Query psy10612
Match_columns 426
No_of_seqs 206 out of 1480
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:49:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uh0_A Threonyl-tRNA synthetas 100.0 5.9E-79 2E-83 622.7 33.9 408 11-419 19-459 (460)
2 1qf6_A THRRS, threonyl-tRNA sy 100.0 2E-74 6.7E-79 612.3 36.9 397 25-423 241-639 (642)
3 1evl_A Threonyl-tRNA synthetas 100.0 2.7E-73 9.3E-78 575.0 36.1 397 26-424 1-399 (401)
4 1nyr_A Threonyl-tRNA synthetas 100.0 9.4E-73 3.2E-77 601.8 32.8 395 25-420 240-643 (645)
5 3a32_A Probable threonyl-tRNA 100.0 1.4E-64 4.9E-69 520.3 24.5 393 25-420 6-450 (471)
6 1hc7_A Prolyl-tRNA synthetase; 100.0 2.1E-63 7.1E-68 510.5 26.8 359 22-420 12-389 (477)
7 4hvc_A Bifunctional glutamate/ 100.0 1.2E-62 4E-67 506.0 28.8 363 21-420 28-416 (519)
8 3ial_A Prolyl-tRNA synthetase; 100.0 3.7E-63 1.3E-67 508.3 24.7 352 21-408 21-398 (518)
9 1nj8_A Proline-tRNA synthetase 100.0 3.4E-62 1.2E-66 500.0 28.5 360 21-420 4-383 (459)
10 1nj1_A PROR, proline-tRNA synt 100.0 1.8E-62 6.1E-67 506.4 25.9 375 8-420 21-416 (501)
11 2j3l_A Prolyl-tRNA synthetase; 100.0 9.7E-61 3.3E-65 503.9 30.4 383 25-420 20-568 (572)
12 2i4l_A Proline-tRNA ligase; al 100.0 2.8E-60 9.7E-65 486.8 24.8 369 25-412 40-457 (458)
13 4e51_A Histidine--tRNA ligase; 100.0 1.4E-54 4.8E-59 444.9 30.0 357 42-416 33-458 (467)
14 1h4v_B Histidyl-tRNA synthetas 100.0 1.2E-54 4E-59 441.7 26.7 359 42-416 4-420 (421)
15 1qe0_A Histidyl-tRNA synthetas 100.0 1.2E-54 4E-59 441.6 26.5 353 42-413 3-419 (420)
16 1htt_A Histidyl-tRNA synthetas 100.0 7.8E-55 2.7E-59 443.3 25.0 356 42-416 5-422 (423)
17 1ati_A Glycyl-tRNA synthetase; 100.0 4.9E-54 1.7E-58 443.9 25.9 375 25-417 5-504 (505)
18 1wu7_A Histidyl-tRNA synthetas 100.0 4.6E-54 1.6E-58 438.8 21.0 355 41-417 6-426 (434)
19 2zt5_A Glycyl-tRNA synthetase; 100.0 4.1E-53 1.4E-57 449.4 23.1 388 26-419 68-659 (693)
20 4g84_A Histidine--tRNA ligase, 100.0 6.3E-52 2.2E-56 426.7 28.7 375 26-417 2-461 (464)
21 3net_A Histidyl-tRNA synthetas 100.0 1.2E-52 4E-57 430.9 21.9 360 42-416 13-464 (465)
22 4g85_A Histidine-tRNA ligase, 100.0 2E-52 7E-57 435.2 20.2 361 42-417 68-514 (517)
23 3lc0_A Histidyl-tRNA synthetas 100.0 5E-50 1.7E-54 409.1 19.0 353 42-408 30-446 (456)
24 1g5h_A Mitochondrial DNA polym 100.0 9.2E-50 3.2E-54 405.9 13.1 360 25-422 24-443 (454)
25 3ikl_A DNA polymerase subunit 100.0 5.4E-47 1.8E-51 381.0 22.5 341 27-421 68-452 (459)
26 2dq3_A Seryl-tRNA synthetase; 100.0 1.9E-41 6.6E-46 342.0 15.4 288 8-329 111-423 (425)
27 2dq0_A Seryl-tRNA synthetase; 100.0 8E-41 2.7E-45 339.4 14.0 265 25-324 159-438 (455)
28 1ses_A Seryl-tRNA synthetase; 100.0 7.1E-41 2.4E-45 337.2 12.5 279 8-324 107-412 (421)
29 3vbb_A Seryl-tRNA synthetase, 100.0 7.9E-40 2.7E-44 332.8 15.4 293 8-332 141-472 (522)
30 1wle_A Seryl-tRNA synthetase; 100.0 2E-39 6.8E-44 331.0 15.3 271 25-328 185-473 (501)
31 3lss_A Seryl-tRNA synthetase; 100.0 3.5E-39 1.2E-43 326.2 16.1 294 8-333 147-472 (484)
32 3od1_A ATP phosphoribosyltrans 100.0 2.4E-38 8.1E-43 317.8 21.6 323 42-387 11-396 (400)
33 3qne_A Seryl-tRNA synthetase, 100.0 1.4E-38 4.6E-43 321.6 14.2 275 25-332 151-446 (485)
34 3err_A Fusion protein of micro 100.0 5.5E-38 1.9E-42 323.5 15.1 278 8-323 216-520 (536)
35 2cja_A Seryl-tRNA synthetase; 100.0 1.9E-35 6.6E-40 302.6 13.7 277 19-323 196-511 (522)
36 1z7m_A ATP phosphoribosyltrans 100.0 4.9E-32 1.7E-36 267.1 15.4 155 42-206 23-182 (344)
37 3rac_A Histidine-tRNA ligase; 100.0 1.2E-31 4E-36 266.8 15.0 180 20-207 4-190 (373)
38 3mf2_A BLL0957 protein; aminoa 99.9 1.7E-26 5.7E-31 222.3 12.6 156 44-205 53-234 (346)
39 1usy_A ATP phosphoribosyltrans 99.9 4.1E-23 1.4E-27 197.4 10.0 124 59-207 4-133 (275)
40 3dsq_A Pyrrolysyl-tRNA synthet 99.8 1.3E-18 4.5E-23 166.8 12.0 138 56-203 71-211 (288)
41 1v95_A Nuclear receptor coacti 99.7 6.7E-17 2.3E-21 134.5 9.7 101 320-420 6-109 (130)
42 3qtc_A Pyrrolysyl-tRNA synthet 99.6 1.1E-14 3.9E-19 139.9 14.4 133 58-202 79-213 (290)
43 1nnh_A Asparaginyl-tRNA synthe 99.3 2.1E-11 7.1E-16 117.1 12.9 112 51-174 11-125 (294)
44 1eov_A ASPRS, aspartyl-tRNA sy 99.1 7.4E-10 2.5E-14 113.3 13.5 113 53-184 176-291 (487)
45 1wyd_A Hypothetical aspartyl-t 99.1 6.8E-10 2.3E-14 111.8 12.9 103 53-175 132-235 (429)
46 1x54_A Asparaginyl-tRNA synthe 99.0 1.3E-09 4.5E-14 109.9 12.6 102 52-175 132-236 (434)
47 1n9w_A Aspartyl-tRNA synthetas 99.0 1.4E-09 4.9E-14 109.2 9.3 102 53-174 123-225 (422)
48 3a74_A Lysyl-tRNA synthetase; 98.9 5.4E-09 1.8E-13 106.9 13.3 113 53-184 172-287 (493)
49 1e1o_A Lysyl-tRNA synthetase, 98.9 1.6E-08 5.6E-13 103.5 13.0 113 53-184 181-296 (504)
50 3a5y_A GENX, putative lysyl-tR 98.8 2.2E-08 7.4E-13 97.9 12.5 114 54-185 35-155 (345)
51 3nem_A Aspartyl-tRNA synthetas 98.7 1.3E-07 4.4E-12 95.3 13.0 114 53-185 135-251 (438)
52 2xgt_A Asparaginyl-tRNA synthe 98.6 3.1E-07 1.1E-11 92.7 13.2 113 53-185 130-244 (435)
53 3l4g_A Phenylalanyl-tRNA synth 98.6 5.2E-07 1.8E-11 91.7 13.4 140 55-202 224-406 (508)
54 3bju_A Lysyl-tRNA synthetase; 98.5 5.5E-07 1.9E-11 92.6 13.4 114 53-185 174-290 (521)
55 4ex5_A Lysine--tRNA ligase; st 98.5 9.1E-07 3.1E-11 90.7 13.4 114 53-185 202-318 (529)
56 1c0a_A Aspartyl tRNA synthetas 98.4 1.2E-06 4.2E-11 91.3 12.9 113 53-185 136-252 (585)
57 1l0w_A Aspartyl-tRNA synthetas 98.4 1.4E-06 4.7E-11 90.7 12.9 118 54-194 143-264 (580)
58 3m4p_A Ehasnrs, asparaginyl-tR 98.4 2.1E-06 7.1E-11 86.9 12.1 113 53-184 154-267 (456)
59 1b7y_A Phers, protein (phenyla 98.3 3.3E-06 1.1E-10 82.5 12.0 129 57-198 102-248 (350)
60 3i7f_A Aspartyl-tRNA synthetas 98.3 2E-06 6.9E-11 88.4 10.6 113 54-184 243-357 (548)
61 4ah6_A Aspartate--tRNA ligase, 98.3 4E-06 1.4E-10 87.3 12.4 111 54-184 147-261 (617)
62 2du3_A O-phosphoseryl-tRNA syn 98.3 5.9E-06 2E-10 84.4 13.0 85 110-203 180-266 (534)
63 2rhq_A Phenylalanyl-tRNA synth 98.2 4E-06 1.4E-10 80.2 10.1 128 57-198 54-187 (294)
64 2du7_A O-phosphoseryl-tRNA syn 97.9 6.8E-05 2.3E-09 76.6 12.3 81 109-198 191-272 (549)
65 2odr_B Phosphoseryl-tRNA synth 97.8 0.00015 5.3E-09 74.7 11.9 85 110-203 199-285 (648)
66 2odr_A Phosphoseryl-tRNA synth 97.8 0.00016 5.5E-09 74.6 11.9 85 110-203 199-285 (665)
67 2odr_D Phosphoseryl-tRNA synth 97.7 0.00017 5.7E-09 74.6 11.9 86 110-204 199-286 (685)
68 2odr_C Phosphoseryl-tRNA synth 97.7 0.00018 6.2E-09 74.5 12.2 85 110-203 199-285 (701)
69 3pco_A Phenylalanyl-tRNA synth 97.7 9.2E-05 3.1E-09 71.4 9.0 123 56-195 107-234 (327)
70 3l4g_B Phenylalanyl-tRNA synth 97.6 0.0005 1.7E-08 71.9 12.5 130 58-198 393-525 (589)
71 3ig2_A Phenylalanyl-tRNA synth 97.5 0.0011 3.9E-08 60.0 13.0 143 58-203 6-162 (213)
72 3ica_A Phenylalanyl-tRNA synth 97.5 0.0012 4.1E-08 59.9 12.4 143 58-203 6-162 (213)
73 2rhq_B Phenylalanyl-tRNA synth 97.4 0.001 3.4E-08 71.9 12.1 136 56-201 493-638 (795)
74 1b7y_B Phers, protein (phenyla 96.8 0.0041 1.4E-07 67.0 10.0 129 56-201 489-626 (785)
75 3cmq_A Phenylalanyl-tRNA synth 96.7 0.011 3.6E-07 59.0 12.1 100 58-171 50-163 (415)
76 3pco_B Phenylalanyl-tRNA synth 94.3 0.11 3.6E-06 56.1 8.8 128 61-197 494-630 (795)
77 3gk0_A PNP synthase, pyridoxin 73.9 5.7 0.00019 36.5 6.2 66 301-378 104-181 (278)
78 1m5w_A Pyridoxal phosphate bio 73.6 6.6 0.00023 35.5 6.4 67 301-379 76-154 (243)
79 3o6c_A PNP synthase, pyridoxin 67.5 5.5 0.00019 36.4 4.5 66 301-378 75-150 (260)
80 3rac_A Histidine-tRNA ligase; 49.1 5.5 0.00019 38.7 1.3 12 300-311 355-366 (373)
81 1z7m_A ATP phosphoribosyltrans 40.8 8.9 0.0003 36.8 1.3 12 300-311 326-337 (344)
82 3h16_A TIR protein; bacteria T 37.6 24 0.00082 29.2 3.4 61 321-382 19-83 (154)
83 3pzy_A MOG; ssgcid, seattle st 37.4 43 0.0015 28.1 5.1 66 317-384 2-77 (164)
84 3qay_A Endolysin; amidase A/B 37.4 97 0.0033 26.3 7.4 50 334-383 31-87 (180)
85 1mkz_A Molybdenum cofactor bio 31.0 1.1E+02 0.0038 25.7 6.7 64 321-385 9-81 (172)
86 3jrn_A AT1G72930 protein; TIR 29.7 56 0.0019 28.0 4.5 46 322-368 8-54 (176)
87 2cxh_A Probable BRIX-domain ri 26.9 1.9E+02 0.0065 25.5 7.6 75 322-398 33-108 (217)
88 3rfq_A Pterin-4-alpha-carbinol 26.6 83 0.0028 27.0 5.1 64 321-385 29-101 (185)
89 3lp6_A Phosphoribosylaminoimid 26.6 2E+02 0.0067 24.5 7.2 61 324-384 9-73 (174)
90 3trh_A Phosphoribosylaminoimid 26.2 1.9E+02 0.0064 24.5 7.0 62 323-384 7-72 (169)
91 3noh_A Putative peptide bindin 25.5 73 0.0025 25.4 4.0 35 322-356 61-95 (139)
92 1jwq_A N-acetylmuramoyl-L-alan 25.5 1.6E+02 0.0054 25.0 6.7 47 335-381 31-80 (179)
93 3keb_A Probable thiol peroxida 25.2 1.2E+02 0.0041 26.9 6.0 89 323-418 83-177 (224)
94 3oow_A Phosphoribosylaminoimid 23.8 3.3E+02 0.011 22.9 8.2 61 324-384 7-71 (166)
95 1y5e_A Molybdenum cofactor bio 22.4 1.4E+02 0.0047 24.9 5.7 63 321-384 12-83 (169)
96 2pjk_A 178AA long hypothetical 22.3 1.2E+02 0.0042 25.6 5.3 63 321-384 14-92 (178)
97 2ztg_A Alanyl-tRNA synthetase; 20.8 1E+02 0.0035 32.6 5.3 108 58-198 62-180 (739)
98 4grd_A N5-CAIR mutase, phospho 20.8 3.7E+02 0.013 22.7 7.8 59 323-381 13-75 (173)
99 3ne8_A N-acetylmuramoyl-L-alan 20.7 2.3E+02 0.0078 25.1 7.0 51 334-384 32-85 (234)
100 4gqc_A Thiol peroxidase, perox 20.7 1.2E+02 0.0042 24.8 5.0 86 323-417 68-160 (164)
No 1
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=5.9e-79 Score=622.69 Aligned_cols=408 Identities=44% Similarity=0.869 Sum_probs=375.6
Q ss_pred cCCCCCCCCCCCCC-ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHH-HHcCCeEeecccccchhhH
Q psy10612 11 PECGDSNRMMPISF-VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEY-RKRGFQEVVSPNVYNVKLW 88 (426)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~-~~~G~~~i~tP~l~~~~l~ 88 (426)
.-|..-..+.++++ ..||++||++++||++.+.++|+++|+|.|+.++++|++++++.+ .++||++|.||+|++.++|
T Consensus 19 ~~~~~~~~~~~~~~~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~ 98 (460)
T 3uh0_A 19 SHMASATKNASSATPATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLW 98 (460)
T ss_dssp -----------CCCHHHHHHHHHHHHTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHhCCCceeccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHH
Confidence 34555556666666 569999999999999988899999999999999999999999999 9999999999999999999
Q ss_pred hHhcccccccccceEeeeC---CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeE
Q psy10612 89 QTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ 165 (426)
Q Consensus 89 ~~sg~~~~~~~e~y~~~d~---~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q 165 (426)
.++|||+.|.++||.|+|+ ++.++||||+|+++++++++++.++++||+|+||+|+|||+|.++.++||.|+|||+|
T Consensus 99 ~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q 178 (460)
T 3uh0_A 99 EKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQ 178 (460)
T ss_dssp HHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEE
T ss_pred HhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEE
Confidence 9999999999999999885 6899999999999999999999999999999999999999999985589999999999
Q ss_pred cCeeEecCccchHHHHHHHHHHHHHHH-HHcCCe---------EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCc
Q psy10612 166 DDAHIFCTVEQIGDEIVGALDFLRNVY-SIFGFT---------FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPW 235 (426)
Q Consensus 166 ~d~~~fg~~~~~~~e~~~~~~~~~~il-~~lgi~---------~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~ 235 (426)
.|+|+||.++++++|+..+++++.++| +.|||+ +.+.++++|++++|+.+.|++++..|+++|+..+.++
T Consensus 179 ~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~ 258 (460)
T 3uh0_A 179 DDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPW 258 (460)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred eeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999998899999988889999999 999997 8899999999999999999999999999999999999
Q ss_pred eeCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCC
Q psy10612 236 TENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGK 315 (426)
Q Consensus 236 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~ 315 (426)
..++++++||||++++.+.|++++.|+|+|+++||+++.+|+++|.+.+|....|++++++++||+||++++|+|++++.
T Consensus 259 ~~~~g~gafygpkid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~~g~ 338 (460)
T 3uh0_A 259 KLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGR 338 (460)
T ss_dssp EEETTCSCSSCCEEEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTC
T ss_pred eECCCccccccceEEEEEEccCCCeeeecccccccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHcCCC
Confidence 99999999999999988889999999999999999999999999999988777899888888889999999999988889
Q ss_pred CCCCCCCceEEEEeCCCC---hHHHHHHHHHHHHHC--------------CCeEEEcCCCCCCHHHHHHHHHHhCCcEEE
Q psy10612 316 WPFWISPRQGIVIPVAEP---FNEYADQVKNKIFAA--------------GFMCDADLDSSDTLNKKIRNAQISQYNFIM 378 (426)
Q Consensus 316 ~p~~~ap~~V~Vi~~~~~---~~~~a~~ia~~Lr~~--------------Gi~v~~d~~~~~~lgkk~~~A~~~gip~~i 378 (426)
||+|++|+||+|+|++++ ..++|.+|++.||++ |++|++|+ ++.++|+||++|++.|+||+|
T Consensus 339 ~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~-~~~~lg~k~r~Ad~~g~p~~i 417 (460)
T 3uh0_A 339 WPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDI-RNEPVGYRIKSAILKNYSYLI 417 (460)
T ss_dssp CCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECC-CSSCHHHHHHHHHHHTCSEEE
T ss_pred CCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEEC-CCCCHHHHHHHHHHcCCCEEE
Confidence 999999999999999987 889999999999998 99999999 589999999999999999999
Q ss_pred EEecCccCCCeEEEEEccCCe-eeeecHHHHHHHHHHHHhhc
Q psy10612 379 VVGEKEKSSNTVNVRTRDNIV-HGEFSVDDVITRFGKLKENR 419 (426)
Q Consensus 379 iiG~~E~~~~~v~vk~~~~~~-q~~v~~~el~~~i~~~~~~~ 419 (426)
|||++|+++|+|+||+|++++ |..++++++++.|+++++++
T Consensus 418 vvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~~~ 459 (460)
T 3uh0_A 418 IVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEKNY 459 (460)
T ss_dssp EECHHHHHHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHHTT
T ss_pred EEcchhhhCCeEEEEECCCCceeEEeeHHHHHHHHHHHHHhc
Confidence 999999999999999999999 99999999999999988764
No 2
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=2e-74 Score=612.31 Aligned_cols=397 Identities=44% Similarity=0.824 Sum_probs=374.4
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..+|++||+++++|++++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.|.++||.
