10 85.4 10.8 112 54-184 228-342 (553)
102 PRK03932 asnC asparaginyl-tRNA 98.2 9.4E-06 2E-10 83.5 10.9 103 53-174 131-242 (450)
103 PLN02850 aspartate-tRNA ligase 98.2 6.9E-06 1.5E-10 85.8 9.6 113 54-184 224-338 (530)
104 PRK12820 bifunctional aspartyl 98.2 1.1E-05 2.4E-10 86.1 11.2 113 53-185 154-270 (706)
105 KOG2411|consensus 98.1 9.4E-07 2E-11 88.0 1.9 104 54-178 177-286 (628)
106 TIGR00457 asnS asparaginyl-tRN 98.1 1.4E-05 3E-10 82.3 9.5 102 54-174 135-245 (453)
107 PRK02983 lysS lysyl-tRNA synth 98.0 1.6E-05 3.6E-10 89.5 9.6 112 54-184 769-883 (1094)
108 PLN02853 Probable phenylalanyl 98.0 4.3E-05 9.4E-10 78.0 11.2 133 56-197 221-395 (492)
109 PTZ00401 aspartyl-tRNA synthet 97.9 3.4E-05 7.4E-10 80.8 8.8 113 54-184 212-326 (550)
110 PTZ00425 asparagine-tRNA ligas 97.9 8.3E-05 1.8E-09 78.0 11.6 34 53-86 213-246 (586)
111 COG0017 AsnS Aspartyl/asparagi 97.8 0.00011 2.4E-09 73.9 10.7 103 53-174 132-234 (435)
112 PLN02603 asparaginyl-tRNA synt 97.8 0.00017 3.7E-09 75.7 11.5 101 54-173 225-355 (565)
113 PLN02221 asparaginyl-tRNA synt 97.7 0.00019 4.1E-09 75.4 10.6 34 53-86 169-202 (572)
114 PLN02532 asparagine-tRNA synth 97.7 0.00027 5.8E-09 74.7 10.5 34 53-86 233-266 (633)
115 COG1190 LysU Lysyl-tRNA synthe 97.6 0.00026 5.6E-09 71.8 8.6 100 55-173 180-281 (502)
116 TIGR00470 sepS O-phosphoseryl- 97.5 0.00022 4.7E-09 71.9 6.8 86 108-202 180-267 (533)
117 PRK09616 pheT phenylalanyl-tRN 97.5 0.0012 2.5E-08 70.1 12.4 134 55-201 358-495 (552)
118 KOG1885|consensus 97.4 0.00029 6.3E-09 70.3 6.1 117 55-195 225-342 (560)
119 PLN02788 phenylalanine-tRNA sy 96.8 0.012 2.5E-07 59.4 10.9 105 56-174 68-181 (402)
120 cd00769 PheRS_beta_core Phenyl 96.6 0.0056 1.2E-07 56.0 7.1 129 59-198 3-140 (198)
121 KOG0554|consensus 96.2 0.005 1.1E-07 60.6 4.4 107 49-174 126-240 (446)
122 TIGR00471 pheT_arch phenylalan 96.2 0.045 9.7E-07 58.1 11.5 134 55-201 361-497 (551)
123 KOG0556|consensus 96.0 0.0066 1.4E-07 59.9 3.9 98 55-170 228-325 (533)
124 KOG2784|consensus 95.6 0.017 3.7E-07 56.3 4.7 132 58-198 214-387 (483)
125 PLN02265 probable phenylalanyl 94.8 0.13 2.8E-06 55.1 9.2 132 56-198 397-531 (597)
126 TIGR00469 pheS_mito phenylalan 94.7 0.18 4E-06 51.4 9.5 93 73-174 67-167 (460)
127 COG2024 Phenylalanyl-tRNA synt 93.7 0.027 5.9E-07 55.1 1.2 86 109-202 181-267 (536)
128 PRK06253 O-phosphoseryl-tRNA s 93.6 0.18 3.8E-06 52.2 6.8 84 109-201 182-267 (529)
129 KOG0555|consensus 92.1 0.33 7.2E-06 48.1 6.0 102 54-174 242-343 (545)
130 CHL00192 syfB phenylalanyl-tRN 91.0 1.4 3.1E-05 48.2 10.2 130 54-200 396-535 (704)
131 COG0072 PheT Phenylalanyl-tRNA 90.5 0.74 1.6E-05 49.9 7.5 90 55-149 350-442 (650)
132 TIGR00472 pheT_bact phenylalan 84.2 2.1 4.5E-05 47.7 6.4 126 61-198 496-632 (798)
133 PRK00629 pheT phenylalanyl-tRN 83.7 1.7 3.6E-05 48.4 5.4 90 54-148 485-576 (791)
134 cd00003 PNPsynthase Pyridoxine 73.8 11 0.00025 35.1 6.7 57 320-379 82-150 (234)
135 TIGR00559 pdxJ pyridoxine 5'-p 73.0 12 0.00026 35.0 6.7 67 301-379 72-150 (237)
136 PRK05265 pyridoxine 5'-phospha 71.8 14 0.00029 34.7 6.7 68 301-380 75-154 (239)
137 PF03740 PdxJ: Pyridoxal phosp 71.4 12 0.00025 35.2 6.2 66 301-378 73-150 (239)
138 TIGR00344 alaS alanine--tRNA l 64.5 42 0.0009 37.8 9.9 103 61-198 2-112 (851)
139 COG0854 PdxJ Pyridoxal phospha 55.6 38 0.00083 31.3 6.3 57 320-379 83-151 (243)
140 PLN02900 alanyl-tRNA synthetas 46.5 5E+02 0.011 29.7 15.8 112 59-198 14-135 (936)
141 PLN03194 putative disease resi 45.0 1.3E+02 0.0029 27.1 8.0 62 321-383 25-91 (187)
142 PRK12293 hisZ ATP phosphoribos 43.8 22 0.00048 34.3 3.2 10 300-309 271-280 (281)
143 PF01520 Amidase_3: N-acetylmu 39.8 1.1E+02 0.0023 26.7 6.8 50 334-384 26-78 (175)
144 PF03853 YjeF_N: YjeF-related 39.4 1.2E+02 0.0026 26.7 7.0 62 321-382 24-90 (169)
145 COG2179 Predicted hydrolase of 38.5 87 0.0019 27.8 5.7 72 301-386 48-122 (175)
146 cd05569 PTS_IIB_fructose PTS_I 38.1 1.8E+02 0.0039 22.9 7.2 78 335-417 15-92 (96)
147 PRK03972 ribosomal biogenesis 34.0 3.1E+02 0.0066 25.3 8.7 71 327-398 3-74 (208)
148 PF00731 AIRC: AIR carboxylase 32.3 1.8E+02 0.004 25.2 6.7 59 324-382 2-64 (150)
149 PRK00252 alaS alanyl-tRNA synt 30.9 8.3E+02 0.018 27.7 15.3 109 59-198 5-117 (865)
150 cd03015 PRX_Typ2cys Peroxiredo 29.2 2.9E+02 0.0064 24.0 7.8 91 323-422 64-163 (173)
151 cd02696 MurNAc-LAA N-acetylmur 28.6 2.1E+02 0.0046 24.7 6.8 52 334-385 27-80 (172)
152 PF02780 Transketolase_C: Tran 27.0 1E+02 0.0022 25.4 4.2 31 323-354 10-40 (124)
153 TIGR00715 precor6x_red precorr 26.9 2.6E+02 0.0056 26.5 7.4 64 342-416 190-255 (256)
154 cd02549 Peptidase_C39A A sub-f 26.8 3.5E+02 0.0077 22.1 8.1 67 340-413 48-131 (141)
155 cd00673 AlaRS_core Alanyl-tRNA 26.1 5.5E+02 0.012 24.1 15.4 104 60-198 3-114 (232)
156 PRK10382 alkyl hydroperoxide r 26.0 2.5E+02 0.0054 25.2 6.8 85 325-416 66-156 (187)
157 PF08921 DUF1904: Domain of un 25.5 98 0.0021 25.3 3.6 31 49-79 61-92 (108)
158 COG2099 CobK Precorrin-6x redu 25.0 2.5E+02 0.0055 26.6 6.7 17 340-356 57-73 (257)
159 PF09837 DUF2064: Uncharacteri 24.2 3.5E+02 0.0075 22.4 6.9 57 322-383 10-69 (122)
160 smart00255 TIR Toll - interleu 23.0 3.6E+02 0.0078 22.1 7.0 65 323-387 2-69 (140)
161 PF08357 SEFIR: SEFIR domain; 22.7 1.3E+02 0.0028 25.5 4.2 57 324-382 2-67 (150)
162 PF04430 DUF498: Protein of un 22.3 1E+02 0.0022 25.0 3.2 52 323-376 54-105 (110)
163 cd00248 Mth938-like Mth938-lik 22.2 2.1E+02 0.0045 23.2 5.0 45 323-369 53-97 (109)
164 cd02969 PRX_like1 Peroxiredoxi 21.9 5.1E+02 0.011 22.3 8.0 80 335-424 77-160 (171)
165 TIGR02883 spore_cwlD N-acetylm 21.8 3.2E+02 0.007 24.3 6.7 51 334-384 28-94 (189)
166 cd05017 SIS_PGI_PMI_1 The memb 21.6 4.4E+02 0.0095 21.3 7.1 57 319-379 40-96 (119)
167 PRK08057 cobalt-precorrin-6x r 21.0 4.2E+02 0.009 25.0 7.5 63 343-416 184-247 (248)
168 TIGR01162 purE phosphoribosyla 20.3 2.7E+02 0.0059 24.4 5.6 28 327-354 3-30 (156)
No 1
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-73 Score=587.17 Aligned_cols=395 Identities=41% Similarity=0.710 Sum_probs=373.2
Q ss_pred ChhHHHHHHhcCCcccc-cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceE
Q psy10612 25 VLWNRKIGREQELFFFH-ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~-~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~ 103 (426)
..|||+||++++||++. ..++|+++|+|.|+.+++.|++++++.+.++||++|.||.++..++|..||||+.+.++||.
T Consensus 137 ~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~ 216 (545)
T PRK14799 137 ETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIV 216 (545)
T ss_pred cCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcce
Confidence 57999999999999886 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHH
Q psy10612 104 FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVG 183 (426)
Q Consensus 104 ~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~ 183 (426)
++..+++++||||+|++++++|+++..||++||+|+|++|+|||+|.++..+||+|+|||+|.|+|+||.++++.+|+..
T Consensus 217 ~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~ 296 (545)
T PRK14799 217 FNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKM 296 (545)
T ss_pred eeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHH
Confidence 95558999999999999999999999999999999999999999999998899999999999999999999888889888
Q ss_pred HHHHHHHHHHHcCCe---EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCc
Q psy10612 184 ALDFLRNVYSIFGFT---FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 260 (426)
Q Consensus 184 ~~~~~~~il~~lgi~---~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 260 (426)
+++++.++++.||++ +.+.+++||.+++|.++.|+++++.+++.|.+.|.++...++.++|++|++++.+.|++++.
T Consensus 297 ~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v~dalgr~ 376 (545)
T PRK14799 297 LISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEIRDSLGRW 376 (545)
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccccCccceEehhhcCch
Confidence 889999999999995 89999999988899999999999999999999999999988999999999998888999999
Q ss_pred eeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHH
Q psy10612 261 HQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQ 340 (426)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ 340 (426)
|+|+++++||+++.+|+++|.+.++...+|+.+|++++||+||++++|++++.+.||.|++|.||+|+|++++..++|.+
T Consensus 377 ~q~~Tiqldf~lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~~G~~P~wlaP~qV~Iipi~e~~~~~A~~ 456 (545)
T PRK14799 377 WQLSTIQVDFNLPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDEVNEYAEK 456 (545)
T ss_pred hhhhhhhhhcCcccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCHHHHHHHHH
Confidence 99999999999999999999998887778999998888899999999988755679999999999999999888899999
Q ss_pred HHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 341 VKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 341 ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
|++.||++|++|++|+ ++.++++|+++|++.|+||++|||++|+++|+|+||+|++++|..++++++++.+.+.++.+.
T Consensus 457 Ia~~LR~~GirVelD~-~~~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~~~~ 535 (545)
T PRK14799 457 VLNDMRKRRIRAEIDY-AGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEIAQRD 535 (545)
T ss_pred HHHHHHhCCCEEEEEC-CCCCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHHhhcc
Confidence 9999999999999999 588999999999999999999999999999999999999999999999999999998888764
No 2
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.2e-72 Score=594.37 Aligned_cols=393 Identities=47% Similarity=0.851 Sum_probs=372.9
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..+|++|+++++||++.+.++|+++|+|.|+.+++.|++++++.+.++||++|.||+|++.++|.++||++.+.++|| +
T Consensus 244 ~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy-~ 322 (639)
T PRK12444 244 KRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMY-F 322 (639)
T ss_pred cCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcC-e
Confidence 458999999999999987899999999999999999999999999999999999999999999999999999999999 6
Q ss_pred eeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHH
Q psy10612 105 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVG 183 (426)
Q Consensus 105 ~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~ 183 (426)
.|. +++++||||+|+++++++++++.|+++||+|+||+|+|||+|++++++||+|+|||+|.|+|+||.++++++|+..
T Consensus 323 ~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~ 402 (639)
T PRK12444 323 SEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKS 402 (639)
T ss_pred ecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHH
Confidence 665 7899999999999999999988999999999999999999999987899999999999999999998889999988
Q ss_pred HHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceee
Q psy10612 184 ALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC 263 (426)
Q Consensus 184 ~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 263 (426)
+++++.++|+.||++|.+.++++|+|++|+++.|+.++..+.++|+..+.+|.++++.+++|+|++|+.+.|..++.|+|
T Consensus 403 ~~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~ 482 (639)
T PRK12444 403 VMAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQC 482 (639)
T ss_pred HHHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhcc
Confidence 89999999999999999999999999999999999999999999999999999999888899999998888888899999
Q ss_pred eeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC-ChHHHHHHHH
Q psy10612 264 ATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAE-PFNEYADQVK 342 (426)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~-~~~~~a~~ia 342 (426)
++.++|+.++.+||++|++.+|....|++++++.+||+||++++|++++++.||.|++|.+|+|+|+++ +..++|.+|+
T Consensus 483 ~t~~~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a~~la 562 (639)
T PRK12444 483 GTIQLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYADEVA 562 (639)
T ss_pred cceeeecccccccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHHHHHH
Confidence 999999999999999999998887789988888888899999999998888999999999999999998 6889999999
Q ss_pred HHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhc
Q psy10612 343 NKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENR 419 (426)
Q Consensus 343 ~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 419 (426)
+.||++|++|++|+ ++.++++|+++|++.|+||++|||++|+++|+|+||++++++|.+++++++++.+++.++.+
T Consensus 563 ~~LR~~Gi~veid~-~~~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~~~ 638 (639)
T PRK12444 563 DKLAQAGIRVERDE-RDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIKNR 638 (639)
T ss_pred HHHHHCCCEEEEEC-CCCCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhhcC
Confidence 99999999999999 58999999999999999999999999999999999999999999999999999998877654
No 3
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=6.2e-71 Score=588.81 Aligned_cols=394 Identities=65% Similarity=1.169 Sum_probs=375.0
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..+|++||++++||++.+.++|+++|+|.|++++++|++++++.+.++||++|.||.|.+.++|..||||+.+.++||.|
T Consensus 291 ~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~ 370 (686)
T PLN02908 291 KRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF 370 (686)
T ss_pred ccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE
Confidence 67999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHH
Q psy10612 105 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 184 (426)
Q Consensus 105 ~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~ 184 (426)
...+++++||||+|+++++++++...|+++||+|+|++|+|||+|.++.++||+|+|||+|.|+|+||.++++.+|+..+
T Consensus 371 ~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~ 450 (686)
T PLN02908 371 EIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGV 450 (686)
T ss_pred ecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHH
Confidence 66689999999999999999999999999999999999999999999878999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceeee
Q psy10612 185 LDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 264 (426)
Q Consensus 185 ~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 264 (426)
++++.++++.||++|++.+++||.+++|..+.|+.++..|.+.|++.+..+..++++++|+||++++.+.|++++.|+|.
T Consensus 451 l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~ 530 (686)
T PLN02908 451 LDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCA 530 (686)
T ss_pred HHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeecc
Confidence 99999999999999999999999999999999999999999999999999988899999999999988999999999999
Q ss_pred eeeeeecCCeEEeEEEeCCCCc-cccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHH
Q psy10612 265 TIQLDFQLPIRFNLAYVNEKGE-KNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKN 343 (426)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~-y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~ 343 (426)
++++||+++.+||++|....+. ...|+.+|++++||+||++++|.+++++.||.|++|.||+|+|++++..++|.+|++
T Consensus 531 t~q~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~ 610 (686)
T PLN02908 531 TVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRA 610 (686)
T ss_pred ceeecccCHhhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHH
Confidence 9999999999999999987665 467999999999999999999999888899999999999999999988999999999
Q ss_pred HHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhc
Q psy10612 344 KIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENR 419 (426)
Q Consensus 344 ~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 419 (426)
.||++|++|++|. ++.++++|+++|++.|+||++|||++|.++|+|+||++++++|.+++++++++.+++..+.+
T Consensus 611 ~LR~~Gi~vevd~-~~~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~~ 685 (686)
T PLN02908 611 QLHAAGFYVDVDV-TDRKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAEF 685 (686)
T ss_pred HHHHCCCEEEEEC-CCCCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhhc
Confidence 9999999999998 58899999999999999999999999999999999999999999999999999998776654
No 4
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-70 Score=580.79 Aligned_cols=396 Identities=50% Similarity=0.861 Sum_probs=370.0
Q ss_pred ChhHHHHHHhcCCccccc-CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceE
Q psy10612 25 VLWNRKIGREQELFFFHE-LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~-~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~ 103 (426)
..+|++|+++.+||+..+ .++|+++|+|.++.++++|++++++.+.++||++|.||+|++.++|.++|||+.+.++||.
T Consensus 175 ~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~ 254 (575)
T PRK12305 175 KRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFP 254 (575)
T ss_pred hccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccc
Confidence 348999999999998765 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHH
Q psy10612 104 FDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIV 182 (426)
Q Consensus 104 ~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~ 182 (426)
|.|. ++.++|||++|+++++++++...++++||+|+||+|+|||+|.++.++|++|+|||+|.|+|+||.++++.+++.
T Consensus 255 ~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~ 334 (575)
T PRK12305 255 PMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEIL 334 (575)
T ss_pred ccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHH
Confidence 9877 899999999999999999998888889999999999999999997689999999999999999999887666667
Q ss_pred HHHHHHHHHHHHcCCe-EEEEEecCC-CccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCc
Q psy10612 183 GALDFLRNVYSIFGFT-FNLRLSTRP-EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 260 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~-~~i~~~~~~-~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 260 (426)
.+++++.++|+.||++ +.+.+++++ .+++|+.+.|+++.+.+.+.++..|+++..+++..+||+|++++.+.|++++.
T Consensus 335 e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~ 414 (575)
T PRK12305 335 KVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGRE 414 (575)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCc
Confidence 7778889999999998 899999987 67899999999999999999998899999998888999999888888999999
Q ss_pred eeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHH
Q psy10612 261 HQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQ 340 (426)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ 340 (426)
|+|+++++||.++.+||++|++.+|....|+++|++++||+||++++|.|++++.||.|++|.||+|+|++++..++|.+
T Consensus 415 ~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~ 494 (575)
T PRK12305 415 WQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLAPVQVVIIPVADAHNEYAEE 494 (575)
T ss_pred eeccceeeecccHhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHhCCCCCCCCCCccEEEEEeChHHHHHHHH
Confidence 99999999999999999999988877667888899988899999999999877899999999999999999988999999
Q ss_pred HHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 341 VKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 341 ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
|++.||++|++|++|+ ++.++|+||++|++.|+||+||||++|+++|+|+||++++++|..++++++++.|++.++++.
T Consensus 495 i~~~Lr~~gi~v~~d~-~~~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~~~ 573 (575)
T PRK12305 495 VAKKLRAAGIRVEVDT-SNERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAERE 573 (575)
T ss_pred HHHHHHHCCCEEEEEC-CCCCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhccc
Confidence 9999999999999999 588999999999999999999999999999999999999999999999999999999888765
Q ss_pred c
Q psy10612 421 L 421 (426)
Q Consensus 421 ~ 421 (426)
.
T Consensus 574 ~ 574 (575)
T PRK12305 574 N 574 (575)
T ss_pred C
Confidence 4
No 5
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=1.7e-69 Score=570.62 Aligned_cols=394 Identities=43% Similarity=0.768 Sum_probs=374.9
Q ss_pred ChhHHHHHHhcCCccccc-CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceE
Q psy10612 25 VLWNRKIGREQELFFFHE-LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~-~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~ 103 (426)
..||++||++++||++.. .++|++.|+|.|++++++|++++++...++||++|.||.|.+.++|..||||+.+.++||.
T Consensus 216 ~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~ 295 (614)
T PLN02837 216 RRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYD 295 (614)
T ss_pred hCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhccc
Confidence 569999999999998875 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHH
Q psy10612 104 FDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIV 182 (426)
Q Consensus 104 ~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~ 182 (426)
+.+. ++.++|||+.|+.++.++++.+.||++||+|++++|+|||+|.++.++||.|+|||+|.|+|+|+.+++++.|+.
T Consensus 296 ~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~ 375 (614)
T PLN02837 296 QMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIR 375 (614)
T ss_pred ccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHH
Confidence 9775 778899999999999999999999999999999999999999976689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCe-EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCce
Q psy10612 183 GALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPH 261 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 261 (426)
.+++++.++++.||++ +.+.++++|.+++|.++.|++++..|++.|...+..+...+|+++|+||++|+.+.|.+|+.|
T Consensus 376 ~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~ 455 (614)
T PLN02837 376 GVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKW 455 (614)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCcee
Confidence 9999999999999998 788889998889999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHH
Q psy10612 262 QCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQV 341 (426)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~i 341 (426)
+|+++++||+++.+|+++|++.+|....|+++|++++||+||++++|+|++++.||.|++|.||+|+|++++..++|.+|
T Consensus 456 q~~tiqldf~~~~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Lie~~~g~~P~~laP~qV~IIpi~~~~~~~A~~I 535 (614)
T PLN02837 456 QCSTIQVDFNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPVQARVLPVTDNELEYCKEV 535 (614)
T ss_pred eecceeEeecchhhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHHHHcCCCCCCCCCCccEEEEEeChHHHHHHHHH
Confidence 99999999999999999999999877789999999999999999999999888899999999999999998888999999
Q ss_pred HHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 342 KNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 342 a~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
++.||++|++|+++. +.++|+|+++|++.|+||+|+||++|.++|+|+||+++++++..++++++++.+.+.++.++
T Consensus 536 a~~Lr~~GirVev~~--~~slgkkir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~~~ 612 (614)
T PLN02837 536 VAKLKAKGIRAEVCH--GERLPKLIRNAETQKIPLMAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVENRT 612 (614)
T ss_pred HHHHHHCCCEEEEeC--CCCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHhhcc
Confidence 999999999999953 68999999999999999999999999999999999999999999999999999999888776
No 6
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-68 Score=569.20 Aligned_cols=396 Identities=51% Similarity=0.905 Sum_probs=367.2
Q ss_pred hhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee
Q psy10612 26 LWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 105 (426)
Q Consensus 26 ~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~ 105 (426)
.+|+.++++.++|++.+.++|+++|+|.++.++++|++++++.+.++||++|.||+|++.++|.++|+|+.+.++||.|.
T Consensus 241 ~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~ 320 (638)
T PRK00413 241 RDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTT 320 (638)
T ss_pred ccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceee
Confidence 48999999999999998889999999999999999999999999999999999999999999999999999999999998
Q ss_pred eC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHH
Q psy10612 106 VE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 184 (426)
Q Consensus 106 d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~ 184 (426)
|+ ++.++|||++|++++++++++..+++++|+|+||+|+|||+|+++.++|++|+|||+|+|+|+||.++++.+++..+
T Consensus 321 d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~ei 400 (638)
T PRK00413 321 ESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKV 400 (638)
T ss_pred cCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHH
Confidence 87 79999999999999999999888888999999999999999999877899999999999999999988666665666
Q ss_pred HHHHHHHHHHcCCe-EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceee
Q psy10612 185 LDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC 263 (426)
Q Consensus 185 ~~~~~~il~~lgi~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 263 (426)
++++.++|+.||++ +.+.+++++.+++|.++.|+++.+.+.+.|...+.++..+++..++++|+++..+.+++++.+++
T Consensus 401 i~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 480 (638)
T PRK00413 401 IDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQC 480 (638)
T ss_pred HHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEEe
Confidence 77789999999995 99999998877899998999999999999998888888888888888999887788888999999
Q ss_pred eeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHH
Q psy10612 264 ATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKN 343 (426)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~ 343 (426)
.++++||.++.+||++|++..+....|+++|++.+||+||++++|.+++++.||.|++|.||+|+|++++..++|.+|++
T Consensus 481 ~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~ 560 (638)
T PRK00413 481 GTIQLDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYAKEVAK 560 (638)
T ss_pred ccEeecccChhhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHHHHHHH
Confidence 99999999999999999987765556888888888889999999988877789999999999999999888899999999
Q ss_pred HHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcccc
Q psy10612 344 KIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLK 422 (426)
Q Consensus 344 ~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~~~ 422 (426)
.||++|++|++|+ ++.++++|+++|++.|+||+||||++|+++|+|+||++++++|.+++++++++.|++.++++.++
T Consensus 561 ~Lr~~gi~v~~d~-~~~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~~~~~ 638 (638)
T PRK00413 561 KLKAAGIRVEVDL-RNEKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIASRSLK 638 (638)
T ss_pred HHHhCCCEEEEEC-CCCCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHhhccCC
Confidence 9999999999999 58999999999999999999999999999999999999999999999999999999999888764
No 7
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=2.4e-68 Score=561.79 Aligned_cols=389 Identities=51% Similarity=0.892 Sum_probs=359.9
Q ss_pred ChhHHHHHHhcCCccccc-CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceE
Q psy10612 25 VLWNRKIGREQELFFFHE-LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~-~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~ 103 (426)
..+|++|++++|||+..+ .++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.++||++.+.++||+
T Consensus 169 ~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~ 248 (563)
T TIGR00418 169 KRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFP 248 (563)
T ss_pred cCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcce
Confidence 458999999999998864 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHH
Q psy10612 104 FDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIV 182 (426)
Q Consensus 104 ~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~ 182 (426)
|.|+ |+.++||||+|++++++++++..++++||+|+||+|+|||+|.++.++||+|+|||+|.|+|+||.++++++|+.
T Consensus 249 ~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~ 328 (563)
T TIGR00418 249 FTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFK 328 (563)
T ss_pred eccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHH
Confidence 9997 799999999999999999998888889999999999999999887679999999999999999999668999988
Q ss_pred HHHHHHHHHHHHcCCe-EEEEEecC-CCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCc
Q psy10612 183 GALDFLRNVYSIFGFT-FNLRLSTR-PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 260 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~-~~i~~~~~-~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 260 (426)
.+++++.++|+.||++ +.+.++.+ +.+++|.+..|+++...+.+.|+..++++..+++.+.+|+|++++.+.|.+++.
T Consensus 329 ~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~ 408 (563)
T TIGR00418 329 NQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGRE 408 (563)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEeecCCCCc
Confidence 8889999999999998 67888876 446788888899999999999999999999988877889999888788888999
Q ss_pred eeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHH
Q psy10612 261 HQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQ 340 (426)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ 340 (426)
|+|+++++++..+.+||++|++.+|....|++++++..||+|||+++|++++++.||.|++|.+|+|+|++++..++|.+
T Consensus 409 ~~~~t~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi~~~~~~~~~a~~ 488 (563)
T TIGR00418 409 WQCATVQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVIPVNERHLDYAKK 488 (563)
T ss_pred eeeceeeeccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEEEccchHHHHHHH
Confidence 99999999999999999999988887667887777666679999999988878889988999999999999988999999
Q ss_pred HHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHH
Q psy10612 341 VKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGK 414 (426)
Q Consensus 341 ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~ 414 (426)
|++.||++|++|++|+ ++.++|+|+++|++.|+|++||||++|+++|+|+||++++++|.+++++++++.+++
T Consensus 489 ia~~LR~~Gi~v~~d~-~~~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 489 VAQKLKKAGIRVDVDD-RNERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred HHHHHHHcCCEEEEEC-CCCCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHh
Confidence 9999999999999999 588999999999999999999999999999999999999999999999999888764
No 8
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=3e-66 Score=541.60 Aligned_cols=390 Identities=26% Similarity=0.443 Sum_probs=361.7
Q ss_pred ChhHHHHHHhcCCccccc-CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceE
Q psy10612 25 VLWNRKIGREQELFFFHE-LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~-~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~ 103 (426)
.++|++||+++|||++.+ ..+|+..|+|.|++++++|++++++.+.++||++|.||.+...++|..+||++.|+++||.
T Consensus 196 ~~dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~ 275 (613)
T PRK03991 196 EPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYR 275 (613)
T ss_pred CCCHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceE
Confidence 459999999999998865 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeecc-ccccCCCCCCCCCccceeEeEcCeeEecCc-cchHHHH
Q psy10612 104 FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGV-LHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEI 181 (426)
Q Consensus 104 ~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~-~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~-~~~~~e~ 181 (426)
+.+.+++++||||+|++++.+++++..||++||+|++++|+ |||+|.++..+||.|+|||+|.|+|+||.+ +++.+|+
T Consensus 276 v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~ 355 (613)
T PRK03991 276 VKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEF 355 (613)
T ss_pred ecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHH
Confidence 98778899999999999999999999999999999999999 999999986799999999999999999997 6999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCcee--CCCCCccccCccceeeecccCC
Q psy10612 182 VGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTE--NPGDGAFYGPKIDITITDALKR 259 (426)
Q Consensus 182 ~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~ 259 (426)
..+++++.++++.||++|.+.++.. .+.|+.+++.|++++...|.++.. .++.+++++|++++.+.|++++
T Consensus 356 ~~~l~~~~~i~~~lGl~~~~~~~~t-------~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr 428 (613)
T PRK03991 356 EKQYEMILETGEDLGRDYEVAIRFT-------EDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGR 428 (613)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCH-------HHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCC
Confidence 9999999999999999988877441 245666777888888888888765 5778889999999888899999
Q ss_pred ceeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCC--------CCCCCCCCceEEEEeCC
Q psy10612 260 PHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAG--------KWPFWISPRQGIVIPVA 331 (426)
Q Consensus 260 ~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~--------~~p~~~ap~~V~Vi~~~ 331 (426)
.|+++|+++|+..+.+||++|++.+|....|++|+|+++||++|++++|+|+++. .||.|+||+||+|+|++
T Consensus 429 ~~q~~T~qld~~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~ 508 (613)
T PRK03991 429 PIENPTVQIDVENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVS 508 (613)
T ss_pred EEEEeeeecCcccchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeC
Confidence 9999999999999999999999998876679999999999999999999998644 49999999999999999
Q ss_pred CChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHH
Q psy10612 332 EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITR 411 (426)
Q Consensus 332 ~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~ 411 (426)
++..++|.+|++.||++|++|++|+ ++.++|+|+++|++.|+||+||||++|+++|+|+||+|+++++..++++++++.
T Consensus 509 e~~~~~A~eIa~~Lr~~GirV~lDd-r~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~ 587 (613)
T PRK03991 509 ERHLDYAEEVADKLEAAGIRVDVDD-RDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIER 587 (613)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEC-CCCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHH
Confidence 8889999999999999999999999 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccc
Q psy10612 412 FGKLKENRTLK 422 (426)
Q Consensus 412 i~~~~~~~~~~ 422 (426)
+.+.++++..+
T Consensus 588 l~~~~~~~p~~ 598 (613)
T PRK03991 588 IKEETKGYPYR 598 (613)
T ss_pred HHHHHhcCCCC
Confidence 99998876544
No 9
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-66 Score=528.41 Aligned_cols=397 Identities=49% Similarity=0.865 Sum_probs=381.3
Q ss_pred CChhHHHHHHhcCCcccc-cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccce
Q psy10612 24 FVLWNRKIGREQELFFFH-ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMF 102 (426)
Q Consensus 24 ~~~~h~~l~~~~~l~~~~-~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y 102 (426)
...+||+||++++||.+. ..++|+..|+|.|+.+++.|+++++.....+||++|.||.+...++|..||||+.|.+.||
T Consensus 188 ~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf 267 (589)
T COG0441 188 KKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMF 267 (589)
T ss_pred cCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccce
Confidence 378999999999999988 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHH
Q psy10612 103 SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIV 182 (426)
Q Consensus 103 ~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~ 182 (426)
.+...+++++|||++|+.++.+|++...||++||+|+++.|.|||+|.++..+||.|+|.|+|.|+|+||.+++..+|+.
T Consensus 268 ~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~ 347 (589)
T COG0441 268 LTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFK 347 (589)
T ss_pred eeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHH
Confidence 99877899999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHcCCe-EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCce
Q psy10612 183 GALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPH 261 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 261 (426)
.+++++..+++.+|++ |.+.++++| +++|+++.|+.++..|.+.++..+.++...+|.++|||||+++.+.|++++.|
T Consensus 348 ~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~ 426 (589)
T COG0441 348 GILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREW 426 (589)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCC-cccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcce
Confidence 9999999999999997 999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHH
Q psy10612 262 QCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQV 341 (426)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~i 341 (426)
+|+|+++||.++.+|+++|++.++....||++|++++|++||.+++|+|++.+.+|.|++|.||+|+|++++..++|.++
T Consensus 427 q~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v 506 (589)
T COG0441 427 QLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHRAILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEV 506 (589)
T ss_pred ecceEEEecCChhhceEEEEcCCCCccCCEEEEeccchhHHHHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHH
Confidence 99999999999999999999988877899999999999999999999998888999999999999999999989999999
Q ss_pred HHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhccc
Q psy10612 342 KNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTL 421 (426)
Q Consensus 342 a~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~~ 421 (426)
++.|++.|++|++|+ ++.++++|++.|...++||++|||++|.+++.|++|.+.++++..++++++++.+++..+++..
T Consensus 507 ~~~L~~~giRvdvD~-~~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~~~ 585 (589)
T COG0441 507 AEKLRKAGIRVDIDD-RNEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGRPN 585 (589)
T ss_pred HHHHHHcCCeeeecc-cccchHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhcccC
Confidence 999999999999999 5999999999999999999999999999999999999999999999999999999998888765
Q ss_pred c
Q psy10612 422 K 422 (426)
Q Consensus 422 ~ 422 (426)
.
T Consensus 586 ~ 586 (589)
T COG0441 586 R 586 (589)
T ss_pred c
Confidence 4
No 10
>KOG1637|consensus
Probab=100.00 E-value=5.9e-66 Score=497.30 Aligned_cols=393 Identities=68% Similarity=1.183 Sum_probs=376.4
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..|||++|++.+|||+.+.++|..+|+|.|+++.+++.++++....+.||+||.||.+-...||+.||||++|.++||.|
T Consensus 162 ~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~ 241 (560)
T KOG1637|consen 162 KRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKF 241 (560)
T ss_pred hhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceee
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHH
Q psy10612 105 DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 184 (426)
Q Consensus 105 ~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~ 184 (426)
.-..++++|.|+.|++++-+|++.-+||+.||+|+..+|...|+|.++...||.|+|.|+|.|+++||++++...|+..+
T Consensus 242 e~eke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~ 321 (560)
T KOG1637|consen 242 EVEKEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGC 321 (560)
T ss_pred eechhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHH
Confidence 88778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceeee
Q psy10612 185 LDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 264 (426)
Q Consensus 185 ~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 264 (426)
+++...++.-+|..|.+.+++||++++|.-++|++++.+|+++|++.|.++..++|+++|||||||+.+.|++++.++|.
T Consensus 322 l~fl~~vY~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQca 401 (560)
T KOG1637|consen 322 LDFLDYVYGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCA 401 (560)
T ss_pred HHHHHHHHHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHH
Q psy10612 265 TIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNK 344 (426)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~ 344 (426)
++++||+++.+|++.|.+..|.+..||.++++++|++||+++.|.|+++++||.|++|.|+.|||+++....+|.++..+
T Consensus 402 TIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~q 481 (560)
T KOG1637|consen 402 TIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQ 481 (560)
T ss_pred eeeecccChhhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEcc---CCeeeeecHHHHHHHHHHHHhh
Q psy10612 345 IFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRD---NIVHGEFSVDDVITRFGKLKEN 418 (426)
Q Consensus 345 Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~---~~~q~~v~~~el~~~i~~~~~~ 418 (426)
|+.+|+-+++|. .+.+++|+++.|...+..|++|||++|.+.++|.|+.|+ +..+.+++++++.+.+.++.+.
T Consensus 482 l~~a~f~~Dld~-t~~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l~~~ 557 (560)
T KOG1637|consen 482 LEEAGFYVDLDP-TDSTLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKELKSE 557 (560)
T ss_pred HHhhhceeecCC-ccchHHHHHhhhhhcceeEEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHHhHhh
Confidence 999999999998 478999999999999999999999999999999999984 4456689999998888766543
No 11
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.2e-62 Score=495.30 Aligned_cols=375 Identities=20% Similarity=0.305 Sum_probs=314.4
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..+|+.|.+. |+| ++.++|+++|+|.|++++++|++++++++.++||++|.||+|++.++|..+|||+.|.++||++
T Consensus 20 ~~~~~ll~r~-g~~--~~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~ 96 (439)
T PRK12325 20 IVSHRLMLRA-GMI--RQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI 96 (439)
T ss_pred hHHHHHHHHc-CCc--cccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEE
Confidence 6688888877 764 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHH
Q psy10612 105 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIV 182 (426)
Q Consensus 105 ~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~ 182 (426)
+|. +++++||||+|+.++.++++...||++||+|+||+|+|||+|.++ ++||.|+|||+|.|+|+|+.+. ++..++.
T Consensus 97 ~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~-~~GL~R~reF~~~D~h~f~~~~~~a~~~~~ 175 (439)
T PRK12325 97 KDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRP-RFGVMRGREFLMKDAYSFDLDEEGARHSYN 175 (439)
T ss_pred ecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCC-CCCccccceEeEeccEEEeCCHHHHHHHHH
Confidence 887 789999999999999999999999999999999999999999888 6999999999999999999886 8899999
Q ss_pred HHHHHHHHHHHHcCCe-EEEEEecCCC------cc-----CCCc-----------------hhHHHHHHHHHHhhccCCC
Q psy10612 183 GALDFLRNVYSIFGFT-FNLRLSTRPE------KY-----LGEL-----------------EVWNKAEKQLEASLNSFGE 233 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~-~~i~~~~~~~------~~-----~G~~-----------------~~~~~~~~~l~~~l~~~~~ 233 (426)
.+++++.++|+.||++ +.+..++++. ++ +|.+ ..|+. ..|.++++..+.
T Consensus 176 ~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~ 253 (439)
T PRK12325 176 RMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQPIVDEWTS 253 (439)
T ss_pred HHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH--HHHHHHHhhhcc
Confidence 9999999999999998 4555555431 11 2322 22443 455656654333
Q ss_pred Cce---eCCCCCccc-cCccceeeec--ccCCceeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHH
Q psy10612 234 PWT---ENPGDGAFY-GPKIDITITD--ALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAI 307 (426)
Q Consensus 234 ~~~---~~~~~~~~~-~p~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~ 307 (426)
.+. ..++..+++ +|+.+....+ .+|..|+++ ..++.+||++|.+.+|.. .+++++|.++| ++|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg-----~~ys~~f~~~y~d~~g~~-~~i~~~~~GiG-ieRli~~ 326 (439)
T PRK12325 254 LYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFG-----TKYSEPMNAKVQGPDGKE-VPVHMGSYGIG-VSRLVAA 326 (439)
T ss_pred cccchhhhhccCCCCcCCCcceeecceEEEEeeecCc-----ccccHhcCCEEECCCCCE-EeEEEeeeECC-HHHHHHH
Confidence 221 122344556 7765543332 223333322 223567899999998874 56788888887 9999999
Q ss_pred HHHhc----CCCCCCCCCCceEEEEeC---CCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEE
Q psy10612 308 LTESY----AGKWPFWISPRQGIVIPV---AEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVV 380 (426)
Q Consensus 308 l~e~~----g~~~p~~~ap~~V~Vi~~---~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iii 380 (426)
|+|++ |+.||.+++|+||+|+|+ +++..++|.+|++.||++|++|++|+ ++.++|+|+++|+++|+||+|||
T Consensus 327 l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~-~~~~lg~ki~~a~~~giP~~iiV 405 (439)
T PRK12325 327 IIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDD-TDERPGAKFATMDLIGLPWQIIV 405 (439)
T ss_pred HHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCHhHHHHHHHHcCCCEEEEE
Confidence 99986 789999999999999999 45678899999999999999999999 58899999999999999999999
Q ss_pred ecCccCCCeEEEEEccCCeeeeecHHHHHHHHH
Q psy10612 381 GEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFG 413 (426)
Q Consensus 381 G~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~ 413 (426)
|++|+++|+|+||+|+++++..++++++++.|+
T Consensus 406 G~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 406 GPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred CCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 999999999999999999999999999987764
No 12
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-59 Score=489.77 Aligned_cols=381 Identities=24% Similarity=0.373 Sum_probs=302.7
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..+|+.|.+. |+ +++.++|+++|+|.|++++++|++++++.++++||++|.||+|++.++|.++|||+.++++||+|
T Consensus 20 ~~s~~ll~~a-g~--i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~ 96 (565)
T PRK09194 20 VISHQLLLRA-GY--IRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRL 96 (565)
T ss_pred hhhHHHHHhC-CC--ccccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEE
Confidence 5567777666 75 56688999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHH
Q psy10612 105 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIV 182 (426)
Q Consensus 105 ~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~ 182 (426)
+|+ +++++||||+|++++.++++++.++++||+|+||+++|||+|.++ ++||.|+|||+|.|+|+||.++ ++++++.
T Consensus 97 ~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp-~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~ 175 (565)
T PRK09194 97 KDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFIMKDAYSFHADEESLDETYD 175 (565)
T ss_pred ecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCC-CCcccccccEEEeeEEEEcCChHHHHHHHH
Confidence 998 889999999999999999999999999999999999999999666 6899999999999999999987 8899999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEecCC-------Ccc-----CCCch-----------hHHHH-------------------
Q psy10612 183 GALDFLRNVYSIFGFTFNLRLSTRP-------EKY-----LGELE-----------VWNKA------------------- 220 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~~~i~~~~~~-------~~~-----~G~~~-----------~~~~~------------------- 220 (426)
.+++++.++|++|||+|.+.++++. ++| .|.++ ..+++
T Consensus 176 ~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~ 255 (565)
T PRK09194 176 AMYQAYSRIFDRLGLDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDT 255 (565)
T ss_pred HHHHHHHHHHHHhCCccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecC
Confidence 9999999999999999988876641 000 01110 01110
Q ss_pred --------------------------------------------HHHHHHhhccCCCCce------eCCC-CCccccCc-
Q psy10612 221 --------------------------------------------EKQLEASLNSFGEPWT------ENPG-DGAFYGPK- 248 (426)
Q Consensus 221 --------------------------------------------~~~l~~~l~~~~~~~~------~~~~-~~~~~~p~- 248 (426)
..++++.+.....++. ...+ ..++++|-
T Consensus 256 p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v~P~G 335 (565)
T PRK09194 256 PNAKTIEELAEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFLGPVG 335 (565)
T ss_pred CCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCccCccc
Confidence 0111111110000000 0000 00011110
Q ss_pred ----cceeeec-----------------------ccCCce------------------ee---------eeeeeeecCCe
Q psy10612 249 ----IDITITD-----------------------ALKRPH------------------QC---------ATIQLDFQLPI 274 (426)
Q Consensus 249 ----~~~~~~~-----------------------~~~~~~------------------~~---------~~~~l~~~~~~ 274 (426)
+.+ +.| ..++++ .| ..+++.|+++.