T Consensus 241 ~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~- 319 (642)
T 1qf6_A 241 KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT- 319 (642)
T ss_dssp TTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-
T ss_pred cCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-
Confidence 4689999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHH
Q psy10612 105 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVG 183 (426)
Q Consensus 105 ~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~ 183 (426)
.|. +++++||||+|++++++|+++..++++||+|+||+|+|||+|.++.++||.|+|||+|.|+|+||.++++++|+..
T Consensus 320 ~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~ 399 (642)
T 1qf6_A 320 TSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNG 399 (642)
T ss_dssp EEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHH
T ss_pred eecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHH
Confidence 665 8899999999999999999998999999999999999999999944789999999999999999988899999988
Q ss_pred HHHHHHHHHHHcCC-eEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCcee
Q psy10612 184 ALDFLRNVYSIFGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQ 262 (426)
Q Consensus 184 ~~~~~~~il~~lgi-~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 262 (426)
++.++.++|+.||+ +|.+.+++++.+++|+.+.|+.++..+.++++..|.++..+++.++||||++++.+.+++|+.|+
T Consensus 400 ~i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~ 479 (642)
T 1qf6_A 400 CIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQ 479 (642)
T ss_dssp HHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEE
Confidence 89999999999999 69999999987889999999999999999999999999999999999999999888899999999
Q ss_pred eeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHH
Q psy10612 263 CATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVK 342 (426)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia 342 (426)
|+++++||+++.+||++|++.+|....|++++++++||+||++++|+|+++..||.|++|+||+|+|++++..++|.+|+
T Consensus 480 ~gti~~df~l~~r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a~~v~ 559 (642)
T 1qf6_A 480 CGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELT 559 (642)
T ss_dssp EEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHH
T ss_pred eeeEEEeccCCccCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHHHHHH
Confidence 99999999999999999998887656688777788888999999999998889999999999999999988999999999
Q ss_pred HHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcccc
Q psy10612 343 NKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLK 422 (426)
Q Consensus 343 ~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~~~ 422 (426)
+.||++|++|++|+ ++.++|+||++|++.|+||+||||++|+++|+|+||+|++++|..++++++++.|++.++.+..+
T Consensus 560 ~~L~~~Gi~v~~D~-~~~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~~~~ 638 (642)
T 1qf6_A 560 QKLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLK 638 (642)
T ss_dssp HHHHTTTCCEEEEC-CSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHTTCSS
T ss_pred HHHHhCCCEEEEEC-CCCCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhhhhhh
Confidence 99999999999999 58999999999999999999999999999999999999999999999999999999998887655
Q ss_pred c
Q psy10612 423 S 423 (426)
Q Consensus 423 ~ 423 (426)
.
T Consensus 639 ~ 639 (642)
T 1qf6_A 639 Q 639 (642)
T ss_dssp C
T ss_pred h
Confidence 4
No 3
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=2.7e-73 Score=575.03 Aligned_cols=397 Identities=44% Similarity=0.824 Sum_probs=365.4
Q ss_pred hhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee
Q psy10612 26 LWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 105 (426)
Q Consensus 26 ~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~ 105 (426)
.||++||+++|||++++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.++||++.|.++||+ .
T Consensus 1 ~dh~~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~-~ 79 (401)
T 1evl_A 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-T 79 (401)
T ss_dssp CCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-E
T ss_pred CChHHHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-E
Confidence 379999999999999989999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred eC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHH
Q psy10612 106 VE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGA 184 (426)
Q Consensus 106 d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~ 184 (426)
|+ +++++||||+|+++++++++++.++++||+|+||+|+|||+|.++.++||.|+|||+|.|+|+||.++++++|+..+
T Consensus 80 d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~ 159 (401)
T 1evl_A 80 SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGC 159 (401)
T ss_dssp EETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHH
T ss_pred ecCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHH
Confidence 65 88999999999999999999888999999999999999999998226899999999999999999866899998888
Q ss_pred HHHHHHHHHHcCC-eEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecccCCceee
Q psy10612 185 LDFLRNVYSIFGF-TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQC 263 (426)
Q Consensus 185 ~~~~~~il~~lgi-~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 263 (426)
++++.++|++||| ++.+.+++++....|..+.|+.+...+.+.++..+.++..+++..++++|+++..+.++.|.+++|
T Consensus 160 i~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~ 239 (401)
T 1evl_A 160 IRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQC 239 (401)
T ss_dssp HHHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHcCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEe
Confidence 8899999999999 699999988766788888899998889999988888898888888999999888888888999999
Q ss_pred eeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHH
Q psy10612 264 ATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKN 343 (426)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~ 343 (426)
++++++|+++.++|++|.+.+|....|++++.+++||+||++++|+|+++..||.+++|++|+|+|++++..++|.+|++
T Consensus 240 gt~~~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~~ 319 (401)
T 1evl_A 240 GTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQ 319 (401)
T ss_dssp EEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHH
T ss_pred eeeeeccccccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCCcCCCCCCCeEEEEEecCHHHHHHHHHHHH
Confidence 99888888788899999877776445665554677789999999999877789999999999999999889999999999
Q ss_pred HHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhccccc
Q psy10612 344 KIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLKS 423 (426)
Q Consensus 344 ~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~~~~ 423 (426)
.||++|++|++|+ ++.++|+||++|++.|+||+||||++|+++|+|+||+|++++|..++++++++.+++.++.+++++
T Consensus 320 ~Lr~~Gi~v~~d~-~~~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~~~~~~~ 398 (401)
T 1evl_A 320 KLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQ 398 (401)
T ss_dssp HHHHTTCCEEEEC-CSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHCCCEEEEEC-CCCCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHhhhhhhh
Confidence 9999999999998 588999999999999999999999999999999999999999999999999999999999888765
Q ss_pred c
Q psy10612 424 E 424 (426)
Q Consensus 424 ~ 424 (426)
-
T Consensus 399 ~ 399 (401)
T 1evl_A 399 L 399 (401)
T ss_dssp T
T ss_pred h
Confidence 3
No 4
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=9.4e-73 Score=601.82 Aligned_cols=395 Identities=38% Similarity=0.693 Sum_probs=368.0
Q ss_pred ChhHHHHHHhcCCcccccC-CCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceE
Q psy10612 25 VLWNRKIGREQELFFFHEL-SPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS 103 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~-~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~ 103 (426)
..+|++||+++++|++.+. ++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.+.++||.
T Consensus 240 ~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~ 319 (645)
T 1nyr_A 240 ERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFP 319 (645)
T ss_dssp HTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCC
T ss_pred hhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcce
Confidence 4689999999999999875 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeC-C-ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHH
Q psy10612 104 FDVE-N-ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 181 (426)
Q Consensus 104 ~~d~-~-~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~ 181 (426)
|.|. + ++++||||+|++++++|++...++++||+|+||+|+|||+|.++.++||+|+|||+|+|+|+||.++++.+++
T Consensus 320 ~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~ 399 (645)
T 1nyr_A 320 PMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEF 399 (645)
T ss_dssp CEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHH
T ss_pred eEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHH
Confidence 9886 7 8999999999999999999988999999999999999999999768999999999999999999988777777
Q ss_pred HHHHHHHHHHHHHcCC-eEEEEEecCC----CccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeecc
Q psy10612 182 VGALDFLRNVYSIFGF-TFNLRLSTRP----EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 256 (426)
Q Consensus 182 ~~~~~~~~~il~~lgi-~~~i~~~~~~----~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 256 (426)
..++.++.++|+.||+ ++.+.+++++ .+++|..+.|+++...+.+.++..+.++..+++.++|+||++++.+.++
T Consensus 400 ~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~ 479 (645)
T 1nyr_A 400 KRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTA 479 (645)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhh
Confidence 7788889999999999 5999999987 5678888899999999999998888888888888899999998888889
Q ss_pred cCCceeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CChH
Q psy10612 257 LKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVA-EPFN 335 (426)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~-~~~~ 335 (426)
+++.|+|+++++||.++.+||++|++.+|....|++++++++||+||++++|+|++++.||.|++|+||+|+|++ ++..
T Consensus 480 lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~~~~P~~lap~qv~vip~~~~~~~ 559 (645)
T 1nyr_A 480 MGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHY 559 (645)
T ss_dssp TSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHH
T ss_pred hCchhhcceEEeecccccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHhcCCCCCCCCCceEEEEEcccHHHH
Confidence 999999999999999999999999988776667888887888889999999999887899999999999999999 8889
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHH
Q psy10612 336 EYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKL 415 (426)
Q Consensus 336 ~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~ 415 (426)
++|.+|++.||++|++|++|+ ++.++|+|+++|++.|+||+||||++|+++|+|+||+|++++|..++++++++.|++.
T Consensus 560 ~~a~~i~~~Lr~~Gi~v~~D~-~~~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~ 638 (645)
T 1nyr_A 560 DYARQLQDELKSQGVRVSIDD-RNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDE 638 (645)
T ss_dssp HHHHHHHHHHHTTTCCEEECC-SSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEC-CCCCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHH
Confidence 999999999999999999999 5889999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhcc
Q psy10612 416 KENRT 420 (426)
Q Consensus 416 ~~~~~ 420 (426)
++.+.
T Consensus 639 ~~~~~ 643 (645)
T 1nyr_A 639 IRLKK 643 (645)
T ss_dssp HHTTC
T ss_pred Hhhhc
Confidence 87654
No 5
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1.4e-64 Score=520.35 Aligned_cols=393 Identities=31% Similarity=0.516 Sum_probs=329.1
Q ss_pred ChhHHHHHHhcCCccc---c------c----CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh
Q psy10612 25 VLWNRKIGREQELFFF---H------E----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS 91 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~---~------~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s 91 (426)
..+|+++++.++++-. + . .++|+++|+|.|++++++|++++++.|.++||++|.||+|++.++|.++
T Consensus 6 ~~~h~~~~~~~~~~~~~~h~~~~lg~~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s 85 (471)
T 3a32_A 6 DKTHIDYAYELDITVKPDSRVPVFNREFATFTGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVS 85 (471)
T ss_dssp -CCHHHHHHHTTSBCCTTSBCTTTCSBTHHHHCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHT
T ss_pred CCCHHHHHHHcCccccCCchhHHHHHhcCCccCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhc
Confidence 4678888888887611 1 0 3799999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcC---CCCceeeeeccccccCCCCCCCCCccceeEeEcC
Q psy10612 92 GHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWR---ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDD 167 (426)
Q Consensus 92 g~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~---~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d 167 (426)
||++.|.++||+| |+ ++.++||||+|+++++++++++.+++ +||+|+||+|+|||+|.++..+||.|+|||+|+|
T Consensus 86 g~~~~~~~emy~~-d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~ 164 (471)
T 3a32_A 86 GHIEFYRNNMYLF-DIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDD 164 (471)
T ss_dssp CCCTTGGGGSEEE-EETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEE
T ss_pred cCccccccceEEE-ecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECC
Confidence 9999999999999 55 88999999999999999999888887 8999999999999999998338999999999999
Q ss_pred eeEecCccchHHHHHHHHHHHHHHHHH-cCC----e-EEEEEecCC-----CccCCCchhHHHHHHHHHHhhcc----CC
Q psy10612 168 AHIFCTVEQIGDEIVGALDFLRNVYSI-FGF----T-FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNS----FG 232 (426)
Q Consensus 168 ~~~fg~~~~~~~e~~~~~~~~~~il~~-lgi----~-~~i~~~~~~-----~~~~G~~~~~~~~~~~l~~~l~~----~~ 232 (426)
+|+||.++.+.+++..++.++.++|++ ||| + +.+.+++++ ++++|....|+++...+.+.+.. .+
T Consensus 165 ~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~ 244 (471)
T 3a32_A 165 AHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYG 244 (471)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998887667777777888999999 999 4 999999987 56778777888877666555433 35
Q ss_pred CCceeCCCCCccccCccceeeec---ccCCceeeeeeeeeecCCeEEeEEEeC--CCCccccCEEEecccccchHHHHHH
Q psy10612 233 EPWTENPGDGAFYGPKIDITITD---ALKRPHQCATIQLDFQLPIRFNLAYVN--EKGEKNRPVMIHRAILGSVERMVAI 307 (426)
Q Consensus 233 ~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~y~~~v~~~~~~~GgleRll~~ 307 (426)
.+....++...+++|+++..+.+ ++++.++++++++|+.+...||++|.+ .+|.. .+++++.+++||++|++++
T Consensus 245 ~~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i~~~i~GgieRli~~ 323 (471)
T 3a32_A 245 IDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIE-EVYIIHRALLGSIERFLGV 323 (471)
T ss_dssp CEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCS-CEEEEEEEEEEEHHHHHHH
T ss_pred CceEecccchhhCCCccceEEeccHHhhhhhheeeeEEecccccccCCceEeccccCCce-eeEEEeccccCcHHHHHHH
Confidence 66666677778889988776666 555656666555555444434433333 11111 3445666777889999988
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCC------CChHHHHHHHHHHHHHCCCeEEEcC-CCCCCHHHHHHHHH-HhCCcEEEE
Q psy10612 308 LTESYAGKWPFWISPRQGIVIPVA------EPFNEYADQVKNKIFAAGFMCDADL-DSSDTLNKKIRNAQ-ISQYNFIMV 379 (426)
Q Consensus 308 l~e~~g~~~p~~~ap~~V~Vi~~~------~~~~~~a~~ia~~Lr~~Gi~v~~d~-~~~~~lgkk~~~A~-~~gip~~ii 379 (426)
+++++++.||++++|++|+|+|++ ++..++|.+|++.||++|++|++|+ + +.++|+||++|+ +.|+||+|+
T Consensus 324 lie~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~-~~~~g~k~~~a~~~~gip~~ii 402 (471)
T 3a32_A 324 YLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSS-KTGLSSDVRHIESTAKPAVNVF 402 (471)
T ss_dssp HHHHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTTHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCC-CCCHHHHHHHHHHhcCCCEEEE
Confidence 888876799999999999999997 4578899999999999999999998 5 679999999999 999999999
Q ss_pred EecCccCCCeEEEEEccCCe--eeeecHH-----HHHHHHHHHHhhcc
Q psy10612 380 VGEKEKSSNTVNVRTRDNIV--HGEFSVD-----DVITRFGKLKENRT 420 (426)
Q Consensus 380 iG~~E~~~~~v~vk~~~~~~--q~~v~~~-----el~~~i~~~~~~~~ 420 (426)
||++|+++|+|+||+|++++ +..|+++ ++++.|.++++..+
T Consensus 403 iG~~e~~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~~~~~~~~~~ 450 (471)
T 3a32_A 403 IGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVAEELE 450 (471)
T ss_dssp ECHHHHHHTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ECchhhhCCEEEEEECCCCccceEEEeecccchhHHHHHHHHHHHHHH
Confidence 99999999999999999998 6889988 88888888776654
No 6
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=2.1e-63 Score=510.52 Aligned_cols=359 Identities=16% Similarity=0.239 Sum_probs=302.0
Q ss_pred CCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhH-hccccccccc
Q psy10612 22 ISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSEN 100 (426)
Q Consensus 22 ~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~-sg~~~~~~~e 100 (426)
.||..||.+|+++.|++.+. .++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++
T Consensus 12 ~~f~~~~~~l~~~~~li~~~-~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~e 90 (477)
T 1hc7_A 12 QDFSEWYLEVIQKAELADYG-PVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPE 90 (477)
T ss_dssp HHHHHHHHHHHHHTTSEEEC-SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTT
T ss_pred cCchHHHHHHHHHCCCeeec-CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccc
Confidence 36789999999999987664 479999999999999999999999999999999999999999999987 9999999999
Q ss_pred ceEeeeC-----CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc
Q psy10612 101 MFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE 175 (426)
Q Consensus 101 ~y~~~d~-----~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~ 175 (426)
||+|+|+ +++++||||+|++++++|++++.++++||+|+||+|+|||+|.++ + ||+|+|||+|+|+|+||.+.
T Consensus 91 my~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~-r-Gl~R~REF~q~d~~~~~~~~ 168 (477)
T 1hc7_A 91 LAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT-R-PFLRTSEFLWQEGHTAHATR 168 (477)
T ss_dssp CEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC-B-TTTBCSEEEEEEEEEEESSH
T ss_pred eEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCC-C-CcceeEEEEEccEEEEeCCH
Confidence 9999987 478999999999999999999899999999999999999999987 4 99999999999999988776
Q ss_pred -chHHHHHHHHHHHHHHH-HHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceee
Q psy10612 176 -QIGDEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITI 253 (426)
Q Consensus 176 -~~~~e~~~~~~~~~~il-~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~ 253 (426)
++++|++.+++++.++| +.|||++.+.+++++.++.|....| .++..+
T Consensus 169 ~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~------------------------------~ie~~~ 218 (477)
T 1hc7_A 169 EEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTT------------------------------TIEALM 218 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEE------------------------------EEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccce------------------------------EEEEEc
Confidence 89999999999999999 8999998888877654555433221 011112
Q ss_pred ecccCCceeeeeee-eeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCceEEEE
Q psy10612 254 TDALKRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPRQGIVI 328 (426)
Q Consensus 254 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V~Vi 328 (426)
.| ++.+++++++ ++++++..+|++|.+.+|... ++...+.++ | +|++++|++++ |+.||++++|+||+|+
T Consensus 219 ~d--gr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~-~~~~~~~Gi-g-eRli~~lie~~~d~~gl~~P~~laP~qV~Ii 293 (477)
T 1hc7_A 219 KD--GKALQAGTSHYLGENFARAFDIKFQDRDLQVK-YVHTTSWGL-S-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIV 293 (477)
T ss_dssp TT--SCEEEEEEEEEEETHHHHHTTCEEECTTSCEE-ECEEEEEEE-E-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEE
T ss_pred CC--CcEEEEeeeEEcccccccccCeEEECCCCCEE-eeeEeeccH-H-HHHHHHHHHHhCccccccCCcccCCceEEEE
Confidence 22 4556777664 666666778899988766532 223333444 3 99999999875 5789999999999999
Q ss_pred eCCC-----ChHHHHHHHHHHHHHCCCeEEEcCCC-CCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeee
Q psy10612 329 PVAE-----PFNEYADQVKNKIFAAGFMCDADLDS-SDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE 402 (426)
Q Consensus 329 ~~~~-----~~~~~a~~ia~~Lr~~Gi~v~~d~~~-~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~ 402 (426)
|+++ +..++|.+|++.||++|++|++|+ + +.++|+||++|++.|+||+|+||++|+++|+|+||+|+ ++|..