T Consensus 336 l~~~v~v-iiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~ 414 (565)
T PRK09194 336 LPKDVPI-IADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGT 414 (565)
T ss_pred CCCCceE-EEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCc
Confidence 000 000 001111 11 12334577765
Q ss_pred ----EEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCceEEEEeCC---CChHHHHHHHHH
Q psy10612 275 ----RFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPRQGIVIPVA---EPFNEYADQVKN 343 (426)
Q Consensus 275 ----~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V~Vi~~~---~~~~~~a~~ia~ 343 (426)
.|+++|.+.+|.. .+++|+|+++| ++||+++++|++ |+.||.+++|++|+|+|++ ++..++|.+|++
T Consensus 415 ~ys~~~~~~~~~~~g~~-~~~~m~~~gIG-v~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~ 492 (565)
T PRK09194 415 KYSEAMNATVLDENGKA-QPLIMGCYGIG-VSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYA 492 (565)
T ss_pred chhhccCCEEECCCCCE-EeEEEeeEech-HHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHH
Confidence 4699999988874 57889999998 999999999984 7899999999999999997 457789999999
Q ss_pred HHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHH
Q psy10612 344 KIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFG 413 (426)
Q Consensus 344 ~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~ 413 (426)
.|+++|++|.+|+ ++.++|+||++|+++|+|++|+||++|+++|+|+||+|++++|..++++++.+.|.
T Consensus 493 ~L~~~gi~v~~Dd-r~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 493 ELQAAGIEVLLDD-RKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred HHhccCCeEEEEC-CCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 9999999999999 58899999999999999999999999999999999999999999999999998876
No 13
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=1.4e-59 Score=481.44 Aligned_cols=362 Identities=21% Similarity=0.321 Sum_probs=311.0
Q ss_pred CCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-cccccccc
Q psy10612 21 PISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSE 99 (426)
Q Consensus 21 ~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g~~~~~~~ 99 (426)
.-||..|+.+|+.+.||+.. ..++|+++|+|.|+.++++|++++++.++++||++|.||+|++.++|.++ +|++.|.+
T Consensus 5 ~~~f~~wy~~l~~~~~li~~-~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~ 83 (472)
T TIGR00408 5 MQDFSEWYHQILEKAEIIDY-YPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEP 83 (472)
T ss_pred cccHHHHHHHHHHHcCCccc-cCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcch
Confidence 45788999999999998765 45799999999999999999999999999999999999999999999975 58999999
Q ss_pred cceEeeeCC-----ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecC-
Q psy10612 100 NMFSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT- 173 (426)
Q Consensus 100 e~y~~~d~~-----~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~- 173 (426)
+||+++|.+ ++++||||+|++++.++++++.|+++||+|+||+++|||+|.++ ++||+|+|||+|.|+|+++.
T Consensus 84 e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~-~~gl~R~rEF~~~e~h~~~~~ 162 (472)
T TIGR00408 84 EVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKH-TRPFLRTREFTWQEAHTAHAT 162 (472)
T ss_pred hcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCC-CCCcceeeeeehhhhhhhhCC
Confidence 999999863 78999999999999999999999999999999999999999998 69999999999999996554
Q ss_pred ccchHHHHHHHHHHHHHHHH-HcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCcccee
Q psy10612 174 VEQIGDEIVGALDFLRNVYS-IFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDIT 252 (426)
Q Consensus 174 ~~~~~~e~~~~~~~~~~il~-~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~ 252 (426)
++++..++..+++++.++++ .|||++.+.....++++.|....| .++..
T Consensus 163 ~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~------------------------------~~e~~ 212 (472)
T TIGR00408 163 AEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTW------------------------------AFETI 212 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCccceE------------------------------EEeEE
Confidence 45999999999999999998 999997655432212222221111 12223
Q ss_pred eecccCCceeeeeee-eeecCCeEEeEEEeCCCCccccCEEEecccccch-HHHHHHHHHhc----CCCCCCCCCCceEE
Q psy10612 253 ITDALKRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSV-ERMVAILTESY----AGKWPFWISPRQGI 326 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~Ggl-eRll~~l~e~~----g~~~p~~~ap~~V~ 326 (426)
+.| ++.+++++++ +++.++.+||++|.+.+|.. ++++.+++| + +|++++|++++ |+.||++++|+||+
T Consensus 213 ~~d--gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~---~~~h~~s~G-i~eRli~~lie~~~d~~gl~~P~~iaP~qV~ 286 (472)
T TIGR00408 213 MPD--GRTLQIATSHNLGQNFAKTFEIKFETPTGDK---EYAYQTSYG-ISTRVIGALIAIHSDEKGLVLPPRVAPIQVV 286 (472)
T ss_pred EcC--CCEEEEeeeecccccccHhcCCEEECCCCCE---EeeEEcccc-HHHHHHHHHHHHhCCCCceeeChhhCcceEE
Confidence 333 4677888876 78888999999999887642 344456677 5 99999999874 57899999999999
Q ss_pred EEeC--C----CChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCee
Q psy10612 327 VIPV--A----EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVH 400 (426)
Q Consensus 327 Vi~~--~----~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q 400 (426)
|+|+ + ++..++|.+|++.||++|++|++|+ ++.++|+||++|++.|+|++|+||++|+++|+|+||+|++++|
T Consensus 287 Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~-r~~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq 365 (472)
T TIGR00408 287 IIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDD-RDNRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEK 365 (472)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCce
Confidence 9997 3 2468899999999999999999998 4779999999999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHhhccc
Q psy10612 401 GEFSVDDVITRFGKLKENRTL 421 (426)
Q Consensus 401 ~~v~~~el~~~i~~~~~~~~~ 421 (426)
..++++++++.+.++++..+.
T Consensus 366 ~~v~l~el~~~l~~~l~~~~~ 386 (472)
T TIGR00408 366 YQVSLDQLEERVVELLNNIQE 386 (472)
T ss_pred EEEEHHHHHHHHHHHHHHHHH
Confidence 999999999999888776543
No 14
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=1.1e-58 Score=482.70 Aligned_cols=381 Identities=20% Similarity=0.321 Sum_probs=302.5
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
...|+.|.+. |+ +++.++|+++|+|.|++++++|+++++++|.++||++|.||+|++.++|.++|+|+.++++||+|
T Consensus 20 ~~s~~ll~ra-g~--i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~ 96 (568)
T TIGR00409 20 VKSHQLLLRA-GF--IRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRL 96 (568)
T ss_pred hhhHHHHHhC-CC--ccccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEE
Confidence 4456666555 75 57789999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHH
Q psy10612 105 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIV 182 (426)
Q Consensus 105 ~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~ 182 (426)
+|+ +++++||||+|+.++.++++++.++++||+|+||+++|||+|.++ ++||.|+|||+|.|+|+||.++ .+++++.
T Consensus 97 ~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rp-r~Gl~R~REF~~~d~~~f~~~~~~a~~e~~ 175 (568)
T TIGR00409 97 KDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFIMKDAYSFHSDEESLDATYQ 175 (568)
T ss_pred ecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCC-CCCccccccEEEEEEEEEeCChHHHHHHHH
Confidence 998 889999999999999999999999999999999999999999777 6899999999999999999987 8899999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCccCCCc--------------h-----------hHHHH-----------------
Q psy10612 183 GALDFLRNVYSIFGFTFNLRLSTRPEKYLGEL--------------E-----------VWNKA----------------- 220 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~--------------~-----------~~~~~----------------- 220 (426)
.+.+++.++|++|||+|.++.+++ +.+|.. + ..+.+
T Consensus 176 ~~~~~y~~if~~LgL~~~~v~~~~--g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~ 253 (568)
T TIGR00409 176 KMYQAYSNIFSRLGLDFRPVQADS--GAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDK 253 (568)
T ss_pred HHHHHHHHHHHHhCCcceEEEecc--ccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCcccccccccccee
Confidence 999999999999999988776554 122111 1 01110
Q ss_pred --------------------------------------------------HHHHHHhh-ccCCCCce------eCC-CCC
Q psy10612 221 --------------------------------------------------EKQLEASL-NSFGEPWT------ENP-GDG 242 (426)
Q Consensus 221 --------------------------------------------------~~~l~~~l-~~~~~~~~------~~~-~~~ 242 (426)
+.++.+.+ .....+.. ... ...
T Consensus 254 ~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~~ 333 (568)
T TIGR00409 254 VDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASGP 333 (568)
T ss_pred ecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCCC
Confidence 00111111 00000000 000 001
Q ss_pred ccccCc-cc--e-eeec-----------------------ccCCce------------------ee---------eeeee
Q psy10612 243 AFYGPK-ID--I-TITD-----------------------ALKRPH------------------QC---------ATIQL 268 (426)
Q Consensus 243 ~~~~p~-~~--~-~~~~-----------------------~~~~~~------------------~~---------~~~~l 268 (426)
.+.||. +. + .+.| ..++++ .| ..+++
T Consensus 334 g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGh 413 (568)
T TIGR00409 334 GSLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGH 413 (568)
T ss_pred CccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEE
Confidence 122220 00 0 0000 001111 01 12334
Q ss_pred eecCCeE----EeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCceEEEEeCCC---ChHHH
Q psy10612 269 DFQLPIR----FNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPRQGIVIPVAE---PFNEY 337 (426)
Q Consensus 269 ~~~~~~~----~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V~Vi~~~~---~~~~~ 337 (426)
.|++|++ |+++|.+.+|.. .+++|+|+++| ++|++++++|++ |+.||+++||++|+|+|+.. +..+.
T Consensus 414 iF~LG~kYS~~~~~~~~d~~g~~-~~~~mgcyGIG-vsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~~~~~~ 491 (568)
T TIGR00409 414 IFQLGTKYSEALKATFLDENGKN-QFMTMGCYGIG-VSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQL 491 (568)
T ss_pred eccchhhhHHhcCCEEECCCCCE-EEEEEeCCcch-HHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChHHHHHH
Confidence 6777765 599999998864 58889999998 999999999985 79999999999999999863 46778
Q ss_pred HHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHH
Q psy10612 338 ADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGK 414 (426)
Q Consensus 338 a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~ 414 (426)
|.+|++.|+++|++|.+|+ ++.++|+||++|+.+|+|++|+||++++++|+|+|++|+++++..++++++++.|.+
T Consensus 492 a~~l~~~L~~~gi~v~~DD-r~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 492 AEELYSELLAQGVDVLLDD-RNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred HHHHHHHHHhCCCEEEEEC-CCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHhh
Confidence 9999999999999999999 588999999999999999999999999999999999999999999999999988753
No 15
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-59 Score=479.23 Aligned_cols=363 Identities=19% Similarity=0.316 Sum_probs=312.2
Q ss_pred CCCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhH-hccccccc
Q psy10612 20 MPISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYS 98 (426)
Q Consensus 20 ~~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~-sg~~~~~~ 98 (426)
...||..||.+|+++.+|++... ++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.
T Consensus 10 ~~~~f~~w~~~~~~~~~l~d~~~-v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~ 88 (477)
T PRK08661 10 RSEDFSEWYNDVVKKAELADYSP-VKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFA 88 (477)
T ss_pred cccchHHHHHHHHHHccCcccCC-CCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcc
Confidence 35688999999999999987765 78999999999999999999999999999999999999999999975 89999999
Q ss_pred ccceEeeeC-----CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecC
Q psy10612 99 ENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 173 (426)
Q Consensus 99 ~e~y~~~d~-----~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~ 173 (426)
++||++++. +++++||||+|++++.++++++.||++||+|+||+++|||+|.++ +||+|+|||+|.|+|+|+.
T Consensus 89 ~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~--rgl~R~rEF~~~E~h~~~~ 166 (477)
T PRK08661 89 PEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKT--RPFLRTREFLWQEGHTAHA 166 (477)
T ss_pred cccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCC--CCcceeeeEEEcceeeeeC
Confidence 999999875 368999999999999999999999999999999999999999984 5999999999999998766
Q ss_pred cc-chHHHHHHHHHHHHHHH-HHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccce
Q psy10612 174 VE-QIGDEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDI 251 (426)
Q Consensus 174 ~~-~~~~e~~~~~~~~~~il-~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~ 251 (426)
+. +++.++..+++.+.+++ +.|||++.+.......++.|. ..+..++.
T Consensus 167 ~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga------------------------------~~~~~ie~ 216 (477)
T PRK08661 167 TEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGA------------------------------DYTYTIEA 216 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEecChHHhhCCC------------------------------cceeEEEE
Confidence 65 89999999999999999 999999755432110111111 11222344
Q ss_pred eeecccCCceeeeeee-eeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCceEE
Q psy10612 252 TITDALKRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPRQGI 326 (426)
Q Consensus 252 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V~ 326 (426)
.+.| ++.+++++++ ++..++.+||++|.+.+|... .++ .+++|..+|++++|+|++ |+.||+++||+||+
T Consensus 217 ~~~d--gr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~-~v~--~~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~ 291 (477)
T PRK08661 217 MMPD--GKALQAGTSHYLGQNFAKAFDIKFQDKDGKLE-YVH--QTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVV 291 (477)
T ss_pred EeCC--CCEEEEEEecccccchhHhcCCEEECCCCCEe-eeE--EecccHHHHHHHHHHHHhCccCCCccCcccCCCeEE
Confidence 4444 6778888874 788889999999998877643 333 345663499999999976 57899999999999
Q ss_pred EEeC------CCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCee
Q psy10612 327 VIPV------AEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVH 400 (426)
Q Consensus 327 Vi~~------~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q 400 (426)
|+|+ +++..++|.+|++.||++|++|++|+|++.++|+||++|++.|+|++|+||++|+++|+|+|++|+++++
T Consensus 292 Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek 371 (477)
T PRK08661 292 IVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEK 371 (477)
T ss_pred EEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCce
Confidence 9999 4567889999999999999999999855789999999999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHhhcc
Q psy10612 401 GEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 401 ~~v~~~el~~~i~~~~~~~~ 420 (426)
..++++++++.+.+.++..+
T Consensus 372 ~~v~~~el~~~l~~~l~~~~ 391 (477)
T PRK08661 372 ETVPLDELVEKVPELLEEIQ 391 (477)
T ss_pred EEEEHHHHHHHHHHHHHHHH
Confidence 99999999999888776544
No 16
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-59 Score=469.02 Aligned_cols=359 Identities=19% Similarity=0.264 Sum_probs=278.1
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcc--cccccccceEeeeC-CceEEEcCCCc
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGH--WAHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~--~~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
+.++||+||+|.++..|++|++.+++++++|||.+|.||+||++++|.++.+ .+.+.++||.|+|+ |+.++||||.|
T Consensus 5 ~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~T 84 (429)
T COG0124 5 QRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELT 84 (429)
T ss_pred cCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCc
Confidence 3589999999999999999999999999999999999999999999997433 34478999999998 99999999999
Q ss_pred HHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC
Q psy10612 119 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 119 ~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi 197 (426)
+|++|+++.+.... ++|+|+||+|+|||||+||+ ||+|||+|+|+|+||.++ .+|+|+++++ .++|++|||
T Consensus 85 apv~R~~~en~~~~-~~p~k~yy~g~vfRyErPQ~----GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~---~~~l~~lGi 156 (429)
T COG0124 85 APVARAVAENKLDL-PKPLKLYYFGPVFRYERPQK----GRYRQFYQFGVEVIGSDSPDADAEVIALA---VEILEALGI 156 (429)
T ss_pred HHHHHHHHhccccc-cCCeeEEEecceecCCCCCC----CCceeeEEcCeEEeCCCCcccCHHHHHHH---HHHHHHcCC
Confidence 99999999775543 47999999999999999999 999999999999999999 9999998775 999999999
Q ss_pred e-EEEEEecCCCccCCCchhHHHH-----HHHHHHhhccCC----C--------CceeC---------CCCCccc--cCc
Q psy10612 198 T-FNLRLSTRPEKYLGELEVWNKA-----EKQLEASLNSFG----E--------PWTEN---------PGDGAFY--GPK 248 (426)
Q Consensus 198 ~-~~i~~~~~~~~~~G~~~~~~~~-----~~~l~~~l~~~~----~--------~~~~~---------~~~~~~~--~p~ 248 (426)
. |++.+||+. +.+.+-.+ .+.|.+++++.. . ....+ +..+..+ +|.
T Consensus 157 ~~~~l~iN~~g-----~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~ 231 (429)
T COG0124 157 GGFTLEINSRG-----ILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPE 231 (429)
T ss_pred CcEEEEEcCcc-----cHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHH
Confidence 7 999997753 33322222 333333333211 0 00001 0001110 222
Q ss_pred cceeeecccCCceeeeeeee-eecCCeEEeEEEeCCCCccccCEE--Ee------ccc--------------------cc
Q psy10612 249 IDITITDALKRPHQCATIQL-DFQLPIRFNLAYVNEKGEKNRPVM--IH------RAI--------------------LG 299 (426)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~y~~~v~--~~------~~~--------------------~G 299 (426)
+..++.++...++....-.+ ++..+..+|++++||++|||++|+ +. .++ +|
T Consensus 232 i~~~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavG 311 (429)
T COG0124 232 LLDYLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVG 311 (429)
T ss_pred hhhhccHHHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCcee
Confidence 21111111111111000001 244567789999999999999984 11 011 11
Q ss_pred ---chHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcE
Q psy10612 300 ---SVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNF 376 (426)
Q Consensus 300 ---gleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~ 376 (426)
|+|||+.+|.+. +...| ..++.+|+|+++++....+|.+++++||++|++++++. ..+++++||++|++.|+++
T Consensus 312 FaiGveRl~~~l~~~-~~~~~-~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~-~~r~~k~q~k~A~~~g~~~ 388 (429)
T COG0124 312 FAIGVERLILALEEE-GKEDP-VETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDY-SGRKLKKQFKYADKLGARF 388 (429)
T ss_pred EehHHHHHHHHHHHc-CCCCC-cCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEe-ccccHHHHHHHHHHCCCCE
Confidence 699999998664 43222 23678999999999888999999999999999999999 5788999999999999999
Q ss_pred EEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 377 IMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 377 ~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
+||+|++|+++|+|+|||+.|++|..++++++++.++...
T Consensus 389 ~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 389 AVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred EEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999887653
No 17
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=8.6e-58 Score=443.86 Aligned_cols=296 Identities=61% Similarity=1.117 Sum_probs=282.2
Q ss_pred hHHHHHHhcCCcccc-cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee
Q psy10612 27 WNRKIGREQELFFFH-ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 105 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~-~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~ 105 (426)
+|++|++++++|++. ..++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.++||++.+.++||++.
T Consensus 1 dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~ 80 (298)
T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE 80 (298)
T ss_pred ChhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec
Confidence 699999999999775 4689999999999999999999999999999999999999999999999999999999999997
Q ss_pred eCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHH
Q psy10612 106 VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL 185 (426)
Q Consensus 106 d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~ 185 (426)
+.++.++||||+|+++++++++...++++||+|++|+|+|||+|.++.++||+|+|||+|.|+|+||.++++++|+..++
T Consensus 81 ~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l 160 (298)
T cd00771 81 EEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVL 160 (298)
T ss_pred cCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHH
Confidence 77889999999999999999998889999999999999999999987679999999999999999999888899988888
Q ss_pred HHHHHHHHHcCCe-EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceeee
Q psy10612 186 DFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 264 (426)
Q Consensus 186 ~~~~~il~~lgi~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 264 (426)
+++.++++.||++ +.+.+++++.++.|+.+.|..++..+++.++..+.++...+|+++|||||+|+.+.|++|+.|+|+
T Consensus 161 ~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~ 240 (298)
T cd00771 161 DLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCS 240 (298)
T ss_pred HHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecc
Confidence 9999999999997 899999998888999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCC
Q psy10612 265 TIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISP 322 (426)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap 322 (426)
|+++|++++.+||++|++.+|....||++|++++|++||++++|+|++++.||.|+||
T Consensus 241 t~qld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g~~P~wlaP 298 (298)
T cd00771 241 TIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP 298 (298)
T ss_pred eeEeeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhhCCCCCCccCc
Confidence 9999999999999999999988788999999999999999999999999999999998
No 18
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-51 Score=420.42 Aligned_cols=354 Identities=21% Similarity=0.326 Sum_probs=290.8
Q ss_pred hHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHH--cCCeEeecccccchhhHhHhccccccccc
Q psy10612 27 WNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRK--RGFQEVVSPNVYNVKLWQTSGHWAHYSEN 100 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~--~G~~~i~tP~l~~~~l~~~sg~~~~~~~e 100 (426)
.-.++++++|+|+... ..+|+|||+|.|+.++++|+++|++.+.. .||.+|.||++.+.+||..||||+.|.+.
T Consensus 6 ~~~~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~ 85 (456)
T PRK04173 6 KIVSLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDP 85 (456)
T ss_pred HHHHHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCc
Confidence 4467899999877652 36999999999999999999999999977 89999999999999999999999999999
Q ss_pred ceEee--------e-------------------------C-------C------------------------ceEEEcCC
Q psy10612 101 MFSFD--------V-------------------------E-------N------------------------ETYALKPM 116 (426)
Q Consensus 101 ~y~~~--------d-------------------------~-------~------------------------~~~~LrP~ 116 (426)
||.+. | . + ..++|||+
T Consensus 86 m~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpe 165 (456)
T PRK04173 86 LVECKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPE 165 (456)
T ss_pred eeEeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccc
Confidence 99874 0 0 1 24679999
Q ss_pred CcHHHHHHHhhhhcCcC-CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHc
Q psy10612 117 NCPGHCLIFDHRVRSWR-ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 195 (426)
Q Consensus 117 ~t~~i~~~~~~~~~~~~-~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~l 195 (426)
+++.+.-.|++...||+ +||++++|+|+|||+|.++ +.||.|+|||+|.|+|+|+.++++.+|+..+++++.+++..|
T Consensus 166 taqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~-~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~l 244 (456)
T PRK04173 166 TAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITP-RNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDL 244 (456)
T ss_pred cchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCC-CCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999 9999999999999999998 799999999999999999999999999999999999999999
Q ss_pred CCe-EEEEEecCC--CccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceeeeeeeeeecC
Q psy10612 196 GFT-FNLRLSTRP--EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQL 272 (426)
Q Consensus 196 gi~-~~i~~~~~~--~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (426)
|++ +.+.++.++ ..+.|..++|+.. .+...|..+....+. ..+.++.+
T Consensus 245 G~~~~~~~~s~~~~~e~~~ys~~~wd~e------~~~~~g~~~~e~~g~-----------------------~~~~dydL 295 (456)
T PRK04173 245 GIDPENLRFREHLPEELAHYSKATWDIE------YKFPFGRFWGELEGI-----------------------ANRTDYDL 295 (456)
T ss_pred CCCccceEEEecCcchhhccHHHHHhHH------HhCCCCCcEEEEeee-----------------------eccchhhc
Confidence 997 778887763 2355666777641 111111111110000 00112222
Q ss_pred C-----eEEeEEEe--CCCCccccCEEEecccccchHHHHHHHHH-hcCC------------CCCCCCCCceEEEEeCCC
Q psy10612 273 P-----IRFNLAYV--NEKGEKNRPVMIHRAILGSVERMVAILTE-SYAG------------KWPFWISPRQGIVIPVAE 332 (426)
Q Consensus 273 ~-----~~~~~~~~--~~~~~y~~~v~~~~~~~GgleRll~~l~e-~~g~------------~~p~~~ap~~V~Vi~~~~ 332 (426)
+ .+++++|+ ..+|....|++++.+ +| +||++.++++ .++. .||+|++|++|+|+|+++
T Consensus 296 ~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~s-iG-ieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~ 373 (456)
T PRK04173 296 SRHSKHSGEDLSYFDDETTGEKYIPYVIEPS-AG-LDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVK 373 (456)
T ss_pred ccchhhcCCCeEEEecCCCCceeeeEEEEec-cc-HHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecC
Confidence 2 35788888 334555678888877 67 9997666654 4322 799999999999999987
Q ss_pred --ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHH
Q psy10612 333 --PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVIT 410 (426)
Q Consensus 333 --~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~ 410 (426)
+..++|.+|++.||++ ++|++|+ + .++|+|+++|++.|+||+||||++|+++|+|+||++++++|..++++++++
T Consensus 374 ~~e~~~~A~~la~~LR~~-irVelD~-~-~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~ 450 (456)
T PRK04173 374 KEKLSEKAREIYAELRKD-FNVDYDD-S-GSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKD 450 (456)
T ss_pred cHHHHHHHHHHHHHHHhc-CEEEEeC-C-CCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHH
Confidence 3778999999999999 9999996 3 599999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q psy10612 411 RFGKL 415 (426)
Q Consensus 411 ~i~~~ 415 (426)
.++++
T Consensus 451 ~l~~~ 455 (456)
T PRK04173 451 YLAEK 455 (456)
T ss_pred HHHhh
Confidence 88654
No 19
>KOG2324|consensus
Probab=100.00 E-value=7.8e-51 Score=381.55 Aligned_cols=372 Identities=20% Similarity=0.283 Sum_probs=284.8
Q ss_pred hHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee
Q psy10612 27 WNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV 106 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d 106 (426)
..++|+.+.| ++++..+|+|.|+|.|.+..+++.+.++..|+..|.+.|.+|++.++++|+++|+|+..++|||++.|
T Consensus 26 ~aq~LL~e~G--fI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~D 103 (457)
T KOG2324|consen 26 TAQELLQEVG--FIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHD 103 (457)
T ss_pred HHHHHHHHhC--ccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeec
Confidence 3455555557 57778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CceEEEcCCCcHHHHHHHhhhhc-CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHH
Q psy10612 107 E-NETYALKPMNCPGHCLIFDHRVR-SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVG 183 (426)
Q Consensus 107 ~-~~~~~LrP~~t~~i~~~~~~~~~-~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~ 183 (426)
+ |+.+||.||+++.++++.++... ||+|||+++||||++||+|.++ |+||+|.|||+|.|+|+|..++ .|.+.+..
T Consensus 104 r~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrp-RfGLlRgREFlMKDmYsFd~~~etA~qTy~~ 182 (457)
T KOG2324|consen 104 RKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRP-RFGLLRGREFLMKDMYSFDSDEETAQQTYQL 182 (457)
T ss_pred cCCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCc-cccchhhHHHHHhhhhcccCCHHHHHHHHHH
Confidence 9 99999999999999999998765 9999999999999999999999 7999999999999999999988 78899999
Q ss_pred HHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCcee-CCCCC------ccccCccceeeecc
Q psy10612 184 ALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTE-NPGDG------AFYGPKIDITITDA 256 (426)
Q Consensus 184 ~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~------~~~~p~~~~~~~~~ 256 (426)
+.++|.++|+.||+||.-+-++. +.+|..-+.+ -. +....|++... .+... .+-.|++. .+..
T Consensus 183 v~~aY~~iFkqL~~pfVkv~Ads--G~iGG~vShE---fh---l~~~vgED~l~~C~~C~~s~n~e~~~~sk~~--~Cp~ 252 (457)
T KOG2324|consen 183 VDQAYDRIFKQLGLPFVKVWADS--GDIGGEVSHE---FH---LIHPVGEDTLMSCPSCGYSKNSEDLDLSKIA--SCPK 252 (457)
T ss_pred HHHHHHHHHHHcCCCeEEEeecc--cccCceeeee---Ee---ccCccCccceeecCcCCccCchhhhcCCccc--cCCc
Confidence 99999999999999965444332 4455432100 00 00111111110 00000 00011110 0111
Q ss_pred cCC-cee---eeeeeeeecCCeE----EeEEEeCCCCccccCEEEecccccchHHHHHHHHHh----cCCCCCCCCCCce
Q psy10612 257 LKR-PHQ---CATIQLDFQLPIR----FNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTES----YAGKWPFWISPRQ 324 (426)
Q Consensus 257 ~~~-~~~---~~~~~l~~~~~~~----~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~----~g~~~p~~~ap~~ 324 (426)
+.. ... ...+.+.|.+|++ +|++|++-.|.-+ .+.|+|+++| ++||+++.+|. ++++||..+||++
T Consensus 253 C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe-~l~MgCyGIG-VtRllaAa~evls~~~~lrwP~~iAPy~ 330 (457)
T KOG2324|consen 253 CNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPE-FLHMGCYGIG-VTRLLAAAAEVLSDDKGLRWPSLIAPYK 330 (457)
T ss_pred ccCCCcccccceEEEEEEEeccccccccCceeeeecCCcc-eEEecceecc-HHHHHHHHHHHhccccccccccccCcce
Confidence 111 111 1234456666654 5889887777643 5689999998 99999999885 4899999999999
Q ss_pred EEEEeCC-CChHHHHHHHHHHHHHC------CCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEe-cCccCCCeEEEEEcc
Q psy10612 325 GIVIPVA-EPFNEYADQVKNKIFAA------GFMCDADLDSSDTLNKKIRNAQISQYNFIMVVG-EKEKSSNTVNVRTRD 396 (426)
Q Consensus 325 V~Vi~~~-~~~~~~a~~ia~~Lr~~------Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG-~~E~~~~~v~vk~~~ 396 (426)
|++++.+ ....+.+.+++.+|-.. --.+..|++....+|+|+++|+++|+|++|||| ..-..+..++|+...
T Consensus 331 vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~ 410 (457)
T KOG2324|consen 331 VCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIR 410 (457)
T ss_pred eEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEee
Confidence 9655554 45566677777766432 235678886667899999999999999999999 666678899999999
Q ss_pred CCeeeeecHHHHHHHHH
Q psy10612 397 NIVHGEFSVDDVITRFG 413 (426)
Q Consensus 397 ~~~q~~v~~~el~~~i~ 413 (426)
+|+..++..+.+.+.+.
T Consensus 411 ~ge~~~l~~~~~~~l~~ 427 (457)
T KOG2324|consen 411 WGESAELDKDGFMKLLS 427 (457)
T ss_pred cCceeccchhhHHHHhh
Confidence 99988887777665543
No 20
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=7.4e-50 Score=406.72 Aligned_cols=359 Identities=16% Similarity=0.210 Sum_probs=266.6
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-c-ccccccccceEeeeC-CceEEEcCCCc
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-G-HWAHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g-~~~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
+.++|++||+|.++..++.|++.+++.++++||++|.||+||+.++|.++ | +++.+.++||+|.|. |+.++||||.|
T Consensus 5 ~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T 84 (430)
T CHL00201 5 QAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGT 84 (430)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCc
Confidence 46899999999999999999999999999999999999999999999875 5 667778999999988 78999999999
Q ss_pred HHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC
Q psy10612 119 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 119 ~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi 197 (426)
+|++|+++.+..++..+|+|+||+|+|||+|+||+ ||+|||+|+|+|+||.++ .+|+|++.++ .++|+.||+
T Consensus 85 ~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~----GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~---~~~l~~lGl 157 (430)
T CHL00201 85 AGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQS----GRQRQFHQLGIEFIGSIDARADTEVIHLA---MQIFNELQV 157 (430)
T ss_pred HHHHHHHHHccccccCCCeEEEEEcceecCCCCcC----CccceeEEeceEEECCCChhhHHHHHHHH---HHHHHHcCC
Confidence 99999987765566678999999999999999998 999999999999999998 8999997665 999999999
Q ss_pred e-EEEEEecCCCccCCCchhHHHHHHHHHHhhccC----C---------CCcee----CCCCCccc--cCccceeeeccc
Q psy10612 198 T-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSF----G---------EPWTE----NPGDGAFY--GPKIDITITDAL 257 (426)
Q Consensus 198 ~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~----~---------~~~~~----~~~~~~~~--~p~~~~~~~~~~ 257 (426)
+ +.+.++++ |....+......+..++... . ..... ........ ++.+...+....
T Consensus 158 ~~~~i~l~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~ 232 (430)
T CHL00201 158 KNLILDINSI-----GKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLES 232 (430)
T ss_pred CceEEEECCC-----CchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHH
Confidence 7 99999775 22111211111111111110 0 00000 00000000 111100000000
Q ss_pred CCcee-e-eeeeeeecCCeEEeEEEeCCCCccccCEE--Ee-c-------------------------cccc---chHHH
Q psy10612 258 KRPHQ-C-ATIQLDFQLPIRFNLAYVNEKGEKNRPVM--IH-R-------------------------AILG---SVERM 304 (426)
Q Consensus 258 ~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~y~~~v~--~~-~-------------------------~~~G---gleRl 304 (426)
...+. . ..+. .+.+...+|++.+++.+|||++++ .. . ..+| |+|||
T Consensus 233 ~~~l~~~~~~l~-~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~PavGfa~g~erl 311 (430)
T CHL00201 233 TEHFYDVCTYLN-LLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIGLERL 311 (430)
T ss_pred HHHHHHHHHHHH-HcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCeeEEEecHHHH
Confidence 00010 0 0000 111234566667777777776663 10 0 0111 69999
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCc
Q psy10612 305 VAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKE 384 (426)
Q Consensus 305 l~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E 384 (426)
+.+|.+. ...| ..|.+|+|++++++...+|.+++++||++|++|++|. ...++++++++|++.|+|+++|+|++|
T Consensus 312 ~~~l~~~--~~~~--~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~-~~~~l~k~~k~A~~~~~~~viiiG~~E 386 (430)
T CHL00201 312 LLIAKDN--IILP--KQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDL-SSSNFHKQIKQAGKKRAKACIILGDNE 386 (430)
T ss_pred HHHHhcc--ccCC--CCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEee-CCCCHHHHHHHHHHcCCCEEEEEechH
Confidence 9977542 2233 2567899999988888999999999999999999998 478999999999999999999999999
Q ss_pred cCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhh
Q psy10612 385 KSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKEN 418 (426)
Q Consensus 385 ~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~ 418 (426)
.++|+|+||++.+++|.+++++++++.+.++.+.
T Consensus 387 ~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~~ 420 (430)
T CHL00201 387 IMDNCITIKWLDEQVQENAQYSNFKQEISYLKKK 420 (430)
T ss_pred HhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888766543
No 21
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-50 Score=406.63 Aligned_cols=386 Identities=21% Similarity=0.331 Sum_probs=305.5
Q ss_pred CCCCCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccc
Q psy10612 18 RMMPISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHY 97 (426)
Q Consensus 18 ~~~~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~ 97 (426)
+..+-++..|+.+|+.+.|+ +++..+|+|.|+|.|.+++++|+++++++|.+.|.+++.+|+|.|.++|+.||||+.|
T Consensus 12 ~~~p~da~~~sh~ll~rAg~--i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f 89 (500)
T COG0442 12 KEKPADASEWSHQLLLRAGM--IRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGF 89 (500)
T ss_pred cCCcchhHHHHHHHHHhcCc--eecccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhc
Confidence 34567788999999999995 6668999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-
Q psy10612 98 SENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE- 175 (426)
Q Consensus 98 ~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~- 175 (426)
++|||+++|+ +++++||||+|..++.++++++.||+|||+++|||+++||+|.++ |+||+|.|||+|.|+|+|+.+.
T Consensus 90 ~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rp-r~gllR~REF~mkdaySfh~~~e 168 (500)
T COG0442 90 GPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRP-RFGLLRGREFLMKDAYSFHADEE 168 (500)
T ss_pred chhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccC-CCCccchheeeecccccccCCHH
Confidence 9999999999 889999999999999999999999999999999999999999999 7999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhH-----------------HHHHHHHHHhh-ccC----C-
Q psy10612 176 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVW-----------------NKAEKQLEASL-NSF----G- 232 (426)
Q Consensus 176 ~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~-----------------~~~~~~l~~~l-~~~----~- 232 (426)
+++.++..+.++|.+||.++|+.+..+.++. +++|...++ ..+-.-+.... +.. .
T Consensus 169 ~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~--g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~ 246 (500)
T COG0442 169 DAEETYEKMLDAYSRIFLRLPLIFGPVPADE--GFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEE 246 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeecccC--CCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCcccccc
Confidence 8999999999999999999988876665443 455443210 00000111111 100 0
Q ss_pred CCce------------------eCCC-CCccccCcc--c--ee-eec----c--------cC------------------
Q psy10612 233 EPWT------------------ENPG-DGAFYGPKI--D--IT-ITD----A--------LK------------------ 258 (426)
Q Consensus 233 ~~~~------------------~~~~-~~~~~~p~~--~--~~-~~~----~--------~~------------------ 258 (426)
.+.. ...| +.++++|+. + +. +.+ + .+
T Consensus 247 ~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~ 326 (500)
T COG0442 247 GELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDD 326 (500)
T ss_pred ccceEecccceEEEeeeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccc
Confidence 0000 0011 223444431 0 00 000 0 00
Q ss_pred Cceee----------eeeeeeecCCeEE----eEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCC
Q psy10612 259 RPHQC----------ATIQLDFQLPIRF----NLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWI 320 (426)
Q Consensus 259 ~~~~~----------~~~~l~~~~~~~~----~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ 320 (426)
+...+ ..+.+.|.+|.++ ++++++.+|. ..+.+|+|+++| ++|++++++|++ |+.||..+
T Consensus 327 ~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~-~~~~~mg~ygig-vsr~v~a~ieq~~d~~gi~w~~a~ 404 (500)
T COG0442 327 RSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGK-EQPKTMGCYGIG-VSRLVAALLEQIHDENGIIWPKAI 404 (500)
T ss_pred cCCCCCCceeeeeeccccCEEEEECchhhhhCeeEEEecCCC-ccceEEEehhhh-hhhHHHHHHHHhcccccCcccccc
Confidence 00001 1123456677654 7888888876 347789999998 999999988873 78999889
Q ss_pred CCceEEEEeCCCC---hHHHHHHHHHHHHHCC-CeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEcc
Q psy10612 321 SPRQGIVIPVAEP---FNEYADQVKNKIFAAG-FMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRD 396 (426)
Q Consensus 321 ap~~V~Vi~~~~~---~~~~a~~ia~~Lr~~G-i~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~ 396 (426)
+|+++.|++++.. ....+.+++..|...| ..|++|+ ++.+.|.++.+|+.+|+|+.+++|++ .+.+.|++|++.
T Consensus 405 apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~dd-r~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~ 482 (500)
T COG0442 405 APFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDD-RDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRK 482 (500)
T ss_pred CcceeEEEEcCchhHHHHHHhhhHHHHHHhCCchhhhhhh-hccccCccccCCeEecccceeeeccc-ccCCceeEEecC
Confidence 9999999999863 3344567888899999 9999999 59999999999999999999999998 788999999999
Q ss_pred CCeeeeecHHHHHHHH
Q psy10612 397 NIVHGEFSVDDVITRF 412 (426)
Q Consensus 397 ~~~q~~v~~~el~~~i 412 (426)
+|+...++...+++.+
T Consensus 483 ~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 483 CGEKEAVTIEALFARL 498 (500)
T ss_pred CCchhhccHHHHHHHh
Confidence 9999999888877654
No 22
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=7.2e-49 Score=404.80 Aligned_cols=354 Identities=20% Similarity=0.268 Sum_probs=263.0
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPG 120 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~ 120 (426)
+.|+|++||+|.++.++++|++.++++|+++||++|.||+||+.++|.++.+ +...++||.|.|+ |+.++||||.|+|
T Consensus 71 ~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g-~~~~~~~y~f~D~~g~~l~LRpD~T~~ 149 (487)
T PLN02530 71 NPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAG-EEITDQLYNFEDKGGRRVALRPELTPS 149 (487)
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccC-cccccceEEEECCCCCEEecCCCCcHH
Confidence 4689999999999999999999999999999999999999999999987544 3467899999998 8899999999999
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe-
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 198 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~- 198 (426)
++|+++.+..+ .++|+|+||+|+|||+|++++ +|+|||+|+|+|+||.++ .+|+|++.++ .++|+.||++
T Consensus 150 iaR~~~~~~~~-~~~P~r~~y~g~vfR~e~~q~----gr~REf~Q~giEiiG~~~~~aDaEvi~l~---~~~l~~lgl~~ 221 (487)
T PLN02530 150 LARLVLQKGKS-LSLPLKWFAIGQCWRYERMTR----GRRREHYQWNMDIIGVPGVEAEAELLAAI---VTFFKRVGITS 221 (487)
T ss_pred HHHHHHhcccc-cCCCeEEEEEcCEEcCcCCCC----CCccceEEcCeeEeCCCCcchhHHHHHHH---HHHHHHcCCCC
Confidence 99999876543 368999999999999999998 999999999999999998 8999998775 8999999994
Q ss_pred --EEEEEecCCC-----ccCCCch-hHHH-----------HHHHHHHhhccCCCCceeCCCCCcccc-CccceeeecccC
Q psy10612 199 --FNLRLSTRPE-----KYLGELE-VWNK-----------AEKQLEASLNSFGEPWTENPGDGAFYG-PKIDITITDALK 258 (426)
Q Consensus 199 --~~i~~~~~~~-----~~~G~~~-~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~ 258 (426)
+.+.++|+.. ..+|.++ .+.. ..+.+.+.|...+.+.........+.. ..++ .+.+.++
T Consensus 222 ~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~-~l~~~~~ 300 (487)
T PLN02530 222 SDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLD-DLEALLG 300 (487)
T ss_pred CceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHH-HHHHHhh
Confidence 8999998631 1123221 1110 112222233222211110000000000 0000 0000000
Q ss_pred Cceee-eeee------eeecCC--eEEeEEEeCCCCccccCEEE--e-----cccc--------------------c---
Q psy10612 259 RPHQC-ATIQ------LDFQLP--IRFNLAYVNEKGEKNRPVMI--H-----RAIL--------------------G--- 299 (426)
Q Consensus 259 ~~~~~-~~~~------l~~~~~--~~~~~~~~~~~~~y~~~v~~--~-----~~~~--------------------G--- 299 (426)
....+ ..+. ..+.+. ..+|++.+++.+|||++|+- . .+++ |
T Consensus 301 ~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~pAvGFa~ 380 (487)
T PLN02530 301 ADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDTPACGFGF 380 (487)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCCCeeEEEE
Confidence 00000 0000 012222 45788888889999888841 0 0111 1
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEE
Q psy10612 300 SVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMV 379 (426)
Q Consensus 300 gleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~ii 379 (426)
|++|++.++.+ . ..+|.|.+|.+|+|++++++...+|.++++.||++|++|++|. ...++++++++|++.|+|++++
T Consensus 381 g~~~l~~~l~~-~-g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~-~~~~l~k~ik~A~k~g~~~ivi 457 (487)
T PLN02530 381 GDAVIVELLKE-K-GLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVL-EPKKLKWVFKHAERIGAKRLVL 457 (487)
T ss_pred hHHHHHHHHHh-c-CCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEec-CCCCHHHHHHHHHHCCCCEEEE
Confidence 47888776644 2 3467777889999999998888999999999999999999998 4788999999999999999999
Q ss_pred EecCccCCCeEEEEEccCCeeeeecHHHH
Q psy10612 380 VGEKEKSSNTVNVRTRDNIVHGEFSVDDV 408 (426)
Q Consensus 380 iG~~E~~~~~v~vk~~~~~~q~~v~~~el 408 (426)
+|++|.++|+|+||++.+++|..++++++
T Consensus 458 iG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 458 VGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred EchhHHhCCeEEEEECCCCcceEechHHc
Confidence 99999999999999999999999998764
No 23
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=3.7e-45 Score=383.19 Aligned_cols=360 Identities=15% Similarity=0.172 Sum_probs=259.2
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPG 120 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~ 120 (426)
+.|+|++||+|..+.++++|++.+++.|+++||.+|+||+||+.++|....+.+ .++||.|.|+ |+.++||||.|+|
T Consensus 328 k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged--~k~mY~f~D~gGr~LaLRPDlTvP 405 (763)
T PLN02972 328 KIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED--SKLIYDLADQGGELCSLRYDLTVP 405 (763)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc--hhheEEEECCCCCEEEeCCCChHH
Confidence 679999999999999999999999999999999999999999999998643323 3689999998 8999999999999
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc-c-chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-E-QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~-~-~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
++|+++.+. ..|+|+||+|+|||+|+|++ ||+|||+|+|+|+||.. . .+|+|++.++ .++|+.||++
T Consensus 406 iAR~vA~n~----~~p~KrYyiG~VFR~e~pqk----GR~REF~Q~G~EIIG~~~~~~aDAEVI~La---~E~L~~LGi~ 474 (763)
T PLN02972 406 FARYVAMNG----ITSFKRYQIAKVYRRDNPSK----GRYREFYQCDFDIAGVYEPMGPDFEIIKVL---TELLDELDIG 474 (763)
T ss_pred HHHHHHhCC----CCcceEEEeccEEecCCCCC----CCCccceEEeEEEEcCCCcchhhHHHHHHH---HHHHHhCCCC
Confidence 999998642 24899999999999999998 99999999999999974 4 5899998775 9999999996
Q ss_pred -EEEEEecCCC-----ccCCCchh-HHHH-----------HHHHHHhh-ccCCCCceeCCCCC---ccccCc---cce--
Q psy10612 199 -FNLRLSTRPE-----KYLGELEV-WNKA-----------EKQLEASL-NSFGEPWTENPGDG---AFYGPK---IDI-- 251 (426)
Q Consensus 199 -~~i~~~~~~~-----~~~G~~~~-~~~~-----------~~~l~~~l-~~~~~~~~~~~~~~---~~~~p~---~~~-- 251 (426)
|.+.+||+.. ..+|.+.. +... .+.+++.+ ...+.+-....... .+.|+. ++.