T Consensus 294 pi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~-~~~~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~ 371 (477)
T 1hc7_A 294 PIYKDESRERVLEAAQGLRQALLAQGLRVHLDD-RDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKET 371 (477)
T ss_dssp ECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECC-CSSSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCE
T ss_pred EcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeC-CCCCCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEE
Confidence 9975 578999999999999999999998 6 78999999999999999999999999999999999999 99999
Q ss_pred ecHHHHHHHHHHHHhhcc
Q psy10612 403 FSVDDVITRFGKLKENRT 420 (426)
Q Consensus 403 v~~~el~~~i~~~~~~~~ 420 (426)
++++++++.|+++++..+
T Consensus 372 v~~~el~~~l~~~l~~~~ 389 (477)
T 1hc7_A 372 LPLAALPEALPGKLDAFH 389 (477)
T ss_dssp EEGGGHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHHH
Confidence 999999999988776544
No 7
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-62 Score=505.95 Aligned_cols=363 Identities=18% Similarity=0.250 Sum_probs=313.9
Q ss_pred CCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhH-hcccccccc
Q psy10612 21 PISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSE 99 (426)
Q Consensus 21 ~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~-sg~~~~~~~ 99 (426)
.-||..||.+|+++.||++. ..++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.+
T Consensus 28 ~~~f~~wy~~l~~~~~lid~-~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~ 106 (519)
T 4hvc_A 28 EENLADWYSQVITKSEMIEY-HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAP 106 (519)
T ss_dssp TTCHHHHHHHHHHHTTCEEE-CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGG
T ss_pred ccCchHHHHHHHHHCCCeEe-cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccc
Confidence 34778999999999998776 3579999999999999999999999999999999999999999999996 899999999
Q ss_pred cceEeeeCC-----ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecC-
Q psy10612 100 NMFSFDVEN-----ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCT- 173 (426)
Q Consensus 100 e~y~~~d~~-----~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~- 173 (426)
+||+++|++ +.++||||+|++++++|++++.|+++||+|++|+|+|||+|.++ .+||.|+|||+|.|+|+|+.
T Consensus 107 emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~-~~Gl~R~ReF~q~e~h~~~~~ 185 (519)
T 4hvc_A 107 EVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKH-PQPFLRTREFLWQEGHSAFAT 185 (519)
T ss_dssp GCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEEEEEEESS
T ss_pred cceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCC-CCCCcceeEEEEeeEEEEecC
Confidence 999998763 36999999999999999999999999999999999999999776 48999999999999998554
Q ss_pred ccchHHHHHHHHHHHHHHHHHc-CCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCcccee
Q psy10612 174 VEQIGDEIVGALDFLRNVYSIF-GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDIT 252 (426)
Q Consensus 174 ~~~~~~e~~~~~~~~~~il~~l-gi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~ 252 (426)
++++++|+..+++++.++++.| ||+|.+...+++.+++|.+..|+ ++ .
T Consensus 186 ~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~------------------------------iE-a 234 (519)
T 4hvc_A 186 MEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTT------------------------------IE-A 234 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEE------------------------------EE-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhhee------------------------------ee-e
Confidence 5599999999999999999997 99987777666656666543211 11 1
Q ss_pred eecccCCceeeeee-eeeecCCeEEeEEEeCCC--CccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCceE
Q psy10612 253 ITDALKRPHQCATI-QLDFQLPIRFNLAYVNEK--GEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPRQG 325 (426)
Q Consensus 253 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~--~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V 325 (426)
+.++.++.++++++ +++++++.+|+++|.+.+ |.. .++++++.++| +|++++|+|++ |+.||++++|+||
T Consensus 235 ~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~-~~vh~~~~Gi~--~R~l~aliE~~~d~~gl~~P~~laP~qV 311 (519)
T 4hvc_A 235 FISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEK-QFAYQNSWGLT--TRTIGVMTMVHGDNMGLVLPPRVACVQV 311 (519)
T ss_dssp EETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCE-EECEEEEEEEE--THHHHHHHHHHCBTTBCCCCTTTCSCSE
T ss_pred eeccCCCEEeecccccccchhhhhcCcEEeccccCCCE-EEEEEccccHH--HHHHHHHHHHhCccccccccccCCCeEE
Confidence 23456788888887 688888889999999863 432 24444444342 99999999974 6889999999999
Q ss_pred EEEeCCC----------ChHHHHHHHHHHHHHCCCeEEEcCCCCC-CHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEE
Q psy10612 326 IVIPVAE----------PFNEYADQVKNKIFAAGFMCDADLDSSD-TLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRT 394 (426)
Q Consensus 326 ~Vi~~~~----------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~-~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~ 394 (426)
+|+|++. ...++|.+|++.|+++|++|++|+ ++. ++|+||++|+++|+||+|+||++|+++|+|+||+
T Consensus 312 ~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Dd-r~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~ 390 (519)
T 4hvc_A 312 VIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADL-RDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR 390 (519)
T ss_dssp EEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECC-CSSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEE
T ss_pred EEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEE
Confidence 9999972 467899999999999999999999 464 8999999999999999999999999999999999
Q ss_pred ccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 395 RDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 395 ~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
|++++|..|+++++++.|.++++..+
T Consensus 391 R~tgeq~~v~~~el~~~l~~ll~~i~ 416 (519)
T 4hvc_A 391 RDTGEKLTVAENEAETKLQAILEDIQ 416 (519)
T ss_dssp TTTCCEEEEEGGGHHHHHHHHHHHHH
T ss_pred CCCCCccceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877554
No 8
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.7e-63 Score=508.33 Aligned_cols=352 Identities=20% Similarity=0.312 Sum_probs=307.7
Q ss_pred CCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHh-Hhcccccccc
Q psy10612 21 PISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQ-TSGHWAHYSE 99 (426)
Q Consensus 21 ~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~-~sg~~~~~~~ 99 (426)
..||..|+.+|+.+.|++..++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|. .+||++.|.+
T Consensus 21 ~~~f~~wy~~l~~~aglid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~ 100 (518)
T 3ial_A 21 RDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEA 100 (518)
T ss_dssp TTTHHHHHHHHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGG
T ss_pred cccccHHHHHHHHHCCCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccc
Confidence 456789999999999998765678999999999999999999999999999999999999999999997 5899999999
Q ss_pred cceEeeeC-----CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCc
Q psy10612 100 NMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTV 174 (426)
Q Consensus 100 e~y~~~d~-----~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~ 174 (426)
+||+++|+ +++++||||+|+++++++++++.|+++||+|+||+|+|||+|.++ ++||.|+|||+|.|+|+||.+
T Consensus 101 emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~-~~GL~R~REF~q~e~h~f~~~ 179 (518)
T 3ial_A 101 ECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKN-TKPLIRVREIHWNEAHCCHAT 179 (518)
T ss_dssp GCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCS-CBTTTBCSEEEEEEEEEEESS
T ss_pred cEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCC-CCCCceeeEEEEeeEEEEECC
Confidence 99999986 478999999999999999999999999999999999999999776 589999999999999999765
Q ss_pred c-chHHHHHHHHHHHHHHH-HHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCcccee
Q psy10612 175 E-QIGDEIVGALDFLRNVY-SIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDIT 252 (426)
Q Consensus 175 ~-~~~~e~~~~~~~~~~il-~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~ 252 (426)
. ++++|+..+++++.++| +.|||+|.+.... . |++ ..++++++++|+.
T Consensus 180 ~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~--~--------~e~--------------------~~gA~yt~~iE~~ 229 (518)
T 3ial_A 180 AEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRV--C--------WDR--------------------FPGADYSEVSDVV 229 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEEC--G--------GGC--------------------CTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecC--h--------hhc--------------------cCCCccceEEEEE
Confidence 5 99999999999999999 9999997654311 1 110 1124566666655
Q ss_pred eecccCCceeeeeee-eeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCceEEE
Q psy10612 253 ITDALKRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPRQGIV 327 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V~V 327 (426)
+.+ ++.+++++++ ++++++.+||++|.+.+|.... +++ ++.|..+|++++|+|++ |+.||+++||+||+|
T Consensus 230 ~pd--gr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~-~h~--~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~I 304 (518)
T 3ial_A 230 MPC--GRVLQTAGIHNLGQRFSSTFDILYANKANESVH-PYL--TCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVI 304 (518)
T ss_dssp CTT--SCEEEEEEEEEEETHHHHHTTCCEECTTCCEEC-CEE--EEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEE
T ss_pred cCC--CCEEEEeceecccchhhhhcCcEEECCCCCEee-eEE--eccchHHHHHHHHHHHhCCCCccccCCccceEEEEE
Confidence 544 7888888886 7888889999999998876433 333 34453499999999986 579999999999999
Q ss_pred EeCCC----------ChHHHHHHHHHHHHHC-CCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEcc
Q psy10612 328 IPVAE----------PFNEYADQVKNKIFAA-GFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRD 396 (426)
Q Consensus 328 i~~~~----------~~~~~a~~ia~~Lr~~-Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~ 396 (426)
+|++. ...++|.+|++.|+++ |++|.+|++.+.++|+||++|+..|+|++|+||++|+++|+|+|++|+
T Consensus 305 iPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd 384 (518)
T 3ial_A 305 IPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRD 384 (518)
T ss_dssp EEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETT
T ss_pred EEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECC
Confidence 99973 3678999999999999 999999983278999999999999999999999999999999999999
Q ss_pred CCe--eeeecHHHH
Q psy10612 397 NIV--HGEFSVDDV 408 (426)
Q Consensus 397 ~~~--q~~v~~~el 408 (426)
+++ +..|+++++
T Consensus 385 ~~~~~k~~v~~~el 398 (518)
T 3ial_A 385 VGKDQKRVIPITEV 398 (518)
T ss_dssp TCGGGCEEEEHHHH
T ss_pred CCccceeEeeHHHH
Confidence 999 999999999
No 9
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=3.4e-62 Score=500.00 Aligned_cols=360 Identities=18% Similarity=0.273 Sum_probs=309.3
Q ss_pred CCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhH-hcccccccc
Q psy10612 21 PISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSE 99 (426)
Q Consensus 21 ~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~-sg~~~~~~~ 99 (426)
..||..||.+|+.+.||+..+..++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.+
T Consensus 4 ~~~~~~~~~~l~~~~~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~ 83 (459)
T 1nj8_A 4 MLEFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFED 83 (459)
T ss_dssp CCCHHHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGG
T ss_pred ccCccHhHHHHHHhCCCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccch
Confidence 4578999999999999987756789999999999999999999999999999999999999999999985 899999999
Q ss_pred cceEeeeC-----CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEe-EcCeeEec
Q psy10612 100 NMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQ-QDDAHIFC 172 (426)
Q Consensus 100 e~y~~~d~-----~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~-q~d~~~fg 172 (426)
+||+|+|+ +++++||||+|++++++|++++.++++||+|+||+|+|||+|++ + +||.|+|||+ |.|+|+|+
T Consensus 84 emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~--rGl~R~REF~qq~d~~~~~ 161 (459)
T 1nj8_A 84 EVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHT--RPLIRLREIMTFKEAHTAH 161 (459)
T ss_dssp GCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCC--BTTTBCSBCSCEEEEEEEE
T ss_pred hhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCC--CCceEeeeeeccCcEEEEE
Confidence 99999987 57899999999999999999989999999999999999999999 5 4899999999 99999988
Q ss_pred Ccc-chHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccce
Q psy10612 173 TVE-QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDI 251 (426)
Q Consensus 173 ~~~-~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~ 251 (426)
.+. ++++|+..++.++.++|+.|||++.+.++++..++.|....| .++.
T Consensus 162 ~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~~~------------------------------~ie~ 211 (459)
T 1nj8_A 162 STKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTM------------------------------AFDT 211 (459)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEE------------------------------EEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCceEEeecCchhhcCCcccce------------------------------eEEE
Confidence 876 899998888899999999999998887766433333322111 1121
Q ss_pred eeecccCCceeeeeee-eeecCCeEEeEEEeCCCCccccCEEEecccccch-HHHHHHHHHhc----CCCCCCCCCCceE
Q psy10612 252 TITDALKRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSV-ERMVAILTESY----AGKWPFWISPRQG 325 (426)
Q Consensus 252 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~Ggl-eRll~~l~e~~----g~~~p~~~ap~~V 325 (426)
.+.+ ++.+++++++ ++.+++..+|++|.+.+|... ++. ..++| + ||++++|++++ |+.||++++|+||
T Consensus 212 ~~~d--g~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~-~v~--~~~~G-igeRli~alie~~~d~~gl~~P~~laP~qv 285 (459)
T 1nj8_A 212 IFPD--GRTMQIATVHNLGQNFSKTFEIIFETPTGDKD-YAY--QTCYG-ISDRVIASIIAIHGDEKGLILPPIVAPIQV 285 (459)
T ss_dssp ECTT--SCEEEEEEEEEEETHHHHHTTCEEECTTSSEE-ECE--EEEEE-ECTHHHHHHHHHHCBTTBCCCCTTSCSSSE
T ss_pred EcCC--CcEEEEEEEeecccccccccCeEEECCCCCEe-eee--Eeecc-HHHHHHHHHHHHhCCCceeEcCCcCCCCcE
Confidence 1222 5567777764 666666778899988766532 222 34454 3 99999999875 4789999999999
Q ss_pred EEEeC-C-C---ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCee
Q psy10612 326 IVIPV-A-E---PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVH 400 (426)
Q Consensus 326 ~Vi~~-~-~---~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q 400 (426)
+|+|+ + + +..++|.+|++.||++ ++|++|+ ++.++|+||++|++.|+||+|+||++|+++|+|+||+|++++|
T Consensus 286 ~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~-~~~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq 363 (459)
T 1nj8_A 286 VIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDD-RDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEK 363 (459)
T ss_dssp EEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECC-SCSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCE
T ss_pred EEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEEC-CCCCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCCce
Confidence 99999 5 4 5789999999999999 9999999 5899999999999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHhhcc
Q psy10612 401 GEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 401 ~~v~~~el~~~i~~~~~~~~ 420 (426)
..++++++++.|++.++..+
T Consensus 364 ~~v~~~el~~~l~~~l~~~~ 383 (459)
T 1nj8_A 364 FQVDETQLMEVVEKTLNNIM 383 (459)
T ss_dssp EEEETTSHHHHHHHHHHHHH
T ss_pred EEEeHHHHHHHHHHHHHHHH
Confidence 99999999999988776544
No 10
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=1.8e-62 Score=506.41 Aligned_cols=375 Identities=17% Similarity=0.242 Sum_probs=306.9
Q ss_pred ccccCCCCCCCC---CCCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccc
Q psy10612 8 LVLPECGDSNRM---MPISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYN 84 (426)
Q Consensus 8 ~~~~~~~~~~~~---~~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~ 84 (426)
+-+|+++|+++. .+.+|..||.+|++++|+++..+.++|+++|+|.|++++++|++++++.+.+ ||++|.||+|++
T Consensus 21 ~~vp~g~~~~~~~~~~~~~f~~~~~~l~~~~glid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~ 99 (501)
T 1nj1_A 21 MQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVP 99 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEE
T ss_pred CcCCCCCCCCccccCCCCCccHhHHHHHHHCCCccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEec
Confidence 567888887632 1236679999999999998875668999999999999999999999999999 999999999999
Q ss_pred hhhHhH-hcccccccccceEeeeC-----CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCc
Q psy10612 85 VKLWQT-SGHWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLT 158 (426)
Q Consensus 85 ~~l~~~-sg~~~~~~~e~y~~~d~-----~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~ 158 (426)
.++|.+ +||++.|.++||+|+|+ +++++||||+|+++++++++++.++++||+|+||+|+|||+|.+. .+||.
T Consensus 100 ~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~-~rGl~ 178 (501)
T 1nj1_A 100 EDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKH-TRPLI 178 (501)
T ss_dssp HHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSC-CBTTT
T ss_pred HHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCC-CCCCc
Confidence 999987 89999999999999986 578999999999999999999899999999999999999999993 24999
Q ss_pred cceeEe-EcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCce
Q psy10612 159 RVRRFQ-QDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWT 236 (426)
Q Consensus 159 R~REF~-q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~ 236 (426)
|+|||+ |.|+|+++.+. ++++|+..+++++.++|+.|||+|++.++++...+.|....|
T Consensus 179 R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~a~~~~------------------- 239 (501)
T 1nj1_A 179 RVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTV------------------- 239 (501)
T ss_dssp BCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTCSEEE-------------------
T ss_pred eeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchhhcCCcccce-------------------
Confidence 999999 99999877665 899999989999999999999998888765433333322110
Q ss_pred eCCCCCccccCccceeeecccCCceeeeeee-eeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc---
Q psy10612 237 ENPGDGAFYGPKIDITITDALKRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY--- 312 (426)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~--- 312 (426)
.++..+.+ ++.++++++. ++..++.+++++|.+..|... ++.+.+.++ | +|++++|+|++
T Consensus 240 -----------die~~l~~--g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~-~~h~~g~Gi-g-eRli~aliE~~~d~ 303 (501)
T 1nj1_A 240 -----------AFDTLMPD--GKTLQIGTVHNLGQTFARTFEIKFETPEGDHE-YVHQTCYGL-S-DRVIASVIAIHGDE 303 (501)
T ss_dssp -----------EEEEECTT--SCEEEEEEEEEEETHHHHHHTCEEECTTSCEE-ECEEEEEEE-C-THHHHHHHHHTCCS
T ss_pred -----------EEEEEcCC--CCEEEEEEEEeccccchhhcCeEEECCCCCEE-eeeeccccH-H-HHHHHHHHHHcCcc
Confidence 12222223 5566766653 565567778899987665432 223333444 3 99999999986
Q ss_pred -CCCCCCCCCCceEEEEeC-C-C---ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccC
Q psy10612 313 -AGKWPFWISPRQGIVIPV-A-E---PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKS 386 (426)
Q Consensus 313 -g~~~p~~~ap~~V~Vi~~-~-~---~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~ 386 (426)
|+.||++++|++|+|+|+ + + +..++|.+|++.||++|++|++|+ ++.++|+||++|++.|+||+|+||++|++
T Consensus 304 ~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~-~~~s~g~k~~~a~~~G~p~~iiiG~~e~~ 382 (501)
T 1nj1_A 304 SGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDD-RDIRAGRKYYEWEMRGVPLRVEIGPRDLE 382 (501)
T ss_dssp SSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECC-CSSCHHHHHHHHHHEECSEEEEECHHHHT
T ss_pred cCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEEC-CCCCHHHHHHHHHhcCCCEEEEECcchhh
Confidence 368999999999999999 5 4 578999999999999999999999 58999999999999999999999999999
Q ss_pred CCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcc
Q psy10612 387 SNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 387 ~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
+|+|+||+|++++|..++++++++.|+++++..+
T Consensus 383 ~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~ 416 (501)
T 1nj1_A 383 KGAAVISRRDTGEKVTADLQGIEETLRELMKDIL 416 (501)
T ss_dssp TTEEEEEESSSCCEEEEETTTHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776544
No 11
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=9.7e-61 Score=503.94 Aligned_cols=383 Identities=19% Similarity=0.296 Sum_probs=303.2
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..+|+.|++. |+ +.+.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.++|||+.|.++||+|
T Consensus 20 ~~~h~~l~~~-g~--~~~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~ 96 (572)
T 2j3l_A 20 VLSHQILLRA-GY--IRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRL 96 (572)
T ss_dssp SHHHHHHHHT-TS--EEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEE
T ss_pred CcCHHHHHhC-CC--ccccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEE
Confidence 6799999997 65 44567999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHH
Q psy10612 105 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIV 182 (426)
Q Consensus 105 ~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~ 182 (426)
+|+ +++++||||+|+++++++++++.++++||+|+||+|+|||+|+++ ++||+|+|||+|.|+|+||.+. ++++|++
T Consensus 97 ~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~ 175 (572)
T 2j3l_A 97 KDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRS-RSGLLRGREFIMKDGYSFHADEASLDQSYR 175 (572)
T ss_dssp ECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC-CTGGGSCSEEEEEEEEEEESSHHHHHHHHH
T ss_pred ecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCc-ccCccccceeEEeeeEEEcCCHHHHHHHHH
Confidence 997 799999999999999999999889999999999999999999998 7999999999999999999976 8999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCccCCCc------------------------------------------------
Q psy10612 183 GALDFLRNVYSIFGFTFNLRLSTRPEKYLGEL------------------------------------------------ 214 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~------------------------------------------------ 214 (426)
.+++++.++|+.|||+|.+.++++ +.+|..
T Consensus 176 ~~~~~~~~~~~~lgl~~~~~~~~~--g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (572)
T 2j3l_A 176 DYEKAYSRIFERCGLEFRAIIGDG--GAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLE 253 (572)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCG--GGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCE
T ss_pred HHHHHHHHHHHHcCCcEEEEeccc--ccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccc
Confidence 998999999999999998888653 111110
Q ss_pred -----h--hHHHH-----------------------------------HHHHHHhhccCCCCceeC---------CCCCc
Q psy10612 215 -----E--VWNKA-----------------------------------EKQLEASLNSFGEPWTEN---------PGDGA 243 (426)
Q Consensus 215 -----~--~~~~~-----------------------------------~~~l~~~l~~~~~~~~~~---------~~~~~ 243 (426)
+ +.+.. ..++.+++... ..... ....+
T Consensus 254 ~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~--~l~~a~~~el~~~~g~~~g 331 (572)
T 2j3l_A 254 KIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGAD--FLDEATEEDARRVLGAGFG 331 (572)
T ss_dssp EEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCS--CEEECCHHHHHHHHSSCTT
T ss_pred eecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCC--ccccCCHHHHHHhhCCCcc
Confidence 0 00000 01111112110 00000 00111
Q ss_pred cccC-----ccceeeecc----------------------cCCcee------------------e-eeee--------ee
Q psy10612 244 FYGP-----KIDITITDA----------------------LKRPHQ------------------C-ATIQ--------LD 269 (426)
Q Consensus 244 ~~~p-----~~~~~~~~~----------------------~~~~~~------------------~-~~~~--------l~ 269 (426)
+++| ++.+.+... +|++++ | ++++ +.
T Consensus 332 ~~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~ 411 (572)
T 2j3l_A 332 SIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHI 411 (572)
T ss_dssp SCCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEE
T ss_pred ccCCccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEE
Confidence 2223 111111111 122222 1 1111 22
Q ss_pred ecCC----eEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----CCCCCCCCCCceEEEEeCC---CChHHHH
Q psy10612 270 FQLP----IRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----AGKWPFWISPRQGIVIPVA---EPFNEYA 338 (426)
Q Consensus 270 ~~~~----~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V~Vi~~~---~~~~~~a 338 (426)
|+++ .+|+++|.+.+|....| .|+|.++| +||++++|+|++ |+.||.+++|++|+|+|++ ++..++|
T Consensus 412 f~Lg~~ys~~~~~~~~~~~g~~~~p-~~g~~giG-veRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a 489 (572)
T 2j3l_A 412 FKLGTRYSDAMGATVLDENGREKSV-IMGCYGIG-VSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLS 489 (572)
T ss_dssp EEEETHHHHHHTCEEECTTSCEEEC-EEEEEEEE-HHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHHHH
T ss_pred eccCcccccccCCEEECCCCcEEee-eeeccccC-HHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHHHH
Confidence 5555 46788888777653334 45677776 999999999875 5789999999999999998 5678999
Q ss_pred HHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhh
Q psy10612 339 DQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKEN 418 (426)
Q Consensus 339 ~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~ 418 (426)
.+|++.||++|++|++|+ ++.++|+||++|++.|+||+||||++| ++|+|+||+|++++|..++++++++.++ .++.
T Consensus 490 ~~l~~~Lr~~gi~v~~d~-~~~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~~ 566 (572)
T 2j3l_A 490 QEVEAMMTEAGYEVLVDD-RNERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILMN 566 (572)
T ss_dssp HHHHHHHHHTTCCEEEEC-SSCCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHCC
T ss_pred HHHHHHHHhCCCeEEEeC-CCCCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHhc
Confidence 999999999999999999 588999999999999999999999999 9999999999999999999999999999 7765
Q ss_pred cc
Q psy10612 419 RT 420 (426)
Q Consensus 419 ~~ 420 (426)
.+
T Consensus 567 ~~ 568 (572)
T 2j3l_A 567 TT 568 (572)
T ss_dssp --
T ss_pred cc
Confidence 54
No 12
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=2.8e-60 Score=486.77 Aligned_cols=369 Identities=17% Similarity=0.231 Sum_probs=291.1
Q ss_pred ChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEe
Q psy10612 25 VLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF 104 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~ 104 (426)
..+|+.|++. |+ +.+.++|+++|+|.|++++++|++++++.|.++||++|.||+|++.++|.++|+|+.+.++||+|
T Consensus 40 ~~~h~ll~r~-g~--i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~ 116 (458)
T 2i4l_A 40 IVSHRLMLRA-GM--LRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRI 116 (458)
T ss_dssp SHHHHHHHHT-TC--EEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEE
T ss_pred cchHHHHhhc-CC--eeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEE
Confidence 5789999988 54 55678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHH
Q psy10612 105 DVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIV 182 (426)
Q Consensus 105 ~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~ 182 (426)
+|+ +++++||||+|+.++.+++....++++||+|+||+|+|||+|.++ ++||.|+|||+|+|+|+||.++ ++++|++
T Consensus 117 ~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p-~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~ 195 (458)
T 2i4l_A 117 ADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRP-RFGVMRGREFLMKDAYSFDVDEAGARKSYN 195 (458)
T ss_dssp ECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSC-BTGGGBCSEEEEEEEEEEESSHHHHHHHHH
T ss_pred EeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCC-CCCcccccceEEeEEEEEECCHHHHHHHHH
Confidence 998 899999999999988888888888899999999999999999666 6899999999999999999776 8999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHH------HHHHHHHHhhc-cCCCCceeC-----------------
Q psy10612 183 GALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWN------KAEKQLEASLN-SFGEPWTEN----------------- 238 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~------~~~~~l~~~l~-~~~~~~~~~----------------- 238 (426)
.+++++.++|++||+++.+.++++ +.+|...+.+ ..++.+. .+. ....+....
T Consensus 196 ~~~~~~~~i~~~lGl~~~~~~~~~--g~~gg~~s~e~~~l~~~ged~i~-~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~ 272 (458)
T 2i4l_A 196 KMFVAYLRTFARMGLKAIPMRAET--GPIGGDLSHEFIVLAETGESGVY-IDRDVLNLPVPDENVDYDGDLTPIIKQWTS 272 (458)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCC--CSSCSSCEEEEEEECTTCSEEEE-EEGGGGGCCCCCTTCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEccc--cccCCccchhhhhhhhcCcceEE-ecccccccCHHHHhccccHhHHHHHhcCch
Confidence 998899999999999998888776 3333221100 0000000 000 000000000
Q ss_pred ---------CCCC---ccccCccceeeecccCCceeeeeeeeeecCC----eEEeEEEeCCCCccccCEEEecccccchH
Q psy10612 239 ---------PGDG---AFYGPKIDITITDALKRPHQCATIQLDFQLP----IRFNLAYVNEKGEKNRPVMIHRAILGSVE 302 (426)
Q Consensus 239 ---------~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~y~~~v~~~~~~~Ggle 302 (426)
.++. ..+++++. +. +... .+..|+++ ..+|.+|.+..|.. .|++++|+++| +|
T Consensus 273 ~~~~~~~~~~g~~~~~~~~~~~l~--~~----rgl~---~G~iFelg~~~s~~~g~ry~~~~G~~-~p~~~~gfgiG-ve 341 (458)
T 2i4l_A 273 VYAATEDVHEPARYESEVPEANRL--NT----RGIE---VGQIFYFGTKYSDSMKANVTGPDGTD-APIHGGSYGVG-VS 341 (458)
T ss_dssp SCEEETTTCCTTHHHHHSCTTTEE--EE----EEEE---EEEEEEEETHHHHHTTCEEECTTSCE-EECEEEEEEEE-HH
T ss_pred hhhcChhhcccccccCCCCCcCce--ee----eeec---cCcEEEecccccccCCcEEECCCCCE-eceEEeeeccc-HH
Confidence 0000 01111111 00 0011 11223332 33566777665553 45556778887 99
Q ss_pred HHHHHHHHhc----CCCCCCCCCCceEEEEeCC---CChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCc
Q psy10612 303 RMVAILTESY----AGKWPFWISPRQGIVIPVA---EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYN 375 (426)
Q Consensus 303 Rll~~l~e~~----g~~~p~~~ap~~V~Vi~~~---~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip 375 (426)
|++++|+|++ |+.||.+++|++|+|+|++ ++..++|.+|++.||++|++|++|+ ++.++|+||++|+++|+|
T Consensus 342 Rli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~-~~~~~g~k~~~ad~~g~p 420 (458)
T 2i4l_A 342 RLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDD-TDQRAGAKFATADLIGIP 420 (458)
T ss_dssp HHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEEC-SSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEEC-CCCCHHHHHHHHHhcCCC
Confidence 9999999986 7899999999999999996 4678899999999999999999999 588999999999999999
Q ss_pred EEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHH
Q psy10612 376 FIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRF 412 (426)
Q Consensus 376 ~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i 412 (426)
|+||||++|+++|+|+||+|++++|..++++++++.|
T Consensus 421 ~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 421 WQIHVGPRGLAEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp EEEEECHHHHTTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred EEEEECCchhhCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 9999999999999999999999999999999987654
No 13
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1.4e-54 Score=444.85 Aligned_cols=357 Identities=19% Similarity=0.203 Sum_probs=263.2
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-cc-cccccccceEeeeC--CceEEEcCCC
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE--NETYALKPMN 117 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g~-~~~~~~e~y~~~d~--~~~~~LrP~~ 117 (426)
+.++|++||+|.++.++++|+++++++|+++||++|.||+|++.++|.++ |+ |+.+.++||+|.|+ |+.++||||+
T Consensus 33 ~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~ 112 (467)
T 4e51_A 33 TGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPEN 112 (467)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCS
T ss_pred CCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCccc
Confidence 46899999999999999999999999999999999999999999999988 87 78889999999987 7899999999
Q ss_pred cHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcC
Q psy10612 118 CPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFG 196 (426)
Q Consensus 118 t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lg 196 (426)
|++++|+++++..++ ++|+|+||+|+|||+|+++. +|+|||+|+|+|+||.++ .+|+|++.+ +.++|+.||
T Consensus 113 t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~----gR~ReF~Q~d~ei~g~~~~~adaEvi~l---~~~~l~~lG 184 (467)
T 4e51_A 113 TAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQR----GRYRQFHQVGVEALGFAGPDADAEIVMM---CQRLWEDLG 184 (467)
T ss_dssp HHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHHHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHccccc-CCCEEEEEEccEEccCCCCC----CCcCceEEEEEEEEeCCChHHHHHHHHH---HHHHHHHcC
Confidence 999999999877777 68999999999999999987 899999999999999988 788888755 599999999
Q ss_pred Ce-EEEEEecCCCccCCCchhHHHHHHHHHHhhccCC-------------CCceeCC----CCCccc--cCccceeeecc
Q psy10612 197 FT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFG-------------EPWTENP----GDGAFY--GPKIDITITDA 256 (426)
Q Consensus 197 i~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~-------------~~~~~~~----~~~~~~--~p~~~~~~~~~ 256 (426)
++ +.+.+|++ |..+++..+...|.+++.... .++.+.+ +..... +|.+...+.+.
T Consensus 185 l~~~~i~in~~-----g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~ 259 (467)
T 4e51_A 185 LTGIKLEINSL-----GLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDV 259 (467)
T ss_dssp CCCEEEEEEEC-----CCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHH
T ss_pred CCceEEEEeCC-----CchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHH
Confidence 95 99999774 444444444444444332210 0000000 000000 12111011100
Q ss_pred cCCceeeeeeee-eecCCeEEeEEEeCCCCccccCEEE------e--------------------------cccccchHH
Q psy10612 257 LKRPHQCATIQL-DFQLPIRFNLAYVNEKGEKNRPVMI------H--------------------------RAILGSVER 303 (426)
Q Consensus 257 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~y~~~v~~------~--------------------------~~~~GgleR 303 (426)
....+....-.+ .+.+...+|+..+++.+|||+.|+. + ..++ |+||
T Consensus 260 ~~~~l~~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~PavGfa~-gleR 338 (467)
T 4e51_A 260 SRAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAM-GIER 338 (467)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEEEEEE-EHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCceeehH-HHHH
Confidence 000000000000 0111122333333333344333310 0 0112 6999
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCC----CCCHHHHHHHHHHhCCcEEEE
Q psy10612 304 MVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDS----SDTLNKKIRNAQISQYNFIMV 379 (426)
Q Consensus 304 ll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~----~~~lgkk~~~A~~~gip~~ii 379 (426)
|+.+|.++ + .+|. .+|.+|+|+|++++..++|.+++++||++|++|++|. . +.++++|+++|++.|+||+||
T Consensus 339 l~~~l~~~-~-~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~-~~~~~~~sl~kq~~~A~~~g~~~~ii 414 (467)
T 4e51_A 339 ILELLKEE-H-LVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHC-SADGAGASFKSQMKRADASGAAFAVI 414 (467)
T ss_dssp HHHHHHHT-T-CCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECC-CTTSSCCCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhc-C-Cccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEc-ccccccCCHHHHHHHHHHcCCCEEEE
Confidence 99999875 3 3554 6889999999998888999999999999999999998 5 689999999999999999999
Q ss_pred EecCccCCCeEEEEEccC-C------eeeeecHHHHHHHHHHHH
Q psy10612 380 VGEKEKSSNTVNVRTRDN-I------VHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 380 iG~~E~~~~~v~vk~~~~-~------~q~~v~~~el~~~i~~~~ 416 (426)
||++|+++|+|+||++++ + +|..++++++++.|++.+
T Consensus 415 iG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 415 FGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp ECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred ECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 999999999999999999 8 999999999999998877
No 14
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1.2e-54 Score=441.74 Aligned_cols=359 Identities=18% Similarity=0.190 Sum_probs=269.2
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-cc-cccccccceEeeeC-CceEEEcCCCc
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g~-~~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
+.++|++||+|.+++++++|++.++++|+++||++|.||+|++.++|.++ |+ |+.+.++||+|.|+ |+.++||||.|
T Consensus 4 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t 83 (421)
T 1h4v_B 4 RAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGT 83 (421)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcch
Confidence 47899999999999999999999999999999999999999999999987 77 88999999999998 89999999999
Q ss_pred HHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC
Q psy10612 119 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 119 ~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi 197 (426)
++++|+++++..+++++|+|+||+|+|||+|+|+. ||+|||+|+|+|+||.++ .+|+|++.+ +.++|++||+
T Consensus 84 ~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~----gR~REf~Q~g~e~~g~~~~~ad~e~i~~---~~~~l~~lgl 156 (421)
T 1h4v_B 84 AAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQK----GRYRQFHQVNYEALGSENPILDAEAVVL---LYECLKELGL 156 (421)
T ss_pred HHHHHHHHhccccccCCCeEEEEecCeecCCCCCC----CCcccEEEccEEEECCCChhhhHHHHHH---HHHHHHHcCC
Confidence 99999998765567889999999999999998875 899999999999999988 789988755 5999999999
Q ss_pred e-EEEEEecCCCccCCCchhHHHHHHHHHHhhccC--C-----------CCcee----CCCCCccc----cCccceeeec
Q psy10612 198 T-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSF--G-----------EPWTE----NPGDGAFY----GPKIDITITD 255 (426)
Q Consensus 198 ~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~--~-----------~~~~~----~~~~~~~~----~p~~~~~~~~ 255 (426)
+ +.+.+++ +|+.+++..+...+.+++... . ..... .++..+++ +|++...+..