T Consensus 475 df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~ 554 (763)
T PLN02972 475 TYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLR 554 (763)
T ss_pred ceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999998741 22344321 1111 11111111 11111110000000 000110 000
Q ss_pred ----ee-ecc-cCCcee-eeee-e-e-eecC--CeEEeEEEeCCCCccccCEE--Ee-----cc----------------
Q psy10612 252 ----TI-TDA-LKRPHQ-CATI-Q-L-DFQL--PIRFNLAYVNEKGEKNRPVM--IH-----RA---------------- 296 (426)
Q Consensus 252 ----~~-~~~-~~~~~~-~~~~-~-l-~~~~--~~~~~~~~~~~~~~y~~~v~--~~-----~~---------------- 296 (426)
.+ .+. ...... ...+ . + .+.+ ...||++++++.+|||++++ .. .+
T Consensus 555 ~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~~FgG 634 (763)
T PLN02972 555 QEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVGMFSG 634 (763)
T ss_pred HhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHHHhcCC
Confidence 00 000 000000 0000 0 0 1222 24567777777777777773 10 00
Q ss_pred ----ccc---chHHHHHHHHHhcCCCCC--CCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHH
Q psy10612 297 ----ILG---SVERMVAILTESYAGKWP--FWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIR 367 (426)
Q Consensus 297 ----~~G---gleRll~~l~e~~g~~~p--~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~ 367 (426)
.+| |+|||+.+|.++ +...+ ....+.+|+|++.+++....+.+++++||++||+++++. ..+++++++
T Consensus 635 ~~vPAVGFSiGIERL~~~L~~~-~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~--~~kl~kq~~ 711 (763)
T PLN02972 635 KQVPAVGVSLGIERVFAIMEQQ-EEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKV--STRKAKHLK 711 (763)
T ss_pred CCCCEEEEEecHHHHHHHHHHc-ccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 011 599999887553 22111 112456899999988888899999999999999999876 568999999
Q ss_pred HHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHh
Q psy10612 368 NAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKE 417 (426)
Q Consensus 368 ~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~ 417 (426)
+|++.|+|+++|+|++|+++|+|+|||+.+++|..++++++++.+++.++
T Consensus 712 ~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 712 RAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred HHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999987765
No 24
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-44 Score=368.18 Aligned_cols=350 Identities=19% Similarity=0.287 Sum_probs=258.9
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-ccc-ccccccceEeeeC-CceEEEcCCCc
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHW-AHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g~~-~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
+.++|+++|+|.++.+++.+++.+++.|.++||++|.||+|++.++|..+ |++ +.+.++||+|.|+ |+.++||||.|
T Consensus 5 ~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T 84 (412)
T PRK00037 5 QAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGT 84 (412)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCc
Confidence 46899999999999999999999999999999999999999999999875 443 2347899999988 89999999999
Q ss_pred HHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC
Q psy10612 119 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 119 ~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi 197 (426)
+|++|++++.. .+|+|+||+|+|||+|.++. +|.|||+|+|+|+||.++ .+|+|++.+ +.++|+.||+
T Consensus 85 ~~~ar~~~~~~----~~p~r~~~~g~vfR~e~~~~----gr~ref~Q~g~ei~g~~~~~~d~E~i~~---~~~~l~~lg~ 153 (412)
T PRK00037 85 APVVRAVIEHK----LQPFKLYYIGPMFRYERPQK----GRYRQFHQFGVEVIGSDSPLADAEVIAL---AADILKALGL 153 (412)
T ss_pred HHHHHHHHhCC----CCCeEEEEEcCccccCCCCC----CcccceEEcCeeeeCCCCcchhHHHHHH---HHHHHHHcCC
Confidence 99999987642 28999999999999998886 899999999999999988 799998766 4899999999
Q ss_pred e-EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCc--------------ee----CCCCCccc--cCccceeeecc
Q psy10612 198 T-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW--------------TE----NPGDGAFY--GPKIDITITDA 256 (426)
Q Consensus 198 ~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~--------------~~----~~~~~~~~--~p~~~~~~~~~ 256 (426)
+ +.+.+++. |.-..+....+.+..++.. +.+- .. ..+..... ++++...+.+.
T Consensus 154 ~~~~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (412)
T PRK00037 154 KGLKLLINSL-----GDFEIRANYRKALVGFLEK-GLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEE 227 (412)
T ss_pred CceeeeeccC-----CCHHHhHHHHHHHHHHHHh-CchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHH
Confidence 7 77877553 3222222222233333322 1000 00 00000000 00000000000
Q ss_pred cCCceeee-eeeeeecCCeEEeEEEeCCCCccccCEE---E---ec----------------------cccc---chHHH
Q psy10612 257 LKRPHQCA-TIQLDFQLPIRFNLAYVNEKGEKNRPVM---I---HR----------------------AILG---SVERM 304 (426)
Q Consensus 257 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~y~~~v~---~---~~----------------------~~~G---gleRl 304 (426)
..+.+... .+--.+.+...+|+..+++.+||||+++ . +. ..+| |+|||
T Consensus 228 ~~~~l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfs~~le~l 307 (412)
T PRK00037 228 SKEHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVGFAIGVERL 307 (412)
T ss_pred HHHHHHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceEEEEEcHHHH
Confidence 00000000 0000122234566666666777776663 1 00 0112 69999
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCc
Q psy10612 305 VAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKE 384 (426)
Q Consensus 305 l~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E 384 (426)
+.++.++.. +|.+|+|+|++++...+|.++++.||++|++|++|. ...++++++++|++.|+|++++||++|
T Consensus 308 ~~~l~~~~~-------~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~-~~~~~~~~~~~a~~~gi~~~viig~~e 379 (412)
T PRK00037 308 LLLLEELGE-------EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDY-GGRKLKKQFKYADKSGARFVLILGEDE 379 (412)
T ss_pred HHHHHhcCC-------CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeC-CCCCHHHHHHHHHHcCCCEEEEEChhH
Confidence 998877521 688999999987777889999999999999999988 467999999999999999999999999
Q ss_pred cCCCeEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 385 KSSNTVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 385 ~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
.++|+|+||++.++++..++++++++.|++.+
T Consensus 380 ~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 380 LANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred HhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 99999999999999999999999999998764
No 25
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-43 Score=361.39 Aligned_cols=350 Identities=13% Similarity=0.166 Sum_probs=252.8
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-cccccccccceEeeeC-CceEEEcCCCcH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCP 119 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g~~~~~~~e~y~~~d~-~~~~~LrP~~t~ 119 (426)
+.|+|++||+|.++.++++|++.+++.|+++||.+|.||+|++.++|... |..+...++||+|.|+ |+.++||||.|+
T Consensus 5 ~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~ 84 (423)
T PRK12420 5 RNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTI 84 (423)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccH
Confidence 46899999999999999999999999999999999999999999999753 5445667899999998 889999999999
Q ss_pred HHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 120 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 120 ~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
|++|+++.+. ..++|+|+||+|+|||+|.++. +|.|||+|+|+|+||.++ .+|+|++.++ .++++.||++
T Consensus 85 ~iaR~va~~~--~~~~p~r~~y~g~vfR~~~~~~----gr~rE~~Q~g~EiiG~~~~~adaEvi~la---~~~l~~lg~~ 155 (423)
T PRK12420 85 PFAKVVAMNP--NIRLPFKRYEIGKVFRDGPIKQ----GRFREFIQCDVDIVGVESVMAEAELMSMA---FELFRRLNLE 155 (423)
T ss_pred HHHHHHHhCc--CCCCCeeEEEEcceECCCCCCC----CccceeEECCeeeECCCCCcccHHHHHHH---HHHHHHCCCC
Confidence 9999998752 2467999999999999999987 899999999999999988 8999998775 8999999999
Q ss_pred EEEEEecCC-----CccCCCchhHHH------------HHHHHHHhhccCCCCceeCCCCCcc--c-cC-ccce---eee
Q psy10612 199 FNLRLSTRP-----EKYLGELEVWNK------------AEKQLEASLNSFGEPWTENPGDGAF--Y-GP-KIDI---TIT 254 (426)
Q Consensus 199 ~~i~~~~~~-----~~~~G~~~~~~~------------~~~~l~~~l~~~~~~~~~~~~~~~~--~-~p-~~~~---~~~ 254 (426)
+.+.+||+. -..+|.+..+.. ..+.+.+.|...+.+.........+ . ++ .++. .+.
T Consensus 156 ~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 235 (423)
T PRK12420 156 VTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEAFN 235 (423)
T ss_pred EEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHhcc
Confidence 999999863 112333321100 0111222222211111000000000 0 00 0000 000
Q ss_pred cc-cCC---cee-eeeeeeeecC--CeEEeEEEeCCCCccccCEEE----e---------------------c-----cc
Q psy10612 255 DA-LKR---PHQ-CATIQLDFQL--PIRFNLAYVNEKGEKNRPVMI----H---------------------R-----AI 297 (426)
Q Consensus 255 ~~-~~~---~~~-~~~~~l~~~~--~~~~~~~~~~~~~~y~~~v~~----~---------------------~-----~~ 297 (426)
+. ... .+. ....--.+.+ ...+|+..+++.+||||.|+- + . ..
T Consensus 236 ~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~pA 315 (423)
T PRK12420 236 NPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYPT 315 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCCc
Confidence 00 000 000 0000001111 134677777777777777631 0 0 01
Q ss_pred cc---chHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHH-CCCeEEEcCCCCCCHHHHHHHHHHhC
Q psy10612 298 LG---SVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFA-AGFMCDADLDSSDTLNKKIRNAQISQ 373 (426)
Q Consensus 298 ~G---gleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~-~Gi~v~~d~~~~~~lgkk~~~A~~~g 373 (426)
+| |+|||+.++... + ++. .|.+|+|+|+++. ..|.+++++||+ +|++|++|. ...++++++++|++.|
T Consensus 316 vGfa~~~~~l~~~l~~~-~--~~~--~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~-~~~~l~~~i~~A~~~g 387 (423)
T PRK12420 316 VGISFGLDVIYTALSQK-E--TIS--STADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELEL-AGRKLKKALNYANKEN 387 (423)
T ss_pred eeEEEcHHHHHHHHHhc-C--CCC--CCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEec-CCcCHHHHHHHHHHcC
Confidence 12 599999877543 1 222 5789999998653 469999999999 999999999 5889999999999999
Q ss_pred CcEEEEEecCccCCCeEEEEEccCCeeeeecHHHH
Q psy10612 374 YNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDV 408 (426)
Q Consensus 374 ip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el 408 (426)
+|+++++|++|.++|+|+||++.++++..++++++
T Consensus 388 ~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 388 IPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred CCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 99999999999999999999999999999998875
No 26
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=1.1e-41 Score=344.83 Aligned_cols=339 Identities=19% Similarity=0.251 Sum_probs=248.4
Q ss_pred CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcc--cccccccceEeeeC-CceEEEcCCCcH
Q psy10612 43 LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGH--WAHYSENMFSFDVE-NETYALKPMNCP 119 (426)
Q Consensus 43 ~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~--~~~~~~e~y~~~d~-~~~~~LrP~~t~ 119 (426)
.|+|++||+|.++.++++|++.+++.|.++||++|.||+|++.++|.++++ .+.+.++||+|.|. |+.++||||.|+
T Consensus 2 ~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~ 81 (397)
T TIGR00442 2 APRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTA 81 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcH
Confidence 589999999999999999999999999999999999999999999987542 33467899999986 899999999999
Q ss_pred HHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 120 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 120 ~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
|++|+++... +..++|+|+||+|+|||+|.++. +|.|||+|+|+|+||.++ .+|+|++.++ .++|+.+|++
T Consensus 82 ~iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~----gr~ref~Q~g~eiig~~~~~~d~E~i~l~---~e~l~~lg~~ 153 (397)
T TIGR00442 82 PVARAVIENK-LLLPKPFKLYYIGPMFRYERPQK----GRYRQFHQFGVEVIGSDSPLADAEIIALA---AEILKELGIK 153 (397)
T ss_pred HHHHHHHhcc-cccCCCeEEEEEcCeecCCCCCC----CcccceEEcCeeeeCCCCHHHHHHHHHHH---HHHHHHcCCC
Confidence 9999998653 34578999999999999998886 899999999999999988 7888887664 9999999997
Q ss_pred -EEEEEecCCCccCCCchhHHHHHHHHHHhhccC----CCC----ce-----eCCC----CCccc--cCccceeeecccC
Q psy10612 199 -FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSF----GEP----WT-----ENPG----DGAFY--GPKIDITITDALK 258 (426)
Q Consensus 199 -~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~----~~~----~~-----~~~~----~~~~~--~p~~~~~~~~~~~ 258 (426)
+.+.++|+. .+ +.+-...+.+..++++. +.. +. ..+. ...+. +|++...+.....
T Consensus 154 ~~~i~i~~~~--i~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (397)
T TIGR00442 154 DFTLEINSLG--IL---EGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESR 228 (397)
T ss_pred ceEEEecCcc--cH---HHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHH
Confidence 999998863 11 11111122222222220 000 00 0000 00000 1110000000000
Q ss_pred Ccee--eeeeeeeecCCeEEeEEEeCCCCccccCEE---E---e--c--------------------cccc---chHHHH
Q psy10612 259 RPHQ--CATIQLDFQLPIRFNLAYVNEKGEKNRPVM---I---H--R--------------------AILG---SVERMV 305 (426)
Q Consensus 259 ~~~~--~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~---~---~--~--------------------~~~G---gleRll 305 (426)
.++. +..+ ..+.+...||++.+++.+||||+++ . + . ..+| ++|||+
T Consensus 229 ~~l~~l~~~l-~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfs~~~~~l~ 307 (397)
T TIGR00442 229 AHFEELKELL-DALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVGFAIGIERLL 307 (397)
T ss_pred HHHHHHHHHH-HHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEEeeecHHHHH
Confidence 0000 0000 0123335567777777777777663 1 0 0 0112 599999
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCcc
Q psy10612 306 AILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEK 385 (426)
Q Consensus 306 ~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~ 385 (426)
.++.+. ..+|.+.+|.+|+|++.+++...++.+++..||++|++|++++ ...++++++++|++.|+|++++||++|.
T Consensus 308 ~~l~~~--~~~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~-~~~~l~k~~~~a~~~g~~~~i~ig~~e~ 384 (397)
T TIGR00442 308 LLLEEL--GLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDL-GGRKLKKQLKYADKLGARFAVILGEDEL 384 (397)
T ss_pred HHHHhc--CCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeC-CCCCHHHHHHHHHHcCCCEEEEEChhHH
Confidence 988663 3455556788999999888888889999999999999999998 4789999999999999999999999999
Q ss_pred CCCeEEEEEccCC
Q psy10612 386 SSNTVNVRTRDNI 398 (426)
Q Consensus 386 ~~~~v~vk~~~~~ 398 (426)
+.++|+|||+.||
T Consensus 385 ~~~~v~vrnl~~~ 397 (397)
T TIGR00442 385 ANGTVTLKDLETG 397 (397)
T ss_pred hCCeEEEEeCCCC
Confidence 9999999999875
No 27
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=3.5e-41 Score=344.59 Aligned_cols=371 Identities=19% Similarity=0.280 Sum_probs=252.5
Q ss_pred hHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHH-HHcCCeEeecccccchhhHhHhcccccccccc
Q psy10612 27 WNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEY-RKRGFQEVVSPNVYNVKLWQTSGHWAHYSENM 101 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~-~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~ 101 (426)
.-..|++++|+++... -.+|++||.|.|+.+.++|++.|++.| ...|+.+|++|+|.+.++|..|||++.|.+-|
T Consensus 5 ~~~~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~m 84 (551)
T TIGR00389 5 VIMSLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWM 84 (551)
T ss_pred HHHHHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCce
Confidence 3467899999765531 269999999999999999999999999 47889999999999999999999999988877
Q ss_pred eEeee---------------------------------------------------------------CCceEEEcCCCc
Q psy10612 102 FSFDV---------------------------------------------------------------ENETYALKPMNC 118 (426)
Q Consensus 102 y~~~d---------------------------------------------------------------~~~~~~LrP~~t 118 (426)
.+.+. .+...+|||++.
T Consensus 85 v~~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETA 164 (551)
T TIGR00389 85 VDCKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETA 164 (551)
T ss_pred eecCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccc
Confidence 65210 023689999999
Q ss_pred HHHHHHHhhhhcCc-CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHH----------
Q psy10612 119 PGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALD---------- 186 (426)
Q Consensus 119 ~~i~~~~~~~~~~~-~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~---------- 186 (426)
++++-.|.+.+..+ .+||+-.+|||++||||.+| |.||.|+|||+|+++|.|+.|+ ..+.-+..+.+
T Consensus 165 QGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsP-r~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~ 243 (551)
T TIGR00389 165 QGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEISP-RNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQM 243 (551)
T ss_pred hhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccCc-ccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchh
Confidence 99999998876544 48999999999999999999 7999999999999999999995 33222221111
Q ss_pred ------------------------HHHHHHHHcCCe-EEEEEecCCCccCCCchhHHHHHHHHHHhhccC-----CCC--
Q psy10612 187 ------------------------FLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSF-----GEP-- 234 (426)
Q Consensus 187 ------------------------~~~~il~~lgi~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~-----~~~-- 234 (426)
....+|.++||+ -.++.-. .+ .+.+.+|...+ ..+
T Consensus 244 ~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrq----h~---------~~e~AHYa~~~~D~e~~~~~G 310 (551)
T TIGR00389 244 QESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQ----HD---------KNEMAHYAKDCWDFEFLTPYG 310 (551)
T ss_pred hhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecc----cC---------cHHHhhhccccEeEEEecCCC
Confidence 113444445553 1111100 00 01111111100 000
Q ss_pred ------------ceeC-----CCC-C----ccccCccce----eeec-ccCCceee---------e-----eee--e---
Q psy10612 235 ------------WTEN-----PGD-G----AFYGPKIDI----TITD-ALKRPHQC---------A-----TIQ--L--- 268 (426)
Q Consensus 235 ------------~~~~-----~~~-~----~~~~p~~~~----~~~~-~~~~~~~~---------~-----~~~--l--- 268 (426)
|.+. .+. . .+-.|+... .... .+|..+.. . .+. +
T Consensus 311 w~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (551)
T TIGR00389 311 WIECVGIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKN 390 (551)
T ss_pred cEEEEEeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhcc
Confidence 0000 000 0 000111000 0000 01110000 0 000 0
Q ss_pred eecCCe-EEeEEEe--CCCCccccCEEEecccccchHHHHHHHHHhc------------CCCCCCCCCCceEEEEeCCCC
Q psy10612 269 DFQLPI-RFNLAYV--NEKGEKNRPVMIHRAILGSVERMVAILTESY------------AGKWPFWISPRQGIVIPVAEP 333 (426)
Q Consensus 269 ~~~~~~-~~~~~~~--~~~~~y~~~v~~~~~~~GgleRll~~l~e~~------------g~~~p~~~ap~~V~Vi~~~~~ 333 (426)
.|.+.. -+.+... .-.|....|+++. .++| ++|++++|+++. ++.||+++||++|+|+|++++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~P~VIe-pS~G-IdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~ 468 (551)
T TIGR00389 391 EVELDKDLVEIEMVTEVVHGEKYIPHVIE-PSFG-IDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNK 468 (551)
T ss_pred ceecchhhhhheeeeeccCCcEecceEEE-cccC-HHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCc
Confidence 011110 0011100 0112222465554 5577 999999998742 247899999999999999854
Q ss_pred --hHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHH
Q psy10612 334 --FNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITR 411 (426)
Q Consensus 334 --~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~ 411 (426)
..++|.+|++.||++|++|++|+ ++ ++|+|+++|++.|+|++|+||++|+++|+|+||+|+|++|..++++++.+.
T Consensus 469 ~el~~~A~eIa~~LR~~GI~VeiD~-s~-sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~ 546 (551)
T TIGR00389 469 EELKEIAKEIFQALRKTGIRIKYDD-SG-TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSY 546 (551)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEC-CC-CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHH
Confidence 78899999999999999999998 45 599999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q psy10612 412 FGKL 415 (426)
Q Consensus 412 i~~~ 415 (426)
+.++
T Consensus 547 L~e~ 550 (551)
T TIGR00389 547 IKKL 550 (551)
T ss_pred HHhh
Confidence 8754
No 28
>KOG1936|consensus
Probab=100.00 E-value=5.8e-42 Score=328.69 Aligned_cols=359 Identities=15% Similarity=0.166 Sum_probs=261.6
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPG 120 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~ 120 (426)
++|+|++||-|..+.++++|.+.+.++|.+||+..|+||+||-.+++..+-+.|. +.+|.++|+ |+-++||||.|+|
T Consensus 61 KtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds--kLiYdlkDQGGEl~SLRYDLTVP 138 (518)
T KOG1936|consen 61 KTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS--KLIYDLKDQGGELCSLRYDLTVP 138 (518)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc--ceeEehhhcCCcEEEeecccccH
Confidence 4699999999999999999999999999999999999999999999987655443 889999999 7788899999999
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCC--CCCCCCccceeEeEcCeeEecCcc--chHHHHHHHHHHHHHHHHHcC
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELS--GALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFG 196 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~--~~~~Gl~R~REF~q~d~~~fg~~~--~~~~e~~~~~~~~~~il~~lg 196 (426)
++|+++.+. ---+|.|+|+++||++.| .+ ||+|||+|+|+++.|.-+ -+|+|+++++ .++|+.||
T Consensus 139 fARylAmNk----i~sikRy~iAkVyRRd~P~mtr----GR~REFYQcDFDIAG~~d~M~pdaE~lkiv---~e~L~~l~ 207 (518)
T KOG1936|consen 139 FARYLAMNK----ITSIKRYHIAKVYRRDQPAMTR----GRYREFYQCDFDIAGQFDPMIPDAECLKIV---VEILSRLG 207 (518)
T ss_pred HHHHHHHcc----cccceeeeEEEEEeccCchhhc----hhhhhhhccCccccccCCCCCchHHHHHHH---HHHHhhcC
Confidence 999998652 225899999999999988 44 999999999999999654 6999998775 99999999
Q ss_pred Ce-EEEEEecCCC-----ccCCCch----------------hHHHHHHHHHHhhccCCCCceeC---------CCCCcc-
Q psy10612 197 FT-FNLRLSTRPE-----KYLGELE----------------VWNKAEKQLEASLNSFGEPWTEN---------PGDGAF- 244 (426)
Q Consensus 197 i~-~~i~~~~~~~-----~~~G~~~----------------~~~~~~~~l~~~l~~~~~~~~~~---------~~~~~~- 244 (426)
|. |.+.+|||.. ...|.++ .|+.... +...+.|..-+.. .|...+
T Consensus 208 Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkk---Emv~eKGlsee~ad~igeyv~~~g~~eL~ 284 (518)
T KOG1936|consen 208 IGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKK---EMVFEKGLSEEAADRIGEYVSLKGLDELL 284 (518)
T ss_pred ccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHH---HHHHhcCCCHHHHHHHHHHhhhccHHHHH
Confidence 95 9999999841 1134432 1332211 1111112111100 000000
Q ss_pred ----ccCcccee--eecccCCcee-eeeeeeeecCC--eEEeEEEeCCCCccccCEEE----e-----------------
Q psy10612 245 ----YGPKIDIT--ITDALKRPHQ-CATIQLDFQLP--IRFNLAYVNEKGEKNRPVMI----H----------------- 294 (426)
Q Consensus 245 ----~~p~~~~~--~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~~~~~~~y~~~v~~----~----------------- 294 (426)
..|++..+ ...++. +.. .-.....|.+. ..||++..||++|||+.++- +
T Consensus 285 e~l~~d~~l~~n~~a~eal~-dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e 363 (518)
T KOG1936|consen 285 EKLIADPKLSQNEAAKEALA-DLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTE 363 (518)
T ss_pred HHHhcCCcccccHHHHHHHH-HHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhcccccc
Confidence 01111000 000000 000 00000012333 34677778888888876631 0
Q ss_pred ----------------------------c--ccccchHHHHHHHHHhcCCC-CCCCCCCceEEEEeCCCChHHHHHHHHH
Q psy10612 295 ----------------------------R--AILGSVERMVAILTESYAGK-WPFWISPRQGIVIPVAEPFNEYADQVKN 343 (426)
Q Consensus 295 ----------------------------~--~~~GgleRll~~l~e~~g~~-~p~~~ap~~V~Vi~~~~~~~~~a~~ia~ 343 (426)
| .++ |+|||+..|.+...-. ..-.....+|+|...+........++.+
T Consensus 364 ~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~S~-GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~ 442 (518)
T KOG1936|consen 364 PGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQSV-GVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVN 442 (518)
T ss_pred CCCccccccCcchhhHHHHhccccCcCCccceee-hHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHH
Confidence 0 012 6999999886542100 0111245689999999888999999999
Q ss_pred HHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhh
Q psy10612 344 KIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKEN 418 (426)
Q Consensus 344 ~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~ 418 (426)
.||.+||..++-+....++-+||++|++.|||+++|+|++|+++|.|+||+..+++.+.++.++++..+++.++.
T Consensus 443 ~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~~ 517 (518)
T KOG1936|consen 443 ALWDAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDLLSQ 517 (518)
T ss_pred HHHhcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHHhcC
Confidence 999999999977756678999999999999999999999999999999999999999999999999999987753
No 29
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-40 Score=329.08 Aligned_cols=373 Identities=17% Similarity=0.224 Sum_probs=264.0
Q ss_pred CCCCChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHH--HHcCCeEeecccccchhhHhHhccc
Q psy10612 21 PISFVLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEY--RKRGFQEVVSPNVYNVKLWQTSGHW 94 (426)
Q Consensus 21 ~~~~~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~--~~~G~~~i~tP~l~~~~l~~~sg~~ 94 (426)
|.+....-..|++++|+++... -.+|+|||.|.|..+.++|++.|++.| .+-+..+|++|+|.+..+|..|||.
T Consensus 2 ~~~~~~~i~~l~krrgf~~~s~eiYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~ 81 (539)
T PRK14894 2 PATSLDQIVALAKRRGFIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHE 81 (539)
T ss_pred CcchHHHHHHHHHhCCCCccCccccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCC
Confidence 3444455688999999877642 369999999999999999999999988 4667889999999999999999999
Q ss_pred ccccccceEeee------------------------------------C-----CceEEEcCCCcHHHHHHHhhhhcCc-
Q psy10612 95 AHYSENMFSFDV------------------------------------E-----NETYALKPMNCPGHCLIFDHRVRSW- 132 (426)
Q Consensus 95 ~~~~~e~y~~~d------------------------------------~-----~~~~~LrP~~t~~i~~~~~~~~~~~- 132 (426)
+.|.+-|..++. . +...+|||++.++++-.|.+.+..+
T Consensus 82 ~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~ 161 (539)
T PRK14894 82 ETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSA 161 (539)
T ss_pred CCCCCceeECCCCCccccCccceeeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcC
Confidence 988766554211 0 1358999999999999998866544
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe-EEEEEecCCCccC
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYL 211 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~~~~~ 211 (426)
++||+-+.|||++||||..+ |.||.|+|||+|++++.|..|+.+...+.--+.....+|.++||+ -.++.... .
T Consensus 162 ~klPFgiaQIGk~FRNEIsP-r~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h----~ 236 (539)
T PRK14894 162 RKLPFGIAQVGKAFRNEINP-RNFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDV----P 236 (539)
T ss_pred CCCCeeEEeeeccccCccCC-CCceeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeec----C
Confidence 58999999999999999999 799999999999999999999754433333344457888999996 33333111 0
Q ss_pred CCchhHHHHHHHHHHhhccCCCCceeC-C--CCCccccC--ccceeeecccCCceee--e--ee--eeeecCCeEEeEEE
Q psy10612 212 GELEVWNKAEKQLEASLNSFGEPWTEN-P--GDGAFYGP--KIDITITDALKRPHQC--A--TI--QLDFQLPIRFNLAY 280 (426)
Q Consensus 212 G~~~~~~~~~~~l~~~l~~~~~~~~~~-~--~~~~~~~p--~~~~~~~~~~~~~~~~--~--~~--~l~~~~~~~~~~~~ 280 (426)
.+.+.+|...+ .+++.. + |-....|- +-++ .+.. |+. . .+ ....+-....++.+
T Consensus 237 ---------~~ElAHYa~~~-~D~e~~~p~~Gw~E~~Gia~Rtdy----DL~~-H~~~s~~~~l~~~~~~~~~s~~~l~~ 301 (539)
T PRK14894 237 ---------PDELAHYSKRT-FDLMYDYPNIGVQEIEGIANRTDY----DLGS-HSKDQEQLNLTARVNPNEDSTARLTY 301 (539)
T ss_pred ---------cHHhhhhhhcc-EEEEEECCCCCeEEEEEeeccccc----CHHH-HhhhcccCCceeeeccccCCCceEEE
Confidence 11122222111 111110 1 00000000 0000 0000 000 0 00 00011111223333
Q ss_pred eCC-CCccccCEEEecccccchHHHHHHHHHh------------------------------------------------
Q psy10612 281 VNE-KGEKNRPVMIHRAILGSVERMVAILTES------------------------------------------------ 311 (426)
Q Consensus 281 ~~~-~~~y~~~v~~~~~~~GgleRll~~l~e~------------------------------------------------ 311 (426)
.+. .+..-.|.++ ..++| ++|++.++++.
T Consensus 302 ~~~~~~~~~iP~Vi-EpS~G-~dR~~~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 379 (539)
T PRK14894 302 FDQASGRHVVPYVI-EPSAG-VGRCMLAVMCEGYAEELTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGE 379 (539)
T ss_pred EeccCCcccCCcee-ecCcc-hhHHHHHHHHHHHhhhhhcccccccccccccchhhhccccccccccccccccccccccc
Confidence 322 1211123333 45677 99998877642
Q ss_pred ------------------------------------------cC--CCCCCCCCCceEEEEeCCC---ChHHHHHHHHHH
Q psy10612 312 ------------------------------------------YA--GKWPFWISPRQGIVIPVAE---PFNEYADQVKNK 344 (426)
Q Consensus 312 ------------------------------------------~g--~~~p~~~ap~~V~Vi~~~~---~~~~~a~~ia~~ 344 (426)
+. +.||+|+||+||+|+|+.+ ...++|.+|++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~rgvLplp~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~ 459 (539)
T PRK14894 380 ALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHYRTVLRLKPRLAPIKVAVFPLKRNHEGLVATAKAVRRQ 459 (539)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCcccceecCCCcCCCCceEEEEeccccccchHHHHHHHHHH
Confidence 11 3477999999999999986 345999999999
Q ss_pred HHHCCC-eEEEcCCCCCCHHHHHHHHHHhCCcEEEEE-------ecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 345 IFAAGF-MCDADLDSSDTLNKKIRNAQISQYNFIMVV-------GEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 345 Lr~~Gi-~v~~d~~~~~~lgkk~~~A~~~gip~~iii-------G~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
|+++|+ +|.+|+ ..++|+|+++|+.+|+||+|+| |++|.++|+||||+|++++|..++++++++.|++.+
T Consensus 460 L~~~Gi~rv~~Dd--sesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~ 537 (539)
T PRK14894 460 LQVGGRMRTVYDD--TGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRV 537 (539)
T ss_pred HHHCCCceEEEcC--CCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHh
Confidence 999998 999998 4599999999999999999999 899999999999999999999999999999998876
Q ss_pred h
Q psy10612 417 E 417 (426)
Q Consensus 417 ~ 417 (426)
+
T Consensus 538 ~ 538 (539)
T PRK14894 538 S 538 (539)
T ss_pred c
Confidence 5
No 30
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=9.1e-40 Score=311.72 Aligned_cols=251 Identities=21% Similarity=0.328 Sum_probs=209.1
Q ss_pred CCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHh-Hhcccccccccc
Q psy10612 23 SFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ-TSGHWAHYSENM 101 (426)
Q Consensus 23 ~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~-~sg~~~~~~~e~ 101 (426)
||..|+.+|+++.|+++.. .++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|. .+|+++.|.++|
T Consensus 1 ~~~~w~~~l~~~~~~~d~~-~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~ 79 (261)
T cd00778 1 DFSEWYTEVITKAELIDYG-PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEV 79 (261)
T ss_pred CHHHHHHHHHHHhCCcccC-CCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcce
Confidence 5778999999999998664 57799999999999999999999999999999999999999999985 699999999999
Q ss_pred eEeeeCC-----ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeE-ecCcc
Q psy10612 102 FSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVE 175 (426)
Q Consensus 102 y~~~d~~-----~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~-fg~~~ 175 (426)
|++.|.+ ++++||||+|++++.++++++.|+++||+|+||+|+|||+|.++ ++||+|+|||+|.|+|+ +++++
T Consensus 80 f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~-~~Gl~R~reF~~~d~h~~~~~~e 158 (261)
T cd00778 80 AWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKT-TRPFLRTREFLWQEGHTAHATEE 158 (261)
T ss_pred EEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCC-CCceeEeeeeeeeceeeccCCHH
Confidence 9998862 57999999999999999999999999999999999999999999 59999999999999996 55556
Q ss_pred chHHHHHHHHHHHHHHHHHc-CCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeee
Q psy10612 176 QIGDEIVGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITIT 254 (426)
Q Consensus 176 ~~~~e~~~~~~~~~~il~~l-gi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~ 254 (426)
++++++..+++++.++|+.| ||++.+......+.+.|... ..+++..+.
T Consensus 159 ~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~------------------------------~~~ie~~~p 208 (261)
T cd00778 159 EAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADY------------------------------TYTIEAMMP 208 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecCCccccCCCCcc------------------------------ceEEEEEee
Confidence 99999999999999999999 99976654221112222211 122333343
Q ss_pred cccCCceeeeee-eeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHH
Q psy10612 255 DALKRPHQCATI-QLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTE 310 (426)
Q Consensus 255 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e 310 (426)
.++.++++++ ++++.++.+||++|.+.+|... .+.+ .+.|..+|++++|+.
T Consensus 209 --~~~~~ev~s~~~l~~~~s~r~~i~y~~~~g~~~-~~h~--~~~g~~~R~i~ali~ 260 (261)
T cd00778 209 --DGRALQSGTSHNLGQNFSKAFDIKYQDKDGQKE-YVHQ--TSWGISTRLIGAIIM 260 (261)
T ss_pred --CCCEEEEEeccccccccchhcCCEEECCCCCCc-CcEE--ecccHHHHHHHHHHh
Confidence 4777888776 6888889999999998877543 3333 445656999999874
No 31
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-39 Score=319.75 Aligned_cols=385 Identities=21% Similarity=0.323 Sum_probs=254.6
Q ss_pred hHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHH--cCCeEeecccccchhhHhHhccccccccc
Q psy10612 27 WNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRK--RGFQEVVSPNVYNVKLWQTSGHWAHYSEN 100 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~--~G~~~i~tP~l~~~~l~~~sg~~~~~~~e 100 (426)
.-.+|++++|+++... -.+|+|||.|.|+.+.++|++.|++.|.. -|+.+|+||++.|.++|..|||.+.|.+-
T Consensus 8 ~i~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDp 87 (558)
T COG0423 8 KIVELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDP 87 (558)
T ss_pred HHHHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCcccccccc
Confidence 4578999999877652 26999999999999999999999999943 68999999999999999999999988777
Q ss_pred ceEeee---------------------------------------------------------------CCceEEEcCCC
Q psy10612 101 MFSFDV---------------------------------------------------------------ENETYALKPMN 117 (426)
Q Consensus 101 ~y~~~d---------------------------------------------------------------~~~~~~LrP~~ 117 (426)
|..+++ .++..+|||++
T Consensus 88 lv~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPET 167 (558)
T COG0423 88 LVECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPET 167 (558)
T ss_pred eeeccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccc
Confidence 655221 14578999999
Q ss_pred cHHHHHHHhhhhcCc-CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccc-hHHHHH-------------
Q psy10612 118 CPGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ-IGDEIV------------- 182 (426)
Q Consensus 118 t~~i~~~~~~~~~~~-~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~-~~~e~~------------- 182 (426)
.++++-.|++..... +.||+-..|||+.||||.+| +.||.|+|||+|+++|.|..|+. ...-+.
T Consensus 168 AQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISP-r~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~ 246 (558)
T COG0423 168 AQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISP-RNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPRE 246 (558)
T ss_pred cchhhhhhHHHHHHhccCCCeEEEeechhhccccCc-ccceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHH
Confidence 999999998765544 47999999999999999999 79999999999999999999864 111010
Q ss_pred ----------------------HHHHHHHHHHHHcCCe-EEEEEe-cCCCcc-CCCchhHHH------------------
Q psy10612 183 ----------------------GALDFLRNVYSIFGFT-FNLRLS-TRPEKY-LGELEVWNK------------------ 219 (426)
Q Consensus 183 ----------------------~~~~~~~~il~~lgi~-~~i~~~-~~~~~~-~G~~~~~~~------------------ 219 (426)
-.......++..|||+ =.++.- |-+.+- -=..++||.
T Consensus 247 ~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdR 326 (558)
T COG0423 247 AQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADR 326 (558)
T ss_pred HhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecCCCceEEEEEeecc
Confidence 0111233444455553 111110 000000 000000100
Q ss_pred HHHHHHHhhccCCCCceeC-----C---------CCCccccCccce---eeecccCCceeeeeeeee-ecCCeE---E-e
Q psy10612 220 AEKQLEASLNSFGEPWTEN-----P---------GDGAFYGPKIDI---TITDALKRPHQCATIQLD-FQLPIR---F-N 277 (426)
Q Consensus 220 ~~~~l~~~l~~~~~~~~~~-----~---------~~~~~~~p~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~---~-~ 277 (426)
....|....+..+.++.+- | -+..+++|+... .+.+.+. ........++ +.++.. + .
T Consensus 327 tdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~s-e~~~~~~~~~~~~~~~~~~~i~~ 405 (558)
T COG0423 327 TDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALS-ELEELEKELNGYEVSKDLVIIEE 405 (558)
T ss_pred cccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhh-hhhhhhhccCccccccchhheee
Confidence 0000000000000110000 0 000011111000 0000000 0000000000 000000 0 0
Q ss_pred EEEeCCCCccccCEEEecccccchHHHHHHHHHhc-----C------CCCCCCCCCceEEEEeCCC--ChHHHHHHHHHH
Q psy10612 278 LAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY-----A------GKWPFWISPRQGIVIPVAE--PFNEYADQVKNK 344 (426)
Q Consensus 278 ~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~-----g------~~~p~~~ap~~V~Vi~~~~--~~~~~a~~ia~~ 344 (426)
...+.+. .| .|.++ ..++| ++|++.++++.. + +.+|+++||++|+|+|+.. +..+.|.+|.+.
T Consensus 406 ~~~~~~e-~~-iP~VI-EPSfG-idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~ 481 (558)
T COG0423 406 VEKVTGE-KY-IPHVI-EPSFG-IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEK 481 (558)
T ss_pred eeeccCc-ee-cCcee-ccCCC-chHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHHH
Confidence 0001111 11 23333 45687 999999998752 1 4689999999999999976 488999999999
Q ss_pred HHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhc
Q psy10612 345 IFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENR 419 (426)
Q Consensus 345 Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 419 (426)
|++.|+.|.+|+ ..++|+|++.+|.+|+||+|+|..+.+++++||||+|+|.+|..++++++..+|.+.+.+.