T Consensus 157 ~~~~i~i~~-----~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 231 (421)
T 1h4v_B 157 RRLKVKLSS-----VGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGE 231 (421)
T ss_pred CceEEEEcC-----CCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhH
Confidence 7 9999965 565554433332222222110 0 00000 00001111 2332211111
Q ss_pred -c---cCCceee-----eeeee--------eecCCeEEeEEE--------eCCCCccccCEE-E---eccccc---chHH
Q psy10612 256 -A---LKRPHQC-----ATIQL--------DFQLPIRFNLAY--------VNEKGEKNRPVM-I---HRAILG---SVER 303 (426)
Q Consensus 256 -~---~~~~~~~-----~~~~l--------~~~~~~~~~~~~--------~~~~~~y~~~v~-~---~~~~~G---gleR 303 (426)
+ ++..+.. .++.+ +++.+..|.... +.++|+|++.+. . ....+| |+||
T Consensus 232 ~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~igieR 311 (421)
T 1h4v_B 232 EARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVER 311 (421)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeecHHH
Confidence 0 0000000 01111 222223333221 112334433220 0 011123 5999
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecC
Q psy10612 304 MVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEK 383 (426)
Q Consensus 304 ll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~ 383 (426)
++++|.++ +..|| +.+|++|+|+|++++..++|.+++++||++ ++|++|+ ++.++++|+++|++.|+||+||||++
T Consensus 312 l~~~l~e~-~~~~~-~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~-~~~~~~~~~~~a~~~g~p~~iivG~~ 387 (421)
T 1h4v_B 312 VALALEAE-GFGLP-EEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYAL-APRKPAKGLEEALKRGAAFAGFLGED 387 (421)
T ss_pred HHHHHHhc-CcCCC-CCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEec-CCCCHHHHHHHHHhCCCCEEEEECch
Confidence 99999885 55455 569999999999988889999999999999 9999998 58899999999999999999999999
Q ss_pred ccCCCeEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 384 EKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 384 E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
|+++|+|+||++.+++|..++++++++.+++.+
T Consensus 388 e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 388 ELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred HhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 999999999999999999999999999987754
No 15
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1.2e-54 Score=441.60 Aligned_cols=353 Identities=16% Similarity=0.277 Sum_probs=255.1
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh--cccccccccceEeeeC-CceEEEcCCCc
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s--g~~~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
+.++|+++|+|.+++++++|+++++++|.++||++|.||+|++.++|.++ ++++.+.++||+|.|+ |+.++||||+|
T Consensus 3 ~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t 82 (420)
T 1qe0_A 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGT 82 (420)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSH
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCCh
Confidence 46899999999999999999999999999999999999999999999988 7899999999999987 88999999999
Q ss_pred HHHHHHHhhhhcCc-CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcC
Q psy10612 119 PGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFG 196 (426)
Q Consensus 119 ~~i~~~~~~~~~~~-~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lg 196 (426)
++++++++++..++ +++|+|+||+|+|||+|+++. +|+|||+|+|+|+||.++ .+|+|++.+ +.++|+.||
T Consensus 83 ~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~----gR~reF~q~~~e~~~~~~~~~d~e~i~~---~~~~l~~lg 155 (420)
T 1qe0_A 83 AAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK----GRYRQFNQFGVEAIGAENPSVDAEVLAM---VMHIYQSFG 155 (420)
T ss_dssp HHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHHHHHH---HHHHHHHTT
T ss_pred HHHHHHHHhccccccCCCCeEEEEecCEeecCCCcC----CCcccEEEeeEEEECCCCchhHHHHHHH---HHHHHHHcC
Confidence 99999999877787 899999999999999998876 899999999999999998 788887655 499999999
Q ss_pred Ce-EEEEEecCCCccCCCchhHHHHHHHHHHhhccC----C---------CCceeC----CCCCccc--cCccceeeec-
Q psy10612 197 FT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSF----G---------EPWTEN----PGDGAFY--GPKIDITITD- 255 (426)
Q Consensus 197 i~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~----~---------~~~~~~----~~~~~~~--~p~~~~~~~~- 255 (426)
++ +.+.+++ +|..+++..+.+.+.+++... . ..+... .+..... +|++...+.+
T Consensus 156 l~~~~i~l~~-----~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~ 230 (420)
T 1qe0_A 156 LKHLKLVINS-----VGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEE 230 (420)
T ss_dssp CCCEEEEEEE-----CCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTT
T ss_pred CCceEEEEcc-----cCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHH
Confidence 98 9999965 566555544444444444321 0 000000 0000000 1111000000
Q ss_pred -------------ccCCceeeee-e--eeeecCCeEEeEEEeCC------------CCccc----------cCEEEeccc
Q psy10612 256 -------------ALKRPHQCAT-I--QLDFQLPIRFNLAYVNE------------KGEKN----------RPVMIHRAI 297 (426)
Q Consensus 256 -------------~~~~~~~~~~-~--~l~~~~~~~~~~~~~~~------------~~~y~----------~~v~~~~~~ 297 (426)
..+..+.... + .++|+.+..|++ +.++ +|+|+ .|. + +.+
T Consensus 231 ~~~~l~~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~-~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~-v-g~~ 307 (420)
T 1qe0_A 231 SKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFEL-MMDNPNYDGAITTLCGGGRYNGLLELLDGPSETG-I-GFA 307 (420)
T ss_dssp HHHHHHHHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEE-EEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEE-E-EEE
T ss_pred HHHHHHHHHHHHHHcCCeEEECcccccchhhhcCeEEEE-EEcCCCCCCCcCccccCccHHHHHHHhCCCCCCE-E-EEE
Confidence 0010000000 0 012222223333 1111 12222 122 2 344
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEE
Q psy10612 298 LGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFI 377 (426)
Q Consensus 298 ~GgleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~ 377 (426)
+| +||++++| +++|+.||. ++|++|+|+|++++..++|.++++.||++|++|++|+ ++.++++|+++|++.|+||+
T Consensus 308 ig-veRl~~~l-e~~~~~~p~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~-~~~~~~~~~~~a~~~g~p~~ 383 (420)
T 1qe0_A 308 LS-IERLLLAL-EEEGIELDI-EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDY-LQRKIKGQMKQADRLGAKFT 383 (420)
T ss_dssp EE-HHHHHHHH-HHTTCCCCC-CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECC-SCCCHHHHHHHHHHTTCSEE
T ss_pred ec-HHHHHHHH-HhcCCCCCC-CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEec-CCCCHHHHHHHHHHcCCCEE
Confidence 54 99999987 667888998 8999999999987788899999999999999999998 57899999999999999999
Q ss_pred EEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHH
Q psy10612 378 MVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFG 413 (426)
Q Consensus 378 iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~ 413 (426)
||||++|+++|+|+||+|++++|..++++++++.|+
T Consensus 384 iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 384 IVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp EEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred EEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999999999999999999999999999998875
No 16
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=7.8e-55 Score=443.27 Aligned_cols=356 Identities=17% Similarity=0.220 Sum_probs=261.9
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-cc-cccccccceEeeeC-CceEEEcCCCc
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GH-WAHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g~-~~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
+.++|++||+|.+++++++|++.++++|+++||++|.||+|++.++|.++ |+ |+.+.++||+|.|+ |+.++||||.|
T Consensus 5 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t 84 (423)
T 1htt_A 5 QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGT 84 (423)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSH
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCch
Confidence 57899999999999999999999999999999999999999999999987 77 78899999999998 89999999999
Q ss_pred HHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC
Q psy10612 119 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 119 ~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi 197 (426)
++++|+++++ .+++++|+|+||+|+|||+|+|+. ||+|||+|+|+|+||.++ .+|+|++.+ +.++|++||+
T Consensus 85 ~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~p~~----gR~Ref~Q~d~e~~g~~~~~ad~e~i~~---~~~~l~~lgl 156 (423)
T 1htt_A 85 AGCVRAGIEH-GLLYNQEQRLWYIGPMFRHERPQK----GRYRQFHQLGCEVFGLQGPDIDAELIML---TARWWRALGI 156 (423)
T ss_dssp HHHHHHHHHH-TCSTTCCEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEESCCSHHHHHHHHHH---HHHHHHHHTC
T ss_pred HHHHHHHHhc-ccccCCCeEEEEEcCEecCCCCCC----CccceeEEeeEEEECCCCchhhHHHHHH---HHHHHHHCCC
Confidence 9999999865 346789999999999999998875 899999999999999988 789988654 5999999999
Q ss_pred -e-EEEEEecCCCccCCCchhHHHHHHHHHHhhccC--------CCCc-----ee----CCCCCccc--cCccceeeec-
Q psy10612 198 -T-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSF--------GEPW-----TE----NPGDGAFY--GPKIDITITD- 255 (426)
Q Consensus 198 -~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~--------~~~~-----~~----~~~~~~~~--~p~~~~~~~~- 255 (426)
+ +.+.+++ +|+.+++..+...+.+++... ...+ .. ..+..+++ +|++...+..
T Consensus 157 ~~~~~i~i~~-----~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~ 231 (423)
T 1htt_A 157 SEHVTLELNS-----IGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEE 231 (423)
T ss_dssp GGGCEEEEEE-----CCCHHHHHHC---------------------------------------------------CCHH
T ss_pred CCCcEEEEcC-----CCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHH
Confidence 5 9999976 454443322222221111100 0000 00 01112222 3433221111
Q ss_pred ccCC---ceeeeeeeeeecCCeEEeEEEeCCCCccccCEE-------------------------Ee---ccccc---ch
Q psy10612 256 ALKR---PHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVM-------------------------IH---RAILG---SV 301 (426)
Q Consensus 256 ~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~-------------------------~~---~~~~G---gl 301 (426)
++.. .+.. +. .+.+...+|++.+++.+||++.++ .+ ...+| |+
T Consensus 232 ~~~~l~~~~~~--l~-~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pavGf~igv 308 (423)
T 1htt_A 232 SREHFAGLCKL--LE-SAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 308 (423)
T ss_dssp HHHHHHHHHHH--HH-TTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEEEEEEEH
T ss_pred HHHHHHHHHHH--HH-HcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeEEEEecH
Confidence 1000 0000 00 011112233333334444443321 00 01122 69
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHC--CCeEEEcCCCCCCHHHHHHHHHHhCCcEEEE
Q psy10612 302 ERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAA--GFMCDADLDSSDTLNKKIRNAQISQYNFIMV 379 (426)
Q Consensus 302 eRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~--Gi~v~~d~~~~~~lgkk~~~A~~~gip~~ii 379 (426)
||++++|.++ +..|| +.+|++|+|+|++++..++|.+++++||++ |++|++|+ ++.++++|+++|++.|+||+||
T Consensus 309 eRl~~~l~e~-~~~~~-~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~-~~~~~~~~~~~a~~~g~p~~ii 385 (423)
T 1htt_A 309 ERLVLLVQAV-NPEFK-ADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNH-GGGNFKKQFARADKWGARVAVV 385 (423)
T ss_dssp HHHHHHHHHH-STTCC-CCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECC-SCCCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhc-CcCCC-CCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeC-CCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999886 55555 458999999999888889999999999999 99999998 5789999999999999999999
Q ss_pred EecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 380 VGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 380 iG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
||++|+++|+|+||+|.+++|..++++++++.+++.+
T Consensus 386 iG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 386 LGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp ECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred ECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998764
No 17
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=4.9e-54 Score=443.87 Aligned_cols=375 Identities=19% Similarity=0.159 Sum_probs=289.8
Q ss_pred ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHH--HcCCeEeecccccchhhHhHhccccccc
Q psy10612 25 VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYR--KRGFQEVVSPNVYNVKLWQTSGHWAHYS 98 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~--~~G~~~i~tP~l~~~~l~~~sg~~~~~~ 98 (426)
-..+.+|++++|+++... .++|+++|+|.|++++++|+++|++.+. ++||++|.||+|++.++|..||||+.|.
T Consensus 5 ~~~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~ 84 (505)
T 1ati_A 5 LDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFA 84 (505)
T ss_dssp HHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCE
T ss_pred HHHHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcC
Confidence 457899999999765532 3599999999999999999999999998 9999999999999999999999999998
Q ss_pred ccceEe-------------------------------------------e-----------------eC-----------
Q psy10612 99 ENMFSF-------------------------------------------D-----------------VE----------- 107 (426)
Q Consensus 99 ~e~y~~-------------------------------------------~-----------------d~----------- 107 (426)
++||++ + +.
T Consensus 85 d~m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~ 164 (505)
T 1ati_A 85 DPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRY 164 (505)
T ss_dssp EEEEEC--------------------------------------------------------------------CCCCEE
T ss_pred ccceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccch
Confidence 888873 1 11
Q ss_pred ---------------CceEEEcCCCcHHHHHHHhhhhcCc-CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEe
Q psy10612 108 ---------------NETYALKPMNCPGHCLIFDHRVRSW-RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 171 (426)
Q Consensus 108 ---------------~~~~~LrP~~t~~i~~~~~~~~~~~-~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~f 171 (426)
++.++|||++|++++..|++.+.+| ++||+++||+|+|||+|.++ +.||.|+|||+|.|+|+|
T Consensus 165 fnlmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~p-r~GL~R~REF~q~d~~~f 243 (505)
T 1ati_A 165 FNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITP-RNFIFRVREFEQMEIEYF 243 (505)
T ss_dssp EECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSC-CTGGGSCSEEEEEEEEEE
T ss_pred hhhhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCC-CCCCCcccceEEeeEEEE
Confidence 2467999999999988888878888 89999999999999999877 799999999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHHcCCe-EEEEEecCC-CccC-CCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCc
Q psy10612 172 CTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP-EKYL-GELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPK 248 (426)
Q Consensus 172 g~~~~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~-~~~~-G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~ 248 (426)
+.++++..++..++.++.++|++|||+ +.+.+...+ .... +...+|+. +++...+ +.... +..+++.
T Consensus 244 ~~~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~------E~~~p~~--~~e~~--g~~~~~d 313 (505)
T 1ati_A 244 VRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDI------LYRFPHG--SLELE--GIAQRTD 313 (505)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEE------EEEETTE--EEEEE--EEEECTT
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhH------HhhcCCC--Cccch--hhhcccc
Confidence 999888888888889999999999997 455554432 2222 33333321 0110000 00000 0001111
Q ss_pred cceeeec-ccCCceeeeeeeeeecCCeEEeEEEeCCCCc--cccCEEEecccccchHHHHHHHHHhc-------------
Q psy10612 249 IDITITD-ALKRPHQCATIQLDFQLPIRFNLAYVNEKGE--KNRPVMIHRAILGSVERMVAILTESY------------- 312 (426)
Q Consensus 249 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--y~~~v~~~~~~~GgleRll~~l~e~~------------- 312 (426)
.+..... ..+..+ .+.+.+++...+++++|.++.|. | .|+.++ .++| +||++++|+|++
T Consensus 314 ~~L~~~~~~~~~~~--~~~~~~~n~~~~~~~~y~d~~g~~~y-~p~vig-~s~G-ieRli~alle~~~~~~~~~~gd~~~ 388 (505)
T 1ati_A 314 FDLGSHTKDQEALG--ITARVLRNEHSTQRLAYRDPETGKWF-VPYVIE-PSAG-VDRGVLALLAEAFTREELPNGEERI 388 (505)
T ss_dssp HHHHHHCSSTTTTT--CCSCCCCCSCCCSCCCEECSSSCCEE-CCEEEE-EEEE-HHHHHHHHHHHHEEEEECTTSCEEE
T ss_pred eecchhhccccccc--eeeeecccccceeEEEEEcCCCCeee-cceEEE-EeeE-HHHHHHHHHHHHhhhcccccccccc
Confidence 0000000 001111 11223455557788888876543 4 354443 4576 999999999763
Q ss_pred CCCCCCCCCCceEEEEeCCC---ChHHHHHHHHHHHHHCC-CeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccC--
Q psy10612 313 AGKWPFWISPRQGIVIPVAE---PFNEYADQVKNKIFAAG-FMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKS-- 386 (426)
Q Consensus 313 g~~~p~~~ap~~V~Vi~~~~---~~~~~a~~ia~~Lr~~G-i~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~-- 386 (426)
++.||++++|++|+|+|+++ +..++|.+|++.||++| ++|++|+ + .++|+|+++|+++|+||+||||++|++
T Consensus 389 gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~-~-~sig~k~~~ad~~g~p~~iivG~~el~~~ 466 (505)
T 1ati_A 389 VLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYED-T-GNIGKAYRRHDEVGTPFAVTVDYDTIGQS 466 (505)
T ss_dssp EECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECC-C-SCHHHHHHHHHHTTCSEEEEECHHHHTCC
T ss_pred cccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECC-C-CCHHHHHHHHHHCCCCEEEEEChHHhhhc
Confidence 24699999999999999987 68899999999999999 9999998 5 799999999999999999999999999
Q ss_pred -------CCeEEEEEccCCeeeeecHHHHHHHHHHHHh
Q psy10612 387 -------SNTVNVRTRDNIVHGEFSVDDVITRFGKLKE 417 (426)
Q Consensus 387 -------~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~ 417 (426)
+|+|+||+|++++|..|+++++++.|++.++
T Consensus 467 ~~~~~~~~g~V~vr~r~t~~q~~v~~~el~~~l~~~l~ 504 (505)
T 1ati_A 467 KDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERLR 504 (505)
T ss_dssp TTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHHC
T ss_pred cccccccCCEEEEEECCCCceEEEEHHHHHHHHHHHhc
Confidence 9999999999999999999999999987653
No 18
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=4.6e-54 Score=438.81 Aligned_cols=355 Identities=15% Similarity=0.221 Sum_probs=266.5
Q ss_pred ccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhH-hcccccccccceEeeeC-CceEEEcCCCc
Q psy10612 41 HELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT-SGHWAHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 41 ~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~-sg~~~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
.+.++|++||+|.+++++++|++.++++|+++||++|.||+|++.++|.+ +|+ .+.++||+|.|+ |+.++||||.|
T Consensus 6 ~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~~l~LrPd~t 83 (434)
T 1wu7_A 6 IEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGREVTLIPEAT 83 (434)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSCEEEECSCSH
T ss_pred cCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCCEEEeCCCCh
Confidence 45789999999999999999999999999999999999999999999998 576 678999999998 89999999999
Q ss_pred HHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC
Q psy10612 119 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 119 ~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi 197 (426)
++++|+++++ .++ ++|+|+||+|+|||+|+|+. ||+|||+|+|+|+||.++ .+|+|++.+ +.++|++||+
T Consensus 84 ~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~erp~~----gR~REF~Q~d~ei~g~~~~~ad~E~i~~---~~~~l~~lgl 154 (434)
T 1wu7_A 84 PSTVRMVTSR-KDL-QRPLRWYSFPKVWRYEEPQA----GRYREHYQFNADIFGSDSPEADAEVIAL---ASSILDRLGL 154 (434)
T ss_dssp HHHHHHHTTC-TTC-CSSEEEEECCEEECCCCSCS----SCCSEEEEEEEEEESCCSHHHHHHHHHH---HHHHHHHTTT
T ss_pred HHHHHHHHhc-CCC-CCCeEEEEEcCeecCCCCCC----CCccceEEeeEEEEcCCChHhhHHHHHH---HHHHHHHcCC
Confidence 9999999876 555 79999999999999998875 899999999999999988 788988644 5999999999
Q ss_pred e--EEEEEecCC--Cc---cCCCchhHHHHHHHHHHhhccC---------------CCCceeCCCCCccc--cCccceee
Q psy10612 198 T--FNLRLSTRP--EK---YLGELEVWNKAEKQLEASLNSF---------------GEPWTENPGDGAFY--GPKIDITI 253 (426)
Q Consensus 198 ~--~~i~~~~~~--~~---~~G~~~~~~~~~~~l~~~l~~~---------------~~~~~~~~~~~~~~--~p~~~~~~ 253 (426)
+ +.+.++++. .. .+| ++.|. .+..++... +.+....+...+++ +|+++. +
T Consensus 155 ~~~~~i~l~~~g~~~~~~~~~g-~~~~~----~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-l 228 (434)
T 1wu7_A 155 QDIYEIRINSRKIMEEIIGGMT-SSDPF----SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDE-M 228 (434)
T ss_dssp TTSEEEEEEEHHHHHHHHHTTC-SSCHH----HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHH-H
T ss_pred CCceEEEECChhhHHHHHHHhC-cHhHH----HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHH-H
Confidence 7 999999862 11 233 34432 223333221 11110000011122 343221 1
Q ss_pred e-------cccCCceeeeeeeeeecCC-eEEeEEEeCCCCccccCEE---Ee------------------------cccc
Q psy10612 254 T-------DALKRPHQCATIQLDFQLP-IRFNLAYVNEKGEKNRPVM---IH------------------------RAIL 298 (426)
Q Consensus 254 ~-------~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~y~~~v~---~~------------------------~~~~ 298 (426)
. +++.....+...--.+.+. ..+|+.++++.+||++.++ .. ...+
T Consensus 229 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~ 308 (434)
T 1wu7_A 229 ARITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAV 308 (434)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEE
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeE
Confidence 1 1111000000000001111 2233333344444443321 00 0112
Q ss_pred c---chHHHHHHHHHhcCCCC-CCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCC
Q psy10612 299 G---SVERMVAILTESYAGKW-PFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQY 374 (426)
Q Consensus 299 G---gleRll~~l~e~~g~~~-p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gi 374 (426)
| |+|||+++|.++ + .| |. +|++|+|+|++++..++|.+++++||++|++|++|+ ++.++++|+++|++.|+
T Consensus 309 Gf~igveRl~~~l~e~-~-~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~-~~~~~~~~~~~a~~~g~ 383 (434)
T 1wu7_A 309 GFGMGDAVISLLLKRE-N-VQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEI-MERGLSAQLKYASAIGA 383 (434)
T ss_dssp EEEEEHHHHHHHHHHT-T-CCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECC-SCCCHHHHHHHHHHTTC
T ss_pred EEEEcHHHHHHHHHhc-C-CccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEec-CCCCHHHHHHHHHHCCC
Confidence 3 699999999886 3 67 76 789999999988888999999999999999999998 57899999999999999
Q ss_pred cEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHh
Q psy10612 375 NFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKE 417 (426)
Q Consensus 375 p~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~ 417 (426)
|++||||++|+++|+|+||++.++++..++++++++.+++.+.
T Consensus 384 ~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 384 DFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp SEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred CEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999877653
No 19
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=4.1e-53 Score=449.41 Aligned_cols=388 Identities=19% Similarity=0.247 Sum_probs=273.1
Q ss_pred hhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHH-HcCCeEeecccccchhhHhHhccccccccc
Q psy10612 26 LWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 100 (426)
Q Consensus 26 ~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~-~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e 100 (426)
....+|++++|+++... .++|++||+|.|++++++|+++|++.|. ..||++|.||+|++.++|.+||||+.|.+.
T Consensus 68 ~~~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~ 147 (693)
T 2zt5_A 68 AKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADF 147 (693)
T ss_dssp HHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEE
T ss_pred HHHHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCccccccc
Confidence 35578889989765532 2599999999999999999999999997 569999999999999999999999999887
Q ss_pred ceEeee--------------------------------------------------------------------------
Q psy10612 101 MFSFDV-------------------------------------------------------------------------- 106 (426)
Q Consensus 101 ~y~~~d-------------------------------------------------------------------------- 106 (426)
|+++++
T Consensus 148 m~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlm 227 (693)
T 2zt5_A 148 MVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLM 227 (693)
T ss_dssp EEEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECC
T ss_pred ceeeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhhee
Confidence 664322
Q ss_pred --------CCceEEEcCCCcHHHHHHHhhhhcC-cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccch
Q psy10612 107 --------ENETYALKPMNCPGHCLIFDHRVRS-WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI 177 (426)
Q Consensus 107 --------~~~~~~LrP~~t~~i~~~~~~~~~~-~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~ 177 (426)
.++.++|||++|++++..|++...+ +++||+++||||++||||.++ ++||.|+|||+|+|+|+||.+++.
T Consensus 228 f~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisP-r~GLlR~REF~q~d~e~F~~p~~~ 306 (693)
T 2zt5_A 228 FKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISP-RSGLIRVREFTMAEIEHFVDPSEK 306 (693)
T ss_dssp CEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSC-CSGGGSCSEEEEEEEEEEECTTCC
T ss_pred eeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCC-CCCCccceeeEEccceEEeCcchh
Confidence 1367899999999998888877655 689999999999999999887 799999999999999999988732
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHcCCe-EEEEEecC-CC-cc--
Q psy10612 178 ------------------------------------------GDEIVGALDFLRNVYSIFGFT-FNLRLSTR-PE-KY-- 210 (426)
Q Consensus 178 ------------------------------------------~~e~~~~~~~~~~il~~lgi~-~~i~~~~~-~~-~~-- 210 (426)
..++..++..+.+++..+|++ ..+.+..+ +. ..
T Consensus 307 ~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~y 386 (693)
T 2zt5_A 307 DHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHY 386 (693)
T ss_dssp CCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTT
T ss_pred cchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccc
Confidence 133444566779999999996 44554433 11 11
Q ss_pred ------------CCCchhHHH---HHHHHHHhhccCCCCce---------------eCCCCCccccCccce---eeeccc
Q psy10612 211 ------------LGELEVWNK---AEKQLEASLNSFGEPWT---------------ENPGDGAFYGPKIDI---TITDAL 257 (426)
Q Consensus 211 ------------~G~~~~~~~---~~~~l~~~l~~~~~~~~---------------~~~~~~~~~~p~~~~---~~~~~~ 257 (426)
.|..++|.. ....|...+...+.++. ..++.+++ +|++.. .+.|.+
T Consensus 387 a~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L 465 (693)
T 2zt5_A 387 ACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYL 465 (693)
T ss_dssp CSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC-----------------------------------
T ss_pred hhhhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHh
Confidence 121111111 11223333332233332 12233333 444321 122222
Q ss_pred CCceee------------e--eeeee---ecCCe-EEeEE-E--eCCCCccccCEEEecccccchHHHHHHHHHh-c---
Q psy10612 258 KRPHQC------------A--TIQLD---FQLPI-RFNLA-Y--VNEKGEKNRPVMIHRAILGSVERMVAILTES-Y--- 312 (426)
Q Consensus 258 ~~~~~~------------~--~~~l~---~~~~~-~~~~~-~--~~~~~~y~~~v~~~~~~~GgleRll~~l~e~-~--- 312 (426)
+..+.+ + ++..+ |.+.. .+++. | ...++.|+ |.+++ .++| ++|++++|+|+ +
T Consensus 466 ~~~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~-P~Vi~-~s~G-igRli~aLie~~~~~~ 542 (693)
T 2zt5_A 466 AICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVV-PNVIE-PSFG-LGRIMYTVFEHTFHVR 542 (693)
T ss_dssp ----------------------------------------------CCEEEC-CEEEE-EEEE-HHHHHHHHHHHHEEEC
T ss_pred hhhhHHHHHHHHHHHHhcCCEEEEECCEEEEecccccceeeEEeccCCcEec-Cccee-Ceeh-HHHHHHHHHHHhcccc
Confidence 222211 1 11111 33221 11111 1 11334553 55433 2456 99999999886 1
Q ss_pred -------CCCCCCCCCCceEEEEeCCCC--hHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecC
Q psy10612 313 -------AGKWPFWISPRQGIVIPVAEP--FNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEK 383 (426)
Q Consensus 313 -------g~~~p~~~ap~~V~Vi~~~~~--~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~ 383 (426)
|+.||++++|++|+|+|++++ ..++|.+|++.||++|++|.+|+ ++.++|+||++|+++|+||+||||++
T Consensus 543 ~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~-~~~sigkk~k~Ad~~G~p~~IiIG~~ 621 (693)
T 2zt5_A 543 EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDD-SSGSIGRRYARTDEIGVAFGVTIDFD 621 (693)
T ss_dssp SSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECC-CCSCHHHHHHHHHHTTCCEEEEECHH
T ss_pred ccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHcCCCEEEEEcch
Confidence 468999999999999999864 88999999999999999999998 58899999999999999999999999
Q ss_pred cc--CCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhc
Q psy10612 384 EK--SSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENR 419 (426)
Q Consensus 384 E~--~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~ 419 (426)
|+ ++|+|+||+|++++|..++++++++.|++.++.+
T Consensus 622 El~~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~~~ 659 (693)
T 2zt5_A 622 TVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659 (693)
T ss_dssp HHTSSSCEEEEEETTTCCEEEEETTTHHHHHHHHHTTS
T ss_pred hhhccCCEEEEEECCCCceEEEeHHHHHHHHHHHHhCc
Confidence 99 9999999999999999999999999999887654
No 20
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.3e-52 Score=426.68 Aligned_cols=375 Identities=12% Similarity=0.135 Sum_probs=250.8
Q ss_pred hhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEee
Q psy10612 26 LWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD 105 (426)
Q Consensus 26 ~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~ 105 (426)
+.|+.++++ + +.-++|+|++||+|.++.++++|++.++++|+++||++|.||+|+++++|.++.+.+ .++||+|.
T Consensus 2 p~~~~~~~~-~--~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~--~~~~y~f~ 76 (464)
T 4g84_A 2 PGSEFELRR-Q--FVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED--SKLIYDLK 76 (464)
T ss_dssp --------------CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBC
T ss_pred CchhhhHhh-c--cceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC--cceeEEEE
Confidence 567888887 4 344689999999999999999999999999999999999999999999998765433 58899999
Q ss_pred eC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc--chHHHHH
Q psy10612 106 VE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIV 182 (426)
Q Consensus 106 d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~--~~~~e~~ 182 (426)
|+ |+.++||||.|+|++|+++.+ +.+|+|+||+|+|||+|+|+ .|.+|+|||+|+|+|+||..+ .+|+|++
T Consensus 77 D~~g~~l~LRPd~T~~~aR~~~~~----~~~p~k~~y~g~vfR~erp~--~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi 150 (464)
T 4g84_A 77 DQGGELLSLRYDLTVPFARYLAMN----KLTNIKRYHIAKVYRRDNPA--MTRGRYREFYQCDFDIAGNFDPMIPDAECL 150 (464)
T ss_dssp CCSSCCEEECSCSHHHHHHHHHHT----TCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHHHHHH
T ss_pred CCCCCEEEeCCcCcHHHHHHHHhc----CCCCceeEEEecceeccCCc--cccCccceeeecceeccCCccchhhHHHHH
Confidence 98 899999999999999988753 45799999999999999774 355899999999999999765 5799987
Q ss_pred HHHHHHHHHHHHcCCe-EEEEEecCC-----CccCCCchhHHHHH------------HHHHH-hhccCCCCcee------
Q psy10612 183 GALDFLRNVYSIFGFT-FNLRLSTRP-----EKYLGELEVWNKAE------------KQLEA-SLNSFGEPWTE------ 237 (426)
Q Consensus 183 ~~~~~~~~il~~lgi~-~~i~~~~~~-----~~~~G~~~~~~~~~------------~~l~~-~l~~~~~~~~~------ 237 (426)
.+ +.++|+.||+. +.+.++++. ...+|.++...... +.+.+ .+...+..-..
T Consensus 151 ~l---~~~~l~~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 227 (464)
T 4g84_A 151 KI---MCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGD 227 (464)
T ss_dssp HH---HHHHHHHHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HH---HHHHHHHhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 65 49999999996 999998752 01233332211100 00000 00000000000
Q ss_pred ---CCCCCc-----cccCccc-ee-eecccCCceee--eeee-eeecCCeEEeEEEeCCCCccccCEE------------
Q psy10612 238 ---NPGDGA-----FYGPKID-IT-ITDALKRPHQC--ATIQ-LDFQLPIRFNLAYVNEKGEKNRPVM------------ 292 (426)
Q Consensus 238 ---~~~~~~-----~~~p~~~-~~-~~~~~~~~~~~--~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~------------ 292 (426)
..+... ...+++. .. ..+.+. ++.. ..+. ........+|++.+++.+|||++++
T Consensus 228 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~ 306 (464)
T 4g84_A 228 YVQQHGGVSLVEQLLQDPKLSQNKQALEGLG-DLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAG 306 (464)
T ss_dssp HHTCEESHHHHHHHTTCHHHHTCHHHHHHHH-HHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC----
T ss_pred HHHhcCCchHHHHHHhcccccccHHHHHHHH-HHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccc
Confidence 000000 0000000 00 000000 0000 0000 0000012233333444444444331
Q ss_pred ---------------------E---e------cccccchHHHHHHHHHhcCCCCCC--CCCCceEEEEeCCCChHHHHHH
Q psy10612 293 ---------------------I---H------RAILGSVERMVAILTESYAGKWPF--WISPRQGIVIPVAEPFNEYADQ 340 (426)
Q Consensus 293 ---------------------~---~------~~~~GgleRll~~l~e~~g~~~p~--~~ap~~V~Vi~~~~~~~~~a~~ 340 (426)
+ + +.++ |+||++.+|.++ +..||+ +..+.+|+|++.+++...+|.+
T Consensus 307 ~~~~~~~~i~~GGRYD~L~~~~~~~g~~~pavGfai-gieRl~~~l~~~-~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~ 384 (464)
T 4g84_A 307 EEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSI-GVERIFSIVEQR-LEALEEKIRTTETQVLVASAQKKLLEERLK 384 (464)
T ss_dssp ---EEEEEEEEEEECCSTGGGTSTTCCCCCEEEEEE-CHHHHHHHHHHH-HHTTTCCCCSCCCCEEEECSSSSCHHHHHH
T ss_pred cCCcccceeccCCchhHHHHHhccCCCCCCCccccc-cHHHHHHHHHHh-ccccCcccccccceEEEEeCCHHHHHHHHH
Confidence 0 0 0112 599999988765 333443 3457899999999999999999
Q ss_pred HHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHh
Q psy10612 341 VKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKE 417 (426)
Q Consensus 341 ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~ 417 (426)
|+++||++|++|++|++...++++||++|++.|+||+||||++|+++|+|+||||.||+|.+|++++++++|++.++
T Consensus 385 l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 461 (464)
T 4g84_A 385 LVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 461 (464)
T ss_dssp HHHHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHT
T ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 99999999999999874456899999999999999999999999999999999999999999999999999998775
No 21
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=1.2e-52 Score=430.90 Aligned_cols=360 Identities=16% Similarity=0.193 Sum_probs=262.5
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhccccccccc-ceEeeeC-------------
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN-MFSFDVE------------- 107 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e-~y~~~d~------------- 107 (426)
+.++|++||+|.++.++++|++.++++|+++||++|.||+||+.++|.++| +. .++ ||+|.|+
T Consensus 13 ~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~-~ke~m~~~~d~~~~g~~~~~~~~~ 89 (465)
T 3net_A 13 STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQ-GDNIIYGLEPILPPNRQAEKDKSG 89 (465)
T ss_dssp SCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC---CBEEEEEEEC------------
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CC-CccceEEEeccccccccccccccc
Confidence 468999999999999999999999999999999999999999999999884 43 477 9999997
Q ss_pred ---CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-ch--HHHH
Q psy10612 108 ---NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QI--GDEI 181 (426)
Q Consensus 108 ---~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~--~~e~ 181 (426)
|+.++||||.|+|++|+++.+.. +.++|+|+||+|+|||+|+||. +|+|||+|+|+|+||.++ .+ |+|+
T Consensus 90 ~~~g~~l~LRpd~T~~~aR~~~~~~~-~~~~p~r~~y~g~vfR~e~~~~----gr~Ref~Q~g~ei~G~~~~~a~~DaEv 164 (465)
T 3net_A 90 DTGSEARALKFDQTVPLAAYIARHLN-DLTFPFARYQMDVVFRGERAKD----GRFRQFRQCDIDVVGREKLSLLYDAQM 164 (465)
T ss_dssp ----CCEEECSCSHHHHHHHHHHHGG-GSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHHHHH
T ss_pred CCCCCEEEeCCCChHHHHHHHHhccc-ccCCCeEEEEeccEEecCCCCC----CCcceeEEeeEEEECCCCccchhhHHH
Confidence 68999999999999999987653 5678999999999999999997 999999999999999988 88 9999
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEecCC-----CccCCCchhHHHH------------HHHHHHhhccCCCCceeCCCCC-
Q psy10612 182 VGALDFLRNVYSIFGFT-FNLRLSTRP-----EKYLGELEVWNKA------------EKQLEASLNSFGEPWTENPGDG- 242 (426)
Q Consensus 182 ~~~~~~~~~il~~lgi~-~~i~~~~~~-----~~~~G~~~~~~~~------------~~~l~~~l~~~~~~~~~~~~~~- 242 (426)
+.++ .++|+.||++ +.+.+||+. .+.+|.++.|... .+.+.+.+...+.+....+...
T Consensus 165 i~l~---~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 241 (465)
T 3net_A 165 PAII---TEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIID 241 (465)
T ss_dssp HHHH---HHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHH---HHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8665 9999999996 999999864 1245665543211 1111222222222111000000
Q ss_pred --ccccCc---cce---ee---ec--ccCCcee-eeeeee-ee-cCC----eEEeEEEeCCCCccccCEEE----e----
Q psy10612 243 --AFYGPK---IDI---TI---TD--ALKRPHQ-CATIQL-DF-QLP----IRFNLAYVNEKGEKNRPVMI----H---- 294 (426)
Q Consensus 243 --~~~~p~---~~~---~~---~~--~~~~~~~-~~~~~l-~~-~~~----~~~~~~~~~~~~~y~~~v~~----~---- 294 (426)
.+.|+. ++. .+ .+ ....... ...+.+ .+ .-. ..+|++.+++.+|||++|+- +
T Consensus 242 l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~~ 321 (465)
T 3net_A 242 FVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEAL 321 (465)
T ss_dssp HHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTCGGG
T ss_pred HHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEccCccCCCcccCceEEEEEECCCCcc
Confidence 011221 000 00 00 0000000 000000 01 002 34566666666777666630 0
Q ss_pred -------------c-------cccc---chHHHHHHHHHhcCCCCCC-CCCCceEEEEeCCCChHHHHHHHHHHHHHCCC
Q psy10612 295 -------------R-------AILG---SVERMVAILTESYAGKWPF-WISPRQGIVIPVAEPFNEYADQVKNKIFAAGF 350 (426)
Q Consensus 295 -------------~-------~~~G---gleRll~~l~e~~g~~~p~-~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi 350 (426)
. ..+| |+||++.+|.++ | .||. +.+|.+|+|+|++++..++|.+++++||++|+
T Consensus 322 ~~i~~GGRYD~L~~~f~g~~~pavGfaiGieRli~~L~e~-g-~~p~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi 399 (465)
T 3net_A 322 GSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKA-G-ILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGL 399 (465)
T ss_dssp CCSSEEEEESSSSGGGTCSCCCEEEEEEEHHHHHHHHHHT-T-SSCCCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTC
T ss_pred ceecccccHHHHhhhhcCCCCceeeeeccHHHHHHHHHHc-C-CCCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCC
Confidence 0 0111 699999999886 4 4886 78999999999998889999999999999999
Q ss_pred eEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCC-eEEEEEccCCeeeeecHHHHHHHHHHHH
Q psy10612 351 MCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSN-TVNVRTRDNIVHGEFSVDDVITRFGKLK 416 (426)
Q Consensus 351 ~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~-~v~vk~~~~~~q~~v~~~el~~~i~~~~ 416 (426)
+|++|+ ++.++++|+++|++.|+||+||||++ +++| +|+||+|.+++|..++++++++.|++.+
T Consensus 400 ~ve~d~-~~~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 400 NVITNF-EKRQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp CEEECC-SCCCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred EEEEEe-CCCCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 999998 58899999999999999999999999 9999 9999999999999999999999987653
No 22
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=2e-52 Score=435.20 Aligned_cols=361 Identities=12% Similarity=0.155 Sum_probs=254.1
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPG 120 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~ 120 (426)
++|+|++||+|.++.++++|++.++++|+++||++|.||+|+++++|.++.+.+ .++||+|.|+ |+.++||||.|+|
T Consensus 68 ~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~--~~~my~f~D~~g~~l~LRPd~T~~ 145 (517)
T 4g85_A 68 KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED--SKLIYDLKDQGGELLSLRYDLTVP 145 (517)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCTTSCCEEECSCSHHH
T ss_pred eCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC--cceeEEEECCCCCEEEeCCcCcHH
Confidence 578999999999999999999999999999999999999999999998655433 5789999998 8999999999999
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc--chHHHHHHHHHHHHHHHHHcCCe
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~--~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
++|+++.+ +.+|+|+||+|+|||+|+|+. +.||+|||+|+|+|+||..+ .+|+|++.+ +.++|+.||+.