T Consensus 482 L~~~~~~v~yDd--sGsIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~~~ 554 (558)
T COG0423 482 LRELGFNVDYDD--SGSIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIKGG 554 (558)
T ss_pred HHhcCceEEecC--CCcHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhccc
Confidence 999999999998 3599999999999999999999999999999999999999999999999999999888754
No 32
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=1.3e-39 Score=309.61 Aligned_cols=248 Identities=20% Similarity=0.338 Sum_probs=200.0
Q ss_pred hHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee
Q psy10612 27 WNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV 106 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d 106 (426)
...+|+.+.|++ .+.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.++|+++.+.++||++.|
T Consensus 5 ~~~~l~~~ag~~--~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d 82 (255)
T cd00779 5 ISHKLLLRAGFI--RQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKD 82 (255)
T ss_pred cHHHHHHHcCCc--ccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEec
Confidence 345677777865 457899999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 107 E-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 107 ~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
+ +++++||||+|++++.++++++.++++||+|+||+|+|||+|.++ +.||.|+|||+|.|+|+||.++ ++++++..+
T Consensus 83 ~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~-~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i 161 (255)
T cd00779 83 RHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFLMKDAYSFDIDEESLEETYEKM 161 (255)
T ss_pred CCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCC-CCceeeeeeEeHhhheeccCCHHHHHHHHHHH
Confidence 7 689999999999999999999888999999999999999999656 5899999999999999999987 899999999
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceeee
Q psy10612 185 LDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCA 264 (426)
Q Consensus 185 ~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 264 (426)
+..+.++|+.|||+|.+..++. +.+|...+ ..+.+. ..+.+ ++..+++
T Consensus 162 ~~~~~~il~~Lgl~~~~~~~~~--~~~gg~~s----------------~~~~~e------------~~~~~--~~~~e~~ 209 (255)
T cd00779 162 YQAYSRIFKRLGLPFVKVEADS--GAIGGSLS----------------HEFHVL------------SPLKI--TKGIEVG 209 (255)
T ss_pred HHHHHHHHHHcCCcEEEEEecC--CCCCCccc----------------EEEEEE------------EecCC--CCeEEEE
Confidence 9999999999999987777554 55665322 011100 00000 1111111
Q ss_pred ee-eeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHh
Q psy10612 265 TI-QLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTES 311 (426)
Q Consensus 265 ~~-~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~ 311 (426)
.. .+.-..+.++|++|.+.++.. ..++++|+++| ++|++++++|+
T Consensus 210 s~~~lg~~~sr~~~i~~~~~~~~~-~~~~~~~~gi~-~~R~l~ai~e~ 255 (255)
T cd00779 210 HIFQLGTKYSKALGATFLDENGKP-KPLEMGCYGIG-VSRLLAAIIEQ 255 (255)
T ss_pred eeeecchhHHHhcCcEEECCCCCE-EeeEecCccch-HHHHHHHHHcC
Confidence 11 112223678999999877653 56677888897 99999999883
No 33
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=1e-38 Score=330.75 Aligned_cols=374 Identities=19% Similarity=0.259 Sum_probs=249.1
Q ss_pred ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHH-HcCCeEeecccccchhhHhHhcccccccc
Q psy10612 25 VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSE 99 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~-~~G~~~i~tP~l~~~~l~~~sg~~~~~~~ 99 (426)
-..-..|++++|+++..- -.+|+|||.|.|+.+.++|++.|++.|. .-+..+|++|+|.|..+|..|||.+.|.+
T Consensus 75 ~~~l~~l~krRgF~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D 154 (684)
T PLN02734 75 RQAVVNTLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTD 154 (684)
T ss_pred HHHHHHHHHhcCCccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccc
Confidence 445688999999876642 3699999999999999999999999984 45778999999999999999999987766
Q ss_pred cceEe-----------------------e------------------e--------------------------------
Q psy10612 100 NMFSF-----------------------D------------------V-------------------------------- 106 (426)
Q Consensus 100 e~y~~-----------------------~------------------d-------------------------------- 106 (426)
-|.+. . |
T Consensus 155 ~mv~~~~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FN 234 (684)
T PLN02734 155 LMVKDEKTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFN 234 (684)
T ss_pred eeeEcCCCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecc
Confidence 65541 0 0
Q ss_pred -------C---CceEEEcCCCcHHHHHHHhhhhcCc-CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc
Q psy10612 107 -------E---NETYALKPMNCPGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 175 (426)
Q Consensus 107 -------~---~~~~~LrP~~t~~i~~~~~~~~~~~-~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~ 175 (426)
+ +...+|||++.++++-.|.+.+..+ .+||+-.+|||+.||||.+| |.||+|+|||+|+++|.|..|+
T Consensus 235 LMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsP-R~gl~R~REF~qaEiE~Fv~P~ 313 (684)
T PLN02734 235 LMFQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISP-RQGLLRVREFTLAEIEHFVDPE 313 (684)
T ss_pred cceeecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCc-ccceeeechhhhhhhheecCcc
Confidence 0 2468999999999999888766544 48999999999999999999 7999999999999999999987
Q ss_pred -chHHHHHHHHHH-----------------------------------------HHHHHHHcCCe-EEEEEecCCCccCC
Q psy10612 176 -QIGDEIVGALDF-----------------------------------------LRNVYSIFGFT-FNLRLSTRPEKYLG 212 (426)
Q Consensus 176 -~~~~e~~~~~~~-----------------------------------------~~~il~~lgi~-~~i~~~~~~~~~~G 212 (426)
..+.-+..+... ...+|.++||+ -.++.-. .+
T Consensus 314 ~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRq----h~- 388 (684)
T PLN02734 314 DKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQ----HL- 388 (684)
T ss_pred cccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecc----cC-
Confidence 322222211111 12222233332 1111100 00
Q ss_pred CchhHHHHHHHHHHhhccC-----CCCceeC--CC--C--------------Ccc------ccCcc-cee-ee-c--ccC
Q psy10612 213 ELEVWNKAEKQLEASLNSF-----GEPWTEN--PG--D--------------GAF------YGPKI-DIT-IT-D--ALK 258 (426)
Q Consensus 213 ~~~~~~~~~~~l~~~l~~~-----~~~~~~~--~~--~--------------~~~------~~p~~-~~~-~~-~--~~~ 258 (426)
.+.+.+|...+ ..++-+. .| + ..+ -.|+. +.. +. + .+|
T Consensus 389 --------~~EmAHYA~dcwD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g 460 (684)
T PLN02734 389 --------ANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELG 460 (684)
T ss_pred --------cHHHhhhhhccEeEEEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhh
Confidence 01111121110 0000000 00 0 000 01110 000 00 0 011
Q ss_pred Ccee---------------------------eeeeeeeec-CCeEE-------eEEEeC--CCC-ccccCEEEecccccc
Q psy10612 259 RPHQ---------------------------CATIQLDFQ-LPIRF-------NLAYVN--EKG-EKNRPVMIHRAILGS 300 (426)
Q Consensus 259 ~~~~---------------------------~~~~~l~~~-~~~~~-------~~~~~~--~~~-~y~~~v~~~~~~~Gg 300 (426)
..+. .+...++.. ++..+ .+.... -.+ .|. |.++ ..++|
T Consensus 461 ~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i-P~VI-EPS~G- 537 (684)
T PLN02734 461 LAFKGDQKVVVEALEAMNEKEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFT-PSVI-EPSFG- 537 (684)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceec-CceE-ecCcc-
Confidence 0000 000000000 00000 000000 001 111 2222 24566
Q ss_pred hHHHHHHHHHhc-----------CCCCCCCCCCceEEEEeCCC--ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHH
Q psy10612 301 VERMVAILTESY-----------AGKWPFWISPRQGIVIPVAE--PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIR 367 (426)
Q Consensus 301 leRll~~l~e~~-----------g~~~p~~~ap~~V~Vi~~~~--~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~ 367 (426)
++|++++++|+. ++.||+++||++|.|+|+.. +..++|.+|++.||++|++|.+|+ ++.++|+|++
T Consensus 538 IgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd-~~~SIGKRyr 616 (684)
T PLN02734 538 IGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDI-TGTSIGKRYA 616 (684)
T ss_pred HHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEEC-CCCCHhHHHH
Confidence 999999999862 46899999999999999875 467899999999999999999998 5889999999
Q ss_pred HHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 368 NAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 368 ~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
+|+++|+||+|+||. +|+|+||+|++++|..++++++++.|.++++...
T Consensus 617 rADeiGIPf~ItIG~----dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~~~~ 665 (684)
T PLN02734 617 RTDELGVPFAVTVDS----DGSVTIRERDSKDQVRVPVEEVASVVKDLTDGRM 665 (684)
T ss_pred HHHHcCCCEEEEECC----CCeEEEEECCCCceEEeeHHHHHHHHHHHHcCCC
Confidence 999999999999996 8999999999999999999999999998887653
No 34
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2.3e-38 Score=302.05 Aligned_cols=253 Identities=15% Similarity=0.206 Sum_probs=201.8
Q ss_pred CCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccc-cccc
Q psy10612 23 SFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHY-SENM 101 (426)
Q Consensus 23 ~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~-~~e~ 101 (426)
|+..|+.+|+.+.|++.. ..++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.++|+++.+ .++|
T Consensus 1 ~~~~~~~~~l~~ag~~~~-~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~ 79 (264)
T cd00772 1 DASEKSLEHIGKAELADQ-GPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKEL 79 (264)
T ss_pred ChhHHHHHHHHhcCCccc-cCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccc
Confidence 467899999999997543 24899999999999999999999999999999999999999999999999988774 4899
Q ss_pred eEeeeCC-----ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-
Q psy10612 102 FSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE- 175 (426)
Q Consensus 102 y~~~d~~-----~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~- 175 (426)
|.++|.+ ++++||||+|+++++++++++.++++||+|+||+++|||+|.++ ++||.|+|||+|.|+++|+.+.
T Consensus 80 ~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~-~~Gl~R~reF~~~e~~~~~~~~e 158 (264)
T cd00772 80 AVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAE 158 (264)
T ss_pred eEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCC-CCCcceeeEEEEeeeEEecCCHH
Confidence 9998873 78999999999999999999999999999999999999999777 5899999999999999997655
Q ss_pred chHHHHHHHHHHHHHHHHHcC-CeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeee
Q psy10612 176 QIGDEIVGALDFLRNVYSIFG-FTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITIT 254 (426)
Q Consensus 176 ~~~~e~~~~~~~~~~il~~lg-i~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~ 254 (426)
++++|+..+++.+.++++.|| ++|++...+++..++|...+ .+++.. .|
T Consensus 159 ~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~----------------~d~e~~-------~p------- 208 (264)
T cd00772 159 EADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKS----------------REFEAL-------ME------- 208 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCC----------------EEEEEE-------CC-------
Confidence 899999999999999999999 89988887765555554322 111111 11
Q ss_pred cccCCceeeeeee-eeecCCeE--EeEEEeCCCCccccCEEEecccccchHHHHHHHHHh
Q psy10612 255 DALKRPHQCATIQ-LDFQLPIR--FNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTES 311 (426)
Q Consensus 255 ~~~~~~~~~~~~~-l~~~~~~~--~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~ 311 (426)
.++..+....+ +....+.+ ++++|.+.+|. ...++++|+++| +.|++++++|+
T Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~n~~gi~-~~R~l~aile~ 264 (264)
T cd00772 209 --DGKAKQAETGHIFGEGFARAFDLKAKFLDKDGK-EKFFEMGCWGIG-ISRFIGAIIEQ 264 (264)
T ss_pred --CCCEeEEEeeeeccCCchhhcCCccEEECCCCC-EEEEEeccccch-HHHHHHHhhcC
Confidence 01111111100 11112343 44889876654 345666788887 99999999873
No 35
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=4.5e-38 Score=305.22 Aligned_cols=264 Identities=20% Similarity=0.356 Sum_probs=209.4
Q ss_pred ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhccccccccc
Q psy10612 25 VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 100 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e 100 (426)
..+|++||++++||++++ .++|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|.++|||+.+.++
T Consensus 18 ~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~ 97 (297)
T cd00770 18 PKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQ 97 (297)
T ss_pred CCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhc
Confidence 579999999999998753 4788999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC---CCCCCccceeEeEcCeeEecCccch
Q psy10612 101 MFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTVEQI 177 (426)
Q Consensus 101 ~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~---~~~Gl~R~REF~q~d~~~fg~~~~~ 177 (426)
||++.| ++++|+||+|++++.+++++..|+++||+|++|+|+|||+|.++ ..+||.|.|||+|.|+++|+.++++
T Consensus 98 ~f~v~~--~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~ 175 (297)
T cd00770 98 LYKVEG--EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEES 175 (297)
T ss_pred ccEecC--CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHH
Confidence 999976 78999999999999999999899999999999999999999885 2589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCcee-CCCCCccccCccceeeecc
Q psy10612 178 GDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTE-NPGDGAFYGPKIDITITDA 256 (426)
Q Consensus 178 ~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~p~~~~~~~~~ 256 (426)
++++..+++++.++++.|||++++..... +.+|...... .+++. .++...+ .+ +
T Consensus 176 ~~~~~~~l~~~~~i~~~lgl~~~~~~~~~--~dl~~~~~~~--------------~d~e~~~p~~~~~----~e--~--- 230 (297)
T cd00770 176 WEELEELISNAEEILQELGLPYRVVNICT--GDLGFAAAKK--------------YDIEAWMPGQGKY----RE--I--- 230 (297)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEccC--ccccCchhhh--------------eeeheecCCCCCe----EE--E---
Confidence 99999999999999999999976665321 3344332100 01110 1111000 00 0
Q ss_pred cCCceeeeeeeeeecCCeEEeEEEeCCC-CccccCE-EEecccccchHHHHHHHHHhc----CCCCC-CCCCCc
Q psy10612 257 LKRPHQCATIQLDFQLPIRFNLAYVNEK-GEKNRPV-MIHRAILGSVERMVAILTESY----AGKWP-FWISPR 323 (426)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~y~~~v-~~~~~~~GgleRll~~l~e~~----g~~~p-~~~ap~ 323 (426)
..|.+. .||. +.+++++|.++. +.. .++ ++.++++| ++|++++|+|++ |++|| ..++||
T Consensus 231 ----~s~s~~-~d~~-s~r~~i~y~~~~~~~~-~~~~~~~~~~~~-~~R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 231 ----SSCSNC-TDFQ-ARRLNIRYRDKKDGKK-QYVHTLNGTALA-TPRTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred ----EEccCc-cChh-hhhcCcEEecCCCCCe-eeeeEecccchH-HHHHHHHHHHhCcCCCCcEeCchhhccc
Confidence 111111 2443 577899999874 443 344 34677776 999999999985 55666 566775
No 36
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-37 Score=312.17 Aligned_cols=282 Identities=19% Similarity=0.293 Sum_probs=222.4
Q ss_pred ccccCCCCCCCCC---------CCCC-ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHH-Hc
Q psy10612 8 LVLPECGDSNRMM---------PISF-VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYR-KR 72 (426)
Q Consensus 8 ~~~~~~~~~~~~~---------~~~~-~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~-~~ 72 (426)
+-+|+++|++.+. .++| ..+|++|+++++||++.. .++|++.|+|.|++++++|++++.+.+. +.
T Consensus 109 ~~vP~g~~~~~n~~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~ 188 (425)
T PRK05431 109 DSVPVGKDEDDNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEH 188 (425)
T ss_pred ccCCCCCCCCCceEEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhc
Confidence 4568887775431 2233 479999999999998753 4788999999999999999999988887 99
Q ss_pred CCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC
Q psy10612 73 GFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG 152 (426)
Q Consensus 73 G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~ 152 (426)
||++|.||.|.+.++|.++|+++.|.++||++.+ ++++|+||+|++++.++++++.++++||+|++++++|||+|.++
T Consensus 189 G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~--~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~ 266 (425)
T PRK05431 189 GYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED--DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGS 266 (425)
T ss_pred CCEEEeccccccHHHHhhcCccccchhhceEecC--CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCc
Confidence 9999999999999999999999999999999964 68999999999999999999999999999999999999999965
Q ss_pred ---CCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhc
Q psy10612 153 ---ALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLN 229 (426)
Q Consensus 153 ---~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~ 229 (426)
.++||.|+|||+|.|+++|+.++++++++..+++.+.++|+.|||+|+++.... +.+|......
T Consensus 267 ~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s--~dlg~~a~~~----------- 333 (425)
T PRK05431 267 AGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVVLLCT--GDLGFSAAKT----------- 333 (425)
T ss_pred CCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCC--cccCCchHhe-----------
Confidence 269999999999999999999999999999999999999999999987754221 4455543211
Q ss_pred cCCCCce-eCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCC-CCccccCE-EEecccccchHHHHH
Q psy10612 230 SFGEPWT-ENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNE-KGEKNRPV-MIHRAILGSVERMVA 306 (426)
Q Consensus 230 ~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~y~~~v-~~~~~~~GgleRll~ 306 (426)
.+++ +.++...+ .+ + .+|++. .||+ +.+++++|.+. .|. ...+ ++++++++ ++|+++
T Consensus 334 ---~DiE~w~p~~~~~----~e--v-------~s~snc-~d~q-srr~~i~~~~~~~~~-~~~~htln~t~~a-~~R~l~ 393 (425)
T PRK05431 334 ---YDLEVWLPSQNTY----RE--I-------SSCSNC-TDFQ-ARRANIRYRDEGDGK-PELVHTLNGSGLA-VGRTLV 393 (425)
T ss_pred ---ecHHHhCcccCCe----eE--E-------EEecCc-cchh-hhhcCcEEecCCCCc-eeEEEEeCCchhh-HHHHHH
Confidence 1111 11211111 01 1 112211 1333 67788999876 443 2334 46778887 999999
Q ss_pred HHHHhc----C-CCCCCCCCCce
Q psy10612 307 ILTESY----A-GKWPFWISPRQ 324 (426)
Q Consensus 307 ~l~e~~----g-~~~p~~~ap~~ 324 (426)
+++|++ | +.||+.++||.
T Consensus 394 ailE~~q~~~g~i~iP~~l~py~ 416 (425)
T PRK05431 394 AILENYQQADGSVTIPEVLRPYM 416 (425)
T ss_pred HHHHHCCCCCCcEECChhhhccc
Confidence 999985 6 78999999985
No 37
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=6.4e-37 Score=309.06 Aligned_cols=281 Identities=19% Similarity=0.321 Sum_probs=219.2
Q ss_pred ccccCCCCCCCCC---------CCCC-ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcC
Q psy10612 8 LVLPECGDSNRMM---------PISF-VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRG 73 (426)
Q Consensus 8 ~~~~~~~~~~~~~---------~~~~-~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G 73 (426)
+-||++.|++++. .+++ ..+|++|++++|+|++.. .++|++.|+|.|++++++|++++.+.+.+.|
T Consensus 112 ~~vP~g~~~~~n~~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G 191 (418)
T TIGR00414 112 ESVPVGKDEEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNG 191 (418)
T ss_pred ccCCCCCCcccCeEeeecCCCCCCCCCCCCHHHHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcC
Confidence 4578887774432 1122 569999999999998753 4788999999999999999999999999999
Q ss_pred CeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC-
Q psy10612 74 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG- 152 (426)
Q Consensus 74 ~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~- 152 (426)
|++|.||.|.+.++|.++|+++.|.++||++.+ ++++|+||+|++++.++++++.++++||+|++++|+|||+|.++
T Consensus 192 ~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~--~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~ 269 (418)
T TIGR00414 192 YQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED--TDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSY 269 (418)
T ss_pred CEEEeCCccccHHHHhhcCccccccccceEecC--CCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCcc
Confidence 999999999999999999999999999999964 67999999999999999999999999999999999999999864
Q ss_pred --CCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEEE-ecCCCccCCCchhHHHHHHHHHHhhc
Q psy10612 153 --ALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRL-STRPEKYLGELEVWNKAEKQLEASLN 229 (426)
Q Consensus 153 --~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~~-~~~~~~~~G~~~~~~~~~~~l~~~l~ 229 (426)
..+||.|+|||+|.|+++|+.++++.+++..+++.+.++|+.|||+|+++. .+ +.+|......
T Consensus 270 G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t---~dlg~~a~~~----------- 335 (418)
T TIGR00414 270 GKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLCS---GDLGFSAAKK----------- 335 (418)
T ss_pred CCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCc---cccccCHhhh-----------
Confidence 257999999999999999999999999999999999999999999987654 33 3455432210
Q ss_pred cCCCCce-eCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCCCCccccCEE-EecccccchHHHHHH
Q psy10612 230 SFGEPWT-ENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVM-IHRAILGSVERMVAI 307 (426)
Q Consensus 230 ~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~-~~~~~~GgleRll~~ 307 (426)
.+++ +.++...+ .+ + ..|++. .||+ +.+++++|.+..+.....+. +.++++| ++|++++
T Consensus 336 ---ydiE~w~p~~~~~----~e--v-------~s~sn~-~d~q-srr~~i~y~~~~~~~~~~vh~ln~~~~a-i~R~i~A 396 (418)
T TIGR00414 336 ---YDLEVWMPGQNTY----RE--I-------SSCSNC-TDFQ-ARRLNIRYKDKNKGKNKYVHTLNGTALA-IGRTIVA 396 (418)
T ss_pred ---hhHHHhCCCcCce----EE--E-------EEEcCc-chHh-HHhCCcEEECCCCCceEEEEeecCcchH-HHHHHHH
Confidence 0111 11111111 01 1 112222 2443 57789999876432223443 3677776 9999999
Q ss_pred HHHhc----C-CCCCCCCCCc
Q psy10612 308 LTESY----A-GKWPFWISPR 323 (426)
Q Consensus 308 l~e~~----g-~~~p~~~ap~ 323 (426)
++|++ | +.||..++||
T Consensus 397 ile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 397 ILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred HHHHccCCCCCEeCChhcccc
Confidence 99975 5 4599999987
No 38
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=297.84 Aligned_cols=313 Identities=17% Similarity=0.211 Sum_probs=218.6
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCP 119 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~ 119 (426)
+.|+|++||+|..+..++++++.+++.|+++||.+|.||+||+.++|....+ +...++||+|.|+ |+.++||||.|+
T Consensus 4 ~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g-~~~~~~~~~f~d~~~g~~l~LRpD~T~ 82 (391)
T PRK12292 4 QLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG-AILDLRTFKLVDQLSGRTLGLRPDMTA 82 (391)
T ss_pred CCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCC-ccchhhhEEEeecCCCCEEEECCCCcH
Confidence 4689999999999999999999999999999999999999999999976543 3456899999997 789999999999
Q ss_pred HHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 120 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 120 ~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
|++|+++.... ....|+|+||+|+|||+|.++. +|+|||+|+|+|+||.++ .+|+|++.++ .++++.||++
T Consensus 83 ~iaR~~a~~~~-~~~~p~r~~y~g~vfR~~~~~~----gr~ref~Q~g~EiiG~~~~~aDaEvi~l~---~~~l~~lgl~ 154 (391)
T PRK12292 83 QIARIAATRLA-NRPGPLRLCYAGNVFRAQERGL----GRSREFLQSGVELIGDAGLEADAEVILLL---LEALKALGLP 154 (391)
T ss_pred HHHHHHHHhcc-CCCCCeEEEeeceeeecCCCcC----CCccchhccceEEeCCCCchHHHHHHHHH---HHHHHHcCCC
Confidence 99999986543 2457999999999999999998 999999999999999988 8999998765 9999999996
Q ss_pred -EEEEEecCC-----CccCCCchhHHHHHHHHHHhhccC----------CCCceeCCC---CCccccCc--cc---eeee
Q psy10612 199 -FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNSF----------GEPWTENPG---DGAFYGPK--ID---ITIT 254 (426)
Q Consensus 199 -~~i~~~~~~-----~~~~G~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~---~~~~~~p~--~~---~~~~ 254 (426)
+.+.++|+. ...+|.++.. .+.+..++.+. +.+....+. -....++. ++ ....
T Consensus 155 ~~~i~i~~~~i~~~il~~~~~~~~~---~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~ 231 (391)
T PRK12292 155 NFTLDLGHVGLFRALLEAAGLSEEL---EEVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLLP 231 (391)
T ss_pred CeEEEeccHHHHHHHHHHcCCCHHH---HHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 999998863 1223433221 11111122111 000000000 00000100 00 0000
Q ss_pred -cccC---Ccee-eee-ee-eeecCCeEEeEEEeCCCCccccCEEE-e-----c-------------------cccc---
Q psy10612 255 -DALK---RPHQ-CAT-IQ-LDFQLPIRFNLAYVNEKGEKNRPVMI-H-----R-------------------AILG--- 299 (426)
Q Consensus 255 -~~~~---~~~~-~~~-~~-l~~~~~~~~~~~~~~~~~~y~~~v~~-~-----~-------------------~~~G--- 299 (426)
.... .++. ... +. ........+|++.+++.+|||++++- . . ..+|
T Consensus 232 ~~~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAvGfai 311 (391)
T PRK12292 232 SLPIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFGRARPATGFSL 311 (391)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCCCCcccCCcchhhHHHHcCCCCCCceEEe
Confidence 0000 0000 000 00 01112245778888888888887741 0 0 0112
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCC
Q psy10612 300 SVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQY 374 (426)
Q Consensus 300 gleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gi 374 (426)
|+|||+.+ .. +....+.+++|++.+++....|.+++++||+.|++|+++. ...++++++++|++.|+
T Consensus 312 ~ldrl~~~-~~------~~~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~-~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 312 DLDRLLEL-QL------ELPVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLAL-PGRNFEDAREYARDRQI 378 (391)
T ss_pred eHHHHHhh-cc------ccccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEec-CCCChHHHHHHHhhcCe
Confidence 59998873 11 1112456788888887778889999999999999999998 47789999999999998
No 39
>KOG4163|consensus
Probab=100.00 E-value=2.1e-35 Score=283.09 Aligned_cols=362 Identities=20% Similarity=0.306 Sum_probs=291.0
Q ss_pred CCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhH-hcccccccc
Q psy10612 21 PISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSE 99 (426)
Q Consensus 21 ~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~-sg~~~~~~~ 99 (426)
+.||..|+.+++.+.+++... ..+|.|.+-|.++.+|+.|..++...+.+.|-+...+|.|++..++.+ +.|.+.|..
T Consensus 65 ~~df~~WY~qVitk~emieYy-dvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaP 143 (551)
T KOG4163|consen 65 EEDFPEWYSQVITKGEMIEYY-DVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAP 143 (551)
T ss_pred ccchHHHHHHHhhhhhhheee-cccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCc
Confidence 346789999999999965443 468999999999999999999999999999999999999999999986 679999999
Q ss_pred cceEeeeC-----CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 100 NMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 100 e~y~~~d~-----~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
|+-+++.. .+.++.|||++.-+.-+|+.+++|+++||+|+.|+.+|-|.|-.. ...++|.|||+..+.|.-+..
T Consensus 144 EvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~-p~PFlRtrEFLWQEGHTAfat 222 (551)
T KOG4163|consen 144 EVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKH-PQPFLRTREFLWQEGHTAFAT 222 (551)
T ss_pred ceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccC-CCcchhhhHHHHhcCcchhCC
Confidence 99998765 578999999999999999999999999999999999999999886 467899999999999976665
Q ss_pred -cchHHHHHHHHHHHHHHHHHc-CCeEEEEEecCC---CccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCcc
Q psy10612 175 -EQIGDEIVGALDFLRNVYSIF-GFTFNLRLSTRP---EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKI 249 (426)
Q Consensus 175 -~~~~~e~~~~~~~~~~il~~l-gi~~~i~~~~~~---~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~ 249 (426)
++|+.|+.+++++|.+++..| -++ ++ ..|+ ++|.|. ++. ..+
T Consensus 223 ~~eA~eEvlqiLdlYa~vy~ellAiP--Vv-kGrKse~EkFaGg--------------------d~T----------ttv 269 (551)
T KOG4163|consen 223 PEEAEEEVLQILDLYARVYEELLAIP--VV-KGRKSEKEKFAGG--------------------DYT----------TTV 269 (551)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhccc--cc-cCccchhhhccCC--------------------cce----------EEE
Confidence 499999999999999998775 223 11 1121 111221 111 111
Q ss_pred ceeeecccCCceeeeeee-eeecCCeEEeEEEeCC-CCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCc
Q psy10612 250 DITITDALKRPHQCATIQ-LDFQLPIRFNLAYVNE-KGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPR 323 (426)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~-~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~ 323 (426)
+.++ ...|+..+-.+.+ |..+++.-|++.+.+. .|. +..+ ...+.|=..|.+++++..| |+++|+.+||+
T Consensus 270 Ea~i-~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~-~~fv--~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~v 345 (551)
T KOG4163|consen 270 EAFI-PCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGE-KEFV--WQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPV 345 (551)
T ss_pred eeee-ccccccccccchhhhhHHHHHhhceeecCCCccc-hhhe--eecccccccceeeEEEEEecCCcccccCCcccce
Confidence 2111 1234444444442 3455567788888877 332 2233 3455664578877766544 78999999999
Q ss_pred eEEEEeCCC----------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEE
Q psy10612 324 QGIVIPVAE----------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVR 393 (426)
Q Consensus 324 ~V~Vi~~~~----------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk 393 (426)
||+|+|.+- .+.+++..+...|...|+|++.|++.+.+.|.||...+..|+|+.|-||++++++++|.+-
T Consensus 346 QvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~V 425 (551)
T KOG4163|consen 346 QVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAV 425 (551)
T ss_pred EEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEE
Confidence 999999863 2467899999999999999999996567999999999999999999999999999999999
Q ss_pred EccCCeeeeecHHHHHHHHHHHHhhccc
Q psy10612 394 TRDNIVHGEFSVDDVITRFGKLKENRTL 421 (426)
Q Consensus 394 ~~~~~~q~~v~~~el~~~i~~~~~~~~~ 421 (426)
.|+++++..|+++++.+.++++++..+.
T Consensus 426 rRd~~~K~~v~~~~l~~~v~elLe~iq~ 453 (551)
T KOG4163|consen 426 RRDTGEKKDVSLGDLEKTVKELLEKIQT 453 (551)
T ss_pred EccCCcccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876553
No 40
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=7.1e-34 Score=286.00 Aligned_cols=284 Identities=15% Similarity=0.246 Sum_probs=220.6
Q ss_pred ccccCCCCCCCCC---------CCCCChhHHHHHHhcCCccccc---C-CCcceeeccchHHHHHHHHHHHHHHHHHcCC
Q psy10612 8 LVLPECGDSNRMM---------PISFVLWNRKIGREQELFFFHE---L-SPGSCFFQTKGAFIYNTLVEFIRSEYRKRGF 74 (426)
Q Consensus 8 ~~~~~~~~~~~~~---------~~~~~~~h~~l~~~~~l~~~~~---~-~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~ 74 (426)
|-||+++|++++. .++...+|++|++++|||++.. + +.+++.|.+.|+++.++|++++.+.+.++||
T Consensus 114 ~~VP~G~de~~n~~vr~~g~~~~~~~~~dH~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy 193 (448)
T PLN02678 114 DSVPVSNDEANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLAFLRKRGY 193 (448)
T ss_pred ccCCCCCCcCCCEEEEEEcCCCCCCCCCCHHHHHhhccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHHHHHHcCC
Confidence 5678888876432 1223579999999999998863 3 3445555569999999999999999999999
Q ss_pred eEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC--
Q psy10612 75 QEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG-- 152 (426)
Q Consensus 75 ~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~-- 152 (426)
++|.||.|.+.++|..+||++.|.++||++.+.+++.+|.||+|++++.++++...++++||+|++.+|+|||+|.+.
T Consensus 194 ~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G 273 (448)
T PLN02678 194 TPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHG 273 (448)
T ss_pred EEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCC
Confidence 999999999999999999999999999999766678999999999999999999999999999999999999999972
Q ss_pred -CCCCCccceeEeEcCeeEecCccc--hHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhc
Q psy10612 153 -ALTGLTRVRRFQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLN 229 (426)
Q Consensus 153 -~~~Gl~R~REF~q~d~~~fg~~~~--~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~ 229 (426)
..+||.|+|||+|.|+.+|+.+++ +++++..|++.+.++|+.|||+|+++.-.. +.+|.+....
T Consensus 274 ~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~s--gdlg~~a~~~----------- 340 (448)
T PLN02678 274 RDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVS--GALNDAAAKK----------- 340 (448)
T ss_pred CcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecc--cccCCchhhc-----------
Confidence 479999999999999999999987 999999999999999999999998765322 5566543210
Q ss_pred cCCCCce-eCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCC---CCccccCE-EEecccccchHHH
Q psy10612 230 SFGEPWT-ENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNE---KGEKNRPV-MIHRAILGSVERM 304 (426)
Q Consensus 230 ~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~y~~~v-~~~~~~~GgleRl 304 (426)
.+++ +.++...| .+ + .+|++. .||+ +.|.+++|.++ .+. ...+ +++.+++. +.|+
T Consensus 341 ---yDiE~W~P~~~~y----~E--v-------sS~Snc-~D~Q-aRRl~iryr~~~~~~~~-~~~vHTLNgt~lA-~~R~ 400 (448)
T PLN02678 341 ---YDLEAWFPASKTY----RE--L-------VSCSNC-TDYQ-SRRLEIRYGQKKSNEQT-KQYVHLLNSTLTA-TERT 400 (448)
T ss_pred ---eeeEeeccccCCc----eE--E-------eeeccc-ccHh-hhcccceecccccCCCC-ceeEEecCCchhH-HHHH
Confidence 1222 12332221 01 1 122222 2555 67889999755 222 2233 44556665 9999
Q ss_pred HHHHHHhc----CCCCCCCCCCce
Q psy10612 305 VAILTESY----AGKWPFWISPRQ 324 (426)
Q Consensus 305 l~~l~e~~----g~~~p~~~ap~~ 324 (426)
+.+|+|++ |+.+|..+.||-
T Consensus 401 l~AiLEn~Q~~dgi~iP~vL~pym 424 (448)
T PLN02678 401 LCCILENYQTEDGVRVPEVLQPFM 424 (448)
T ss_pred HHHHHHhCcCCCCeECChhhhhhc
Confidence 99999985 567788777764
No 41
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=3.9e-33 Score=262.57 Aligned_cols=229 Identities=24% Similarity=0.383 Sum_probs=178.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-----CceEEEcCCCcHHHHHHHhhh
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHR 128 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-----~~~~~LrP~~t~~i~~~~~~~ 128 (426)
|+.++++|++++++.+.++||++|.||+|++.++|..+||++.+.++||++.|+ ++.++||||.|+++++++++.
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999886 478999999999999999998
Q ss_pred hcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEEEecCCC
Q psy10612 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPE 208 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~ 208 (426)
..++++||+|++|+|+|||+|.++ ++|++|+|||+|.|+++||.++++.++...+++++.++++.||+++++.+++.+.
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~-~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~~~~ 159 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSG-RRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPF 159 (235)
T ss_pred CccchhcCeeeeeecccccCCCCC-CCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEccChh
Confidence 888889999999999999999998 4899999999999999999996555555566677899999999999998877532
Q ss_pred ccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeeccc-CCceeeeeeeeeecCCeEEeEEEeCCCCcc
Q psy10612 209 KYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL-KRPHQCATIQLDFQLPIRFNLAYVNEKGEK 287 (426)
Q Consensus 209 ~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y 287 (426)
.+... ..+...+.++++++.+.+.. ++.+++...+.++....+....+++.++..
T Consensus 160 --~~~~~----------------------~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 215 (235)
T cd00670 160 --FGRGG----------------------KRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGGG 215 (235)
T ss_pred --hccCC----------------------ccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccCCCc
Confidence 22111 02223345677777666655 676776666555554444333334443332
Q ss_pred ccCEEEecccccchHHHHHHHH
Q psy10612 288 NRPVMIHRAILGSVERMVAILT 309 (426)
Q Consensus 288 ~~~v~~~~~~~GgleRll~~l~ 309 (426)
..|+.++ .+ ||+||++++|+
T Consensus 216 ~~~~~~~-~~-~~~eR~l~all 235 (235)
T cd00670 216 RAHTGCG-GA-GGEERLVLALL 235 (235)
T ss_pred eeeEEEe-Cc-cHHHHHHHHHC
Confidence 2244333 33 56999999874
No 42
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4.8e-33 Score=279.66 Aligned_cols=309 Identities=16% Similarity=0.120 Sum_probs=208.6
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCP 119 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~ 119 (426)
+.++|++|++|..+..+++|++.+++.|+++||.+|.||+||+.++|..+.+ +...+.||+|.|+ |+.++||||.|+
T Consensus 8 ~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g-~~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 8 LLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAG-QDLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCC-ccchhceEEEEcCCCCcEEEECCcCCH
Confidence 3689999999999999999999999999999999999999999999986432 2335679999996 788999999999
Q ss_pred HHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 120 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 120 ~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
|++|++++... .+.|+|+||+|+|||++.++. +|+|||+|+|+|+||.++ .+|+|++.++ .++++.||++
T Consensus 87 ~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~~~~~----gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~---~e~l~~lgi~ 157 (392)
T PRK12421 87 QVARIDAHLLN--REGVARLCYAGSVLHTLPQGL----FGSRTPLQLGAELYGHAGIEADLEIIRLM---LGLLRNAGVP 157 (392)
T ss_pred HHHHHHHhhcC--CCCceEEEEeeeEEEcCCCcC----CCcCccceeceEEeCCCCchhHHHHHHHH---HHHHHHcCCC
Confidence 99998876532 256999999999999998887 899999999999999998 8999998775 9999999996
Q ss_pred -EEEEEecCC-----CccCCCchhHHHHHHHHHHhhcc------------CCCCceeCCCCCc---cccCc--cce---e
Q psy10612 199 -FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNS------------FGEPWTENPGDGA---FYGPK--IDI---T 252 (426)
Q Consensus 199 -~~i~~~~~~-----~~~~G~~~~~~~~~~~l~~~l~~------------~~~~~~~~~~~~~---~~~p~--~~~---~ 252 (426)
+.+.++|+. .+.+|.++.+. +.+.+++.+ .+.+-...+.-.. +.|.. ++. .
T Consensus 158 ~~~l~ig~~~i~~~il~~l~l~~~~~---~~l~~~l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~ 234 (392)
T PRK12421 158 ALHLDLGHVGIFRRLAELAGLSPEEE---EELFDLLQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSV 234 (392)
T ss_pred CeEEEeCCHHHHHHHHHHcCCCHHHH---HHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 999998863 12344443221 112222221 1111000000000 00100 000 0
Q ss_pred e---ecccCCcee-eeee--ee-ee--cCCeEEeEEEeCCCCccccCEEEe------c-------------------ccc
Q psy10612 253 I---TDALKRPHQ-CATI--QL-DF--QLPIRFNLAYVNEKGEKNRPVMIH------R-------------------AIL 298 (426)
Q Consensus 253 ~---~~~~~~~~~-~~~~--~l-~~--~~~~~~~~~~~~~~~~y~~~v~~~------~-------------------~~~ 298 (426)
+ ...+..... ...+ .+ .+ .....+|++.+++.+|||++++-. . ..+
T Consensus 235 ~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAv 314 (392)
T PRK12421 235 LALQDAAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPGRGQALARGGRYDGIGEAFGRARPAT 314 (392)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECCCCCcccCCCCccchhHhhCCCCCCc
Confidence 0 000000000 0000 00 11 233567888888888888888410 0 011
Q ss_pred c---chHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCc
Q psy10612 299 G---SVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYN 375 (426)
Q Consensus 299 G---gleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip 375 (426)
| |+|||+.++ +.. + . .+++|++.++. ..+.+++++||+.|++|+++.. + .-.+| +.++.
T Consensus 315 Gfai~lerL~~~l-~~~----~---~-~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~-~-----~~~~~-~~~~~ 376 (392)
T PRK12421 315 GFSMDLKELLALQ-FLE----E---E-AGAILAPWGDD--PDLLAAIAELRQQGERVVQLLP-G-----DDGSS-EPGCD 376 (392)
T ss_pred eEEeeHHHHHhhc-ccc----c---C-CceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCC-C-----cchhH-HhCCC
Confidence 2 699998765 311 1 1 26788887654 4578999999999999999873 3 12224 45777
Q ss_pred EEEEEe
Q psy10612 376 FIMVVG 381 (426)
Q Consensus 376 ~~iiiG 381 (426)
..+++|
T Consensus 377 ~~~~~~ 382 (392)
T PRK12421 377 HRLVLQ 382 (392)
T ss_pred eEEEEE
Confidence 778877
No 43
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.4e-33 Score=280.78 Aligned_cols=283 Identities=18% Similarity=0.206 Sum_probs=210.6
Q ss_pred ccccCCCCCCC-------CCCCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHH-HHHcCCeEeec
Q psy10612 8 LVLPECGDSNR-------MMPISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSE-YRKRGFQEVVS 79 (426)
Q Consensus 8 ~~~~~~~~~~~-------~~~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~-~~~~G~~~i~t 79 (426)
+.+|+++++.. ...++|..||.++++++|+++ +-.++|++.|.|.|++++++|++++++. ..+.||+++.+
T Consensus 170 ~~~~~g~~~~~~~~~~~~~~~~~F~~~h~el~~~~glld-k~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~ 248 (517)
T PRK00960 170 LTFYVGKAEPGTIVSESKKREITFDGDPTEEAEKLGWVK-RFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLF 248 (517)
T ss_pred CccCCCCCCCCeEEEEeCCCCCCCCCCHHHHHHHCCCcc-ccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEEC
Confidence 46677776632 345778899999999999866 3358999999999999999999999876 68889999999
Q ss_pred ccccchhhHhHhcccccccccceEeeeC------------------------------CceEEEcCCCcHHHHHHHhhhh
Q psy10612 80 PNVYNVKLWQTSGHWAHYSENMFSFDVE------------------------------NETYALKPMNCPGHCLIFDHRV 129 (426)
Q Consensus 80 P~l~~~~l~~~sg~~~~~~~e~y~~~d~------------------------------~~~~~LrP~~t~~i~~~~~~~~ 129 (426)
|.|.+.++|.++||++.|.++||.+... ++.++|+|++|++++.+++++.
T Consensus 249 P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~i 328 (517)
T PRK00960 249 PKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGET 328 (517)
T ss_pred CcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCc
Confidence 9999999999999999999999988520 3467999999999999999999
Q ss_pred cCcCCCCceeee-eccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe-EEEEEecCC
Q psy10612 130 RSWRELPLRMAD-FGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207 (426)
Q Consensus 130 ~~~~~lP~k~~~-~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~ 207 (426)
.++++||+|+++ .|+|||+|.+. .+||.|+|||+|.|+++||+++++.+++..++.++..+++.|||+ +++..++ |
T Consensus 329 ls~rdLPLrl~e~sG~cFR~EsGs-~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~D-P 406 (517)
T PRK00960 329 VDVDELPIKFFDRSGWTYRWEGGG-AHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDD-P 406 (517)
T ss_pred CChhhCCHHHhhccCCceeCCCCC-CCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEeccc-c
Confidence 999999999999 67999999655 799999999999999999999999999999999999999999999 5554433 2
Q ss_pred CccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCcccc-Cc--cceeee--cccCCc--eeeeeeeeeecCCeEEeEEE
Q psy10612 208 EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYG-PK--IDITIT--DALKRP--HQCATIQLDFQLPIRFNLAY 280 (426)
Q Consensus 208 ~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-p~--~~~~~~--~~~~~~--~~~~~~~l~~~~~~~~~~~~ 280 (426)
|.+.... . ..++..+-+ .+ ++..+. .+.++. .+..+.+.++ ++.+|++++
T Consensus 407 --Ff~~~~k----------~----------~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~-farrfnIk~ 463 (517)
T PRK00960 407 --FYLEGRG----------L----------EDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTH-FVEGFNIKD 463 (517)
T ss_pred --cccccCc----------c----------ccccccCccccceeEEEEecCccCCCCEEEEEeeeeccch-hhHhhCccc
Confidence 1111000 0 000000000 01 111111 011221 1112222232 367888876
Q ss_pred eCCCCccccCEEEecccccchHHHHHHHHHhcCC---CCCCCCCC
Q psy10612 281 VNEKGEKNRPVMIHRAILGSVERMVAILTESYAG---KWPFWISP 322 (426)
Q Consensus 281 ~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~---~~p~~~ap 322 (426)
. .+. +++.+|+++| ++|++.+|++++|. .||..+.+
T Consensus 464 ~--~g~---~~hTnctG~g-~eR~l~AlLe~hG~d~~~wPe~~r~ 502 (517)
T PRK00960 464 Y--KGR---KLWTGCTGYG-LERWVIGFLAQKGFDPENWPEEIRK 502 (517)
T ss_pred C--CCC---eEeecceeeH-HHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 3 322 2445788887 99999999999863 68865443
No 44
>PLN02320 seryl-tRNA synthetase
Probab=99.97 E-value=5.1e-31 Score=266.45 Aligned_cols=282 Identities=23% Similarity=0.338 Sum_probs=212.3
Q ss_pred ccccCCCCCCC--------CCCCCC-ChhHHHHHHhcCCccccc--CCCccee-eccchHH-HHHHHHHHHHHHHHHcCC
Q psy10612 8 LVLPECGDSNR--------MMPISF-VLWNRKIGREQELFFFHE--LSPGSCF-FQTKGAF-IYNTLVEFIRSEYRKRGF 74 (426)
Q Consensus 8 ~~~~~~~~~~~--------~~~~~~-~~~h~~l~~~~~l~~~~~--~~~G~~~-~lP~~~~-~~~~i~~~i~~~~~~~G~ 74 (426)
+-+|+++|++. ...++| ..+|++||+++|||++.. ..+|.+. |+|.+.. +.++|++++.+...+.||
T Consensus 173 ~~VP~G~de~~~~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy 252 (502)
T PLN02320 173 PDVPVGGEDSSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGF 252 (502)
T ss_pred ccCCCCCCCCCeEEEecCCCCCCCCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 45688877643 112232 479999999999998865 2468877 4777555 558999999999999999
Q ss_pred eEeecccccchhhHhHhcccccccc-cceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC--
Q psy10612 75 QEVVSPNVYNVKLWQTSGHWAHYSE-NMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-- 151 (426)
Q Consensus 75 ~~i~tP~l~~~~l~~~sg~~~~~~~-e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-- 151 (426)
++|.||.|...++|..+||++.+.+ ++|++. +++++|.||++.|++.++.+.+.++++||+|++.+|+|||+|.+
T Consensus 253 ~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~ 330 (502)
T PLN02320 253 TPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAA 330 (502)
T ss_pred EEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccC
Confidence 9999999999999999999877766 777764 57899999999999988888888999999999999999999988
Q ss_pred C-CCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEE-EecCCCccCCCchhHHHHHHHHHHhhc
Q psy10612 152 G-ALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRPEKYLGELEVWNKAEKQLEASLN 229 (426)
Q Consensus 152 ~-~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~-~~~~~~~~~G~~~~~~~~~~~l~~~l~ 229 (426)
+ ..+||.|+|||+|.|+++|+.+++++.|+..|++.+.++|+.|||+|++. +++ +.+|.+...
T Consensus 331 G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~t---gDLg~~a~k------------ 395 (502)
T PLN02320 331 GAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMAT---ADLGAPAYR------------ 395 (502)
T ss_pred CCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecC---Cccchhhhh------------
Confidence 4 47999999999999999999999999999999999999999999996544 555 456654320
Q ss_pred cCCCCcee-CCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCC--------CCc----cccCE-EEec
Q psy10612 230 SFGEPWTE-NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNE--------KGE----KNRPV-MIHR 295 (426)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~----y~~~v-~~~~ 295 (426)
..++++ .|+...|. ++ .+|++. .||+ +.|.+++|.+. .|. ....+ ++++
T Consensus 396 --kyDiEvW~P~~~~y~----Ev---------sS~SNc-~DfQ-aRRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNg 458 (502)
T PLN02320 396 --KFDIEAWMPGLGRYG----EI---------SSASNC-TDYQ-SRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNA 458 (502)
T ss_pred --eEEEEEEecCCCcEE----EE---------eeecch-hhHh-hhcccceeccccccccccccccccCCCcceeEeccc
Confidence 022331 23322210 11 122222 2555 67788888742 221 11223 3445
Q ss_pred ccccchHHHHHHHHHhc----C-CCCCCCCCCce
Q psy10612 296 AILGSVERMVAILTESY----A-GKWPFWISPRQ 324 (426)
Q Consensus 296 ~~~GgleRll~~l~e~~----g-~~~p~~~ap~~ 324 (426)
+++. +.|++.+|+|++ | +.+|..+.||.
T Consensus 459 TalA-v~R~l~AILENyQ~~dGsi~IP~vLrpym 491 (502)
T PLN02320 459 TACA-VPRMIVCLLENYQQEDGSVVIPEPLRPFM 491 (502)
T ss_pred chhH-HHHHHHHHHHhCcCCCCcEECChhhhhhc
Confidence 5565 999999999986 3 67888888874
No 45
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.97 E-value=6.5e-30 Score=256.26 Aligned_cols=269 Identities=17% Similarity=0.222 Sum_probs=206.1
Q ss_pred CCCCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHH-HHHHcCCeEeecccccchhhHhHhcccccc
Q psy10612 19 MMPISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRS-EYRKRGFQEVVSPNVYNVKLWQTSGHWAHY 97 (426)
Q Consensus 19 ~~~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~-~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~ 97 (426)
...++|..||.++++++|++. +-.++|++.|.|.|++++++|++++.+ .+.+.||+++.+|.|.+.+++.++||++.|
T Consensus 188 ~~~~~F~~~h~el~~k~glid-k~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF 266 (520)
T TIGR00415 188 KRDFFFDGDPTDEAEKLGWVK-KFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGL 266 (520)
T ss_pred CCCCCCCCCHHHHHHHCCCee-EEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCC
Confidence 456778899999999999864 335899999999999999999999965 557889999999999999999999999999
Q ss_pred cccceEeee------------------------------CCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeee-ecccc
Q psy10612 98 SENMFSFDV------------------------------ENETYALKPMNCPGHCLIFDHRVRSWRELPLRMAD-FGVLH 146 (426)
Q Consensus 98 ~~e~y~~~d------------------------------~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~-~g~~f 146 (426)
.++||.++. +...++|+||+|.|++.++++++.++++||+|+++ +++||
T Consensus 267 ~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CF 346 (520)
T TIGR00415 267 PEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTY 346 (520)
T ss_pred chhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeE
Confidence 999998842 12378999999999999999999899999999999 56899
Q ss_pred ccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHH
Q psy10612 147 RNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEA 226 (426)
Q Consensus 147 R~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~ 226 (426)
|+|.+. .+|+.|++||+|.+++.+++++++.++...+++.+.++++.|+|+|++..++-|.-..|....
T Consensus 347 R~EaGs-trGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDPFf~~g~k~~---------- 415 (520)
T TIGR00415 347 RWEAGG-AKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEVGDDPFYLEGRKKE---------- 415 (520)
T ss_pred eCCCCC-CCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCcccccccCcc----------
Confidence 999987 589999999999999999999999999999999999999999999998876633100010000
Q ss_pred hhccCCCCceeCCCCCcccc-Cccceee-ecc-----cCCceeeeeeeeeecCCeEEeEEEeCCCCccccCEEEeccccc
Q psy10612 227 SLNSFGEPWTENPGDGAFYG-PKIDITI-TDA-----LKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILG 299 (426)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~-p~~~~~~-~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~G 299 (426)
.++..|.+ .+.+..+ ..+ -+...+..|.+ .-+++..||++ ++.+. +++.+|.++|
T Consensus 416 ------------~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~H-g~hF~k~F~I~--~~~~~---~a~ttC~G~g 477 (520)
T TIGR00415 416 ------------DRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVH-GTHFIEGFRIK--DAKGL---NIWTGCTGIG 477 (520)
T ss_pred ------------cccccCcccceEEEEEEEccccCCCCCcEEEEeech-hcccccccCcc--cCCCC---eEEEeeeecc
Confidence 00011111 1112111 000 12223344444 44556778877 33332 4566688887
Q ss_pred chHHHHHHHHHhcCCC---CCC
Q psy10612 300 SVERMVAILTESYAGK---WPF 318 (426)
Q Consensus 300 gleRll~~l~e~~g~~---~p~ 318 (426)
++|++++|+.+||+. ||.
T Consensus 478 -leR~i~Ali~~HG~d~~~Wp~ 498 (520)
T TIGR00415 478 -ISRWIVGFLAQKGFEFDDWHD 498 (520)
T ss_pred -HHHHHHHHHHHhCCChhhCCH
Confidence 999999999999863 663
No 46
>KOG2298|consensus
Probab=99.97 E-value=1.7e-30 Score=252.00 Aligned_cols=375 Identities=17% Similarity=0.227 Sum_probs=244.8
Q ss_pred CCcceeeccchHHHHHHHHHHHHHHH-HHcCCeEeecccccchhhHhHhcccccccccceE-------------------
Q psy10612 44 SPGSCFFQTKGAFIYNTLVEFIRSEY-RKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS------------------- 103 (426)
Q Consensus 44 ~~G~~~~lP~~~~~~~~i~~~i~~~~-~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~------------------- 103 (426)
.+|.|||.|.|..+..+|.+.||+.| -.-+..+|+.|.|.|.+++..|||.+.|.+-|.+
T Consensus 35 VsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvkD~ktGecfRADHLvk~~~~ 114 (599)
T KOG2298|consen 35 VSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVKDEKTGECFRADHLVKDAEE 114 (599)
T ss_pred cccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHHhcCccccceehhhHHHHHHHH
Confidence 69999999999999999999999999 4689999999999999999999999888777652
Q ss_pred -------------------------------------eee------------------------CCceEEEcCCCcHHHH
Q psy10612 104 -------------------------------------FDV------------------------ENETYALKPMNCPGHC 122 (426)
Q Consensus 104 -------------------------------------~~d------------------------~~~~~~LrP~~t~~i~ 122 (426)
+++ ++-..+|||+..++++
T Consensus 115 rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~F 194 (599)
T KOG2298|consen 115 RLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQF 194 (599)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCcccccccc
Confidence 000 0235689999999998
Q ss_pred HHHhhhhc-CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHH---c-C
Q psy10612 123 LIFDHRVR-SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI---F-G 196 (426)
Q Consensus 123 ~~~~~~~~-~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~---l-g 196 (426)
-.|..... +...||+.-.|||+.||+|.++ |.||.|+|||+|+++|-|..|. .++.-+..+...-...+.+ + |
T Consensus 195 lNFkrlle~N~~KlPFA~AqiG~~fRNEISp-RsGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~~l~l~~~~~q~~g 273 (599)
T KOG2298|consen 195 LNFKRLLEFNQGKLPFASAQIGKSFRNEISP-RSGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAEKLRLFPRDKQLSG 273 (599)
T ss_pred ccHHHHHHhcCCCCcchHHHhchHhhhccCc-ccCceeEEEeehHHhhccCCCCCCCChhhhhhhhhhhhhcchhhhhcc
Confidence 88876532 3468999999999999999999 7999999999999999999986 4443333222111111111 0 0
Q ss_pred Ce-EEEEEe---------cCCCc-----------cCCCchhHHHHHHHHHHhhcc-------------C------CC---
Q psy10612 197 FT-FNLRLS---------TRPEK-----------YLGELEVWNKAEKQLEASLNS-------------F------GE--- 233 (426)
Q Consensus 197 i~-~~i~~~---------~~~~~-----------~~G~~~~~~~~~~~l~~~l~~-------------~------~~--- 233 (426)
-. .++.++ +-..+ .+|.+..+-..+..+.+.+.. + |.
T Consensus 274 ~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYGWIEcVG~ADR 353 (599)
T KOG2298|consen 274 QSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYGWIECVGCADR 353 (599)
T ss_pred chhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccCcEEEeeccch
Confidence 00 001110 00000 023322111111111111100 0 00
Q ss_pred -CceeC-CC---------CCccccCc-cceeeec----ccCCce---------------eeeeeeeeecCC--eEEeEEE
Q psy10612 234 -PWTEN-PG---------DGAFYGPK-IDITITD----ALKRPH---------------QCATIQLDFQLP--IRFNLAY 280 (426)
Q Consensus 234 -~~~~~-~~---------~~~~~~p~-~~~~~~~----~~~~~~---------------~~~~~~l~~~~~--~~~~~~~ 280 (426)
.|.+. .. ...+-.|+ ++..... .+|..+ ++........++ ..+.+..
T Consensus 354 s~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~~~~~v 433 (599)
T KOG2298|consen 354 AAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGLLHMYV 433 (599)
T ss_pred hheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCcEEEEE
Confidence 00000 00 00001121 0000000 111100 000000000000 1111111
Q ss_pred eC------CCCccccCEEE-------ecccccchHHHHHHHHHhc----------CCCCCCCCCCceEEEEeCCC--ChH
Q psy10612 281 VN------EKGEKNRPVMI-------HRAILGSVERMVAILTESY----------AGKWPFWISPRQGIVIPVAE--PFN 335 (426)
Q Consensus 281 ~~------~~~~y~~~v~~-------~~~~~GgleRll~~l~e~~----------g~~~p~~~ap~~V~Vi~~~~--~~~ 335 (426)
+. ....++..+.+ -..++| +-|+++.|.|+. -+.+|+.+||++|.|.|++. +..
T Consensus 434 ~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfG-iGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~ 512 (599)
T KOG2298|consen 434 VNLSKLHVRIKRKTKVPHVREVNPDVIEPSFG-IGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFR 512 (599)
T ss_pred EecccceeeeeeeeeeeeEEeecCCcccccch-hhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHH
Confidence 10 00112222211 134576 999999999962 15789999999999999975 678
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHH
Q psy10612 336 EYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKL 415 (426)
Q Consensus 336 ~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~ 415 (426)
+.+..|.+.|+++||.+-+|+ +..++|+++...|.+|+||-|+|..+.+++++||+|+|+|..|..++++++...|.++
T Consensus 513 pv~~~ls~~L~~~gis~kvdd-s~~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s~v~~~ 591 (599)
T KOG2298|consen 513 PVCQGLSNELTENGISVKVDD-SSSSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKSFLIKY 591 (599)
T ss_pred HHHHHHHHHHHhCCCeEEecC-CCCcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999 6999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccc
Q psy10612 416 KENRTL 421 (426)
Q Consensus 416 ~~~~~~ 421 (426)
+.++++
T Consensus 592 ~~g~~~ 597 (599)
T KOG2298|consen 592 ISGAKN 597 (599)
T ss_pred hccccc
Confidence 988654
No 47
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.97 E-value=8.4e-30 Score=228.86 Aligned_cols=149 Identities=38% Similarity=0.748 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHH-HcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcC-cC
Q psy10612 57 IYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRS-WR 133 (426)
Q Consensus 57 ~~~~i~~~i~~~~~-~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~-~~ 133 (426)
++++|++++++.+. ++||++|.||+|.+.++|.++|+++.+.++||.+++. +++++||||+|++++.++++...+ ++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 57899999999999 9999999999999999999999999999999999997 567999999999999999999888 89
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCC-eEEEEEecC
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF-TFNLRLSTR 206 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi-~~~i~~~~~ 206 (426)
+||+++|++|+|||+|.++ .+|+.|+|||+|.|+++||.++++..++..+++.+.++++.||| ++++..+++
T Consensus 81 ~LP~~~~~~g~~fR~E~~~-~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~ 153 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARP-TRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSS 153 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSS-BSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEET
T ss_pred cCCeEEeeccccccccccc-ccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCC
Confidence 9999999999999999866 68999999999999999999988888888899999999999999 899998776
No 48
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-28 Score=242.96 Aligned_cols=281 Identities=21% Similarity=0.326 Sum_probs=216.5
Q ss_pred ccccCCCCCCCCCC-----------CCC-ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHH
Q psy10612 8 LVLPECGDSNRMMP-----------ISF-VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRK 71 (426)
Q Consensus 8 ~~~~~~~~~~~~~~-----------~~~-~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~ 71 (426)
+-||++.|+.++.. +++ +.+|.+|++..|+.++.. .+++++.+.+.++++.++|.+++.+...+
T Consensus 111 ~~VPvg~de~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~ 190 (429)
T COG0172 111 ESVPVGKDEDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTK 190 (429)
T ss_pred cccCcCCCcccceEEEEEecCccccccCCcchHHHHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 45788888877642 233 579999999999987753 37889999999999999999999999999
Q ss_pred cCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC
Q psy10612 72 RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS 151 (426)
Q Consensus 72 ~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~ 151 (426)
.||+++.+|.|.+.+.+..+|+++.|.++||++.+. .++|.||+|+|++.++++++....+||++++.+++|||.|.+
T Consensus 191 ~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~--~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAG 268 (429)
T COG0172 191 HGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP--DLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAG 268 (429)
T ss_pred cCceEeeCceeecHHHhhccCCCCCCcccceEecCC--CEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccc
Confidence 999999999999999999999999999999999864 899999999999999999988878899999999999999986
Q ss_pred C---CCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEEE-ecCCCccCCCchhHHHHHHHHHHh
Q psy10612 152 G---ALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRL-STRPEKYLGELEVWNKAEKQLEAS 227 (426)
Q Consensus 152 ~---~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~~-~~~~~~~~G~~~~~~~~~~~l~~~ 227 (426)
. ..+||.|++||.+.++..|+.|++++.+...|+..+.++++.|+|||+++. ++ +.+|.+..
T Consensus 269 s~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lct---GDlgf~a~----------- 334 (429)
T COG0172 269 SAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCT---GDLGFSAA----------- 334 (429)
T ss_pred cccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeecc---CCcCCccc-----------
Confidence 5 268999999999999999999999999999999999999999999986664 55 45554431
Q ss_pred hccCCCCcee-CCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCCCCccccCE-EEecccccchHHHH
Q psy10612 228 LNSFGEPWTE-NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPV-MIHRAILGSVERMV 305 (426)
Q Consensus 228 l~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v-~~~~~~~GgleRll 305 (426)
...++++ .|+...+ ..-.+|++. .||+ +.+++++|.+........| .+.++++. +.|++
T Consensus 335 ---kkYDlEvWlP~q~~y-------------rEisScSnc-~DfQ-aRR~~~Ryr~~~~~k~~~vhTLNGsglA-~~R~l 395 (429)
T COG0172 335 ---KKYDLEVWLPGQNKY-------------REISSCSNC-TDFQ-ARRLNIRYRDKEEGKREFVHTLNGSGLA-VGRTL 395 (429)
T ss_pred ---CceeEEEEecCCCCc-------------eeeeeeecc-ccHH-HHHHhcccccccCCCcEEEEeccchHHH-HHHHH
Confidence 0022221 2222111 111233333 2454 6778888854322112233 23345554 99999
Q ss_pred HHHHHhc----C-CCCCCCCCCc
Q psy10612 306 AILTESY----A-GKWPFWISPR 323 (426)
Q Consensus 306 ~~l~e~~----g-~~~p~~~ap~ 323 (426)
.+++|++ | +..|..+.||
T Consensus 396 ~AilENyq~~dG~v~IPevL~~y 418 (429)
T COG0172 396 VAILENYQQEDGSVKIPEVLRPY 418 (429)
T ss_pred HHHHHcccCCCCCeeccHHHHhh
Confidence 9999975 2 4456655554
No 49
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.95 E-value=7.6e-28 Score=228.80 Aligned_cols=159 Identities=22% Similarity=0.247 Sum_probs=137.1
Q ss_pred HHHHHhcCCcccc----cCCCcceeeccchHHHHHHHHHHHHHHHHHcC--CeEeecccccchhhHhHh-cccccccccc
Q psy10612 29 RKIGREQELFFFH----ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRG--FQEVVSPNVYNVKLWQTS-GHWAHYSENM 101 (426)
Q Consensus 29 ~~l~~~~~l~~~~----~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G--~~~i~tP~l~~~~l~~~s-g~~~~~~~e~ 101 (426)
.+|++++|+++.. ..++|++||+|.|++++++|+++|++.+.++| |++|+||++++.++|..+ |+++
T Consensus 2 ~~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d------ 75 (254)
T cd00774 2 VELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE------ 75 (254)
T ss_pred HhHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC------
Confidence 3688888976553 23799999999999999999999999999996 999999999999777643 3321
Q ss_pred eEeeeCCceEEEcCCCcHHHHHHHhhhhcCc-CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHH
Q psy10612 102 FSFDVENETYALKPMNCPGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDE 180 (426)
Q Consensus 102 y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~-~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e 180 (426)
+++++++|||++|+.++..+++...++ ++||+++||+|+|||+|.+| +.||+|+|||+|+|+|+||.++++..+
T Consensus 76 ----~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~-~~gl~R~ReF~q~d~~~f~~~~~~~e~ 150 (254)
T cd00774 76 ----SGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISP-RNGLFRVREFTQAEIEFFVDPEKSHPW 150 (254)
T ss_pred ----CCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCc-ccceeeeccchhhheeeeECCCCchHH
Confidence 235689999999988777777665555 49999999999999999999 599999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHcCCe
Q psy10612 181 IVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 181 ~~~~~~~~~~il~~lgi~ 198 (426)
+..+++.+.++++++|++
T Consensus 151 ~~~v~~~~~~~l~~~G~~ 168 (254)
T cd00774 151 FDYWADQRLKWLPKFAQS 168 (254)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999984
No 50
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.93 E-value=9.3e-26 Score=221.23 Aligned_cols=150 Identities=21% Similarity=0.333 Sum_probs=136.2
Q ss_pred eeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHh
Q psy10612 48 CFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFD 126 (426)
Q Consensus 48 ~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~ 126 (426)
+|++|.++.+++.|++.+++.++++||.+|.||+|++.++|..+++ ...++||+|.|+ |+.++||||.|+|++|+++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~ 78 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVS 78 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCCCCEEeecCcCcHHHHHHHH
Confidence 4899999999999999999999999999999999999999987766 367899999997 8999999999999999988
Q ss_pred hhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe-EEEEEe
Q psy10612 127 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLS 204 (426)
Q Consensus 127 ~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~-~~i~~~ 204 (426)
+... ..++|+|+||+|+|||+|.++. +|.|||+|+|+|+||.++ .+|+|++.++ .++++.+|++ +.+.++
T Consensus 79 ~~~~-~~~~p~r~~y~g~VfR~~~~~~----gr~re~~Q~g~Eiig~~~~~adaEvi~l~---~~~l~~lg~~~~~i~l~ 150 (314)
T TIGR00443 79 TRLR-DRPLPLRLCYAGNVFRTNESGA----GRSREFTQAGVELIGAGGPAADAEVIALL---IEALKALGLKDFKIELG 150 (314)
T ss_pred Hhcc-cCCCCeEEEEeceEeecCCCcC----CCcccccccceEEeCCCCchhHHHHHHHH---HHHHHHcCCCCeEEEeC
Confidence 7544 3568999999999999999887 999999999999999988 8999987665 9999999995 999998
Q ss_pred cCC
Q psy10612 205 TRP 207 (426)
Q Consensus 205 ~~~ 207 (426)
|+.
T Consensus 151 ~~~ 153 (314)
T TIGR00443 151 HVG 153 (314)
T ss_pred cHH
Confidence 863
No 51
>KOG2509|consensus
Probab=99.93 E-value=2.2e-25 Score=216.12 Aligned_cols=284 Identities=16% Similarity=0.291 Sum_probs=214.3
Q ss_pred cccccCCCCCCCC--------CCCCCC-hhHHHHHHhcCCccccc--CCCcc--eeeccchHHHHHHHHHHHHHHHHHcC
Q psy10612 7 SLVLPECGDSNRM--------MPISFV-LWNRKIGREQELFFFHE--LSPGS--CFFQTKGAFIYNTLVEFIRSEYRKRG 73 (426)
Q Consensus 7 ~~~~~~~~~~~~~--------~~~~~~-~~h~~l~~~~~l~~~~~--~~~G~--~~~lP~~~~~~~~i~~~i~~~~~~~G 73 (426)
.|.||+++|+..+ ..+.+. ..|..|++..|++.... ..+|. |++...++.+.++|+++..+.+.+.|
T Consensus 124 hpsVpv~~ee~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kG 203 (455)
T KOG2509|consen 124 HPSVPVSNEEQANVVQRVGGPLEFEFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKG 203 (455)
T ss_pred CCCCCCCchhhhhHHHHhcCCcccccccccHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcC
Confidence 3678998887643 334444 46689999999766643 24554 55668899999999999999999999
Q ss_pred CeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC-
Q psy10612 74 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG- 152 (426)
Q Consensus 74 ~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~- 152 (426)
|.++.||.|.+.+++.++|....+.+++|+..|++.+.+|..|++.|++.++.++.....+||+|+...++|||.|.+.
T Consensus 204 y~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~ 283 (455)
T KOG2509|consen 204 YTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSH 283 (455)
T ss_pred CccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhc
Confidence 9999999999999999999888899999999998889999999999999999988777789999999999999999832
Q ss_pred --CCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhcc
Q psy10612 153 --ALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNS 230 (426)
Q Consensus 153 --~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~ 230 (426)
..+||.|+|||+..++.+++.|+++.+++..|+++..+++.+|||+|++.- -+++.+|.+....
T Consensus 284 G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~--m~S~eLg~aAakK------------ 349 (455)
T KOG2509|consen 284 GKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVLN--MPSGELGAAAAKK------------ 349 (455)
T ss_pred ccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhCCceeEec--CCchhhCcHHHhh------------
Confidence 378999999999999999999998888899999999999999999987652 2225566543210
Q ss_pred CCCCce-eCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeC---CCCccccCE-EEecccccchHHHH
Q psy10612 231 FGEPWT-ENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVN---EKGEKNRPV-MIHRAILGSVERMV 305 (426)
Q Consensus 231 ~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~y~~~v-~~~~~~~GgleRll 305 (426)
.+++ +.||.+.| +.-.+|++. .||+ +.+++++|.. .++. +..| .++.+.+. +.|+|
T Consensus 350 --yDiEAWmPgrg~y-------------gEl~ScSNC-TDyQ-SRRL~IRy~~~k~~~~~-~~yvHtLN~TacA-~~R~l 410 (455)
T KOG2509|consen 350 --YDIEAWMPGRGAY-------------GELVSCSNC-TDYQ-SRRLGIRYGQKKTNDGE-KKYVHTLNGTACA-TPRAL 410 (455)
T ss_pred --cchhhhcCccccc-------------ccccccccc-hhHH-HhhhhhhcccccccCCc-cceeeecchhhHh-hhHHH
Confidence 2222 22332221 111123322 2444 4556666652 3332 2333 23345555 99999
Q ss_pred HHHHHhc----CCCCCCCCCCc
Q psy10612 306 AILTESY----AGKWPFWISPR 323 (426)
Q Consensus 306 ~~l~e~~----g~~~p~~~ap~ 323 (426)
.+|+|++ |+..|..+.|+
T Consensus 411 ~aiLEnyQ~edGi~VPe~Lr~y 432 (455)
T KOG2509|consen 411 CAILENYQTEDGIEVPEVLRPY 432 (455)
T ss_pred HHhHhhccCCCCccCCHhHHhh
Confidence 9999986 77888877776
No 52
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.93 E-value=5e-25 Score=210.76 Aligned_cols=144 Identities=19% Similarity=0.324 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
++++++|++.+++.|.++||++|.||+|++.++|..++ ++...++||+|.|+ |+.++||||.|+|++|++++...+ .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-L 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-C
Confidence 57899999999999999999999999999999998765 45678999999987 889999999999999999876544 5
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe-EEEEEecCC
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~ 207 (426)
++|+|+||+|+|||+|.++. +|.|||+|+|+|+||.++ .+|+|++.++ .++++.+|++ +.+.++|+.
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~----g~~re~~Q~g~Eiig~~~~~~daE~i~l~---~~~l~~lg~~~~~i~l~~~~ 148 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQK----GRYREFYQVGVEIIGSDSPLADAEVIALA---VEILEALGLKDFQIKINHRG 148 (261)
T ss_pred CCCeEEEEEcCEEecCCCCC----CCccceEEeceeeeCCCChHHHHHHHHHH---HHHHHHcCCCceEEEECCHH
Confidence 68999999999999999886 899999999999999987 7898887664 9999999996 999998863
No 53
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.93 E-value=3.3e-25 Score=213.00 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=127.3
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPG 120 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~ 120 (426)
+.|+|++|++|+.+..+++|++.++++|+++||++|.||+||+.+++.. ...++||+|.|+ |+.++||||.|+|
T Consensus 6 ~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~g~~l~LRpD~T~~ 80 (281)
T PRK12293 6 EIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEKNHQISLRADSTLD 80 (281)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCCCCEEEECCcCCHH
Confidence 4689999999999999999999999999999999999999999999843 236899999997 8899999999999
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEE
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFN 200 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~ 200 (426)
++|++++.... ..+|+|+||+|+|||+|. |||+|+|+|++|.++. +|++.+ +.+++++||+++.
T Consensus 81 iaR~~a~~~~~-~~~p~r~~Y~g~vfR~~~----------rEf~Q~GvEliG~~~~--~Evi~l---a~~~l~~lgl~~~ 144 (281)
T PRK12293 81 VVRIVTKRLGR-STEHKKWFYIQPVFRYPS----------NEIYQIGAELIGEEDL--SEILNI---AAEIFEELELEPI 144 (281)
T ss_pred HHHHHHHhccc-CCCceeEEEeccEEecCC----------CcccccCeEeeCCCCH--HHHHHH---HHHHHHHcCCCCE
Confidence 99999865432 367999999999999873 7999999999999774 466655 5999999999877
Q ss_pred EEEecCC
Q psy10612 201 LRLSTRP 207 (426)
Q Consensus 201 i~~~~~~ 207 (426)
+.++|+.
T Consensus 145 i~ig~~~ 151 (281)
T PRK12293 145 LQISNIK 151 (281)
T ss_pred EEECCHH
Confidence 8998864
No 54
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.92 E-value=1.2e-24 Score=213.48 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=127.5
Q ss_pred cceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHH
Q psy10612 46 GSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLI 124 (426)
Q Consensus 46 G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~ 124 (426)
|++||+|..++.+++|++.++++|+++||++|.||+|++.+++...++.+ .+++|+|.|+ |+.++||||.|+|++|+
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~G~~l~LR~D~T~~iaR~ 78 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRSGRVLALRPDLTVPIARY 78 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTTSSEEEE-SSSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecCCcEeccCCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999998655433 4589999998 89999999999999999
Q ss_pred HhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHH-HcCCe-EEE
Q psy10612 125 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYS-IFGFT-FNL 201 (426)
Q Consensus 125 ~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~-~lgi~-~~i 201 (426)
++.... ...|.|+||+|+|||++.++. +|.|||+|+|+|+||.++ .+|+|++.++ .++++ .+|++ +.+
T Consensus 79 ~a~~~~--~~~~~r~~y~g~vfR~~~~~~----g~~re~~Q~g~Eiig~~~~~~daEvi~l~---~e~l~~~l~~~~~~i 149 (311)
T PF13393_consen 79 VARNLN--LPRPKRYYYIGPVFRYERPGK----GRPREFYQCGFEIIGSSSLEADAEVIKLA---DEILDRELGLENFTI 149 (311)
T ss_dssp HHHCCG--SSSSEEEEEEEEEEEEETTTT----TBESEEEEEEEEEESSSSHHHHHHHHHHH---HHHHHHHHTTTSEEE
T ss_pred HHHhcC--cCCCceEEEEcceeeccccCC----CCCceeEEEEEEEECCCCHHHHHHHHHHH---HHHHHhhcCCCCcEE
Confidence 987643 467999999999999998887 899999999999999998 8999998775 99997 99995 999
Q ss_pred EEecC
Q psy10612 202 RLSTR 206 (426)
Q Consensus 202 ~~~~~ 206 (426)
.++|.
T Consensus 150 ~i~h~ 154 (311)
T PF13393_consen 150 RINHT 154 (311)
T ss_dssp EEEEH
T ss_pred EEcCc
Confidence 99885
No 55
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.88 E-value=2.5e-22 Score=200.28 Aligned_cols=136 Identities=17% Similarity=0.200 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELP 136 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP 136 (426)
.++|.+.+++.|+++||.+|.||+||+.++|....+ +...++||+|.|+ |+.++||||.|+|++|+++.+ . ...|
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g-~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~--~-~~~p 82 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSG-EDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIAT--A-GGEP 82 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccC-chhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHc--C-CCCC
Confidence 458999999999999999999999999999975332 2346789999998 899999999999999987654 2 3579
Q ss_pred ceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc-c-chHHHHHHHHHHHHHHHHHcCCe-EEEEEecCC
Q psy10612 137 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-E-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207 (426)
Q Consensus 137 ~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~-~-~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~ 207 (426)
+|+||+|+|||+| . +|+|||+|+|+|+||.. . .+|+|++.++ .++++.+|+. +.+.++|+.
T Consensus 83 ~R~~Y~g~VfR~~---~----gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~---~~~L~~lgl~~~~i~ig~~~ 146 (373)
T PRK12295 83 ARYAYLGEVFRQR---R----DRASEFLQAGIESFGRADPAAADAEVLALA---LEALAALGPGDLEVRLGDVG 146 (373)
T ss_pred eEEEEEccEEECC---C----CCCCcceEeeEEeeCCCCCccchHHHHHHH---HHHHHHcCCCceEEEeCCHH
Confidence 9999999999998 3 79999999999999974 4 7899998775 9999999996 999999864
No 56
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.86 E-value=6.3e-22 Score=194.46 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=136.3
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPG 120 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~ 120 (426)
..|.|++|.+|..+....+|.+.+++.|.++||+.|+||+||+.+.|....+ +.....+|++.|. |+.+|||||.|+|
T Consensus 4 ~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g-~~l~~~~f~l~d~~g~~l~LRpD~T~p 82 (390)
T COG3705 4 QLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAG-EDLRRRLFKLEDETGGRLGLRPDFTIP 82 (390)
T ss_pred cCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccc-hhhhhhheEEecCCCCeEEecccccHH
Confidence 4689999999999999999999999999999999999999999999986522 3456889999998 8889999999999
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe-
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 198 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~- 198 (426)
++|.+++...+ .|.|++|.|+|||....-. +|..||+|.|+|.+|.++ .+|+|++.+. ...++.+|+.
T Consensus 83 VaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~~~~----g~~~Ef~QaGiEllG~~~~~ADaEvi~la---~~~L~~~gl~~ 152 (390)
T COG3705 83 VARIHATLLAG---TPLRLSYAGKVFRAREGRH----GRRAEFLQAGIELLGDDSAAADAEVIALA---LAALKALGLAD 152 (390)
T ss_pred HHHHHHHhcCC---CCceeeecchhhhcchhcc----CcccchhhhhhHHhCCCcchhhHHHHHHH---HHHHHHcCCcC
Confidence 99999886543 7999999999999873333 677799999999999988 9999998664 9999999996
Q ss_pred EEEEEecC
Q psy10612 199 FNLRLSTR 206 (426)
Q Consensus 199 ~~i~~~~~ 206 (426)
+++.+++.
T Consensus 153 ~~l~LG~~ 160 (390)
T COG3705 153 LKLELGHA 160 (390)
T ss_pred eEEEeccH
Confidence 99999774
No 57
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.82 E-value=8.3e-20 Score=167.48 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=99.9
Q ss_pred CCCCCCCCCCceEEEEeCCCC------hHHHHHHHHHHHHHCCCeEEEcCCCCC-CHHHHHHHHHHhCCcEEEEEecCcc
Q psy10612 313 AGKWPFWISPRQGIVIPVAEP------FNEYADQVKNKIFAAGFMCDADLDSSD-TLNKKIRNAQISQYNFIMVVGEKEK 385 (426)
Q Consensus 313 g~~~p~~~ap~~V~Vi~~~~~------~~~~a~~ia~~Lr~~Gi~v~~d~~~~~-~lgkk~~~A~~~gip~~iiiG~~E~ 385 (426)
|++||++++|+||+|+|++.. ..+++.+|++.|+++|++|++|++ +. ++|+||++|++.|+|++|+||++|+
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r-~~~s~g~K~~~ae~~GvP~~I~IG~~El 79 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDR-DNYTPGWKFNDWELKGVPLRIEIGPRDL 79 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECC-CCCCHhHHHHHHHhCCCCEEEEECcchh
Confidence 678999999999999999765 788999999999999999999994 66 9999999999999999999999999
Q ss_pred CCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 386 SSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 386 ~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
++|+|+|++|+++++..++++++++.+.++++..+
T Consensus 80 e~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i~ 114 (202)
T cd00862 80 EKNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQ 114 (202)
T ss_pred hCCEEEEEEecCCcceEEEHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777654
No 58
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.82 E-value=1.4e-19 Score=153.54 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=96.6
Q ss_pred CCCCCCCCCCceEEEEeCCC---ChHHHHHHHHHHHHHCCCeEEEcCCCCC---CHHHHHHHHHHhCCcEEEEEecCccC
Q psy10612 313 AGKWPFWISPRQGIVIPVAE---PFNEYADQVKNKIFAAGFMCDADLDSSD---TLNKKIRNAQISQYNFIMVVGEKEKS 386 (426)
Q Consensus 313 g~~~p~~~ap~~V~Vi~~~~---~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~---~lgkk~~~A~~~gip~~iiiG~~E~~ 386 (426)
|++||+.+||++|+|+|++. ...++|.+|++.|+++|++|.+|++ .. ++|+||++|+.+|+||+|+||++.++
T Consensus 18 Gl~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r-~~~~~~~G~k~~~~dliGiP~~I~IG~~~l~ 96 (128)
T cd02426 18 VLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYL-ETQHSSLEQLLDKYDEMGVLFTLLISEQTLE 96 (128)
T ss_pred EEECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccC-cccccCHHHHHHhhhhcCCCEEEEECCCccc
Confidence 78999999999999999942 5678899999999999999999984 54 89999999999999999999999999
Q ss_pred CCeEEEEEccCCeeeeecHHHHHHHHHHHHh
Q psy10612 387 SNTVNVRTRDNIVHGEFSVDDVITRFGKLKE 417 (426)
Q Consensus 387 ~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~ 417 (426)
+|+|++++|+|++++.++++++.+.+.++++
T Consensus 97 ~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 97 NGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred CCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 9999999999999999999999999987764
No 59
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.80 E-value=4.4e-19 Score=149.69 Aligned_cols=101 Identities=18% Similarity=0.297 Sum_probs=95.5
Q ss_pred CCCCCCCCCceEEEEeCC--CChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEE
Q psy10612 314 GKWPFWISPRQGIVIPVA--EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVN 391 (426)
Q Consensus 314 ~~~p~~~ap~~V~Vi~~~--~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~ 391 (426)
+.||+|++|++|+|++.+ ++...+|.++++.||++|++|++|+ + .++++|+++|++.|+||++|||++|.++|+|+
T Consensus 18 ~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~-~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~ 95 (121)
T cd00858 18 LRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S-GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVT 95 (121)
T ss_pred EEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C-CCHHHHHHHhHhcCCCEEEEECcCchhCCEEE
Confidence 469999999999999999 7788899999999999999999999 6 89999999999999999999999999999999
Q ss_pred EEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 392 VRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 392 vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
+|++.++++.+++++++.+.+.+++
T Consensus 96 lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 96 IRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred EEECCCCceEEEEHHHHHHHHHHHh
Confidence 9999999999999999998887654
No 60
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.77 E-value=2.2e-18 Score=138.78 Aligned_cols=90 Identities=33% Similarity=0.512 Sum_probs=86.9
Q ss_pred eEEEEeCCC---ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCee
Q psy10612 324 QGIVIPVAE---PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVH 400 (426)
Q Consensus 324 ~V~Vi~~~~---~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q 400 (426)
||+|+|++. +..++|.++++.||++|+++++|+ .+.++++||++|++.|+||+||||++|.++|+|+||+|+++++
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~ 79 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-SDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQ 79 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-SSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-CCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcE
Confidence 689999999 889999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHH
Q psy10612 401 GEFSVDDVITRFGK 414 (426)
Q Consensus 401 ~~v~~~el~~~i~~ 414 (426)
..++++++.++|++
T Consensus 80 ~~v~~~el~~~l~~ 93 (94)
T PF03129_consen 80 ETVSLEELIEYLKE 93 (94)
T ss_dssp EEEECCHHHHHHHH
T ss_pred EEEEHHHHHHHHhh
Confidence 99999999999876
No 61
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.74 E-value=1.9e-17 Score=161.29 Aligned_cols=113 Identities=25% Similarity=0.454 Sum_probs=104.4
Q ss_pred hHHHHHHHHHhc----CCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcE
Q psy10612 301 VERMVAILTESY----AGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNF 376 (426)
Q Consensus 301 leRll~~l~e~~----g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~ 376 (426)
++|++.+++.+. -+.||+|++|.+|+|++++++..++|.++++.||++|++|++|+ +..++|+|+++|++.|+|+
T Consensus 249 ~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl-~srSLgKQiK~AdK~GaPf 327 (387)
T PRK14938 249 VGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDD-LDDSLGNKIRRAGTEWIPF 327 (387)
T ss_pred ecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHcCCCE
Confidence 889888776541 37899999999999999998888999999999999999999998 5889999999999999999
Q ss_pred EEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHH
Q psy10612 377 IMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGK 414 (426)
Q Consensus 377 ~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~ 414 (426)
+||||++|+++|+|+||++++++|..++++++.+.+++
T Consensus 328 vIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lkk 365 (387)
T PRK14938 328 VIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIKR 365 (387)
T ss_pred EEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHHh
Confidence 99999999999999999999999999999999888764
No 62
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.73 E-value=1.6e-17 Score=133.61 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=84.8
Q ss_pred CceEEEEeCCC---ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCC
Q psy10612 322 PRQGIVIPVAE---PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNI 398 (426)
Q Consensus 322 p~~V~Vi~~~~---~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~ 398 (426)
|++|+|+|+.. +..++|.+++..||++|++|++|+ +..++++++++|++.|+||++|||++|+++++|+||++.++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~-~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~ 79 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD-RNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTG 79 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCC
Confidence 78999999987 577899999999999999999998 57899999999999999999999999999999999999999
Q ss_pred eeeeecHHHHHHHH
Q psy10612 399 VHGEFSVDDVITRF 412 (426)
Q Consensus 399 ~q~~v~~~el~~~i 412 (426)
++..++++++.+.+
T Consensus 80 ~~~~~~~~~~~~~l 93 (94)
T cd00861 80 EKEEISIDELLEFL 93 (94)
T ss_pred cceEEeHHHHHHhh
Confidence 99999999997765
No 63
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.73 E-value=1e-16 Score=147.73 Aligned_cols=206 Identities=25% Similarity=0.359 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELP 136 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP 136 (426)
++++++.+++.+...||++|.||.|++.+.+...+.. .+.++.+.+- ++..+|||+.++++.++++.+. +++|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~ 75 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHE---PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLP 75 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCcc---HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccCC
Confidence 6789999999999999999999999999888765543 2344444443 6789999999999999998765 5789
Q ss_pred ceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe--EEEEEecCCCccCCCc
Q psy10612 137 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT--FNLRLSTRPEKYLGEL 214 (426)
Q Consensus 137 ~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~--~~i~~~~~~~~~~G~~ 214 (426)
+|+|++|+|||.|.... ++.|.+||+|.+++++|.+.+...++..+...+.++++.+|++ +.+.....+ .+.
T Consensus 76 ~~lfeig~vfr~e~~~~--~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~-~~~--- 149 (211)
T cd00768 76 LRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPG-EFS--- 149 (211)
T ss_pred EEEEEEcceeecCCCcc--ccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCch-hhc---
Confidence 99999999999987542 3578999999999999987632233555567779999999973 444322210 000
Q ss_pred hhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceeeeeeeee-ecCCeEEeEEEeCCCCccccCEEE
Q psy10612 215 EVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLD-FQLPIRFNLAYVNEKGEKNRPVMI 293 (426)
Q Consensus 215 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~y~~~v~~ 293 (426)
. +..++..++.+.+..++...++.++.. -.....++++|.+..+.+..|+++
T Consensus 150 --------------~-------------~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~ 202 (211)
T cd00768 150 --------------P-------------GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTI 202 (211)
T ss_pred --------------c-------------ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCceee
Confidence 0 012233334343333444444444321 222345788888877777778777
Q ss_pred ecccccchHHH
Q psy10612 294 HRAILGSVERM 304 (426)
Q Consensus 294 ~~~~~GgleRl 304 (426)
+++ + |+||+
T Consensus 203 ~~~-~-~~~R~ 211 (211)
T cd00768 203 GFG-L-GLERL 211 (211)
T ss_pred cCc-c-CccCC
Confidence 665 5 49985
No 64
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.69 E-value=2.2e-16 Score=156.51 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhccc--ccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHW--AHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~--~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
.-+..+++.+++.|..+||++|.||+|++.+.+...+.. ..+.++||.+. +..+|||+.|++++++++.+.. ..
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e---e~lvLRPdLTPsLaR~La~N~~-~l 315 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPNLYNYLRKLDR-AL 315 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec---CceEecccCHHHHHHHHHHhhh-hc
Confidence 457899999999999999999999999988888765543 23567899873 4799999999999998875422 24
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCeEEEE
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFTFNLR 202 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~~~i~ 202 (426)
.+|+|+|++|+|||+|.++. +|+|||+|++++++|.+. .+|.+ . ++..+|+.||++|.+.
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~----thlREF~QL~~eIaG~~atfaDle--a---lL~e~Lr~LGIdfeit 376 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGK----EHLEEFTMLNFCQMGSGCTRENLE--A---IIKDFLDHLEIDFEIV 376 (453)
T ss_pred cCCeeEEEEcCeEecCCCCC----CCcCeEEEEEEEEECCCCCHHHHH--H---HHHHHHHHCCCceEEe
Confidence 68999999999999999887 899999999999999876 55444 2 3489999999987664
No 65
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.68 E-value=2.8e-16 Score=125.34 Aligned_cols=90 Identities=42% Similarity=0.672 Sum_probs=85.2
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeee
Q psy10612 322 PRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHG 401 (426)
Q Consensus 322 p~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~ 401 (426)
|++|+|++.++...++|.++++.||+.|++|++|+ +..++++|+++|++.|+|++++||++|..++.++++++.++++.