T Consensus 146 ~aR~~~~~----~~~p~k~yyig~vfR~Erp~~--~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l---~~~~l~~lgl~ 216 (517)
T 4g85_A 146 FARYLAMN----KLTNIKRYHIAKVYRRDNPAM--TRGRYREFYQCDFDIAGNFDPMIPDAECLKI---MCEILSSLQIG 216 (517)
T ss_dssp HHHHHHHT----TCSCEEEEEEEEEECCCC---------CCEEEEEEEEEESCCCTTHHHHHHHHH---HHHHHHHHCCC
T ss_pred HHHHHHhC----CCCCceeEEEeceEeccCccc--ccCccceeeeeceeccCCccchHHHHHHHHH---HHHHHHhhcCC
Confidence 99998753 457999999999999998742 23799999999999999865 579998765 49999999996
Q ss_pred -EEEEEecCC-----CccCCCchhHHHHHHHHHHhhcc----------------CCCCcee---------CCCCCcc---
Q psy10612 199 -FNLRLSTRP-----EKYLGELEVWNKAEKQLEASLNS----------------FGEPWTE---------NPGDGAF--- 244 (426)
Q Consensus 199 -~~i~~~~~~-----~~~~G~~~~~~~~~~~l~~~l~~----------------~~~~~~~---------~~~~~~~--- 244 (426)
+.+.+|++. .+.+|.++.+... +...++. .+..... ..+....
T Consensus 217 ~~~i~in~~~~l~~~~~~~~~~~~~~~~---~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 293 (517)
T 4g85_A 217 DFLVKVNDRRILDGMFAICGVSDSKFRT---ICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQ 293 (517)
T ss_dssp CEEEEEEEHHHHHHHHHHHTCCHHHHHH---HHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHH
T ss_pred cccccccchhhHHHHHHhhcchHHHHHH---HHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Confidence 999998852 1123433321111 1111110 0000000 0000000
Q ss_pred --ccCccce-e-eecccCCceee--eeee-eeecCCeEEeEEEeCCCCccccCEEEe----------------cc-----
Q psy10612 245 --YGPKIDI-T-ITDALKRPHQC--ATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIH----------------RA----- 296 (426)
Q Consensus 245 --~~p~~~~-~-~~~~~~~~~~~--~~~~-l~~~~~~~~~~~~~~~~~~y~~~v~~~----------------~~----- 296 (426)
..+++.. . ..+.+. ++.. ..+. ........+|++.+++.+|||++++-. .+
T Consensus 294 ~~~~~~~~~~~~~~~~l~-~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GG 372 (517)
T 4g85_A 294 LLQDPKLSQNKQALEGLG-DLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGG 372 (517)
T ss_dssp HHHCHHHHTCHHHHHHHH-HHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEE
T ss_pred HHhcccccccHHHHHHHH-HHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCC
Confidence 0000000 0 000000 0000 0000 000111334555666666766665210 00
Q ss_pred -----------------ccc---chHHHHHHHHHhc-CCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEc
Q psy10612 297 -----------------ILG---SVERMVAILTESY-AGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDAD 355 (426)
Q Consensus 297 -----------------~~G---gleRll~~l~e~~-g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d 355 (426)
.+| |+|||+.+|.++. +..+|.+.+|.+|+|++.+++..++|.+|++.||++|++|++|
T Consensus 373 RYD~Lv~~f~~~G~~~pavGfa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~ 452 (517)
T 4g85_A 373 RYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELL 452 (517)
T ss_dssp ECHHHHHTTSSSCCCCCEEEEEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEEC
T ss_pred chhHHHHHhccCCCCCCcccccchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 011 6999999886542 3445566688999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHh
Q psy10612 356 LDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKE 417 (426)
Q Consensus 356 ~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~ 417 (426)
+....++++||++|++.|+||+||||++|+++|+|+|||+.||+|.+|++++++++|++.++
T Consensus 453 ~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 453 YKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp SSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC
T ss_pred eCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 74456899999999999999999999999999999999999999999999999999988764
No 23
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=5e-50 Score=409.09 Aligned_cols=353 Identities=18% Similarity=0.146 Sum_probs=243.9
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh-cccccccccceEeeeC-CceEEEcCCCcH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS-GHWAHYSENMFSFDVE-NETYALKPMNCP 119 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s-g~~~~~~~e~y~~~d~-~~~~~LrP~~t~ 119 (426)
+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.++ |+ .+.++||+|.|+ |+.++||||.|+
T Consensus 30 ~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~--~~~~~my~f~D~~g~~l~LRpd~T~ 107 (456)
T 3lc0_A 30 EPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGE--EITEQMFNFITKGGHRVALRPEMTP 107 (456)
T ss_dssp SCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC--HHHHTCEEEECSSSCEEEECSCSHH
T ss_pred cCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhcccccc--chhhceEEEEcCCCCEEecCCcCHH
Confidence 56899999999999999999999999999999999999999999999865 65 367899999998 899999999999
Q ss_pred HHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC-
Q psy10612 120 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF- 197 (426)
Q Consensus 120 ~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi- 197 (426)
|++|+++++.. +.++|+|+||+|+|||+|+++. +|+|||+|+|+|+||.++ .+|+|++.++ .++|+.||+
T Consensus 108 ~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e~~~~----gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~---~~~l~~lgl~ 179 (456)
T 3lc0_A 108 SLARLLLGKGR-SLLLPAKWYSIPQCWRYEAITR----GRRREHYQWNMDIVGVKSVSAEVELVCAA---CWAMRSLGLS 179 (456)
T ss_dssp HHHHHHHHSCT-TCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHHHHHHHHH---HHHHHHTTCC
T ss_pred HHHHHHHhcCc-ccCCCEEEEEeccEEecCCCCC----CCccceEEEEEEEEcCCChHhhHHHHHHH---HHHHHHcCCC
Confidence 99999987643 5678999999999999999987 899999999999999988 8999987664 999999999
Q ss_pred -e-EEEEEecCCC-----ccCCCchhHHHH------------HHHHHHhhccCCCCceeCCCCCcc----ccCccceeee
Q psy10612 198 -T-FNLRLSTRPE-----KYLGELEVWNKA------------EKQLEASLNSFGEPWTENPGDGAF----YGPKIDITIT 254 (426)
Q Consensus 198 -~-~~i~~~~~~~-----~~~G~~~~~~~~------------~~~l~~~l~~~~~~~~~~~~~~~~----~~p~~~~~~~ 254 (426)
+ +.+.+|++.. ..+|.++..... .+.+.+.|...+.+-...+....+ ..|++...+.
T Consensus 180 ~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~ 259 (456)
T 3lc0_A 180 SKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVG 259 (456)
T ss_dssp TTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHC
T ss_pred CCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHh
Confidence 4 9999998631 123443321100 111222222111110000000000 0000000000
Q ss_pred cccCCceee-eee-e-e-eecCC--eEEeEEEeCCCCccccCEEE--e----------------------c----cccc-
Q psy10612 255 DALKRPHQC-ATI-Q-L-DFQLP--IRFNLAYVNEKGEKNRPVMI--H----------------------R----AILG- 299 (426)
Q Consensus 255 ~~~~~~~~~-~~~-~-l-~~~~~--~~~~~~~~~~~~~y~~~v~~--~----------------------~----~~~G- 299 (426)
+. ...+.. ..+ . + .+.++ ..+|++.+++.+|||++|+- . . ..+|
T Consensus 260 ~~-~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~PavGF 338 (456)
T 3lc0_A 260 EE-HEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIPCAGF 338 (456)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCCEEEE
T ss_pred HH-HHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCCEEEE
Confidence 00 000000 000 0 0 12222 34667777777777777731 0 0 0112
Q ss_pred --chHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEE
Q psy10612 300 --SVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFI 377 (426)
Q Consensus 300 --gleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~ 377 (426)
|+|||+.+|.+. + ..|....+.+|+|++.+++...+|.++++.||++|++|++++ .+.++++|+++|++.|+||+
T Consensus 339 aig~eRl~~~l~~~-~-~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~-~~~slkkq~k~A~k~ga~~v 415 (456)
T 3lc0_A 339 GFGDCVIVELLQEK-R-LLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIIL-DKKKVVQAFNYADRVGAVRA 415 (456)
T ss_dssp EEESSHHHHHHHHT-T-CCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECC-SCCCHHHHHHHHHHTTEEEE
T ss_pred EeEHHHHHHHHHhc-C-CCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEec-CCCCHHHHHHHHHHcCCCEE
Confidence 599999988653 3 233323457899999998888999999999999999999998 47899999999999999999
Q ss_pred EEEecCccCCCeEEEEEccCCeeeeecHHHH
Q psy10612 378 MVVGEKEKSSNTVNVRTRDNIVHGEFSVDDV 408 (426)
Q Consensus 378 iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el 408 (426)
||||++|+++|+|+|||+.|++|.++++++.
T Consensus 416 viiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 416 VLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp EEECHHHHHTTEEEEEECC------------
T ss_pred EEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 9999999999999999999999999988764
No 24
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=9.2e-50 Score=405.93 Aligned_cols=360 Identities=11% Similarity=0.012 Sum_probs=270.7
Q ss_pred ChhHHHHHHhcCCccccc-C------CCcce-eeccchHHHHHHHHHHHHHHH--HHcCCeEeecccccchhhHhHh--c
Q psy10612 25 VLWNRKIGREQELFFFHE-L------SPGSC-FFQTKGAFIYNTLVEFIRSEY--RKRGFQEVVSPNVYNVKLWQTS--G 92 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~-~------~~G~~-~~lP~~~~~~~~i~~~i~~~~--~~~G~~~i~tP~l~~~~l~~~s--g 92 (426)
-..+.+|++++|+++... + .+|++ +|+|.|+.++++|+++|++.+ .+.|+.+|+||++.+.++|..+ |
T Consensus 24 ~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g 103 (454)
T 1g5h_A 24 REALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAF 103 (454)
T ss_dssp -CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCC
T ss_pred HHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccC
Confidence 456899999999876642 2 14767 999999999999999888885 5899999999999999999877 7
Q ss_pred c---ccccccc----------ceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcC-CCCceeeeeccccc---cCCCCC
Q psy10612 93 H---WAHYSEN----------MFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWR-ELPLRMADFGVLHR---NELSGA 153 (426)
Q Consensus 93 ~---~~~~~~e----------~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~-~lP~k~~~~g~~fR---~E~~~~ 153 (426)
+ ++.+.++ |+.+..+ ++.++|||++|+.++..|.+...+++ +||++++|+|+||| ||.++
T Consensus 104 ~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~- 182 (454)
T 1g5h_A 104 RLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQT- 182 (454)
T ss_dssp EEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC------
T ss_pred cccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccC-
Confidence 7 8887665 4433111 46799999999999999998877777 99999999999999 69988
Q ss_pred CCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe-EEEEEecCCCccCCCchhHHHHHHHHHHhhccCC
Q psy10612 154 LTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFG 232 (426)
Q Consensus 154 ~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 232 (426)
+.||.|+|||+|.|+|+|+.++++..++..++..+.++++.||++ ..+.... .|+.. ......
T Consensus 183 ~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~----------~~~~~------a~~~~~ 246 (454)
T 1g5h_A 183 PSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSAD----------CQDEL------GRKGSK 246 (454)
T ss_dssp ----CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEE----------EECTT------SCEEEE
T ss_pred CCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecC----------CHHHH------HhcCCC
Confidence 799999999999999999998888888888888999999999996 3333211 11100 011111
Q ss_pred CCceeCCCCCccccCccceeeecccCCceeeeeeeeeec-----CCeEEeEEEeCCCCccccCEEEecccccchHHHHHH
Q psy10612 233 EPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQ-----LPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAI 307 (426)
Q Consensus 233 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~ 307 (426)
+++....+..++++ +.+. .++. -+.+|+++|.++...+ .|++++. ++| ++|++++
T Consensus 247 ie~~~p~g~~e~~g----------------~~~~-td~~l~~~~~~s~~~l~y~d~~~~~-~P~vi~~-s~G-v~R~i~a 306 (454)
T 1g5h_A 247 LYYSFPWGKEPIET----------------LWNL-GDQELLHTYPGNVSTIQGRDGRKNV-VPCVLSV-SGD-VDLGTLA 306 (454)
T ss_dssp EEEEETTEEEEEEE----------------EEEE-ESHHHHHHSTTCGGGSCEEETTEEE-CCEEEEE-EEE-HHHHHHH
T ss_pred cEEecCCCceEEEE----------------ecCC-CHHHHHhccCCceeeEEEECCCCcE-eeEEEeC-ccc-HHHHHHH
Confidence 12222111111111 0000 0111 1345788888753233 4776654 565 9999876
Q ss_pred HHHhc-----------------CCCCCCCCCCceEEEE-eCC--CChHHHHHHHHHHHHHCCCeEE--EcCCC-CCCHHH
Q psy10612 308 LTESY-----------------AGKWPFWISPRQGIVI-PVA--EPFNEYADQVKNKIFAAGFMCD--ADLDS-SDTLNK 364 (426)
Q Consensus 308 l~e~~-----------------g~~~p~~~ap~~V~Vi-~~~--~~~~~~a~~ia~~Lr~~Gi~v~--~d~~~-~~~lgk 364 (426)
+++++ ++.||+++||+||+|+ +.+ ++..++|.+|+++||++|++|+ +|+ + +.++|+
T Consensus 307 ile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Dd-r~~~sigk 385 (454)
T 1g5h_A 307 YLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSE-TVHSSLEQ 385 (454)
T ss_dssp HHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGS-CCCSCHHH
T ss_pred HHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecC-CCCCCHHH
Confidence 66542 1489999999999999 776 5678999999999999999996 887 4 789999
Q ss_pred HHHHHHHhCCcEEEEEecCccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhcccc
Q psy10612 365 KIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLK 422 (426)
Q Consensus 365 k~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~~~ 422 (426)
||++|+++|+||+||||++|+++|+|+||+|++++|..++++++++.|++.++..+..
T Consensus 386 k~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~~~~~ 443 (454)
T 1g5h_A 386 LHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASNV 443 (454)
T ss_dssp HHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhccchh
Confidence 9999999999999999999999999999999999999999999999999888766544
No 25
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-47 Score=381.00 Aligned_cols=341 Identities=12% Similarity=0.030 Sum_probs=253.1
Q ss_pred hHHHHHHhcCCccccc--C-----CCcce-eeccchHHHHHHHHHHHHHHHH-HcC-CeEeecccccchhhHhHhccccc
Q psy10612 27 WNRKIGREQELFFFHE--L-----SPGSC-FFQTKGAFIYNTLVEFIRSEYR-KRG-FQEVVSPNVYNVKLWQTSGHWAH 96 (426)
Q Consensus 27 ~h~~l~~~~~l~~~~~--~-----~~G~~-~~lP~~~~~~~~i~~~i~~~~~-~~G-~~~i~tP~l~~~~l~~~sg~~~~ 96 (426)
.-..|++++.++.... . ..|.+ +|+|.|+.+++.|++.|++.+. +.| +.+|+||. .++|..||||+.
T Consensus 68 ~l~~~~~rr~f~~~~~~~~~~~~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~ 144 (459)
T 3ikl_A 68 ALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSA 144 (459)
T ss_dssp SHHHHHHHTTSBCSCTTTTCHHHHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSC
T ss_pred HHHHHHHhcCcccccchhcccCCCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhh
Confidence 3467888865443321 1 35666 9999999999999986666554 366 77799999 666999999998
Q ss_pred ccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcC-CCCceeeeeccccccCC--CCCCCCCccceeEeEcCeeEecC
Q psy10612 97 YSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR-ELPLRMADFGVLHRNEL--SGALTGLTRVRRFQQDDAHIFCT 173 (426)
Q Consensus 97 ~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~-~lP~k~~~~g~~fR~E~--~~~~~Gl~R~REF~q~d~~~fg~ 173 (426)
|. ++|||++++.+...|.+...+++ +||++++|+|+|||+|. .+.++||.|+|||+|.|+++|+.