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~-~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~ 79 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDL-RNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLG 79 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccc
Confidence 78999999998889999999999999999999998 58999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHH
Q psy10612 402 EFSVDDVITRF 412 (426)
Q Consensus 402 ~v~~~el~~~i 412 (426)
.++++++++.+
T Consensus 80 ~~~~~~~~~~~ 90 (91)
T cd00860 80 SMSLDEFIEKL 90 (91)
T ss_pred eEcHHHHHHHh
Confidence 99999887655
No 66
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.68 E-value=3.4e-16 Score=149.32 Aligned_cols=133 Identities=11% Similarity=-0.029 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
..-++.|++.+++.|+++||++|.||+||+.+++..++. +.....++.+.|. |+.++||||.|+|++|+++...
T Consensus 7 ~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~-~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~---- 81 (272)
T PRK12294 7 LIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHE-DLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP---- 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhcccc-chhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC----
Confidence 445788999999999999999999999999999843332 2222223445453 8999999999999999887532
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe-EE-EEEecC
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FN-LRLSTR 206 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~-~~-i~~~~~ 206 (426)
.-|.|+||+|+|||++. +|+|+|+|++|.+..++.|.+.+ +.+.++.+|.. +. +.++|.
T Consensus 82 ~~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~~~a~~e~l~l---a~~~l~~~g~~~~~~i~lGh~ 142 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE-----------AAVQVGIENYAPSLANVQQSFKL---FIQFIQQQLRDNVHFVVLGHY 142 (272)
T ss_pred CCCceEEEeccEeccCC-----------CcceeceEEECCCchhHHHHHHH---HHHHHHHhCCCCCcEEEeccH
Confidence 23669999999999873 37999999999554777777644 58889998664 43 677664
No 67
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.62 E-value=4.8e-15 Score=118.88 Aligned_cols=90 Identities=28% Similarity=0.433 Sum_probs=84.3
Q ss_pred CceEEEEeCCC---ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCC
Q psy10612 322 PRQGIVIPVAE---PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNI 398 (426)
Q Consensus 322 p~~V~Vi~~~~---~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~ 398 (426)
|++|+|+|.++ ...++|.+++..||+.|++|++|+ +..++++++++|++.|+||++++|++|+++++|+++++.++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~ 79 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTG 79 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCC
Confidence 67999999988 788999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred eeeeecHHHHHHHH
Q psy10612 399 VHGEFSVDDVITRF 412 (426)
Q Consensus 399 ~q~~v~~~el~~~i 412 (426)
++..++++++.+.+
T Consensus 80 ~~~~~~~~~~~~~i 93 (94)
T cd00738 80 ESETLHVDELPEFL 93 (94)
T ss_pred ceeEEEHHHHHhhc
Confidence 99999999887654
No 68
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.62 E-value=3.5e-15 Score=148.42 Aligned_cols=133 Identities=17% Similarity=0.308 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccc--cccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA--HYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 135 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~--~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~l 135 (426)
...|++.+++.|..+||+||.||.|.+.+.|...+++. .+.++||.+ ++..+|||+.++++++.++.+ ..+.++
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i---deel~LRpsLtPsLlr~la~n-~k~~~~ 281 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV---DKNFCLRPMLAPGLYNYLRKL-DRILPD 281 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee---CCceEehhhhHHHHHHHHHhh-hhcccC
Confidence 57899999999999999999999999999988776542 345678886 357999999999999987643 234578
Q ss_pred CceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEE
Q psy10612 136 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 202 (426)
Q Consensus 136 P~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~ 202 (426)
|+|+|++|+|||+|.++. .+++||+|++++++|... ...++. ..+.++|+.||++|.+.
T Consensus 282 P~RIFEIG~VFR~E~~g~----~hlrEf~Ql~~~iiGs~~-~f~dL~---~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 282 PIKIFEIGPCYRKESDGK----EHLEEFTMVNFCQMGSGC-TRENLE---NIIDDFLKHLGIDYEII 340 (417)
T ss_pred CeeEEEEeceEecCCCCC----CCcceEEEEEEEEeCCch-HHHHHH---HHHHHHHHHCCCCcEEe
Confidence 999999999999998776 799999999999998643 223333 44599999999987665
No 69
>PRK07080 hypothetical protein; Validated
Probab=99.53 E-value=7.2e-13 Score=126.02 Aligned_cols=255 Identities=14% Similarity=0.088 Sum_probs=163.9
Q ss_pred hHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee
Q psy10612 27 WNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV 106 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d 106 (426)
+.++=.-..|++ +.....|.|-..+.=-.+.+.|+..++..-...|+.++..|.+.+.+.|.++++.+.|...++.+..
T Consensus 20 ~~~~~l~~~g~~-~~~g~~g~ygrs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V~~ 98 (317)
T PRK07080 20 DFRDELFDAGLL-IPTGVDGLYGRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTVHS 98 (317)
T ss_pred hHHHHHHhcCce-eccCCCccccccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceeecC
Confidence 333333344663 4334577776655555566666666555555556999999999999999999999999888886421
Q ss_pred -------------------------CCceEEEcCCCcHHHHHHHhhh-hcCcCCCCceeeeeccccccCCCCCCCCCccc
Q psy10612 107 -------------------------ENETYALKPMNCPGHCLIFDHR-VRSWRELPLRMADFGVLHRNELSGALTGLTRV 160 (426)
Q Consensus 107 -------------------------~~~~~~LrP~~t~~i~~~~~~~-~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~ 160 (426)
+...++|.|..|.|+.-++... .... + -..+--.|.|||+|.+ +++-|+
T Consensus 99 ~~g~~~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~-~-g~~~dv~g~CFR~E~s---~dl~Rl 173 (317)
T PRK07080 99 FCGNEAEHRRLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPA-D-GRLVDVASYCFRHEPS---LDPARM 173 (317)
T ss_pred CCCCCHHHHHHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCC-C-CcEEEeeeeeeccCCC---CCcHHH
Confidence 0236999999999999887643 2221 2 1455566999999984 478999
Q ss_pred eeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCC
Q psy10612 161 RRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPG 240 (426)
Q Consensus 161 REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 240 (426)
.+|+|.++-.+|+++++.+--..-++.+..+.+.|||++++..++-| |.|......+ ..+... ..+++.
T Consensus 174 ~~F~mrE~V~iGt~e~v~~~r~~w~e~~~~l~~~LgL~~~ve~AnDP--FF~~~gk~~a----~~Qr~~--~lKfEl--- 242 (317)
T PRK07080 174 QLFRMREYVRIGTPEQIVAFRQSWIERGTAMADALGLPVEIDLANDP--FFGRGGKIVA----ASQREQ--NLKFEL--- 242 (317)
T ss_pred hheeeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCceeEeecCCc--cccccchhhh----hhhhhc--cceeEE---
Confidence 99999999999998866554455566778999999999999998765 3332211000 000000 011111
Q ss_pred CCccccCccceeeecccCCceeee--eeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCC
Q psy10612 241 DGAFYGPKIDITITDALKRPHQCA--TIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGK 315 (426)
Q Consensus 241 ~~~~~~p~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~ 315 (426)
+-| +.+. ++...|. |.+. -+++..|+++..++. +.+.+|.++| +|||..+|+.++|+.
T Consensus 243 ----~vp-----i~~~-~~~tA~~S~NyH~-dhFg~~f~I~~~~g~-----~ahTgCvGFG-lER~a~All~~hG~d 302 (317)
T PRK07080 243 ----LIP-----IYSD-APPTACMSFNYHM-DHFGLTWGIRTADGA-----VAHTGCVGFG-LERLALALFRHHGLD 302 (317)
T ss_pred ----EEe-----cCCC-CCceEEEEEehhh-hccccccCcccCCCC-----EeEEeeeecC-HHHHHHHHHHHhCCC
Confidence 000 1110 1112222 2222 234677777754332 3456788998 999999999999864
No 70
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.47 E-value=1.2e-13 Score=143.03 Aligned_cols=142 Identities=16% Similarity=0.218 Sum_probs=111.3
Q ss_pred CCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccch-------------------hhHhHhccc--c-------
Q psy10612 44 SPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-------------------KLWQTSGHW--A------- 95 (426)
Q Consensus 44 ~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~-------------------~l~~~sg~~--~------- 95 (426)
..| ++++|.....++.+.+.+++.|..+||++|.+|++|+. +.|..+... +
T Consensus 222 ~~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~ 300 (489)
T PRK04172 222 APP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVE 300 (489)
T ss_pred CCC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHH
Confidence 456 78999999999999999999999999999999999954 443322100 0
Q ss_pred cc------------cccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCcccee
Q psy10612 96 HY------------SENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRR 162 (426)
Q Consensus 96 ~~------------~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~RE 162 (426)
.+ ..-+|.++++ ++.++|||+.|++++|+++.. .+.|+|+|++|+|||+|.++. .|++|
T Consensus 301 ~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~----~~~p~rlFeiGrVFR~e~~d~----~~l~E 372 (489)
T PRK04172 301 RVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR----PEPPQKYFSIGRVFRPDTIDA----THLPE 372 (489)
T ss_pred HHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhc----CCCCeEEEEecceEcCCCCCc----ccCCc
Confidence 00 1125677666 678999999999999998762 356999999999999999886 78899
Q ss_pred EeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe
Q psy10612 163 FQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 163 F~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
|+|.++.++|.+- ...++. .++..+++.||++
T Consensus 373 f~ql~~~i~G~~~-~f~elk---g~l~~ll~~lGi~ 404 (489)
T PRK04172 373 FYQLEGIVMGEDV-SFRDLL---GILKEFYKRLGFE 404 (489)
T ss_pred hheEEEEEEeCCC-CHHHHH---HHHHHHHHHhCCc
Confidence 9999999999742 244444 4458999999985
No 71
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.38 E-value=3e-12 Score=101.35 Aligned_cols=88 Identities=20% Similarity=0.339 Sum_probs=81.4
Q ss_pred eEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeee
Q psy10612 324 QGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEF 403 (426)
Q Consensus 324 ~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v 403 (426)
+|+|++.++....+|.+++..||+.|++|+++. ...++++++++|++.|+|+++++|+++..+++++++++.++++..+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~-~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 81 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDY-GGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETV 81 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEec-CCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEE
Confidence 689999988888899999999999999999988 4679999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHH
Q psy10612 404 SVDDVITRF 412 (426)
Q Consensus 404 ~~~el~~~i 412 (426)
+++++.+.+
T Consensus 82 ~~~~~~~~~ 90 (91)
T cd00859 82 ALDELVEEL 90 (91)
T ss_pred eHHHHHHHh
Confidence 999887655
No 72
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.12 E-value=5.5e-10 Score=113.69 Aligned_cols=139 Identities=15% Similarity=0.231 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHh------HhcccccccccceEeeeC------------------
Q psy10612 52 TKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ------TSGHWAHYSENMFSFDVE------------------ 107 (426)
Q Consensus 52 P~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~------~sg~~~~~~~e~y~~~d~------------------ 107 (426)
+-...-...+.+.+++.|...||+++.+|-.+-.+.|. -..|-.--..+.|.+.+.
T Consensus 225 ~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~ 304 (494)
T PTZ00326 225 GGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKK 304 (494)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHH
Confidence 33445567888999999999999999987443444332 222321112344555421
Q ss_pred --------------------CceEEEcCCCcHHHHHHHhhhhcCc---CC-CCceeeeeccccccCCCCCCCCCccceeE
Q psy10612 108 --------------------NETYALKPMNCPGHCLIFDHRVRSW---RE-LPLRMADFGVLHRNELSGALTGLTRVRRF 163 (426)
Q Consensus 108 --------------------~~~~~LrP~~t~~i~~~~~~~~~~~---~~-lP~k~~~~g~~fR~E~~~~~~Gl~R~REF 163 (426)
.+.++||+.+|++.+|++......+ .. .|+|+|++|+|||+|..++ .|++||
T Consensus 305 ~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Da----tH~~eF 380 (494)
T PTZ00326 305 VHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDA----THLAEF 380 (494)
T ss_pred HhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCC----CcCcee
Confidence 2468999999999999988653220 22 3999999999999999998 999999
Q ss_pred eEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe
Q psy10612 164 QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 164 ~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
+|+|+.+++.+. ++++++.+ +.++|+++|+.
T Consensus 381 hQ~Eg~vi~~~~-s~~~L~~~---l~~f~~~lG~~ 411 (494)
T PTZ00326 381 HQVEGFVIDRNL-TLGDLIGT---IREFFRRIGIT 411 (494)
T ss_pred EEEEEEEEeCCC-CHHHHHHH---HHHHHHhcCCC
Confidence 999999998764 55666554 48999999873
No 73
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.99 E-value=6.7e-10 Score=108.46 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEc--CCCcHHHHHHHhhhh
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALK--PMNCPGHCLIFDHRV 129 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~Lr--P~~t~~i~~~~~~~~ 129 (426)
-.+++..|.+.+++.|.++||.+|.||+|+....... ....+..+ |.+.|. |+.++|+ |+.+ +.++++..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~--~~~~f~~~-y~~~~~~~~~~~~L~~SPe~~--~kr~la~~- 77 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDI--HLVPFETR-FVGPGASQGKTLWLMTSPEYH--MKRLLAAG- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCc--cCCceeee-eccccccCCcceEEecCHHHH--HHHHhhcc-
Confidence 3678899999999999999999999999987654321 11122222 444442 7889999 7666 55544321
Q ss_pred cCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 130 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 130 ~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
+ -|+||+|+|||+|.++. .+..||+|.|+|..+.+- +....+..++
T Consensus 78 -----~-~rvf~i~~~FR~e~~~~----~H~~EFt~lE~y~~~~d~~dlm~~~E~li 124 (306)
T PRK09350 78 -----S-GPIFQICKSFRNEEAGR----YHNPEFTMLEWYRPHYDMYRLMNEVDDLL 124 (306)
T ss_pred -----c-cceEEecceeecCCCCC----CCCcHHHhhhhhhhCCCHHHHHHHHHHHH
Confidence 2 29999999999999876 899999999999777642 4444444443
No 74
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.97 E-value=4.6e-09 Score=100.59 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee--CCceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d--~~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
+++..|.+.+++.|.+.||.+|.||+|+... ++. +.+.|.+.. .|+.++|+-......-++++.. .
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~----~~~----~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~----~ 69 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT----GGA----GARPFLVKYNALGLDYYLRISPQLFKKRLMVGG----L 69 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC----Ccc----ccceEEeeecCCCCcEEeecCHHHHHHHHHhcC----C
Confidence 5788999999999999999999999998652 221 235677743 3889999933222233333221 1
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHH
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI 194 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~ 194 (426)
+ |+|++++|||+|..+. .|++||+|+|+|....+- +....+..++ ..+++.
T Consensus 70 ~---~vf~i~~~fR~e~~~~----~hl~EF~~le~e~~~~~~~dvm~~~e~lv---~~i~~~ 121 (269)
T cd00669 70 D---RVFEINRNFRNEDLRA----RHQPEFTMMDLEMAFADYEDVIELTERLV---RHLARE 121 (269)
T ss_pred C---cEEEEecceeCCCCCC----CcccceeEEEEEEecCCHHHHHHHHHHHH---HHHHHH
Confidence 2 9999999999997666 899999999999665532 4444444333 444443
No 75
>KOG1035|consensus
Probab=98.84 E-value=1.7e-07 Score=102.45 Aligned_cols=343 Identities=11% Similarity=0.058 Sum_probs=195.6
Q ss_pred eeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHh
Q psy10612 48 CFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFD 126 (426)
Q Consensus 48 ~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~ 126 (426)
.++.+.-..+++.+...+.++|+++|+.++.||.+.... .. ..+..+-+.+-|+ |-.+.|..|.+.|++|++.
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~---~~---~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs 998 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRN---AC---AYFSRKAVELLDHSGDVVELPYDLRLPFARYVS 998 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCcccccc---cc---chhccceeeeecCCCCEEEeeccccchHHHHhh
Confidence 346677788899999999999999999999999443322 21 2345667788887 8889999999999999987
Q ss_pred hhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHH-c-CCeEEEEE
Q psy10612 127 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI-F-GFTFNLRL 203 (426)
Q Consensus 127 ~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~-l-gi~~~i~~ 203 (426)
.+. .+-+|.|.++.|||.+. . -.-+|+++++++++|... -.++|++.++ .+|... | +-++.+.+
T Consensus 999 ~N~----~~~~Kry~i~rVyr~~~-~-----~hP~~~~ec~fDii~~t~sl~~AE~L~vi---~Ei~~~~l~~~n~~i~l 1065 (1351)
T KOG1035|consen 999 RNS----VLSFKRYCISRVYRPAI-H-----NHPKECLECDFDIIGPTTSLTEAELLKVI---VEITTEILHEGNCDIHL 1065 (1351)
T ss_pred hch----HHHHHHhhhheeecccc-c-----CCCccccceeeeEecCCCCccHHHHHHHH---HHHHHHHhccCceeEEe
Confidence 542 34689999999999776 2 266899999999999987 7899987654 455443 1 11377888
Q ss_pred ecCC-----CccCCCchh-HHHHHHHHHH----------------hhc-----cCCCC-ceeCCC---CCcccc-Cccce
Q psy10612 204 STRP-----EKYLGELEV-WNKAEKQLEA----------------SLN-----SFGEP-WTENPG---DGAFYG-PKIDI 251 (426)
Q Consensus 204 ~~~~-----~~~~G~~~~-~~~~~~~l~~----------------~l~-----~~~~~-~~~~~~---~~~~~~-p~~~~ 251 (426)
||.. ..+.|.++. +.+.-+.|.. .+. ..... +..... .+.+-. +++..
T Consensus 1066 nH~~LL~Ai~~~~~i~~~~r~~v~~~l~~~~~~r~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 1145 (1351)
T KOG1035|consen 1066 NHADLLEAILSHCGIPKDQRRKVAELLSDMGSSRPQRSEKELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRFQALKLIRG 1145 (1351)
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccHHHHHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcchhhhHHHhh
Confidence 8742 133454431 1100000000 000 00000 000000 000000 00000
Q ss_pred ---------ee---------ecccCCc----eeeeeee-eeecCC------------eEEeEEEeCCCCccccCE-----
Q psy10612 252 ---------TI---------TDALKRP----HQCATIQ-LDFQLP------------IRFNLAYVNEKGEKNRPV----- 291 (426)
Q Consensus 252 ---------~~---------~~~~~~~----~~~~~~~-l~~~~~------------~~~~~~~~~~~~~y~~~v----- 291 (426)
.+ ....+.. ++.+..+ ..++.+ ++-+......+|+|+-.+
T Consensus 1146 ~~~~~~~vr~L~eLe~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgRyd~~~~~~~~ 1225 (1351)
T KOG1035|consen 1146 KLRADSLVRALKELENVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGRYDSLLQEVRD 1225 (1351)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccCCCcCCceeeecccchHHHHHHhhh
Confidence 00 0000000 0000000 000111 111122223344554322
Q ss_pred --EEe-cccccchHHHHHHHHHh--cCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHH
Q psy10612 292 --MIH-RAILGSVERMVAILTES--YAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKI 366 (426)
Q Consensus 292 --~~~-~~~~GgleRll~~l~e~--~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~ 366 (426)
+++ ...+| +. .+...... .+...+......+|.||..+......+.+|++.|++.||++++-.....+....-
T Consensus 1226 ~~~~~~p~a~g-v~-~~~~~~~~~~~~~~~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i~~~~s~~~~e~~ 1303 (1351)
T KOG1035|consen 1226 EQKMNLPGAIG-VS-ALSTIRQHAPKDLEPIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEIVPDPSPSLEELT 1303 (1351)
T ss_pred hhhhcCcccce-eh-hhHHHHHhhhccccCCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccceeeCCCcchHHHH
Confidence 111 01233 22 11111111 1233333345789999999988888999999999999999997664566788888
Q ss_pred HHHHHhCCcEEEEEecCccCCCeEEEEEccCC--eeeeecHHHHHHHHHHHH
Q psy10612 367 RNAQISQYNFIMVVGEKEKSSNTVNVRTRDNI--VHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 367 ~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~--~q~~v~~~el~~~i~~~~ 416 (426)
.+|+.--|-+++++- ++...+|.+.-. ....+-..++++++.+.+
T Consensus 1304 e~~~~~~i~~iliv~-----n~~~~vks~~~e~~se~~~~~~elv~f~~~~~ 1350 (1351)
T KOG1035|consen 1304 EYANEHEITCILIVT-----NQKEKVKSFELERKSEKVVGRTELVEFLLQAL 1350 (1351)
T ss_pred HHHhcCceEEEEEEe-----cceeeechhHHhhhhhhhhhHHHHHHHHHHhh
Confidence 888887777777774 566677665443 334556677888876654
No 76
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.62 E-value=3.5e-07 Score=86.38 Aligned_cols=136 Identities=19% Similarity=0.299 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccc-hhhHhHhc----ccccccccceEeeeC----CceEEEcCCCcHHHHHHHh
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYN-VKLWQTSG----HWAHYSENMFSFDVE----NETYALKPMNCPGHCLIFD 126 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~-~~l~~~sg----~~~~~~~e~y~~~d~----~~~~~LrP~~t~~i~~~~~ 126 (426)
.-.+.+.+.+++.|...||+++..|.++. ...|.+-. |...-..+.|.+... .+..+||+..++..++.+
T Consensus 17 hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l- 95 (247)
T PF01409_consen 17 HPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL- 95 (247)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHH-
Confidence 44667888899999999999999999965 44555433 211113345666332 367899999888888877
Q ss_pred hhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHc-CCeEEEEE
Q psy10612 127 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GFTFNLRL 203 (426)
Q Consensus 127 ~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~l-gi~~~i~~ 203 (426)
...+..|+|++++|+|||+|.... -.+.+|+|.++-+++..-. -..+ ......+++.| |.+.++++
T Consensus 96 ---~~~~~~p~kif~iG~VyR~D~~D~----th~~~f~Qleg~~~~~~~~-f~~L---k~~l~~l~~~lfG~~~~~r~ 162 (247)
T PF01409_consen 96 ---NKHRPPPIKIFEIGKVYRRDEIDA----THLPEFHQLEGLVVDKNVT-FEDL---KGTLEELLKELFGIDVKVRF 162 (247)
T ss_dssp ---TTTSHSSEEEEEEEEEESSSCSBS----SBESEEEEEEEEEEETTE--HHHH---HHHHHHHHHHHHTTTEEEEE
T ss_pred ---HHhcCCCeEEEecCceEecCCccc----ccCccceeEeeEEEecccc-hhHH---HHHHHHHHHHHhhcccceEe
Confidence 233567999999999999998765 6889999999988875432 2223 34458888888 88755544
No 77
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.59 E-value=2.9e-07 Score=90.64 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+|.+.+++.|.++||.+|.||+|+... ++. ..+.|.+..-++.++|+...+-..-++++.
T Consensus 22 ~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~----~e~----~~~~f~~~~~~~~~yL~~Spql~lk~l~~~----- 88 (322)
T cd00776 22 AIFRIRSEVLRAFREFLRENGFTEVHTPKITSTD----TEG----GAELFKVSYFGKPAYLAQSPQLYKEMLIAA----- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCC----CCc----cCCccccccCCCcceecCCHHHHHHHHHHh-----
Confidence 4468899999999999999999999999998733 111 223344332367888886555444333321
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc--chHHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGAL 185 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~--~~~~e~~~~~ 185 (426)
-=|+|+||+|||+|.+... ....||+|.|+|..+.++ +....+..++
T Consensus 89 ---~~~vf~i~~~FR~E~~~~~---rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll 137 (322)
T cd00776 89 ---LERVYEIGPVFRAEKSNTR---RHLSEFWMLEAEMAFIEDYNEVMDLIEELI 137 (322)
T ss_pred ---hhhhEEeccccccCCCCcC---CCcceeeccceeeeccCCHHHHHHHHHHHH
Confidence 1389999999999985520 478999999999887743 4444444443
No 78
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.8e-07 Score=93.46 Aligned_cols=118 Identities=24% Similarity=0.264 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC---CceEEEcCCCcHHHHHHHhhhh
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHRV 129 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~---~~~~~LrP~~t~~i~~~~~~~~ 129 (426)
.-.+++.++...+|+.|...||.+|+||+|....- | +..=|-+-.+ |+-|+| |-+ |.+ |++.+
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP-------E--GARDfLVPSRv~~G~FYAL-PQS-PQl---fKQLL 204 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP-------E--GARDFLVPSRVHPGKFYAL-PQS-PQL---FKQLL 204 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC-------c--cccccccccccCCCceeec-CCC-HHH---HHHHH
Confidence 45678999999999999999999999999976542 1 1112223222 555666 322 222 33321
Q ss_pred -cCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCee-EecCccchHHHHHHHHHHHHHHHHH
Q psy10612 130 -RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTVEQIGDEIVGALDFLRNVYSI 194 (426)
Q Consensus 130 -~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~-~fg~~~~~~~e~~~~~~~~~~il~~ 194 (426)
.+-- =|+|||.+|||+|.... -|.-||+|.|+| +|.+.++....+..|+ ..+|+.
T Consensus 205 MvsGf---dRYyQIarCFRDEDlRa----DRQPEFTQiD~EmSF~~~edv~~~~E~l~---~~vf~~ 261 (585)
T COG0173 205 MVAGF---DRYYQIARCFRDEDLRA----DRQPEFTQIDLEMSFVDEEDVMELIEKLL---RYVFKE 261 (585)
T ss_pred HHhcc---cceeeeeeeeccccccc----ccCCcceeEeEEeecCCHHHHHHHHHHHH---HHHHHH
Confidence 1211 29999999999998776 899999999999 7776655444444444 566654
No 79
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.55 E-value=4.6e-07 Score=87.40 Aligned_cols=109 Identities=23% Similarity=0.242 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee---CCceEEEcCCCcHHHHHHHhhhh-cC
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHRV-RS 131 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d---~~~~~~LrP~~t~~i~~~~~~~~-~~ 131 (426)
+++.+|.+.+|+.|.+.||.||.||+|..... .|. .+ |.+.. .+..+.|+-..+ ++...+ .+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~---~g~-----~~-f~~~~~~~~~~~~~L~~Spq-----l~lk~ll~~ 67 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP---EGA-----RD-FLVPSRLHPGKFYALPQSPQ-----LFKQLLMVS 67 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC---CCC-----CC-ceeccccCCCceeecccCHH-----HHHHHHHhc
Confidence 57889999999999999999999999975442 111 11 22211 134455653222 222211 11
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
.- =|+||+|++||+|.++. +|..||+|+|+|....+- +....+..++
T Consensus 68 g~---~~v~~i~~~fR~e~~~~----~r~~Ef~~~e~e~~~~~~~dlm~~~e~li 115 (280)
T cd00777 68 GF---DRYFQIARCFRDEDLRA----DRQPEFTQIDIEMSFVDQEDIMSLIEGLL 115 (280)
T ss_pred Cc---CcEEEeccceeCCCCCC----CccceeEEeEeeeccCCHHHHHHHHHHHH
Confidence 11 39999999999999887 799999999999776642 4444444443
No 80
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.53 E-value=1.2e-06 Score=86.91 Aligned_cols=113 Identities=21% Similarity=0.162 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee-----eCCceEEEcCCCcHHHHHHHhhh
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-----VENETYALKPMNCPGHCLIFDHR 128 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~-----d~~~~~~LrP~~t~~i~~~~~~~ 128 (426)
-.+++..|.+.+++.|.+.||.+|.||+|..... +. +.+.|.+. .-++.+.|+.......-++++..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~-------~~-~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC-------EG-GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS-------SS-SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc-------Cc-cccccccccchhhhcccceecCcChHHHHhhhcccc
Confidence 4688999999999999999999999999977652 11 45677776 12788999987776555554332
Q ss_pred hcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 129 VRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
. =|+|+||+|||+|.. .. ...-||+|.|+|.-+.+. ..-+.+..++
T Consensus 93 ~-------~~vf~i~~~FR~E~~~~~----rHl~EFtmLE~e~a~~~~~~lm~~~e~li 140 (335)
T PF00152_consen 93 L-------ERVFEIGPCFRNEESRTR----RHLPEFTMLEWEMAFADYDDLMDLIEELI 140 (335)
T ss_dssp H-------SEEEEEEEEE-BSSSCBT----TBSSEEEEEEEEEETSSHHHHHHHHHHHH
T ss_pred c-------hhhhheecceeccCcccc----cchhhhhhhhhccccCcHHHhHHHHHHHH
Confidence 1 389999999999987 44 567799999999877664 5444444444
No 81
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.44 E-value=1.9e-06 Score=85.13 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee-C-CceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-E-NETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d-~-~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.+++..|...+++.|...||.+|.||+|.+.. .|. ..+.|.... . ++..+|+-..+...-++. .+.
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~----~~~----~~~~f~~~~~~~~~~~yL~~Spql~~k~ll----~~g 75 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA----GGA----AARPFITHHNALDMDLYLRIAPELYLKRLI----VGG 75 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC----CCc----cceeEEeccCCCCcceeeccCHHHHHHHHH----hcC
Confidence 57889999999999999999999999997654 121 122333321 1 667778744332222222 111
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
-=|+|+||+|||+|.... -+.-||+|.|+|....+- +....+..++
T Consensus 76 ---~~~vf~i~~~FR~E~~~~----rHl~EFt~le~e~~~~~~~~~m~~~e~li 122 (329)
T cd00775 76 ---FERVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYADYNDMMDLTEDLF 122 (329)
T ss_pred ---CCcEEEEeccccCCCCCC----CCCCceEEEEEeeecCCHHHHHHHHHHHH
Confidence 149999999999998875 689999999999666542 4444444444
No 82
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=98.41 E-value=3.5e-06 Score=80.58 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=86.5
Q ss_pred CCceEEEEeCCCChH-HHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCc------cCCCeEEEE
Q psy10612 321 SPRQGIVIPVAEPFN-EYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKE------KSSNTVNVR 393 (426)
Q Consensus 321 ap~~V~Vi~~~~~~~-~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E------~~~~~v~vk 393 (426)
...+|+|+..+...+ ....+|+..|+++||++++-.+...++-..+.+|...||+|+|||-.++ ...+.|.||
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 457999999998766 8999999999999999999332246999999999999999999997755 223469999
Q ss_pred EccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 394 TRDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 394 ~~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
++.++++..++.+||+.++.+.+..+.
T Consensus 84 ~l~~~~e~dv~~~eLv~~l~~ei~~r~ 110 (273)
T PF12745_consen 84 SLEKKKETDVDRDELVDWLQQEIRERN 110 (273)
T ss_pred ccCCCcccccCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999987765
No 83
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=98.38 E-value=1.1e-06 Score=85.83 Aligned_cols=123 Identities=14% Similarity=0.047 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee----C-CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV----E-NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d----~-~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
+++.+|.+.+++.|.++||.+|.||+|+.... + +. ..+.|++.. . ++..+|+-..+-..-++++.
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~---~---e~-~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~--- 71 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPV---T---DP-HLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAA--- 71 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCC---C---Cc-CCcceeeeccCCCCCCcceeeecCHHHHHHHHHhc---
Confidence 57899999999999999999999999987631 1 11 223344321 1 45777875544433333322
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCeE
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFTF 199 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~~ 199 (426)
. + =|+|++|+|||+|.... -..-||+|.|+|....+- +....+..++ ..+++.+.-++
T Consensus 72 -g--~-~rVfeigp~FRaE~~~~----rHl~EFtmLE~e~~~~d~~d~m~~~e~li---~~i~~~~~~~~ 130 (304)
T TIGR00462 72 -G--S-GPIFQICKVFRNGERGR----RHNPEFTMLEWYRPGFDYHDLMDEVEALL---QELLGDPFAPW 130 (304)
T ss_pred -c--C-CCEEEEcCceeCCCCCC----CcccHHHhHHHHHHcCCHHHHHHHHHHHH---HHHHHhcCCCc
Confidence 1 1 39999999999999865 689999999999666542 3333343333 45555443344
No 84
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.36 E-value=6.6e-06 Score=76.56 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchh-hHhHhccccc-cc---ccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSGHWAH-YS---ENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~-l~~~sg~~~~-~~---~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.+.+.+.+++.+...||+|+.|+.|.+.+ .+..-+-.+. .. .+.+++...- .-+|||+..+++.+.++.+
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~l~~N---- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARALAKL---- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHHHHhc----
Confidence 45677888999999999999999998873 4443221110 00 0123332211 4689999999999887764
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcC
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 196 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lg 196 (426)
+.|+|+|++|+|||.+..+. .+..||+|.++...|.+. ...++ ...+..+++.+|
T Consensus 78 -~~~~~lFEiG~Vf~~~~~~~----~~~~E~~~l~~~~~g~~~-df~dl---kg~ve~ll~~l~ 132 (218)
T cd00496 78 -KPPIRIFSIGRVYRNDEIDA----THLPEFHQIEGLVVDKGL-TFADL---KGTLEEFAKELF 132 (218)
T ss_pred -CCCeeEEEEcCeEECCCCCC----CcCCccEEEEEEEECCCC-CHHHH---HHHHHHHHHHhc
Confidence 56999999999999875442 345599999999988532 12333 344588888888
No 85
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.35 E-value=2.6e-06 Score=89.48 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee---CCceEEEcCCCcHHHHHHHhhh-
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHR- 128 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d---~~~~~~LrP~~t~~i~~~~~~~- 128 (426)
.-.+++.+|.+.+|+.|...||.||+||+|.+.. .++ +.+ |.+.. .+.-++|+-... ++...
T Consensus 136 ~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~----~eG----ar~-f~vp~~~~~~~~y~L~qSpQ-----lykq~l 201 (583)
T TIGR00459 136 QRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKST----PEG----ARD-YLVPSRVHKGEFYALPQSPQ-----LFKQLL 201 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCC----CCC----Ccc-eeeeeecCCCceeecCCCHH-----HHHHHH
Confidence 3467899999999999999999999999998633 111 111 22221 134455652221 22221
Q ss_pred hcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHH
Q psy10612 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI 194 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~ 194 (426)
+.+- + =|+||+|+|||+|.... .|.-||+|.|+|.-..+- +....+..++ ..+++.
T Consensus 202 ~v~G--~-ervfqI~~~FR~E~~~t----~r~pEFT~le~E~af~d~~dvm~~~E~li---~~v~~~ 258 (583)
T TIGR00459 202 MVSG--V-DRYYQIARCFRDEDLRA----DRQPEFTQIDMEMSFMTQEDVMELIEKLV---SHVFLE 258 (583)
T ss_pred Hhcc--c-CcEEEEcceeeCCCCCC----CCCcccCcceeeecCCCHHHHHHHHHHHH---HHHHHH
Confidence 1111 1 39999999999999886 788999999999665543 4444444443 444443
No 86
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.35 E-value=3.5e-06 Score=81.87 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccch-hhHhHhcccc-cc---cccceEeeeCCceEEEcCCCcHHHHHHHhhh
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-KLWQTSGHWA-HY---SENMFSFDVENETYALKPMNCPGHCLIFDHR 128 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~-~l~~~sg~~~-~~---~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~ 128 (426)
...-.+.+.+.+++.|...||+|+.+|.|++. ..|..-+-.+ .. ..+.+.+. +..+||+..++++.+.+..+
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N 146 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEEN 146 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhc
Confidence 44456778888999999999999999999987 3454332111 00 01345554 46789999999999888754
Q ss_pred hcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe
Q psy10612 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
.. .|+|+|++|+|||.+.... .+..||+|.++-+.+.+ -.-.++ ......+++.+|++
T Consensus 147 ~~----~pirlFEiGrVfr~d~~d~----~~~pef~ql~gl~~~~~-~~f~dL---Kg~le~ll~~l~~~ 204 (294)
T TIGR00468 147 EK----PPIRIFSPGRVFRNDTVDA----THLPEFHQVEGLVIDKN-VSFTNL---KGFLEEFLKKMFGE 204 (294)
T ss_pred CC----CCceEEEecceEEcCCCCC----ccCChhhEEEEEEECCC-CCHHHH---HHHHHHHHHHhCCC
Confidence 32 6999999999999886443 34569999999887732 223333 34458888888875
No 87
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=98.34 E-value=3.5e-06 Score=87.40 Aligned_cols=113 Identities=16% Similarity=0.036 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee-eC-CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-VE-NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~-d~-~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
.-.+++.+|.+.+|+.|...||.+|.||+|.+.. .|. ..+.|... +- +..++|+-..+...-++++.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~--- 238 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA----GGA----AARPFITHHNALDIDLYLRIAPELYLKRLIVG--- 238 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC----CCc----cceeeeeccccCCCceEeccCHHHHHHHHHhc---
Confidence 3467889999999999999999999999997542 221 12334321 11 56777875443333333221
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
- -=|+|+||+|||+|.... -+.-||+|.|+|.-..+- +....+..+
T Consensus 239 -g---~~rVfei~~~FR~E~~~~----rH~pEFt~lE~e~a~~d~~d~m~~~E~l 285 (491)
T PRK00484 239 -G---FERVYEIGRNFRNEGIDT----RHNPEFTMLEFYQAYADYNDMMDLTEEL 285 (491)
T ss_pred -c---CCcEEEEecceecCCCCC----CcCCceEEEEEEEecCCHHHHHHHHHHH
Confidence 1 139999999999998875 789999999999665532 333333333
No 88
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=98.34 E-value=4e-06 Score=85.69 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++..|.+.+++.|...||.+|.||+|..... -| +.+.|.+..-++.++|+-..+...-++++ +-
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg-----~~~~f~v~~~~~~~yL~~Spql~~q~li~----~g 198 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT---EG-----GTELFPITYFEREAFLGQSPQLYKQQLMA----AG 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC---CC-----CcceeeeEecCCcEEECcCHHHHHHHHHh----cc
Confidence 45788999999999999999999999999974321 12 23455544336778887544332222222 11
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
+ =|+|++|+|||+|.... . -..-||+|.|+|.-..+- +....+..+
T Consensus 199 --~-~rVf~i~~~FR~E~~~t-~--rHl~EFt~lE~e~a~~~~~dlm~~~e~l 245 (428)
T TIGR00458 199 --F-ERVYEIGPIFRAEEHNT-H--RHLNEATSIDIEMAFEDHHDVMDILEEL 245 (428)
T ss_pred --c-CcEEEEecccccCCCCC-c--cchheeeEeeeeeccCCHHHHHHHHHHH
Confidence 1 39999999999998763 0 255799999999665543 433333333
No 89
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.3e-05 Score=78.07 Aligned_cols=139 Identities=18% Similarity=0.244 Sum_probs=93.8
Q ss_pred CCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHh------HhcccccccccceEeeeCCceEEEcCCC
Q psy10612 44 SPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ------TSGHWAHYSENMFSFDVENETYALKPMN 117 (426)
Q Consensus 44 ~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~------~sg~~~~~~~e~y~~~d~~~~~~LrP~~ 117 (426)
.+|. ...|-.......+.+.+++.|...||+++..|.+|. +.|. ...|-..-..+.|.+++..+.++||--+
T Consensus 100 lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHT 177 (335)
T COG0016 100 LPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHT 177 (335)
T ss_pred CCCc-cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCCCceeecccC
Confidence 3454 445556667788889999999999999999996654 3332 2223222234466676543357999766
Q ss_pred cHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcC
Q psy10612 118 CPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFG 196 (426)
Q Consensus 118 t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lg 196 (426)
|+--+|...... .-|+|++.+|+|||+|.-.. -...+|+|.|.-+++..- .-..+ .....++++.++
T Consensus 178 s~vq~R~l~~~~----~~P~k~~~~grvyR~D~~Da----THs~~FhQiEGlvvd~~~-s~~~L---kg~L~~f~~~~f 244 (335)
T COG0016 178 SPVQARTLAENA----KIPIKIFSPGRVYRNDTVDA----THSPEFHQIEGLVVDKNI-SFADL---KGTLEEFAKKFF 244 (335)
T ss_pred cHhhHHHHHhCC----CCCceEecccceecCCCCCc----ccchheeeeEEEEEeCCc-cHHHH---HHHHHHHHHHhc
Confidence 666666665432 22999999999999996665 689999999997776542 22233 333477777775
No 90
>PRK06462 asparagine synthetase A; Reviewed
Probab=98.33 E-value=2.5e-06 Score=84.46 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhh-HhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l-~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
.-.+++..|.+.+++.|.+.||.+|.||+|....- ....| .+ -+-..+.+..-++.++|+....-. -++++..
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g--- 101 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLG-SD-LPVKQISIDFYGVEYYLADSMILH-KQLALRM--- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcc-cc-CCccccccccCCCceeeccCHHHH-HHHHHhh---
Confidence 45788999999999999999999999999986520 00011 11 111223332236788898755433 3443321
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc-cchHHHHHHH
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV-EQIGDEIVGA 184 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~-~~~~~e~~~~ 184 (426)
. =|+|+||+|||+|.... .+=-..-||+|.|+|..+.+ ++....+..+
T Consensus 102 -~---~rVfeI~p~FR~E~~~~-~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~l 150 (335)
T PRK06462 102 -L---GKIFYLSPNFRLEPVDK-DTGRHLYEFTQLDIEIEGADLDEVMDLIEDL 150 (335)
T ss_pred -c---CcEEEEeccccCCCCCC-CCCCCCCchheeeehhhcCCHHHHHHHHHHH
Confidence 1 39999999999998652 11147889999999976654 2433333333
No 91
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=98.32 E-value=3.1e-06 Score=89.42 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee---CCceEEEcCCCcHHHHHHHhhh-
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---ENETYALKPMNCPGHCLIFDHR- 128 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d---~~~~~~LrP~~t~~i~~~~~~~- 128 (426)
.-.+++.+|.+.+|+.|...||.||.||+|.+... .|. .+ |.+.. .+..++|+-... ++...
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~---ega-----~~-f~v~~~~~~~~~~~L~qSpq-----l~kq~l 204 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP---EGA-----RD-YLVPSRVHPGKFYALPQSPQ-----LFKQLL 204 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC---CCC-----cc-ceecccccCCceeecCCCHH-----HHHHHH
Confidence 34678899999999999999999999999986531 111 11 22221 245566652221 12221
Q ss_pred hcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHH
Q psy10612 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI 194 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~ 194 (426)
+.+-- =|+||+|+|||+|.... .|.-||+|.|+|.-..+- +....+..++ ..+++.
T Consensus 205 ~~~g~---~rvfqi~~~FR~E~~~~----~r~~EFt~le~e~af~~~~dvm~~~E~li---~~i~~~ 261 (588)
T PRK00476 205 MVAGF---DRYYQIARCFRDEDLRA----DRQPEFTQIDIEMSFVTQEDVMALMEGLI---RHVFKE 261 (588)
T ss_pred Hhccc---CceEEEeceeecCCCCC----CcCcccccceeeecCCCHHHHHHHHHHHH---HHHHHH
Confidence 11111 39999999999999665 577799999999666543 4444444444 444543
No 92
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=98.31 E-value=4.8e-06 Score=87.52 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee----CCceEEEcCCCcHHHHHHHhhhh
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV----ENETYALKPMNCPGHCLIFDHRV 129 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d----~~~~~~LrP~~t~~i~~~~~~~~ 129 (426)
-.+++.+|.+.+|+.|...||.||+||+|.+.. |+ .....|.- -+.+++||-..+..+-++++...
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GG-----A~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~ 321 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GG-----ANARPFITHHNDLDLDLYLRIATELPLKMLIVGGI 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Cc-----ccceeEEecccCCCcceEEeecHHHHHHHHHHhCC
Confidence 467889999999999999999999999998762 21 11222211 16778898666655555543321
Q ss_pred cCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 130 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 130 ~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
=|+|+||++||+|.... -..-||+|+|+|.-..+
T Consensus 322 -------~rVfeIgp~FRnE~~~~----rHnpEFTmlE~y~ay~d 355 (585)
T PTZ00417 322 -------DKVYEIGKVFRNEGIDN----THNPEFTSCEFYWAYAD 355 (585)
T ss_pred -------CCEEEEcccccCCCCCC----CccceeeeeeeeeecCC
Confidence 39999999999999775 68899999999976653
No 93
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=98.31 E-value=4.3e-06 Score=88.34 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
-.+++.+|.+.+|+.|...||.||+||+|.+.. +|. +...|.+... +..++|+=..+...-++++..
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~----~ga----~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG--- 300 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA----SGA----NAKSFVTHHNANAMDLFLRVAPELHLKQCIVGG--- 300 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC----CCC----CccceEeecccCCCCEEecCChHHHHHHHhhcc---
Confidence 467889999999999999999999999995432 221 2234443222 567788765554444443221
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
+ =|+|+||+|||+|.... -+.-||+|.|+|....+- .....+..+
T Consensus 301 ---~-erVyeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~l 346 (659)
T PTZ00385 301 ---M-ERIYEIGKVFRNEDADR----SHNPEFTSCEFYAAYHTYEDLMPMTEDI 346 (659)
T ss_pred ---c-CCEEEEeceecCCCCCC----CccccccceeeeeecCCHHHHHHHHHHH
Confidence 1 39999999999998875 689999999999776643 333333333
No 94
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=98.29 E-value=5.3e-06 Score=85.12 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++..|.+.+++.|.+.||.||.||+|..... .| +.+.|.+..-++.++|+-..+...-++++ +.
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg-----~~~~f~~~~~~~~~~L~~Spql~~q~l~~----~g 201 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT---EG-----GAELFPIDYFEKEAYLAQSPQLYKQMMVG----AG 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC---CC-----CcceEeEEecCCceEecCCHHHHHHHHHh----cC
Confidence 45788999999999999999999999999954221 12 23355554347788887654433222221 11
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc--cchHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV--EQIGDEIVGA 184 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~--~~~~~e~~~~ 184 (426)
- =|+|+||+|||+|..... -..-||+|.|+|.-..+ ++....+..+
T Consensus 202 ~---~rVf~i~~~FR~E~~~t~---rHl~EFt~lE~e~a~~~~~~~lm~~~e~l 249 (437)
T PRK05159 202 F---ERVFEIGPVFRAEEHNTS---RHLNEYTSIDVEMGFIDDHEDVMDLLENL 249 (437)
T ss_pred C---CcEEEEeceeeCCCCCCc---ccchhhheeeeeeeecccHHHHHHHHHHH
Confidence 1 399999999999988630 24579999999965554 2444444433
No 95
>PLN02903 aminoacyl-tRNA ligase
Probab=98.27 E-value=5.2e-06 Score=87.75 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHHHH-cCCeEeecccccchhhHhHhcccccccccceEee--eCCceEEEcCCCcHHHHHHHhhh-
Q psy10612 53 KGAFIYNTLVEFIRSEYRK-RGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD--VENETYALKPMNCPGHCLIFDHR- 128 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~-~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~--d~~~~~~LrP~~t~~i~~~~~~~- 128 (426)
.-.+++.+|.+.+|+.|.. .||.||+||+|..... .| +.+.+... ..+..++|+-... ++...
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---eG-----ardf~v~~~~~~g~~y~L~qSPQ-----lykQ~L 267 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---EG-----ARDYLVPSRVQPGTFYALPQSPQ-----LFKQML 267 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---CC-----CcccEEeeecCCCcccccCCCHH-----HHHHHH
Confidence 4578899999999999986 9999999999975542 11 11222211 1244555653211 22222
Q ss_pred hcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHH
Q psy10612 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYS 193 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~ 193 (426)
+.+-- =|+|||++|||+|.... .|.-||+|.|+|.-..+- +....+..++ ..+++
T Consensus 268 m~~G~---~RvFqIa~~FR~E~~~t----~RhpEFTqLE~E~sf~d~~dvm~~~E~li---~~v~~ 323 (652)
T PLN02903 268 MVSGF---DRYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLEDMLKLNEDLI---RQVFK 323 (652)
T ss_pred HhccC---CcEEEEehhhccCCCCC----CcccceeeeeeeecCCCHHHHHHHHHHHH---HHHHH
Confidence 11211 38999999999999876 688999999999665543 4444444444 44454
No 96
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.25 E-value=8.6e-06 Score=79.64 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchh-hHhHhc----ccccccccceEeeeCCceEEEcCCCcHHHHHHHhh
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSG----HWAHYSENMFSFDVENETYALKPMNCPGHCLIFDH 127 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~-l~~~sg----~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~ 127 (426)
-...-...+.+.+++.|...||+++.+|.+++.. .|..-+ |-.--..+.|.+ .+..+||...++...+...+
T Consensus 105 G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp~qir~L~~ 181 (339)
T PRK00488 105 GSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSPVQIRTMEK 181 (339)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcHHHHHHHHh
Confidence 3445567889999999999999999999998644 344322 211112245556 35689999888888877654
Q ss_pred hhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHc
Q psy10612 128 RVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 195 (426)
Q Consensus 128 ~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~l 195 (426)
...|+|++.+|+|||++.... -+..+|+|.++-+++..- .-.++..+ ...+++.+
T Consensus 182 -----~~~Pirif~~G~VyR~D~~Da----tH~~~FhQleglvvd~~v-tf~dLK~~---L~~fl~~~ 236 (339)
T PRK00488 182 -----QKPPIRIIAPGRVYRNDSDDA----THSPMFHQVEGLVVDKNI-SFADLKGT---LEDFLKAF 236 (339)
T ss_pred -----cCCCeEEEEeeeEEEcCCCCc----ccCcceeeEEEEEEeCCC-CHHHHHHH---HHHHHHHH
Confidence 457999999999999998555 689999999999888643 22333333 36666665
No 97
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=98.25 E-value=5.5e-06 Score=86.12 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee--e--CCceEEEcCCCcHHHHHHHhhhh
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD--V--ENETYALKPMNCPGHCLIFDHRV 129 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~--d--~~~~~~LrP~~t~~i~~~~~~~~ 129 (426)
-.+++.+|.+.+|+.|...||.||.||+|.+. .|+ .....|. . -+.+++||=..+..+-++++..
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~-----~gG-----a~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG- 251 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGG-----ASARPFITHHNALDLDMYLRIAPELYLKRLVVGG- 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec-----CCC-----CcccceecccccCCcceeeecCHHHHHHHHHhcc-
Confidence 46789999999999999999999999999653 121 1111121 1 1567788765554444444321
Q ss_pred cCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 130 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 130 ~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
- =|+|++|+|||+|.... -+.-||+|.|+|.-..+- +....+..++
T Consensus 252 ---~---~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 252 ---F---ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred ---C---CcEEEEehhccCCCCCC----CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 1 39999999999998765 789999999999776642 4444444333
No 98
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=98.25 E-value=4.7e-06 Score=86.52 Aligned_cols=114 Identities=16% Similarity=0.070 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee--CCceEEEcCCCcHHHHHHHhhhhc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV--ENETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d--~~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
.-.+++..|.+.+|+.|...||.||.||+|.+.. |+. ..+.|.... -+..++||-..+..+-++++..
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga---~a~pF~t~~~~~~~~~yLriSpELylKrlivgG-- 239 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA---NARPFITHHNALDMDLYLRIAPELYLKRLIVGG-- 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc---cceeEEeecccCCCceEEecCHHHHHHHHHhCC--
Confidence 3467889999999999999999999999997542 221 112233221 2677888866555444444321
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
- =|+|+||++||+|.... -+.-||+|+|+|.-..+- +....+..++
T Consensus 240 --~---~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~dlm~~~E~li 286 (496)
T TIGR00499 240 --F---EKVYEIGRNFRNEGVDT----THNPEFTMIEFYQAYADYEDLMDLTENLF 286 (496)
T ss_pred --C---CceEEEecceecCCCCC----cccchhheeehhhhcCCHHHHHHHHHHHH
Confidence 1 39999999999998875 689999999999655532 3333343333
No 99
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.7e-06 Score=78.74 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=88.4
Q ss_pred ceeeccc----hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee-CCceEEEcCCCcHHH
Q psy10612 47 SCFFQTK----GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV-ENETYALKPMNCPGH 121 (426)
Q Consensus 47 ~~~~lP~----~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d-~~~~~~LrP~~t~~i 121 (426)
...|.|. ....+.+|...+|..|...||.||+||+|...-+-.. |...|.-+.+.-.. ++..++|.+..+-++
T Consensus 4 ~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~--hL~~F~Te~~~~~~~~~~~l~L~TSPEy~m 81 (322)
T COG2269 4 TPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDI--HLHPFETEFLGPGGAKGKPLWLHTSPEYHM 81 (322)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCcc--ceeeeeeEEeccCccccceeeeecCcHHHH
Confidence 3455553 3566899999999999999999999999865443211 22223222221111 156899999888888
Q ss_pred HHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 122 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 122 ~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
-++++... -.+||+|+||||+..+. ..--||+|.+.|-.|.+- ....|+..++
T Consensus 82 KrLLAag~-------~~ifql~kvfRN~E~G~----~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll 135 (322)
T COG2269 82 KRLLAAGS-------GPIFQLGKVFRNEEMGR----LHNPEFTMLEWYRVGCDYYRLMNEVDDLL 135 (322)
T ss_pred HHHHHccC-------CcchhhhHHHhcccccc----cCCCceeEeeeeccCCcHHHHHHHHHHHH
Confidence 88876531 26899999999998765 677899999999999875 4555555544
No 100
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=6.3e-06 Score=84.67 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=93.2
Q ss_pred CCCCCCCCCCceEEEEeCCC-------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCcc
Q psy10612 313 AGKWPFWISPRQGIVIPVAE-------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEK 385 (426)
Q Consensus 313 g~~~p~~~ap~~V~Vi~~~~-------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~ 385 (426)
|...|+.+||.+|.++|... ....++..++..|...+++++.|.+.....|.||+.++.+|+|.++-+|.+..
T Consensus 276 G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kys 355 (500)
T COG0442 276 GLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYS 355 (500)
T ss_pred CccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhh
Confidence 78899999999999998643 15678888999899999999999634688999999999999999999999999
Q ss_pred CCCeEEEEEccCCe--eeeecHHHHHHH-HHHHHhhcc
Q psy10612 386 SSNTVNVRTRDNIV--HGEFSVDDVITR-FGKLKENRT 420 (426)
Q Consensus 386 ~~~~v~vk~~~~~~--q~~v~~~el~~~-i~~~~~~~~ 420 (426)
++.++++.++++.+ ....+....+.. +...++...
T Consensus 356 e~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~ 393 (500)
T COG0442 356 EAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIH 393 (500)
T ss_pred hhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhc
Confidence 99999999999999 677788887777 666666554
No 101
>PLN02502 lysyl-tRNA synthetase
Probab=98.20 E-value=8.3e-06 Score=85.36 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee-eC-CceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD-VE-NETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~-d~-~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
-.+++..|...+++.|...||.+|.||+|.+.. |+. ...-|... +. +..++|+=..+..+-++++..
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA---~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g--- 296 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGA---AARPFVTHHNDLNMDLYLRIATELHLKRLVVGG--- 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCc---cccceeeecccCCcceeeecCHHHHHHHHHHhc---
Confidence 457889999999999999999999999997542 221 11223221 11 677888765554444443321
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
- =|+|+||++||+|.... -+.-||+|+|+|.-..+- +....+..+
T Consensus 297 -~---~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d~~dlm~~~E~l 342 (553)
T PLN02502 297 -F---ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYADYNDMMELTEEM 342 (553)
T ss_pred -c---CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCCHHHHHHHHHHH
Confidence 1 38999999999998775 789999999999655542 433334333
No 102
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=98.19 E-value=9.4e-06 Score=83.54 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee---------CCceEEEcCCCcHHHHH
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV---------ENETYALKPMNCPGHCL 123 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d---------~~~~~~LrP~~t~~i~~ 123 (426)
.-.+++..|.+.+++.|...||.+|.||+|.... +++ ..+.|.+.- -+..++|+...+-.. +
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~----~eg----~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q 201 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITASD----CEG----AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-E 201 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceeccC----CCC----CCCceEeecccccccccccCCCcccccCHHHHH-H
Confidence 4578899999999999999999999999998653 211 234565521 167778876544333 2
Q ss_pred HHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 124 IFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 124 ~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
+++. .+ =|+|+|++|||+|..... -..-||+|.|+|.-..+
T Consensus 202 ~l~~------g~-~rVf~i~~~FR~E~~~t~---rHl~EFt~lE~e~~~~~ 242 (450)
T PRK03932 202 AYAM------AL-GKVYTFGPTFRAENSNTR---RHLAEFWMIEPEMAFAD 242 (450)
T ss_pred HHHh------cc-CCeEEeeeccccCCCCCc---cccccccccceEEeccC
Confidence 2221 11 389999999999986320 34679999999966554
No 103
>PLN02850 aspartate-tRNA ligase
Probab=98.18 E-value=6.9e-06 Score=85.78 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
-.+++..|.+.+++.|...||.+|.||+|..... -| +.+.|.+.--++.++|+-......=++++.
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~---eg-----ga~~F~v~yf~~~~~L~qSpql~kq~li~~------ 289 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS---EG-----GSAVFRLDYKGQPACLAQSPQLHKQMAICG------ 289 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC---cc-----ccceeeeccCCcceecCCCHHHHHHHHHHh------
Confidence 4678899999999999999999999999955331 11 234565543478888875443322222211
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCee-EecCc-cchHHHHHHH
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTV-EQIGDEIVGA 184 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~-~fg~~-~~~~~e~~~~ 184 (426)
.+ =|+|+||+|||+|.+... -..-||+|.|+| .|+.. ++....+..+
T Consensus 290 g~-~rVfeIgp~FRaE~s~t~---RHl~EFt~Le~Em~~~~~y~evm~~~E~l 338 (530)
T PLN02850 290 DF-RRVFEIGPVFRAEDSFTH---RHLCEFTGLDLEMEIKEHYSEVLDVVDEL 338 (530)
T ss_pred cC-CceEEEecccccCCCCCC---ccchhhccchhhhhhhcCHHHHHHHHHHH
Confidence 11 399999999999985321 356799999999 67653 2333333333
No 104
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=98.17 E-value=1.1e-05 Score=86.12 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccc-eEee-eCCceEEEcCCCcHHHHHHHhhhh-
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENM-FSFD-VENETYALKPMNCPGHCLIFDHRV- 129 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~-y~~~-d~~~~~~LrP~~t~~i~~~~~~~~- 129 (426)
.-.+++.+|.+.+|+.|...||.+|+||+|..... .|. .+. .... ..+.-++|+-. . .++...+
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---eGA-----r~~~~p~~~~~~~~y~L~qS-P----Qlykq~lm 220 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP---EGA-----RDYLVPSRIHPKEFYALPQS-P----QLFKQLLM 220 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---CCC-----cceEEeeecCCCcceecCCC-H----HHHHHHHH
Confidence 45788999999999999999999999999986431 111 111 1111 11334455421 1 1233322
Q ss_pred cCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 130 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 130 ~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
.+-- =|+|||++|||+|.... -|.-||+|.|+|.-..+. +....+..++
T Consensus 221 ~~G~---~rvfqI~~~FR~E~~~t----~r~pEFT~LE~E~af~d~~dvm~l~E~li 270 (706)
T PRK12820 221 IAGF---ERYFQLARCFRDEDLRP----NRQPEFTQLDIEASFIDEEFIFELIEELT 270 (706)
T ss_pred hccC---CcEEEEechhcCCCCCC----CcCccccccceeeccCCHHHHHHHHHHHH
Confidence 1111 39999999999999876 688999999999555543 4444444443
No 105
>KOG2411|consensus
Probab=98.13 E-value=9.4e-07 Score=88.01 Aligned_cols=104 Identities=25% Similarity=0.282 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHH-HHcCCeEeecccccchhhHhHh-cccccccccceEeeeC---CceEEEcCCCcHHHHHHHhhh
Q psy10612 54 GAFIYNTLVEFIRSEY-RKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHR 128 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~-~~~G~~~i~tP~l~~~~l~~~s-g~~~~~~~e~y~~~d~---~~~~~LrP~~t~~i~~~~~~~ 128 (426)
-.+++..+...+++.+ ++.||.+|+||+| |.++ |+. .| |-+-.+ |.-++| |-+-+..-.++.
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtL-----FkrTPgGA----~E-FvVPtr~~~g~FYaL-pQSPQQfKQlLM-- 243 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTL-----FKRTPGGA----RE-FVVPTRTPRGKFYAL-PQSPQQFKQLLM-- 243 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcch-----hccCCCcc----ce-eecccCCCCCceeec-CCCHHHHHHHHH--
Confidence 4678889999999988 6789999999987 5443 221 11 222111 233333 333333332221
Q ss_pred hcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCee-EecCccchH
Q psy10612 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTVEQIG 178 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~-~fg~~~~~~ 178 (426)
.+-- =|+||+++|||+|.... -|.-||+|.|+| .|...+...
T Consensus 244 -vsGi---drYyQiARCfRDEdlR~----DRQPEFTQvD~EMsF~~~~dim 286 (628)
T KOG2411|consen 244 -VSGI---DRYYQIARCFRDEDLRA----DRQPEFTQVDMEMSFTDQEDIM 286 (628)
T ss_pred -Hhch---hhHHhHHhhhcccccCc----ccCCcceeeeeEEeccCHHHHH
Confidence 1211 28999999999998765 799999999999 555443333
No 106
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=98.08 E-value=1.4e-05 Score=82.28 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee---------eCCceEEEcCCCcHHHHHH
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD---------VENETYALKPMNCPGHCLI 124 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~---------d~~~~~~LrP~~t~~i~~~ 124 (426)
-.+++..|.+.+++.|...||.+|.||+|.... +++ +.++|.+. --++.++|+-...-
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~----~eg----~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql----- 201 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSND----CEG----AGELFRVSTDGIDFSQDFFGKEAYLTVSGQL----- 201 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecC----CCC----CCCceEecccccccchhccCCccccccCHHH-----
Confidence 468899999999999999999999999997654 111 23344443 11566677654322
Q ss_pred HhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 125 FDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 125 ~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
+...+.+ .+ =|+|++|+|||+|.... . -..-||+|+|+|.-..+
T Consensus 202 ~lq~l~~--g~-~rVf~i~~~FR~E~~~t-~--rHl~EFt~le~e~~~~~ 245 (453)
T TIGR00457 202 YLETYAL--AL-SKVYTFGPTFRAEKSNT-S--RHLSEFWMIEPEMAFAN 245 (453)
T ss_pred HHHHHhh--cc-cCceEeeeccccCCCCC-C--cCcchhccceeeeecCC
Confidence 2222211 11 39999999999998762 0 24579999999965544
No 107
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=98.03 E-value=1.6e-05 Score=89.52 Aligned_cols=112 Identities=20% Similarity=0.113 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
-.+++.+|.+.+|+.|...||.||+||+|...+ .|. ..+.|.+.-. +.+++||-..+-..-+++...
T Consensus 769 ~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~----gGa----~a~pF~t~~~~~~~~~yLriSPELylKrLivgG--- 837 (1094)
T PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQVH----GGA----NARPFVTHINAYDMDLYLRIAPELYLKRLCVGG--- 837 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC----CCc----ccceeEeeecCCCccchhhcChHHHHHHHHhcc---
Confidence 467889999999999999999999999997443 121 1223433221 667788765554444443221
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
+ =|+|+||++||+|.... -..-||+|.|+|.-..+- +....+..+
T Consensus 838 ---~-erVFEIg~~FRnE~~~~----rHnpEFTmLE~y~a~~dy~d~m~l~E~l 883 (1094)
T PRK02983 838 ---V-ERVFELGRNFRNEGVDA----THNPEFTLLEAYQAHADYDTMRDLTREL 883 (1094)
T ss_pred ---c-CceEEEcceecCCCCCC----CccccccchhhhhhcCCHHHHHHHHHHH
Confidence 1 39999999999999875 689999999999766542 333333333
No 108
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.01 E-value=4.3e-05 Score=77.98 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEee-cccccchh-----hHhHhcccccccccceEeeeC----------------------
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVV-SPNVYNVK-----LWQTSGHWAHYSENMFSFDVE---------------------- 107 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~-tP~l~~~~-----l~~~sg~~~~~~~e~y~~~d~---------------------- 107 (426)
.-...+.+.+++.|...||.++. .|.++..- ||.-..|-.--..+.|.+++.
T Consensus 221 HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~ 300 (492)
T PLN02853 221 HPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGG 300 (492)
T ss_pred CHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCC
Confidence 44567888899999999999994 56655432 222223322223345555421
Q ss_pred --------------CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecC
Q psy10612 108 --------------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 173 (426)
Q Consensus 108 --------------~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~ 173 (426)
.+..+||.-+|+..+|++..... ....|+|++.+|+|||+|.-.. -.+.||+|.|.-+++.
T Consensus 301 ~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~-~~~~p~k~fsigrVfR~d~iDa----tH~~eFhQ~EG~vvd~ 375 (492)
T PLN02853 301 YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQ-KGFKPKRYFSIDRVFRNEAVDR----THLAEFHQVEGLVCDR 375 (492)
T ss_pred CCccccccccccchhcccccCCCCCHHHHHHHHHhhc-cCCCCcEEEeccceecCCCCCc----ccCccceeEEEEEEeC
Confidence 15789998777777877764322 1235999999999999998666 6899999999999975
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC
Q psy10612 174 VEQIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 174 ~~~~~~e~~~~~~~~~~il~~lgi 197 (426)
.- .-..+. .+...+++++|.
T Consensus 376 ~~-t~~~L~---g~l~~f~~~lg~ 395 (492)
T PLN02853 376 GL-TLGDLI---GVLEDFFSRLGM 395 (492)
T ss_pred CC-CHHHHH---HHHHHHHHHcCC
Confidence 42 222333 445888888886
No 109
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.92 E-value=3.4e-05 Score=80.76 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
-.+++..|.+.+|+.|...||.||.||+|..... -| +.+.|.+..-++.++|+-.... +...+...
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~---eg-----ga~~F~v~yf~~~~~L~qSpql-----~kq~li~~- 277 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS---EG-----GANVFKLEYFNRFAYLAQSPQL-----YKQMVLQG- 277 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---Cc-----cccccccccCCCCeecCCCHHH-----HHHHHHhc-
Confidence 4678899999999999999999999999976541 12 2334444333678888654332 22221111
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCee-EecCc-cchHHHHHHH
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCTV-EQIGDEIVGA 184 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~-~fg~~-~~~~~e~~~~ 184 (426)
.+ =|+|+||+|||+|.... + -..-||+|.|+| .|+.. .+....+..+
T Consensus 278 g~-~rVfeI~p~FRaE~s~T-~--RHl~EFt~Le~E~~~~~~y~evm~~~e~l 326 (550)
T PTZ00401 278 DV-PRVFEVGPVFRSENSNT-H--RHLTEFVGLDVEMRINEHYYEVLDLAESL 326 (550)
T ss_pred CC-CCEEEEeCeEeCCCCCC-C--CCccchhhhhhhhHhcCCHHHHHHHHHHH
Confidence 11 39999999999998762 1 345799999997 46544 2444444333
No 110
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.91 E-value=8.3e-05 Score=77.98 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchh
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 86 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~ 86 (426)
.-++++..|...+++.|...||.+|.||+|...+
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 4578999999999999999999999999997665
No 111
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00011 Score=73.90 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-++++..|...+++.|.+.||.+|.||+|...+. .-+.++|+++--+.+.+|. ..+. +++..+...
T Consensus 132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~--------EGg~elF~v~yf~~~a~Lt--qS~Q---Lyke~~~~a 198 (435)
T COG0017 132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASAT--------EGGGELFKVDYFDKEAYLT--QSPQ---LYKEALAAA 198 (435)
T ss_pred HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC--------CCCceeEEEeecCcceEEe--cCHH---HHHHHHHHH
Confidence 35789999999999999999999999999977652 2256788876555666663 2222 222222111
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
. =|+|.+|++||.|.+..+ -.+-||+|.|+|.-..+
T Consensus 199 l---~rVf~igP~FRAE~s~T~---RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 199 L---ERVFTIGPTFRAEKSNTR---RHLSEFWMLDPEMAFAD 234 (435)
T ss_pred h---CceEEecCceecCCCCCc---chhhhHheecceeccCc
Confidence 1 399999999999998752 24899999999976655
No 112
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.79 E-value=0.00017 Score=75.67 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--------------------------
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-------------------------- 107 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-------------------------- 107 (426)
-.+++.+|...+++.|...||.+|.||+|...+ +++ +.++|.++.-
T Consensus 225 i~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~----~EG----A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~ 296 (565)
T PLN02603 225 VARVRNALAYATHKFFQENGFVWVSSPIITASD----CEG----AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWS 296 (565)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeecccC----CCc----cccCceeeeccccccccccccccccccCcccccccc
Confidence 468899999999999999999999999997654 111 3345544210
Q ss_pred ----CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecC
Q psy10612 108 ----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 173 (426)
Q Consensus 108 ----~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~ 173 (426)
++..+|.-..- ++...... .+ =|+|++|++||+|.+... -.+-||+|.|+|.-..
T Consensus 297 ~dyF~~~~~LtvS~Q-----L~~E~~~~--~l-~rVy~igp~FRaE~s~T~---RHL~EF~mlE~E~af~ 355 (565)
T PLN02603 297 QDFFGKPAFLTVSGQ-----LNGETYAT--AL-SDVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFA 355 (565)
T ss_pred hhhhCcceeeccCch-----HHHHHHHh--cc-cceEEEecceeCCCCCCc---cccccceeeeeeeecC
Confidence 12223321110 11111110 11 389999999999988631 3567999999996433
No 113
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.72 E-value=0.00019 Score=75.41 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchh
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 86 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~ 86 (426)
.-++++..|.+.+++.|...||.+|.||+|...+
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 3578999999999999999999999999997665
No 114
>PLN02532 asparagine-tRNA synthetase
Probab=97.66 E-value=0.00027 Score=74.72 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchh
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK 86 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~ 86 (426)
.-++++..|...+++.|...||.+|.||+|...+
T Consensus 233 ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 233 SVTRVRSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 4578999999999999999999999999997664
No 115
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00026 Score=71.81 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
...+.+|++.+|+.|...||.||+||+|.+.. |+. ...-|..... +-+++||=..|-.+-|++....
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~-----GGA---~ArPF~ThhNald~dlyLRIApELyLKRliVGG~--- 248 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPIP-----GGA---AARPFITHHNALDMDLYLRIAPELYLKRLIVGGF--- 248 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEeccccccccC-----CCc---ccccceeeecccCCceEEeeccHHHHHHHHhcCc---
Confidence 45678899999999999999999999997653 321 1112221111 6789999887877777765432
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecC
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT 173 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~ 173 (426)
=|+|.||++||+|.-.. ..--||+|+++|.--.
T Consensus 249 ----erVfEIgr~FRNEGid~----tHNPEFTmlE~Y~AYa 281 (502)
T COG1190 249 ----ERVFEIGRNFRNEGIDT----THNPEFTMLEFYQAYA 281 (502)
T ss_pred ----hhheeeccccccCCCcc----ccCcchhhHHHHHHHh
Confidence 39999999999998765 5778999998875443
No 116
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.49 E-value=0.00022 Score=71.90 Aligned_cols=86 Identities=19% Similarity=0.294 Sum_probs=62.7
Q ss_pred CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCC-CCCCCCCccceeEeEcCeeEecCccchHHHHHHHHH
Q psy10612 108 NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNEL-SGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALD 186 (426)
Q Consensus 108 ~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~-~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~ 186 (426)
.....||+-.|+...+..... .....+|+|++.+|+|||+|. ... -+.++|+|.++-+++..- +-.++. .
T Consensus 180 s~~~lLRTHTTpgqirtL~~L-~~~~~~PiRIFsIGRVfRrD~~~Da----THl~eFhQlEGLVVdedV-Sf~DLK---g 250 (533)
T TIGR00470 180 STTLTLRSHMTSGWFITLSSI-IDKRKLPLKLFSIDRCFRREQREDR----SHLMTYHSASCVVVDEEV-SVDDGK---A 250 (533)
T ss_pred hhCcccccCChhHHHHHHHHH-hhcCCCCeEEEeeeeEEecCCCCCC----ccCceeeeEEEEEECCCC-CHHHHH---H
Confidence 356899998888888776542 223568999999999999995 343 589999999998888642 233343 3
Q ss_pred HHHHHHHHcCCe-EEEE
Q psy10612 187 FLRNVYSIFGFT-FNLR 202 (426)
Q Consensus 187 ~~~~il~~lgi~-~~i~ 202 (426)
....+++.||.. ++++
T Consensus 251 vLe~LLr~LG~~~vRFR 267 (533)
T TIGR00470 251 VAEGLLAQFGFTKFRFR 267 (533)
T ss_pred HHHHHHHHhCCceEEec
Confidence 348888999974 5544
No 117
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=97.47 E-value=0.0012 Score=70.07 Aligned_cols=134 Identities=15% Similarity=0.169 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhh-HhHhcccccccc-cceEeeeC--CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSE-NMFSFDVE--NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l-~~~sg~~~~~~~-e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
....+++.+.+++.+...||+|+.|..|.+.+. +..-+. . .+ +.+++... .+.-+||+...+++...++.+.
T Consensus 358 ~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~-~--~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~- 433 (552)
T PRK09616 358 LHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNL-E--PEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK- 433 (552)
T ss_pred CChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCC-C--CCCCeEEEcCCCccchheEeccchHHHHHHHHhcc-
Confidence 334567788889999999999999999999865 654321 1 11 34555543 5567899999999999988765
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEE
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL 201 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i 201 (426)
.++.|+++|++|+||+.+..+. ...+|+.+..+-+.|..-. +-.+......++..+|+++.+
T Consensus 434 -~~~~~~~lFEiG~Vf~~~~~~~----~~~~e~~~l~~~~~g~~~d----f~dlKg~ve~ll~~lgi~~~~ 495 (552)
T PRK09616 434 -HREYPQKIFEIGDVVLIDESTE----TGTRTERKLAAAIAHSEAS----FTEIKSVVQALLRELGIEYEV 495 (552)
T ss_pred -CCCCCeeEEEeeEEEecCCccc----cCcchhhEEEEEEECCCCC----HHHHHHHHHHHHHHcCCeEEE
Confidence 3467999999999998754322 1346888888877775211 333344458888899986433
No 118
>KOG1885|consensus
Probab=97.39 E-value=0.00029 Score=70.26 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
..++.+|+.++|+.+...||.||+||+|... .|+. ..+-....... +.+++||=..+.-+-+++...+
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~i-----aGGA--~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGl---- 293 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMI-----AGGA--TAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGL---- 293 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhccc-----cCcc--ccCceeecccccCcceeeeechHHHHHHHHhccH----
Confidence 4677899999999999999999999998543 2331 12223222222 6779999777766666665432
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHc
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 195 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~l 195 (426)
-|+|+||+.||+|.-.. -.--||+-+++|- |-+.+..+.+....++..+
T Consensus 294 ---drVYEIGr~FRNEGIDl----THNPEFTTcEfY~------AYady~dlm~~TE~l~s~m 342 (560)
T KOG1885|consen 294 ---DRVYEIGRQFRNEGIDL----THNPEFTTCEFYM------AYADYEDLMDMTEELLSGM 342 (560)
T ss_pred ---HHHHHHHHHhhhcCccc----ccCCCcchHHHHH------HHhhHHHHHHHHHHHHHHH
Confidence 38999999999997664 5677899887763 2333334444445555443
No 119
>PLN02788 phenylalanine-tRNA synthetase
Probab=96.78 E-value=0.012 Score=59.37 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHc---CCeEee--cccccchhhHhHhc----ccccccccceEeeeCCceEEEcCCCcHHHHHHHh
Q psy10612 56 FIYNTLVEFIRSEYRKR---GFQEVV--SPNVYNVKLWQTSG----HWAHYSENMFSFDVENETYALKPMNCPGHCLIFD 126 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~---G~~~i~--tP~l~~~~l~~~sg----~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~ 126 (426)
--...+.+.+++.|... ||..++ .|+.....-|..-+ |-.--..+.|.+ +...+||.=+++..++++.
T Consensus 68 HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~---~~~~lLRTHTSa~q~~~l~ 144 (402)
T PLN02788 68 HPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV---DAQTVLRCHTSAHQAELLR 144 (402)
T ss_pred ChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe---cCCccccCCCcHHHHHHHH
Confidence 33455666777777765 999999 56665544444322 211123345555 4578999777777777765
Q ss_pred hhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 127 HRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 127 ~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
+ ..| ++...|.|||+|.-.+ -.+.+|+|.|.-.+...
T Consensus 145 ~------~~~-~~~~~g~VyRrD~iD~----tH~p~FhQ~EG~~v~~~ 181 (402)
T PLN02788 145 A------GHT-HFLVTGDVYRRDSIDA----THYPVFHQMEGVRVFSP 181 (402)
T ss_pred h------CCC-cEEEEeeEeecCCCCc----ccCccceeEEEEEEecc
Confidence 3 123 9999999999998666 68999999999988743
No 120
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=96.64 E-value=0.0056 Score=56.01 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcCCCC
Q psy10612 59 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELP 136 (426)
Q Consensus 59 ~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~~lP 136 (426)
+.+.+.+++.+...||+|+.|..|.+.+.+..-+. + .++..++... .+.-+||++..+++...++.+.. ....|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~-~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~-~~~~~ 78 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDG-G--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLN-RKNKP 78 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHhccC-C--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 45677889999999999999999998866553311 1 2235566554 45567999999999998887643 34579
Q ss_pred ceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-ch------HHHHHHHHHHHHHHHHHcCCe
Q psy10612 137 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QI------GDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 137 ~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~------~~e~~~~~~~~~~il~~lgi~ 198 (426)
+++|++|+||..+.. ..+|.....+-+-|... .. ...+..+......+++.+|++
T Consensus 79 ~~lFEiG~vf~~~~~-------~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~ 140 (198)
T cd00769 79 LRLFEIGRVFLKDED-------GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGII 140 (198)
T ss_pred EeEEEeEeEEecCCC-------CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCe
Confidence 999999999965321 11344444444444321 10 012444455568888888874
No 121
>KOG0554|consensus
Probab=96.25 E-value=0.005 Score=60.59 Aligned_cols=107 Identities=13% Similarity=0.030 Sum_probs=73.3
Q ss_pred eeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--------CceEEEcCCCcHH
Q psy10612 49 FFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--------NETYALKPMNCPG 120 (426)
Q Consensus 49 ~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--------~~~~~LrP~~t~~ 120 (426)
+....-++++.++....++.|...+|..|.||++...+ +. . ..|||.++-. |+...|.-..--.
T Consensus 126 ~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~D----CE---G-aGE~F~vtt~~d~~~~fFg~p~fLTVSgQLh 197 (446)
T KOG0554|consen 126 AKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTND----CE---G-AGEVFQVTTLTDYSKDFFGRPAFLTVSGQLH 197 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccC----CC---C-CcceEEEEecCcccccccCCceEEEEeceeh
Confidence 34556789999999999999999999999999998765 21 2 4577776431 4554543222111
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
+ ..++. . --|.|-+|++||.|.++.. ..+-||+|.++|+-...
T Consensus 198 l-E~~a~----~---LsrvyTfgP~FRAEnS~ts---RHLAEFwMlEaE~AF~~ 240 (446)
T KOG0554|consen 198 L-EAMAC----A---LSRVYTFGPTFRAENSHTS---RHLAEFWMLEAELAFAE 240 (446)
T ss_pred H-HHHHh----h---hcceEeeccceecccCCch---hHHhhhhhhhhHHHHHH
Confidence 1 11111 1 1388999999999998742 46789999999955444
No 122
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=96.16 E-value=0.045 Score=58.08 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhH-hHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW-QTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~-~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
....+.+.+.+++.+...||+|+.|-.|.+.+.+ ..-+. + .++..++... .+.-+||++..+++...++.+.
T Consensus 361 ~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~-~--~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-- 435 (551)
T TIGR00471 361 LKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI-E--DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-- 435 (551)
T ss_pred cChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhcc-C--CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc--
Confidence 3345677888899999999999999999988543 43221 1 1234555544 4556899999999999888765
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEE
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNL 201 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i 201 (426)
.++.|+++|++|++|....... .+.+++.+..+-+.|.. .+ +..+......++..||+++.+
T Consensus 436 ~~~~~~~lFEiG~Vf~~~~~~~----~~e~~~~~l~~~~~g~~--~d--f~d~Kg~ve~ll~~l~i~~~~ 497 (551)
T TIGR00471 436 HHELPQKIFEIGDVVVKDDKSE----TRSRVVTKLAVGITHSE--AN--FNEIKSIVAALARELGIEYEI 497 (551)
T ss_pred cCCCCeeEEEEEEEEEcCCccc----cccceeeEEEEEEECCC--CC--HHHHHHHHHHHHHHcCCceEE
Confidence 3567999999999995422111 13455566666555531 11 333344558888999986443
No 123
>KOG0556|consensus
Probab=95.99 E-value=0.0066 Score=59.85 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCC
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRE 134 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~ 134 (426)
.++..-|...+|+.+...||.+|.||-|.... ++ -+..+|.+.--++..+|.- .+. ++++-.. -.+
T Consensus 228 Friq~gvc~~FRe~L~~kgF~EIhTpKli~as-------SE-GGanvF~v~Yfk~~A~LAQ--SPQ---LyKQMaI-~gd 293 (533)
T KOG0556|consen 228 FRIQAGVCFAFREYLRSKGFVEIHTPKLIGAS-------SE-GGANVFRVSYFKQKAYLAQ--SPQ---LYKQMAI-CGD 293 (533)
T ss_pred eehHHHHHHHHHHHHHhcCcceeccccccccc-------CC-CCceeEEEEeccCcchhhc--ChH---HHHHHHH-hcc
Confidence 45667888999999999999999999886443 12 2567887755444444431 111 2221100 011
Q ss_pred CCceeeeeccccccCCCCCCCCCccceeEeEcCeeE
Q psy10612 135 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI 170 (426)
Q Consensus 135 lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~ 170 (426)
--|+|.||+|||.|.+-. + -.+-||.-.|+|-
T Consensus 294 -f~rVyeIGpVfRAEdSnt-h--RhltEFvGLD~EM 325 (533)
T KOG0556|consen 294 -FERVYEIGPVFRAEDSNT-H--RHLTEFVGLDLEM 325 (533)
T ss_pred -hhheeeecceeeccccch-h--hhhHHhhCcchhh
Confidence 138999999999998763 2 4678898888873
No 124
>KOG2784|consensus
Probab=95.55 E-value=0.017 Score=56.25 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhhHhH------hcccccccccceEeeeC------------------------
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT------SGHWAHYSENMFSFDVE------------------------ 107 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~------sg~~~~~~~e~y~~~d~------------------------ 107 (426)
+.++..-+|++|-..||.|+-|--.+-...|.= ..|-..-..+.|.++|.
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~yg 293 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYG 293 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCcC
Confidence 356778888999999999998887776665531 11211112334444330
Q ss_pred ------------CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc
Q psy10612 108 ------------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 175 (426)
Q Consensus 108 ------------~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~ 175 (426)
.+..+||--.|+--+|++-... ...--|.|+|.|-+|||+|.-.. -.+-||+|.+.-+.+..
T Consensus 294 s~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LA-k~~f~p~K~FSIDrVFRNEtvDa----THLAEFHQVEGviad~g- 367 (483)
T KOG2784|consen 294 SIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLA-KKGFKPAKYFSIDRVFRNETVDA----THLAEFHQVEGVIADKG- 367 (483)
T ss_pred CcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHH-hCCCCcccccchhhhhhccccch----HHHHHHhhhceeeecCC-
Confidence 2457899766666666654332 22234999999999999999887 78899999998766543
Q ss_pred chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 176 QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 176 ~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
-....++ .+...++..+|+.
T Consensus 368 ltLgdLi---g~l~~ff~~lg~t 387 (483)
T KOG2784|consen 368 LTLGDLI---GILMEFFTKLGAT 387 (483)
T ss_pred CcHHHHH---HHHHHHHhccCCc
Confidence 2233333 3347888888874
No 125
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=94.81 E-value=0.13 Score=55.10 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhh-HhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l-~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+.+++.+...||+|+.|-+|.+.+. +..-+. +.-++...++... .+--+||++.-+++...++.+..
T Consensus 397 ~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~-~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~-- 473 (597)
T PLN02265 397 QPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNR-EDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKD-- 473 (597)
T ss_pred CHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcC-CccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhc--
Confidence 33677888899999999999999999998865 654322 1111234555443 44557999999999988876643
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
+++|+|+|++|.||-.+.... .-.+|.....+-+.|.. ++ +..+......++..||++
T Consensus 474 ~~~p~klFEiG~V~~~~~~~~----~~~~e~~~la~~~~g~~--~~--f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 474 APKPIKLFEVSDVVLLDESKD----VGARNSRRLAALYCGTT--SG--FEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred CCCCeeEEEeEeEEecCCccc----CCcchhhEEEEEEECCC--CC--HhhHHHHHHHHHHHcCCc
Confidence 345999999999995332110 11134444444444432 12 222234458888888884
No 126
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=94.71 E-value=0.18 Score=51.44 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=64.5
Q ss_pred CCeEeec--ccccchhhHhHhc----ccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCce--eeeecc
Q psy10612 73 GFQEVVS--PNVYNVKLWQTSG----HWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLR--MADFGV 144 (426)
Q Consensus 73 G~~~i~t--P~l~~~~l~~~sg----~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k--~~~~g~ 144 (426)
||+.++. |+.....-|..-+ |-.--..+-|.+ ++..+||.=+++...+++.+.... ..|++ +...|.
T Consensus 67 gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi---~~~~lLRTHTSa~q~~~~~~~~~~--~~~~~~~~i~~G~ 141 (460)
T TIGR00469 67 LFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI---NEQHLLRAHTSAHELECFQGGLDD--SDNIKSGFLISAD 141 (460)
T ss_pred CeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe---cCCceeCCCCcHHHHHHHHhcccc--CCCcceeeEeecc
Confidence 8988888 9666666665433 221223445666 457899977777777777653221 24888 888899
Q ss_pred ccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 145 LHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 145 ~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
|||++.-.+ -.+..|+|.|.-.+...
T Consensus 142 VYRrD~iDa----tH~p~FHQ~EG~~v~~~ 167 (460)
T TIGR00469 142 VYRRDEIDK----THYPVFHQADGAAIRKR 167 (460)
T ss_pred eeeCCCCcc----ccCccceeeEEEEEecc
Confidence 999998665 68999999997766653
No 127
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=93.72 E-value=0.027 Score=55.14 Aligned_cols=86 Identities=15% Similarity=0.295 Sum_probs=53.4
Q ss_pred ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHH
Q psy10612 109 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 188 (426)
Q Consensus 109 ~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~ 188 (426)
..+.||.-.|.+-+-.+.+ +....++|+|+|.|-+|||+|.+-.. .|+--++-+-+-+++..-..|.- . ..+
T Consensus 181 ~tlTLRSHMTsGWFItLs~-i~~r~~~PlklFSIDRCFRREQ~ED~---shLmtYhSASCVvvde~vtvD~G-K---aVA 252 (536)
T COG2024 181 STLTLRSHMTSGWFITLSE-ILKREDPPLKLFSIDRCFRREQREDA---SHLMTYHSASCVVVDEDVTVDDG-K---AVA 252 (536)
T ss_pred CceehhhhcccceeeeHHH-HHhccCCCceeeehhHHhhhhhhcch---hhhhhhccceEEEEcCccccccc-H---HHH
Confidence 3466666666554433333 33446789999999999999986531 45555666666666553222211 1 224
Q ss_pred HHHHHHcCCe-EEEE
Q psy10612 189 RNVYSIFGFT-FNLR 202 (426)
Q Consensus 189 ~~il~~lgi~-~~i~ 202 (426)
..+|+.+|++ |+.+
T Consensus 253 EglL~qfGFe~F~Fr 267 (536)
T COG2024 253 EGLLRQFGFEKFRFR 267 (536)
T ss_pred HHHHHHhCccceeec
Confidence 7888999996 6654
No 128
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=93.63 E-value=0.18 Score=52.22 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=54.2
Q ss_pred ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCccchHHHHHHHHHH
Q psy10612 109 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDF 187 (426)
Q Consensus 109 ~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~ 187 (426)
..-+||+..++++...++.++. ..+.|+++|++|+|||.+.. .. .++..+.+... + ..++..+ +..+...
T Consensus 182 ~~svLRtSLlPGLL~tLs~Nl~-Rg~~piRLFEIGRVFr~d~~eE~----t~La~llsGs~-W-~~~e~vD--FfDlKGi 252 (529)
T PRK06253 182 SRLTLRSHMTSGWFITLSSLLE-KRPLPIKLFSIDRCFRREQREDA----SRLMTYHSASC-V-IADEDVT--VDDGKAV 252 (529)
T ss_pred ccCccccchHHHHHHHHHHHHh-CCCCCEEEEEEeeEEecCCccch----hheeEEEEccc-c-ccCCCCC--HHHHHHH
Confidence 4568999999999888876653 45789999999999987531 21 24444444411 2 2222222 3334455
Q ss_pred HHHHHHHcCCe-EEE
Q psy10612 188 LRNVYSIFGFT-FNL 201 (426)
Q Consensus 188 ~~~il~~lgi~-~~i 201 (426)
+..+++.+|++ +.+
T Consensus 253 LE~LL~~LGI~~i~f 267 (529)
T PRK06253 253 AEGLLSQFGFTKFKF 267 (529)
T ss_pred HHHHHHHcCCCeEEE
Confidence 68889999986 444
No 129
>KOG0555|consensus
Probab=92.11 E-value=0.33 Score=48.07 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
-.+++..+.+.+|+.+...||.||.+|+|+.+.+= | +.-+|++.-=|++.+|.-. ..++.......
T Consensus 242 vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVE---G-----GsTLFkldYyGEeAyLTQS-----SQLYLEtclpA- 307 (545)
T KOG0555|consen 242 VLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVE---G-----GSTLFKLDYYGEEAYLTQS-----SQLYLETCLPA- 307 (545)
T ss_pred HHHHHHHHHHHHHHHHHhcCceecCCCceEEEEec---C-----cceEEeecccCchhhccch-----hHHHHHHhhhh-
Confidence 35778889999999999999999999999988762 2 4556776544666666321 12332221111
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
--..|.|++.||.|.+..| -.+-||+..++|.-..+
T Consensus 308 --lgdvy~I~~SyRAEkSrTR---RHLsEytHVEaE~aflt 343 (545)
T KOG0555|consen 308 --LGDVYCIQQSYRAEKSRTR---RHLSEYTHVEAECAFLT 343 (545)
T ss_pred --cCceeEecHhhhhhhhhhh---hhhhhheeeeeeccccc
Confidence 1378999999999987632 45789999999864443
No 130
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=90.96 E-value=1.4 Score=48.18 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
+....+.+.+.+++.+...||+|+.|-.|.+.+.+ .++..++... .+.-+||++.-+++...++.+..
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~---------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~- 465 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF---------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLK- 465 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhc---------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33445677888899999999999999999888642 1234555544 45568999999999998876643
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc--------cchHHHHHHHHHHHHHHHHHcCCeEE
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV--------EQIGDEIVGALDFLRNVYSIFGFTFN 200 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~--------~~~~~e~~~~~~~~~~il~~lgi~~~ 200 (426)
....|+++|++|.||-... . + .+|-....+-+.|.. ......+..+......++..+|+++.
T Consensus 466 r~~~~~rlFEiG~Vf~~~~--~--~---~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i~~~ 535 (704)
T CHL00192 466 QGNSTLEGFEIGHVFNLDS--S--S---IIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNLPIY 535 (704)
T ss_pred cCCCCEeEEEeeeeEcCCC--c--c---ccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCCcEE
Confidence 3457999999999994321 1 0 123333333344421 00011244445556888889998643
No 131
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=90.52 E-value=0.74 Score=49.86 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
..-.+.....+++.+...||+|+.|-.|.+.+.....+... ++...+... .+.-+||++.-+++...+..+. .
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~---~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~--~ 424 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLEN---DEALELANPISEEYSVLRTSLLPGLLEALSYNK--N 424 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCC---CcceEecCCcchhHHHHHHHHHHHHHHHHHHhh--c
Confidence 44566778889999999999999999999999887654311 113333322 3445799998888888887654 3
Q ss_pred CCCC-ceeeeeccccccC
Q psy10612 133 RELP-LRMADFGVLHRNE 149 (426)
Q Consensus 133 ~~lP-~k~~~~g~~fR~E 149 (426)
++.| +++|++|.+|-.+
T Consensus 425 r~~~~~~iFEiG~v~~~~ 442 (650)
T COG0072 425 RKNPDVRIFEIGDVFVKD 442 (650)
T ss_pred cCCCCeeEEEeeeeEecC
Confidence 5678 9999999999975
No 132
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=84.24 E-value=2.1 Score=47.71 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcCCCCce
Q psy10612 61 LVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELPLR 138 (426)
Q Consensus 61 i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k 138 (426)
..+.+++.+...||+|+.|-.|.+.+.+..-+. +. .+...++... .+.=+||+..-+++...++.+.. ....|++
T Consensus 496 ~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~-~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~-~~~~~~~ 572 (798)
T TIGR00472 496 LLRKLRTLLVGLGLNEVITYSLVSSEKAEKFNF-PK-LENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQN-RKNKDVK 572 (798)
T ss_pred HHHHHHHHHHHCCCcEEeccccCCHHHHHhhcC-CC-CCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHh-CCCCCEe
Confidence 335778899999999999999998865554331 11 1124566554 44557999999999998876643 3456899
Q ss_pred eeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc---------chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 139 MADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE---------QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 139 ~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~---------~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
+|++|.||.... . . .+|.....+-+-|... ..+ +..+......++..+|+.
T Consensus 573 lFEiG~V~~~~~--~----~-~~e~~~La~~~~g~~~~~~~~~~~~~~d--f~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 573 IFEIGKVFAKDG--L----G-VKEQLRLAILISGEKNPSSWNHKEEKVD--FYDLKGDVESLLELLGLS 632 (798)
T ss_pred EEeeecccCCCC--C----C-cchhhEEEEEEECCCCcccccCCCCcCC--hHHHHHHHHHHHHHcCCC
Confidence 999999994321 0 0 2233333333333210 112 334445567888888774
No 133
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=83.72 E-value=1.7 Score=48.40 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
.....+.+.+.+++.+...||+|+.|-.|.+.+....-+. + .+..++... .+.-+||++.-+++...+..+..
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~-~---~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~- 559 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGL-N---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLN- 559 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCC-C---CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHh-
Confidence 3344566677889999999999999999998866543221 1 133445443 44568999999999998876653
Q ss_pred cCCCCceeeeecccccc
Q psy10612 132 WRELPLRMADFGVLHRN 148 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~ 148 (426)
....|+++|++|+||..
T Consensus 560 ~~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 560 RGNKDVALFEIGRVFLP 576 (791)
T ss_pred CCCCCEeEEeeeeeeCC
Confidence 34568999999999964
No 134
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=73.80 E-value=11 Score=35.06 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=45.0
Q ss_pred CCCceEEEEeCCC------------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEE
Q psy10612 320 ISPRQGIVIPVAE------------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMV 379 (426)
Q Consensus 320 ~ap~~V~Vi~~~~------------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~ii 379 (426)
+.|-+|+++|-+. ...+....+.+.|+++||+|.+..+. -..|++.|.+.|++.+=+
T Consensus 82 ~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP---d~~qi~~A~~~GAd~VEL 150 (234)
T cd00003 82 VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP---DPEQIEAAKEVGADRVEL 150 (234)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhCcCEEEE
Confidence 4788999999754 13566778999999999999877632 357999999999997643
No 135
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=73.02 E-value=12 Score=35.01 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHH
Q psy10612 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAE------------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRN 368 (426)
Q Consensus 301 leRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~------------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~ 368 (426)
.+.++...++ +.|.+|.++|-+. ...+....+.+.|+++||+|-+..+. -..+++.
T Consensus 72 ~~emi~ia~~---------vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP---~~~qi~~ 139 (237)
T TIGR00559 72 TEEMIRIAEE---------IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA---DKDQISA 139 (237)
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHH
Confidence 4556655544 4688999999754 13466778899999999999977632 3579999
Q ss_pred HHHhCCcEEEE
Q psy10612 369 AQISQYNFIMV 379 (426)
Q Consensus 369 A~~~gip~~ii 379 (426)
|.+.|++.+=+
T Consensus 140 A~~~GAd~VEL 150 (237)
T TIGR00559 140 AAEVGADRIEI 150 (237)
T ss_pred HHHhCcCEEEE
Confidence 99999997644
No 136
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=71.76 E-value=14 Score=34.69 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHH
Q psy10612 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAE------------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRN 368 (426)
Q Consensus 301 leRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~------------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~ 368 (426)
.+.++...++ +.|-+|+++|-+. ...+....+.+.|+++||+|-+..+ .--.+++.
T Consensus 75 ~~em~~ia~~---------~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid---P~~~qi~~ 142 (239)
T PRK05265 75 TEEMLDIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID---PDPEQIEA 142 (239)
T ss_pred CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHH
Confidence 4556655544 4688999999754 1356677899999999999987763 24579999
Q ss_pred HHHhCCcEEEEE
Q psy10612 369 AQISQYNFIMVV 380 (426)
Q Consensus 369 A~~~gip~~iii 380 (426)
|.+.|++.+=+-
T Consensus 143 A~~~GAd~VELh 154 (239)
T PRK05265 143 AAEVGADRIELH 154 (239)
T ss_pred HHHhCcCEEEEe
Confidence 999999976443
No 137
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=71.40 E-value=12 Score=35.16 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHH
Q psy10612 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAE------------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRN 368 (426)
Q Consensus 301 leRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~------------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~ 368 (426)
.+.++...++ +.|-+|+++|-+. ...+....+.++|+++||+|-+..+. --.+++.
T Consensus 73 t~e~~~ia~~---------~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP---~~~qi~~ 140 (239)
T PF03740_consen 73 TEEMVDIALK---------VKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP---DPEQIEA 140 (239)
T ss_dssp SHHHHHHHHH---------H--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S----HHHHHH
T ss_pred CHHHHHHHHh---------CCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC---CHHHHHH
Confidence 4556665555 3678999999653 23577888999999999999877632 3579999
Q ss_pred HHHhCCcEEE
Q psy10612 369 AQISQYNFIM 378 (426)
Q Consensus 369 A~~~gip~~i 378 (426)
|.+.|++++=
T Consensus 141 A~~~Gad~VE 150 (239)
T PF03740_consen 141 AKELGADRVE 150 (239)
T ss_dssp HHHTT-SEEE
T ss_pred HHHcCCCEEE
Confidence 9999999653
No 138
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=64.45 E-value=42 Score=37.78 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCeEeecccccchh----hHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCC
Q psy10612 61 LVEFIRSEYRKRGFQEVVSPNVYNVK----LWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELP 136 (426)
Q Consensus 61 i~~~i~~~~~~~G~~~i~tP~l~~~~----l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP 136 (426)
|.+.+.+.|++.|...+....+.|.+ +|..+ -|..|++ +|.. ..+.|
T Consensus 2 iR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nA--------Gm~~fk~-----------------~f~G----~~~p~ 52 (851)
T TIGR00344 2 IRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNA--------GMAQFKP-----------------IFTG----IVKPP 52 (851)
T ss_pred HHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeecc--------chhhhhH-----------------HhcC----CCCCC
Confidence 55677788899999999988888854 33222 2333332 1211 11112
Q ss_pred -ceeeeeccccccCCCCCCCCC-cc-ceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHH-cCCe
Q psy10612 137 -LRMADFGVLHRNELSGALTGL-TR-VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSI-FGFT 198 (426)
Q Consensus 137 -~k~~~~g~~fR~E~~~~~~Gl-~R-~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~-lgi~ 198 (426)
-++...++|.|----.. -|. .| .-=|.|.+-++||.-- -.|. ++++|+++.. |||+
T Consensus 53 ~~r~~~~QkCiR~nDld~-VG~t~rHhTfFEMlGnfSFgdYf--K~ea---i~~awe~lT~~~~i~ 112 (851)
T TIGR00344 53 SNRLVNAQPCIRLNDIEN-VGRTARHHTFFEMLGNFSFGDYF--KEEA---IAFAWELLTSVLGLD 112 (851)
T ss_pred CCCcccccccccccchhh-hcCCCcchhhHHhhcccchhhhh--HHHH---HHHHHHHHhhhcCCC
Confidence 35666677888421000 111 12 1236799999998632 2232 4667999966 9996
No 139
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=55.62 E-value=38 Score=31.31 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=43.7
Q ss_pred CCCceEEEEeCCC------------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEE
Q psy10612 320 ISPRQGIVIPVAE------------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMV 379 (426)
Q Consensus 320 ~ap~~V~Vi~~~~------------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~ii 379 (426)
..|-+|.++|-+. ...+....+.++|.+.|++|.+..+ .-..+++.|...|+|++=+
T Consensus 83 ~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD---~d~~qi~aa~~~gA~~IEL 151 (243)
T COG0854 83 TKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID---PDPEQIEAAAEVGAPRIEL 151 (243)
T ss_pred cCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeC---CCHHHHHHHHHhCCCEEEE
Confidence 3688999999653 1245566788999999999997763 2457999999999997643
No 140
>PLN02900 alanyl-tRNA synthetase
Probab=46.53 E-value=5e+02 Score=29.72 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCC-C-
Q psy10612 59 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL-P- 136 (426)
Q Consensus 59 ~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~l-P- 136 (426)
..|.+.+.+.|++.|...+....+.|.+ ..+-- -...-|..|++ +|........++ |
T Consensus 14 ~eiR~~Fl~FF~~~gH~~v~s~slvp~~--dptll--ftnAGm~~Fk~-----------------~f~G~~~p~~~~~~~ 72 (936)
T PLN02900 14 DRIRRTFLSFFESKGHTFLPSSPLVPVD--DPTLL--FTNAGMNQFKP-----------------IFLGTADPNTPLRKL 72 (936)
T ss_pred HHHHHHHHHHHHhCCCEEeCCCCcCCCC--CCCee--eeecchhhhhh-----------------hhcCCCCCCCCCCCC
Confidence 5788888899999999999988888843 10000 00122333432 221111110011 2
Q ss_pred ceeeeecccccc-----CCCCCCCCC-cc-ceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHH-cCCe
Q psy10612 137 LRMADFGVLHRN-----ELSGALTGL-TR-VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSI-FGFT 198 (426)
Q Consensus 137 ~k~~~~g~~fR~-----E~~~~~~Gl-~R-~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~-lgi~ 198 (426)
-|+...++|.|- +.-. -|. .| .-=|.|.+-.+||.-- -.|. +.++|+++.+ |||+
T Consensus 73 ~R~~~~QkCiR~gGKHnDlen--VG~t~rHhTfFEMlGnfSfgdYf--K~ea---I~~awe~lT~~l~i~ 135 (936)
T PLN02900 73 PRATNTQKCIRAGGKHNDLDD--VGKDTYHHTFFEMLGNWSFGDYF--KKEA---IGWAWELLTKVYGLP 135 (936)
T ss_pred CceeeecccccCCCCCCCHhh--ccCCCCchHHHHhhhccchhhhh--HHHH---HHHHHHHHHHhcCCC
Confidence 367777899997 2111 111 12 2236788989998532 1222 4667999976 9996
No 141
>PLN03194 putative disease resistance protein; Provisional
Probab=45.04 E-value=1.3e+02 Score=27.10 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=41.4
Q ss_pred CCceEEEEeCCCCh-HHHHHHHHHHHHHCCCeEEEcCC---CCCCHHHHHHHHHHhCCcE-EEEEecC
Q psy10612 321 SPRQGIVIPVAEPF-NEYADQVKNKIFAAGFMCDADLD---SSDTLNKKIRNAQISQYNF-IMVVGEK 383 (426)
Q Consensus 321 ap~~V~Vi~~~~~~-~~~a~~ia~~Lr~~Gi~v~~d~~---~~~~lgkk~~~A~~~gip~-~iiiG~~ 383 (426)
.++||.|---+.+. ...+.-|+..|+++||+|-+|.. ++.++...+..|=+ ...+ ++|+.++
T Consensus 25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIe-eSri~IvVfS~~ 91 (187)
T PLN03194 25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR-NCKVGVAVFSPR 91 (187)
T ss_pred CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHH-hCeEEEEEECCC
Confidence 46899887666543 45688999999999999999862 24456656655533 3344 4455543
No 142
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=43.83 E-value=22 Score=34.31 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=7.5
Q ss_pred chHHHHHHHH
Q psy10612 300 SVERMVAILT 309 (426)
Q Consensus 300 gleRll~~l~ 309 (426)
|+|||+.+|.
T Consensus 271 ~ld~l~~~l~ 280 (281)
T PRK12293 271 YTDNLIEILL 280 (281)
T ss_pred eHHHHHHHhh
Confidence 5999887763
No 143
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=39.78 E-value=1.1e+02 Score=26.69 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCC---CHHHHHHHHHHhCCcEEEEEecCc
Q psy10612 334 FNEYADQVKNKIFAAGFMCDADLDSSD---TLNKKIRNAQISQYNFIMVVGEKE 384 (426)
Q Consensus 334 ~~~~a~~ia~~Lr~~Gi~v~~d~~~~~---~lgkk~~~A~~~gip~~iiiG~~E 384 (426)
..+.|..+.+.|++.|++|.+.-+ .. ++..+.+.|+..++-+.|-|=-+.
T Consensus 26 ~l~ia~~l~~~L~~~g~~V~~tr~-~d~~~~l~~R~~~an~~~ad~~isiH~na 78 (175)
T PF01520_consen 26 NLDIALRLKKELEKHGIKVYLTRD-NDSDVSLQERAALANSWGADLFISIHFNA 78 (175)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESSS-SSHCCCHHHHHHHHHHTTSSEEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCC-CCCCCCHHHHHHHHHhcccCEEEEEeecC
Confidence 356788899999999999988642 33 799999999999999998886543
No 144
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.42 E-value=1.2e+02 Score=26.67 Aligned_cols=62 Identities=5% Similarity=-0.015 Sum_probs=41.9
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEE--c---CCCCCCHHHHHHHHHHhCCcEEEEEec
Q psy10612 321 SPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDA--D---LDSSDTLNKKIRNAQISQYNFIMVVGE 382 (426)
Q Consensus 321 ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~--d---~~~~~~lgkk~~~A~~~gip~~iiiG~ 382 (426)
.+..|+|+.-..+.-..+..+|+.|.+.|++|.+ - .........+++.+...|++++-....
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 90 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSD 90 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCG
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecccc
Confidence 3456767665555566788999999999999987 1 112334778888999999886654433
No 145
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=38.49 E-value=87 Score=27.80 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHH-hCC--cEE
Q psy10612 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQI-SQY--NFI 377 (426)
Q Consensus 301 leRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~-~gi--p~~ 377 (426)
.+++.+.+.|.. .+-..++|++-+. ..+++.-+...|+....-- .+.++++|+.|-+ .++ +-+
T Consensus 48 tpe~~~W~~e~k-------~~gi~v~vvSNn~-----e~RV~~~~~~l~v~fi~~A--~KP~~~~fr~Al~~m~l~~~~v 113 (175)
T COG2179 48 TPELRAWLAELK-------EAGIKVVVVSNNK-----ESRVARAAEKLGVPFIYRA--KKPFGRAFRRALKEMNLPPEEV 113 (175)
T ss_pred CHHHHHHHHHHH-------hcCCEEEEEeCCC-----HHHHHhhhhhcCCceeecc--cCccHHHHHHHHHHcCCChhHE
Confidence 677777766642 1334566654322 2345666666666655543 5678999999874 444 459
Q ss_pred EEEecCccC
Q psy10612 378 MVVGEKEKS 386 (426)
Q Consensus 378 iiiG~~E~~ 386 (426)
++||++-..
T Consensus 114 vmVGDqL~T 122 (175)
T COG2179 114 VMVGDQLFT 122 (175)
T ss_pred EEEcchhhh
Confidence 999987543
No 146
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=38.11 E-value=1.8e+02 Score=22.93 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHH
Q psy10612 335 NEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGK 414 (426)
Q Consensus 335 ~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~ 414 (426)
.-.+..|.+.+++.|+.+.+.-.....+...+...+-..+-.+|++|+....... .....-...++++.+..-..
T Consensus 15 ~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~~r-----f~gk~v~~~~~~~~l~~~~~ 89 (96)
T cd05569 15 YMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDDER-----FAGKRVYEVSVAEAIKDAEA 89 (96)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCchhh-----hCCCeEEEecHHHHHHHHHH
Confidence 4456788888899999998875322233444544555667789999987654421 22334457788877765554
Q ss_pred HHh
Q psy10612 415 LKE 417 (426)
Q Consensus 415 ~~~ 417 (426)
.++
T Consensus 90 vl~ 92 (96)
T cd05569 90 VIE 92 (96)
T ss_pred HHH
Confidence 443
No 147
>PRK03972 ribosomal biogenesis protein; Validated
Probab=33.99 E-value=3.1e+02 Score=25.28 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=52.6
Q ss_pred EEeCCCChHHHHHHHHHHHHHCCC-eEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCC
Q psy10612 327 VIPVAEPFNEYADQVKNKIFAAGF-MCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNI 398 (426)
Q Consensus 327 Vi~~~~~~~~~a~~ia~~Lr~~Gi-~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~ 398 (426)
+|..+..-...+.+.+++|... + .+..-.|.+.++++-++.|...|..-+|||++.--.-+.++|-++-.+
T Consensus 3 LITTSr~PS~rtr~F~keL~~v-~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~g 74 (208)
T PRK03972 3 LITTSHRPTRRTRSFGHDLERV-FPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPE 74 (208)
T ss_pred EEECCCCccHHHHHHHHHHHHh-CCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCC
Confidence 4455555566788888888874 3 334444445679999999999999999999998777788888886533
No 148
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=32.30 E-value=1.8e+02 Score=25.25 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=38.7
Q ss_pred eEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCC-CCCH---HHHHHHHHHhCCcEEEEEec
Q psy10612 324 QGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDS-SDTL---NKKIRNAQISQYNFIMVVGE 382 (426)
Q Consensus 324 ~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~-~~~l---gkk~~~A~~~gip~~iiiG~ 382 (426)
+|.|+.-+....+.+.+++..|++.|+.+++..-. .+.. -+-++.++..|+..+|.+..
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG 64 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAG 64 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECC
Confidence 67888877788899999999999999888765311 2333 33444455557765555443
No 149
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=30.90 E-value=8.3e+02 Score=27.71 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCC-c
Q psy10612 59 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELP-L 137 (426)
Q Consensus 59 ~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP-~ 137 (426)
+.|.+.+.+.|++.|...+..-.+.|.. ..+-- -...-|..|++ +|... .+.| -
T Consensus 5 ~eiR~~fl~fF~~~~H~~v~s~~lvp~~--d~~ll--f~nAGm~~fk~-----------------~f~g~----~~p~~~ 59 (865)
T PRK00252 5 AEIRQKFLDFFESKGHTVVPSASLVPKN--DPTLL--FTNAGMVQFKD-----------------YFLGQ----EKPPYP 59 (865)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcCCCC--CCCee--eeccchhhhhH-----------------HhcCC----CCCCCC
Confidence 4677888889999999999988887743 10000 00112333322 22211 1112 2
Q ss_pred eeeeeccccccCCCCCCCCC-cc-ceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHH-cCCe
Q psy10612 138 RMADFGVLHRNELSGALTGL-TR-VRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSI-FGFT 198 (426)
Q Consensus 138 k~~~~g~~fR~E~~~~~~Gl-~R-~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~-lgi~ 198 (426)
|+.-.++|-|-.--.. -|. .| .-=|.|.+-++||.-- -.|. ++++++++.+ |||+
T Consensus 60 r~~~~QkCiR~nDld~-VG~t~rHhTfFEMlGn~sfgdYf--K~ea---i~~awe~lt~~~~i~ 117 (865)
T PRK00252 60 RATTSQKCIRTNDLEN-VGYTARHHTFFEMLGNFSFGDYF--KEEA---IEWAWELLTSVLGLP 117 (865)
T ss_pred Ccccccccccccchhh-ccCCCCchHHHHHhcccchhhhh--HHHH---HHHHHHHHHHHhCCC
Confidence 5666677888421100 011 12 1226788889998532 2232 4567999855 8996
No 150
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=29.20 E-value=2.9e+02 Score=23.97 Aligned_cols=91 Identities=10% Similarity=0.008 Sum_probs=50.8
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHH------CCCeEEEcCCCCCCHHHHHHHHH---HhCCcEEEEEecCccCCCeEEEE
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFA------AGFMCDADLDSSDTLNKKIRNAQ---ISQYNFIMVVGEKEKSSNTVNVR 393 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~------~Gi~v~~d~~~~~~lgkk~~~A~---~~gip~~iiiG~~E~~~~~v~vk 393 (426)
.+|+.|..+. .+...+..+.... ..+.+..|. ...+.+++.-.. ...+|..++|.+ +|+|.-+
T Consensus 64 v~vv~Is~d~--~~~~~~~~~~~~~~~~~~~~~f~~l~D~--~~~~~~~~gv~~~~~~~~~p~~~lID~----~G~I~~~ 135 (173)
T cd03015 64 AEVLGVSTDS--HFSHLAWRNTPRKEGGLGKINFPLLADP--KKKISRDYGVLDEEEGVALRGTFIIDP----EGIIRHI 135 (173)
T ss_pred CEEEEEecCC--HHHHHHHHHhhhhhCCccCcceeEEECC--chhHHHHhCCccccCCceeeEEEEECC----CCeEEEE
Confidence 3455554433 2233344444432 346666765 566777664221 124678999974 4777777
Q ss_pred EccCCeeeeecHHHHHHHHHHHHhhcccc
Q psy10612 394 TRDNIVHGEFSVDDVITRFGKLKENRTLK 422 (426)
Q Consensus 394 ~~~~~~q~~v~~~el~~~i~~~~~~~~~~ 422 (426)
...... ..-+.+++.+.|+.+.....++
T Consensus 136 ~~~~~~-~~~~~~~il~~l~~~~~~~~~~ 163 (173)
T cd03015 136 TVNDLP-VGRSVDETLRVLDALQFVEEHG 163 (173)
T ss_pred EecCCC-CCCCHHHHHHHHHHhhhhhhcC
Confidence 754432 2236788888887765555443
No 151
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=28.60 E-value=2.1e+02 Score=24.75 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCC--CCCHHHHHHHHHHhCCcEEEEEecCcc
Q psy10612 334 FNEYADQVKNKIFAAGFMCDADLDS--SDTLNKKIRNAQISQYNFIMVVGEKEK 385 (426)
Q Consensus 334 ~~~~a~~ia~~Lr~~Gi~v~~d~~~--~~~lgkk~~~A~~~gip~~iiiG~~E~ 385 (426)
..+.+..+...|++.|++|.+.-.. ..++..+...|+..+.-+.|-+=-+..
T Consensus 27 ~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~ 80 (172)
T cd02696 27 NLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAA 80 (172)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCC
Confidence 4577888999999999999765321 247999999999999999888865543
No 152
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=26.98 E-value=1e+02 Score=25.35 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=24.5
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHHCCCeEEE
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDA 354 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~ 354 (426)
.++.|+..+.. ...|.+.++.|++.|+++.+
T Consensus 10 ~di~iia~G~~-~~~al~A~~~L~~~Gi~~~v 40 (124)
T PF02780_consen 10 ADITIIAYGSM-VEEALEAAEELEEEGIKAGV 40 (124)
T ss_dssp SSEEEEEETTH-HHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEeehHH-HHHHHHHHHHHHHcCCceeE
Confidence 47888888764 46788999999999988763
No 153
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=26.87 E-value=2.6e+02 Score=26.54 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=42.5
Q ss_pred HHHHHHCCCeEEEcCCCCC--CHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 342 KNKIFAAGFMCDADLDSSD--TLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 342 a~~Lr~~Gi~v~~d~~~~~--~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
...+++.|+.+.+--+++. ....|+.-|..+|||.++|=-+.. ..+ ....-+++++++++.+.+
T Consensus 190 ~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-~~~----------~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 190 KALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-IPG----------VAIFDDISQLNQFVARLL 255 (256)
T ss_pred HHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-CCC----------CccCCCHHHHHHHHHHhc
Confidence 3456677898887754333 478999999999999877655542 221 112237788888877654
No 154
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=26.83 E-value=3.5e+02 Score=22.08 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=40.2
Q ss_pred HHHHH-HHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEE----------------ecCccCCCeEEEEEccCCeeee
Q psy10612 340 QVKNK-IFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVV----------------GEKEKSSNTVNVRTRDNIVHGE 402 (426)
Q Consensus 340 ~ia~~-Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iii----------------G~~E~~~~~v~vk~~~~~~q~~ 402 (426)
.+++. ++..|+.+.... . ... ++..-..|.|.++.+ |-+ .++.+.|.|-.+++...
T Consensus 48 ~l~~~~a~~~G~~~~~~~--~-~~~--~~~~l~~~~Pvi~~~~~~~~~~~~gH~vVv~g~~--~~~~~~i~DP~~~~~~~ 120 (141)
T cd02549 48 PIVSAAARKYGLVVRPLT--G-LLA--LLRQLAAGHPVIVSVNLGVSITPSGHAMVVIGYD--RKGNVYVNDPGGGRRLV 120 (141)
T ss_pred HHHHHHHhhCCCcEEECC--C-HHH--HHHHHHCCCeEEEEEecCcccCCCCeEEEEEEEc--CCCCEEEECCCCCcCEE
Confidence 44455 556666555432 1 111 444445566655544 433 36778999988887779
Q ss_pred ecHHHHHHHHH
Q psy10612 403 FSVDDVITRFG 413 (426)
Q Consensus 403 v~~~el~~~i~ 413 (426)
++.+++.+.-.
T Consensus 121 ~~~~~f~~~w~ 131 (141)
T cd02549 121 VSFDEFEKAWK 131 (141)
T ss_pred EeHHHHHHHHH
Confidence 99998876544
No 155
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=26.11 E-value=5.5e+02 Score=24.06 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCeEeecccccchh----hHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCC
Q psy10612 60 TLVEFIRSEYRKRGFQEVVSPNVYNVK----LWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 135 (426)
Q Consensus 60 ~i~~~i~~~~~~~G~~~i~tP~l~~~~----l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~l 135 (426)
.|.+.+.+.|++.|...+....|.+.+ +|..+| |..|++ ++... ...
T Consensus 3 eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAG--------M~~Fkp-----------------~f~G~----~~p 53 (232)
T cd00673 3 EIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAG--------MNQFKP-----------------IFLGE----VPP 53 (232)
T ss_pred HHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccc--------hhhhhH-----------------HhcCC----CCC
Confidence 567778888899999999988887654 332222 322321 22111 111
Q ss_pred C-ceeeeeccccccCCCCCCCCC-c-cceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHH-cCCe
Q psy10612 136 P-LRMADFGVLHRNELSGALTGL-T-RVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSI-FGFT 198 (426)
Q Consensus 136 P-~k~~~~g~~fR~E~~~~~~Gl-~-R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~-lgi~ 198 (426)
| -++...++|.|----.. -|. . ..-=|.|.+-.+||.--. .|. ++++++++.+ |||+
T Consensus 54 ~~~r~~~~QkCiR~~Dien-VG~t~rHhTfFEMLGNfSFgdYFK--~ea---I~~awe~LT~~l~l~ 114 (232)
T cd00673 54 PANRLVNSQKCIRAGDIDN-VGKTGRHHTFFEMLGNFSFGDYFK--EEA---IAFAWELLTEVLGLP 114 (232)
T ss_pred CCCceeeeeeceecCChhh-ccccccchhhhhhhcccchhhhhH--HHH---HHHHHHHHHhhcCCC
Confidence 2 36666677888321100 010 1 122377999999985322 222 3556888854 8996
No 156
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=25.98 E-value=2.5e+02 Score=25.19 Aligned_cols=85 Identities=9% Similarity=0.011 Sum_probs=47.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHH---HCCCeEEEcCCCCCCHHHHHHHH-HHhCC--cEEEEEecCccCCCeEEEEEccCC
Q psy10612 325 GIVIPVAEPFNEYADQVKNKIF---AAGFMCDADLDSSDTLNKKIRNA-QISQY--NFIMVVGEKEKSSNTVNVRTRDNI 398 (426)
Q Consensus 325 V~Vi~~~~~~~~~a~~ia~~Lr---~~Gi~v~~d~~~~~~lgkk~~~A-~~~gi--p~~iiiG~~E~~~~~v~vk~~~~~ 398 (426)
+.|+.++.+......+.++..+ ...+.+..|. +.++.+++.-- +..|+ |..+||++ +|+|.-......
T Consensus 66 ~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~----~G~I~~~~~~~~ 139 (187)
T PRK10382 66 VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDP----QGIIQAIEVTAE 139 (187)
T ss_pred CEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECC----CCEEEEEEEeCC
Confidence 4444444433333344444432 2334666664 67788777632 23466 99999974 467666654332
Q ss_pred eeeeecHHHHHHHHHHHH
Q psy10612 399 VHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 399 ~q~~v~~~el~~~i~~~~ 416 (426)
.. .-+.+++.+.|+.+-
T Consensus 140 ~~-~~~~~eil~~l~alq 156 (187)
T PRK10382 140 GI-GRDASDLLRKIKAAQ 156 (187)
T ss_pred CC-CCCHHHHHHHHHhhh
Confidence 22 237888888776443
No 157
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=25.45 E-value=98 Score=25.30 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=21.6
Q ss_pred eeccchHHHHHHHHHHHHHHHHH-cCCeEeec
Q psy10612 49 FFQTKGAFIYNTLVEFIRSEYRK-RGFQEVVS 79 (426)
Q Consensus 49 ~~lP~~~~~~~~i~~~i~~~~~~-~G~~~i~t 79 (426)
.|+|.+..+++++.+.|++.+.+ .|++.|..
T Consensus 61 ~WF~R~qe~qd~vA~~It~~v~~~~g~~~V~V 92 (108)
T PF08921_consen 61 LWFDRGQEVQDKVAQAITEHVKKANGYQDVAV 92 (108)
T ss_dssp EES---HHHHHHHHHHHHHHHHHH-TT---EE
T ss_pred EEecCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 49999999999999999999988 89887653
No 158
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.96 E-value=2.5e+02 Score=26.65 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=8.2
Q ss_pred HHHHHHHHCCCeEEEcC
Q psy10612 340 QVKNKIFAAGFMCDADL 356 (426)
Q Consensus 340 ~ia~~Lr~~Gi~v~~d~ 356 (426)
.++.-|+++++...+|-
T Consensus 57 ~l~~~l~e~~i~llIDA 73 (257)
T COG2099 57 GLAAFLREEGIDLLIDA 73 (257)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 34444455555555443
No 159
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=24.24 E-value=3.5e+02 Score=22.40 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=31.2
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHH---hCCcEEEEEecC
Q psy10612 322 PRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQI---SQYNFIMVVGEK 383 (426)
Q Consensus 322 p~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~---~gip~~iiiG~~ 383 (426)
..++.|.............+ ....++.+...- +.++|.|+.+|-. .|..-+++||.+
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~Q~--g~dLG~Rm~~a~~~~~~g~~~vvliGsD 69 (122)
T PF09837_consen 10 GADVVLAYTPDGDHAAFRQL---WLPSGFSFFPQQ--GGDLGERMANAFQQAARGYEPVVLIGSD 69 (122)
T ss_dssp SSEEEEEE----TTHHHHHH---HH-TTSEEEE----SSSHHHHHHHHHHHHHTT-SEEEEE-SS
T ss_pred CcCEEEEEcCCccHHHHhcc---ccCCCCEEeecC--CCCHHHHHHHHHHHHHcCCCcEEEEcCC
Confidence 45666665544333322222 445577777764 7899999888775 457888999865
No 160
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=23.05 E-value=3.6e+02 Score=22.06 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=34.4
Q ss_pred ceEEEEeCCC--ChHHHHHHHHHHHHHCCCeEEEcCCCC-CCHHHHHHHHHHhCCcEEEEEecCccCC
Q psy10612 323 RQGIVIPVAE--PFNEYADQVKNKIFAAGFMCDADLDSS-DTLNKKIRNAQISQYNFIMVVGEKEKSS 387 (426)
Q Consensus 323 ~~V~Vi~~~~--~~~~~a~~ia~~Lr~~Gi~v~~d~~~~-~~lgkk~~~A~~~gip~~iiiG~~E~~~ 387 (426)
++|+|.-... ...+.+..|.+.|...|+.+..|+... ......+..+-..---+++++.++-+++
T Consensus 2 ~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S 69 (140)
T smart00255 2 YDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAES 69 (140)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccC
Confidence 5677766542 334556677777777778777765211 1111144444333334456666655444
No 161
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=22.72 E-value=1.3e+02 Score=25.52 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=37.2
Q ss_pred eEEEEeCCC--ChHHHHHHHHHHHHHC-CCeEEEcCCCCC------CHHHHHHHHHHhCCcEEEEEec
Q psy10612 324 QGIVIPVAE--PFNEYADQVKNKIFAA-GFMCDADLDSSD------TLNKKIRNAQISQYNFIMVVGE 382 (426)
Q Consensus 324 ~V~Vi~~~~--~~~~~a~~ia~~Lr~~-Gi~v~~d~~~~~------~lgkk~~~A~~~gip~~iiiG~ 382 (426)
+|.|+...+ ...+...++|+.||+. |+.|.+|. -.. ....-+..+ ...+-++|||=.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~-~~~~~i~~~g~~~W~~~~-~~~ad~Vliv~S 67 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQ-WELNEIARQGPPRWMERQ-IREADKVLIVCS 67 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecH-HhhcccccCCHHHHHHHH-HhcCCEEEEEec
Confidence 467776654 3457788999999999 99999884 122 222223333 556667777765
No 162
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.27 E-value=1e+02 Score=25.03 Aligned_cols=52 Identities=4% Similarity=-0.042 Sum_probs=35.7
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcE
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNF 376 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~ 376 (426)
.++.|+..+........++.+.|++.||.+++.+ ..+.-+.|+--...|=..
T Consensus 54 pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~--T~~Ac~tyN~L~~EgR~V 105 (110)
T PF04430_consen 54 PEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMD--TPAACRTYNILASEGRRV 105 (110)
T ss_dssp -SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE---HHHHHHHHHHHHHTTC-E
T ss_pred CcEEEEccCCccccCCHHHHHHHHHcCCeEEEEC--HHHHHHHHHHHHhCCccE
Confidence 4799999987665566789999999999999986 455666666655555443
No 163
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.15 E-value=2.1e+02 Score=23.24 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=32.1
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHH
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNA 369 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A 369 (426)
.++.|+..+....-...++.+.|++.||.+++-+ ....=+-|+--
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~--T~aAcrTyNiL 97 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMS--TGAACRTYNVL 97 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeC--cHHHHHHHHHH
Confidence 4688998887554455678899999999999886 34444444433
No 164
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=21.85 E-value=5.1e+02 Score=22.27 Aligned_cols=80 Identities=10% Similarity=-0.005 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCe----eeeecHHHHHH
Q psy10612 335 NEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIV----HGEFSVDDVIT 410 (426)
Q Consensus 335 ~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~----q~~v~~~el~~ 410 (426)
.+...+.++... ..+.+..|. +..+.+.+. -.++|..++|++ +|+|......+.. ....+.+++.+
T Consensus 77 ~~~~~~~~~~~~-~~~~~l~D~--~~~~~~~~~---v~~~P~~~lid~----~G~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (171)
T cd02969 77 PENMKAKAKEHG-YPFPYLLDE--TQEVAKAYG---AACTPDFFLFDP----DGKLVYRGRIDDSRPGNDPPVTGRDLRA 146 (171)
T ss_pred HHHHHHHHHHCC-CCceEEECC--chHHHHHcC---CCcCCcEEEECC----CCeEEEeecccCCcccccccccHHHHHH
Confidence 334444444332 235666664 445555443 357899999974 3666655432221 13467788999
Q ss_pred HHHHHHhhcccccc
Q psy10612 411 RFGKLKENRTLKSE 424 (426)
Q Consensus 411 ~i~~~~~~~~~~~~ 424 (426)
.|+.++++.+..-+
T Consensus 147 ~i~~~l~~~~~~~~ 160 (171)
T cd02969 147 ALDALLAGKPVPVP 160 (171)
T ss_pred HHHHHHcCCCCCcc
Confidence 99999988876543
No 165
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=21.79 E-value=3.2e+02 Score=24.34 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCC--CC--------------CCHHHHHHHHHHhCCcEEEEEecCc
Q psy10612 334 FNEYADQVKNKIFAAGFMCDADLD--SS--------------DTLNKKIRNAQISQYNFIMVVGEKE 384 (426)
Q Consensus 334 ~~~~a~~ia~~Lr~~Gi~v~~d~~--~~--------------~~lgkk~~~A~~~gip~~iiiG~~E 384 (426)
....|..+++.|++.|+.|.+--. .+ ..+..|...|+..++.+.|-|=-+.
T Consensus 28 ~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na 94 (189)
T TIGR02883 28 TLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNA 94 (189)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCC
Confidence 457788999999999999974311 11 2578999999999999888775443
No 166
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.59 E-value=4.4e+02 Score=21.27 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=35.7
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEE
Q psy10612 319 WISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMV 379 (426)
Q Consensus 319 ~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~ii 379 (426)
...+-+++|+...........+.++.+++.|.++..--. ...+.+ .|++.|.+.+.+
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~~---~~~~~~~~~~~~ 96 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLLE---MAREHGVPVIII 96 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHHH---HHHHcCCcEEEC
Confidence 345567777665554555677788888888988764431 233333 566678776654
No 167
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.00 E-value=4.2e+02 Score=25.04 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=40.7
Q ss_pred HHHHHCCCeEEEcCCCCC-CHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 343 NKIFAAGFMCDADLDSSD-TLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 343 ~~Lr~~Gi~v~~d~~~~~-~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
..+++.|+.+.+--+++. ..-.|+.-|..+|+|.++|=-+. ...+ ....-+++++.+++.+.+
T Consensus 184 aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~-~~~~----------~~~~~~~~e~~~~l~~~~ 247 (248)
T PRK08057 184 ALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPA-LPYA----------DREFEDVAELVAWLRHLL 247 (248)
T ss_pred HHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC-CCCC----------CcccCCHHHHHHHHHHhh
Confidence 445667888887653332 27789999999999977654443 2211 122347788888887654
No 168
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.30 E-value=2.7e+02 Score=24.37 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=15.8
Q ss_pred EEeCCCChHHHHHHHHHHHHHCCCeEEE
Q psy10612 327 VIPVAEPFNEYADQVKNKIFAAGFMCDA 354 (426)
Q Consensus 327 Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~ 354 (426)
|+.-++...+.+.+.+..|+..|+..++
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv 30 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYEL 30 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEE
Confidence 3433444556666666666666665543
Done!