T Consensus 145 ~~------------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~ 212 (459)
T 3ikl_A 145 FR------------GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTP 212 (459)
T ss_dssp CT------------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEEC
T ss_pred hc------------ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeC
Confidence 85 78999999999999999888887 99999999999999995 23378999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCe---EEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccc
Q psy10612 174 VEQIGDEIVGALDFLRNVYSIFGFT---FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKID 250 (426)
Q Consensus 174 ~~~~~~e~~~~~~~~~~il~~lgi~---~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~ 250 (426)
|+++++++..++..+..+++.|||+ +++.--. +.. .+....+++....|...++++
T Consensus 213 Pe~~~e~~~~~~~~~~~~~~~LGi~~~~~r~~~~~-~ee-----------------A~~~~DiE~~~p~G~~E~~g~--- 271 (459)
T 3ikl_A 213 PRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQ-DEE-----------------GRKGNKLYYNFPWGKELIETL--- 271 (459)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHCSSGGGEEEEEEC-CSS-----------------SSCEEEEEEECSSCEEEEEEE---
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCChhhEEEeecC-chH-----------------HHhhcCeEEEcCCceEEEeee---
Confidence 9998999988888999999999996 5444211 000 011111112122221112111
Q ss_pred eeeecccCCceeeeeeeeeecCC---eEEeEEEeCCCC--ccccCEEEecccccchHHHHHHHHHh-c---C--------
Q psy10612 251 ITITDALKRPHQCATIQLDFQLP---IRFNLAYVNEKG--EKNRPVMIHRAILGSVERMVAILTES-Y---A-------- 313 (426)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~--~y~~~v~~~~~~~GgleRll~~l~e~-~---g-------- 313 (426)
+.+ .||++. ..+++++.+.++ .| .|+++ ++++| ++|++.+++++ + +
T Consensus 272 ----------sn~----tDfqL~~~~~~~~~~~~~~dg~~k~-~P~vi-~~s~G-v~R~~~AiLe~~~de~~~~~~~~~~ 334 (459)
T 3ikl_A 272 ----------WNL----GDHELLHMYPGNVSKLHGRDGRKNV-VPCVL-SVNGD-LDRGMLAYLYDSFQLTENSFTRKKN 334 (459)
T ss_dssp ----------EEE----ETHHHHHHSCSCSSSSCCBSSSCBC-CCEEE-EEEEE-HHHHHHHHHHTTCC-----------
T ss_pred ----------ecc----chhhhhccccccCceeEccCCCeee-eeEEE-Eeccc-HHHHHHHHHHHHhhhcccccccccc
Confidence 001 122221 122333333333 23 35555 57776 99998888776 2 3
Q ss_pred -----CCCCCCCCCceEEEEeCC---CChHHHHHHHHHHHHHCCCeEE--EcCCC-CCCHHHHHHHHHHhCCcEEEEEec
Q psy10612 314 -----GKWPFWISPRQGIVIPVA---EPFNEYADQVKNKIFAAGFMCD--ADLDS-SDTLNKKIRNAQISQYNFIMVVGE 382 (426)
Q Consensus 314 -----~~~p~~~ap~~V~Vi~~~---~~~~~~a~~ia~~Lr~~Gi~v~--~d~~~-~~~lgkk~~~A~~~gip~~iiiG~ 382 (426)
+.||+|+||+||+|++.. ++..++|.+|+++|+++||+|+ +|+ + +.++|+||++|+++|+||+||||+
T Consensus 335 ~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Dd-r~~~siGkK~r~Ad~iGiPy~IiVG~ 413 (459)
T 3ikl_A 335 LHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLE-TMQSSLEQLYSKYDEMSILFTVLVTE 413 (459)
T ss_dssp --CCCCCCCTTTCSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGS-SSCCTTHHHHHHHGGGTCSEEEEECT
T ss_pred ccceEEEeCcccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecC-CcCCCHHHHHHHHHHcCCCEEEEECc
Confidence 899999999999999442 5688999999999999999999 777 5 689999999999999999999999
Q ss_pred CccCCCeEEEEEccCCeeeeecHHHHHHHHHHHHhhccc
Q psy10612 383 KEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTL 421 (426)
Q Consensus 383 ~E~~~~~v~vk~~~~~~q~~v~~~el~~~i~~~~~~~~~ 421 (426)
+|+++|+|+||+|+|++|..|+++++++.|++.+++-.|
T Consensus 414 kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~~~~ 452 (459)
T 3ikl_A 414 TTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKN 452 (459)
T ss_dssp TSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHHHHH
T ss_pred hhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999988776543
No 26
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=1.9e-41 Score=342.05 Aligned_cols=288 Identities=19% Similarity=0.281 Sum_probs=224.3
Q ss_pred ccccCCCCCCCCC---------CCCC-ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcC
Q psy10612 8 LVLPECGDSNRMM---------PISF-VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRG 73 (426)
Q Consensus 8 ~~~~~~~~~~~~~---------~~~~-~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G 73 (426)
+.+|+++|++++. .++| ..+|++|++++|+|++.. .++|+++|+|.|++++++|++++++.+.++|
T Consensus 111 ~~vp~g~~e~~n~~~~~~g~~~~~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~G 190 (425)
T 2dq3_A 111 PSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKG 190 (425)
T ss_dssp TTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCccCcEEEEEeCCCCCCCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHHHHcC
Confidence 4578888876532 2333 459999999999998754 4899999999999999999999999999999
Q ss_pred CeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC-
Q psy10612 74 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG- 152 (426)
Q Consensus 74 ~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~- 152 (426)
|++|.||+|++.++|.++||++.|.++||++. ++.++||||+|+++++++++.+.++++||+|++|+|+|||+|.++
T Consensus 191 y~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~ 268 (425)
T 2dq3_A 191 YKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAY 268 (425)
T ss_dssp CEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCC
T ss_pred CEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcc
Confidence 99999999999999999999999999999986 468999999999999999999889999999999999999999965
Q ss_pred --CCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEE-EEEecCCCccCCCchhHHHHHHHHHHhhc
Q psy10612 153 --ALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFN-LRLSTRPEKYLGELEVWNKAEKQLEASLN 229 (426)
Q Consensus 153 --~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~-i~~~~~~~~~~G~~~~~~~~~~~l~~~l~ 229 (426)
.++||.|+|||+|.|+++|+.++++++++..++.++.++|+.|||+|+ +.+++ +.+|.....
T Consensus 269 Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~---gdlg~~a~~------------ 333 (425)
T 2dq3_A 269 GKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCT---GDLGFSAAK------------ 333 (425)
T ss_dssp SSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCT---TTCCTTCSE------------
T ss_pred cccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecC---CcCCChHHh------------
Confidence 378999999999999999999988898888889999999999999987 44444 334432210
Q ss_pred cCCCCceeCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCCCCccccCE-EEecccccchHHHHHHH
Q psy10612 230 SFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPV-MIHRAILGSVERMVAIL 308 (426)
Q Consensus 230 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v-~~~~~~~GgleRll~~l 308 (426)
..+++. +-|.- .......+|++. .||+ +.+++++|.+.+|.....+ .+.++++| ++|++++|
T Consensus 334 --~~diE~-------w~p~~-----~~~~ei~s~sn~-~Dfq-a~r~~i~y~~~~~~k~~~vHtl~Gs~~a-v~R~i~al 396 (425)
T 2dq3_A 334 --TYDIEV-------WFPSQ-----NKYREISSCSNC-EDFQ-ARRMNTRFKDSKTGKNRFVHTLNGSGLA-VGRTLAAI 396 (425)
T ss_dssp --EEEEEE-------EEGGG-----TEEEEEEEEEEC-TTHH-HHHHTEEEECTTTCSEEECEEEEEEEEE-HHHHHHHH
T ss_pred --ccchhh-------ccchh-----HHHHHHHHcCCc-cccC-cccCCeEEECCCCCeeEEEEEEeccccH-HHHHHHHH
Confidence 000000 00100 001111344444 3666 7889999998764222222 22223343 99999999
Q ss_pred HHhcC-----CCCCCCCCCce-EEEEe
Q psy10612 309 TESYA-----GKWPFWISPRQ-GIVIP 329 (426)
Q Consensus 309 ~e~~g-----~~~p~~~ap~~-V~Vi~ 329 (426)
+|+++ +.||++++|++ +-+|+
T Consensus 397 lE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 397 LENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp HHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred HHhCCCCCCCEecCccccCccCcccCC
Confidence 99874 58999999999 65654
No 27
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=8e-41 Score=339.36 Aligned_cols=265 Identities=11% Similarity=0.143 Sum_probs=213.5
Q ss_pred ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhccccccccc
Q psy10612 25 VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 100 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e 100 (426)
..+|++||+++|||++.. .++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.++|+++.|.++
T Consensus 159 ~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~e 238 (455)
T 2dq0_A 159 PKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDV 238 (455)
T ss_dssp CCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHT
T ss_pred cCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHh
Confidence 468999999999998752 5799999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC---CCCCCccceeEeEcCeeEecCccch
Q psy10612 101 MFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTVEQI 177 (426)
Q Consensus 101 ~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~---~~~Gl~R~REF~q~d~~~fg~~~~~ 177 (426)
||++.| ++++||||+|++++++++++..++++||+|++++|+|||+|.++ .++||.|+|||+|.|+++|+.++++
T Consensus 239 my~~~d--~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s 316 (455)
T 2dq0_A 239 IYKVED--EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEES 316 (455)
T ss_dssp CCBBTT--SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTH
T ss_pred hCeecC--CcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHH
Confidence 999974 68999999999999999999889999999999999999999975 2589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCceeCCCCCccccCccceeeeccc
Q psy10612 178 GDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL 257 (426)
Q Consensus 178 ~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 257 (426)
++++..+++++.++|+.|||+|++...+. +.+|..... . .+++. ..+..
T Consensus 317 ~~~~~e~l~~~~~il~~LGL~yrv~~~~~--gdlg~~a~~------------~--~diE~---------------w~p~~ 365 (455)
T 2dq0_A 317 WEWHEKIIRNAEELFQELEIPYRVVNICT--GDLGYVAAK------------K--YDIEA---------------WMPGQ 365 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECCG--GGSCSSCSE------------E--EEEEE---------------EETTT
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEECCC--ccccChhhc------------e--eeeee---------------ecCcC
Confidence 99999999999999999999988776443 334432210 0 01110 00111
Q ss_pred CCceeeeeee--eeecCCeEEeEEEeCC-CCccccCEEEecccccchHHHHHHHHHhcC-----CCCCCCCCCce
Q psy10612 258 KRPHQCATIQ--LDFQLPIRFNLAYVNE-KGEKNRPVMIHRAILGSVERMVAILTESYA-----GKWPFWISPRQ 324 (426)
Q Consensus 258 ~~~~~~~~~~--l~~~~~~~~~~~~~~~-~~~y~~~v~~~~~~~GgleRll~~l~e~~g-----~~~p~~~ap~~ 324 (426)
++..+++... .||+ +.+++++|.+. +|...-+..+.++++| ++|++++|+|+++ +.||+|++|++
T Consensus 366 ~~~~ei~s~s~c~Dfq-arR~~iry~~~~~g~~~~vHtlngs~la-v~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 366 GKFREVVSASNCTDWQ-ARRLNIRFRDRTDEKPRYVHTLNSTAIA-TSRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp TEEEEEEEEEECTTTT-HHHHTEEEESSTTSCCEECEEEEEEEEE-HHHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred CcccEEEeeccchhhH-hhccCcEEecCCCCcEEEEEEEechHhH-HHHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 1222222111 2454 67899999986 5542212233456676 9999999999974 58999999998
No 28
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=7.1e-41 Score=337.23 Aligned_cols=279 Identities=19% Similarity=0.285 Sum_probs=219.5
Q ss_pred ccccCCCCCCCCC---------CCCC-ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcC
Q psy10612 8 LVLPECGDSNRMM---------PISF-VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRG 73 (426)
Q Consensus 8 ~~~~~~~~~~~~~---------~~~~-~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G 73 (426)
+-+|++ |++++. .+++ ..+|++|++++|+|+ .. .++|+++|+|.|++++++|++++++.+.++|
T Consensus 107 ~~vp~g-~e~~n~~~~~~g~~~~~~~~~~~H~~lg~~l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~G 184 (421)
T 1ses_A 107 PGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRG 184 (421)
T ss_dssp TTSCSS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCC-CccccEEEEEeCCCCccCCCCCCHHHHHHHcCccc-cccccccCCCeEEECcHHHHHHHHHHHHHHHHHHHcC
Confidence 456888 766543 2222 468999999999998 54 4799999999999999999999999999999
Q ss_pred CeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCC---
Q psy10612 74 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNEL--- 150 (426)
Q Consensus 74 ~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~--- 150 (426)
|++|.||+|++.++|.++||++.|.++||+++| ++++|+||+|++++++++++..++++||+|+||+|+|||+|.
T Consensus 185 y~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d--~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~ 262 (421)
T 1ses_A 185 FLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSF 262 (421)
T ss_dssp CEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT--SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCC
T ss_pred CEEEeCCceecHHHHHhcCCCCcCchhcEEEcC--CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCcccc
Confidence 999999999999999999999999999999974 689999999999999999998899999999999999999997
Q ss_pred -CCCCCCCccceeEeEcCeeEecCc--cchHHHHHHHHHHHHHHHHHcCCeEEEE-EecCCCccCCCchhHHHHHHHHHH
Q psy10612 151 -SGALTGLTRVRRFQQDDAHIFCTV--EQIGDEIVGALDFLRNVYSIFGFTFNLR-LSTRPEKYLGELEVWNKAEKQLEA 226 (426)
Q Consensus 151 -~~~~~Gl~R~REF~q~d~~~fg~~--~~~~~e~~~~~~~~~~il~~lgi~~~i~-~~~~~~~~~G~~~~~~~~~~~l~~ 226 (426)
++ ++||.|+|||+|.|+++|+.+ +++++++..+++++.++|+.|||+|++. +++ +.+|.....
T Consensus 263 Gr~-~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~t---~dlg~~a~~--------- 329 (421)
T 1ses_A 263 GKD-VRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVAT---GDMGPGKWR--------- 329 (421)
T ss_dssp CSC-CCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCH---HHHCTTCSE---------
T ss_pred CcC-CCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecC---ccCCchhhh---------
Confidence 44 689999999999999999999 6899999999999999999999998753 333 334432210
Q ss_pred hhccCCCCcee-CCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHH
Q psy10612 227 SLNSFGEPWTE-NPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMV 305 (426)
Q Consensus 227 ~l~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll 305 (426)
..+++. .++... ....++|++. .||+ +.+++++|.+.+|.......+.++++| ++|++
T Consensus 330 -----~~DiE~w~p~~~~-------------~~ei~s~s~~-~Dfq-arr~~i~y~~~~~~~~~vhtlngs~la-v~R~l 388 (421)
T 1ses_A 330 -----QVDIEVYLPSEGR-------------YRETHSCSAL-LDWQ-ARRANLRYRDPEGRVRYAYTLNNTALA-TPRIL 388 (421)
T ss_dssp -----EEEEEEEETTTTE-------------EEEEEEEEEE-ETHH-HHHHTCEEECTTSCEEECEEEEEEEEE-ETHHH
T ss_pred -----cccHhheechhcc-------------chheeecccc-chhh-hhhhcCEeECCCCCEEEEEecCCccch-HHHHH
Confidence 001110 111110 0111445554 4666 678899998765531111133456665 99999
Q ss_pred HHHHHhc----C-CCCCCCCCCce
Q psy10612 306 AILTESY----A-GKWPFWISPRQ 324 (426)
Q Consensus 306 ~~l~e~~----g-~~~p~~~ap~~ 324 (426)
++|+|++ | +.||++++||.
T Consensus 389 ~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 389 AMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp HHHHHHHBCTTSCEECCGGGHHHH
T ss_pred HHHHHhCCCCCCCEecChhcCCcc
Confidence 9999985 4 78999999986
No 29
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=7.9e-40 Score=332.78 Aligned_cols=293 Identities=14% Similarity=0.214 Sum_probs=224.1
Q ss_pred ccccCCCCCC-CCC-------CCC-CChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcCC
Q psy10612 8 LVLPECGDSN-RMM-------PIS-FVLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGF 74 (426)
Q Consensus 8 ~~~~~~~~~~-~~~-------~~~-~~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~ 74 (426)
+-||+++|+. ++. +.. ...+|++||+++|||++.. .++|++.|+|.|++++++|++++++.+.++||
T Consensus 141 ~~vP~g~~e~~dn~~vr~~g~~~~~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy 220 (522)
T 3vbb_A 141 PSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGY 220 (522)
T ss_dssp TTSCCCSCHHHHCEEEEEESCSSCCCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCcEEEEEeCCCCCCCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578888876 432 112 2569999999999998864 37999999999999999999999999999999
Q ss_pred eEeecccccchhhHhHhcccccccccceEeeeC---------CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccc
Q psy10612 75 QEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 145 (426)
Q Consensus 75 ~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~---------~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~ 145 (426)
++|.||.|.+.++|..+|||+.|.++||++.++ +++++|+||+|+|++.++++.+.++++||+|++++|+|
T Consensus 221 ~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~c 300 (522)
T 3vbb_A 221 IPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300 (522)
T ss_dssp EEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEE
T ss_pred EEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEeccc
Confidence 999999999999999999999999999999864 46899999999999999999999999999999999999
Q ss_pred cccCCCC---CCCCCccceeEeEcCeeEecCccc--hHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHH
Q psy10612 146 HRNELSG---ALTGLTRVRRFQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKA 220 (426)
Q Consensus 146 fR~E~~~---~~~Gl~R~REF~q~d~~~fg~~~~--~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~ 220 (426)
||+|.++ .++||.|+|||+|.|+++|+.+++ +++++..+++++.++|+.|||+|+++.... +.+|.....
T Consensus 301 FR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~t--gdlg~~ask--- 375 (522)
T 3vbb_A 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVS--GSLNHAASK--- 375 (522)
T ss_dssp ECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCG--GGCCTTCSE---
T ss_pred ccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCC--ccCCCchhh---
Confidence 9999963 379999999999999999999986 999999999999999999999987765321 345543210
Q ss_pred HHHHHHhhccCCCCce-eCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCC---CCccccCEEEecc
Q psy10612 221 EKQLEASLNSFGEPWT-ENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNE---KGEKNRPVMIHRA 296 (426)
Q Consensus 221 ~~~l~~~l~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~y~~~v~~~~~ 296 (426)
. .+++ +.++...+ .+ + .+|++. .||+ +.+++++|.+. .+...-+.++.++
T Consensus 376 ---------t--yDiE~w~P~~~~y----~E--I-------sScSnc-~Dyq-Arr~~iry~~~~~~~~k~~~vhtlNgs 429 (522)
T 3vbb_A 376 ---------K--LDLEAWFPGSGAF----RE--L-------VSCSNC-TDYQ-ARRLRIRYGQTKKMMDKVEFVHMLNAT 429 (522)
T ss_dssp ---------E--EEEEEEETTTTEE----EE--E-------EEEEEC-TTHH-HHHHTCEESCC---CCCCCBCEEEEEE
T ss_pred ---------e--eceeEecCCCCce----eE--E-------EEecCC-CCCc-cceeeeEEccccccCCCeeeceEEecc
Confidence 0 1111 11111110 00 1 112221 1333 45667777643 3322222345556
Q ss_pred cccchHHHHHHHHHhc----CCCCCCCCCCceE----EEEeCCC
Q psy10612 297 ILGSVERMVAILTESY----AGKWPFWISPRQG----IVIPVAE 332 (426)
Q Consensus 297 ~~GgleRll~~l~e~~----g~~~p~~~ap~~V----~Vi~~~~ 332 (426)
+++ ++|++.+|+|++ |+.+|+.++||.. .|+|+..
T Consensus 430 ~la-v~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~ 472 (522)
T 3vbb_A 430 MCA-TTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVK 472 (522)
T ss_dssp EEE-HHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCS
T ss_pred chH-HHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCC
Confidence 676 999999999975 6789999999987 7999875
No 30
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=2e-39 Score=330.98 Aligned_cols=271 Identities=21% Similarity=0.253 Sum_probs=217.0
Q ss_pred ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccc-
Q psy10612 25 VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSE- 99 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~- 99 (426)
..+|++|++++|+|++.. .++|++.|+|.|++++++|++++++.+.++||++|.||.|.+.++|.++|+|+.|.+
T Consensus 185 ~~dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~ 264 (501)
T 1wle_A 185 PRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPS 264 (501)
T ss_dssp CCCHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSC
T ss_pred CCCHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCcc
Confidence 479999999999998753 369999999999999999999999999999999999999999999999999999998
Q ss_pred cceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC--CCCCCccceeEeEcCeeEecCcc-
Q psy10612 100 NMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG--ALTGLTRVRRFQQDDAHIFCTVE- 175 (426)
Q Consensus 100 e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~--~~~Gl~R~REF~q~d~~~fg~~~- 175 (426)
+||++.++ +++++|+||+|++++.++++++.++++||+|++++|+|||+|.+. .++||.|+|||+|.|+++|+.++
T Consensus 265 emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~ 344 (501)
T 1wle_A 265 QIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGL 344 (501)
T ss_dssp SSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSH
T ss_pred ccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcH
Confidence 99999876 678999999999999999999999999999999999999999871 17899999999999999999994
Q ss_pred -chHHHHHHHHHHHHHHHHHcCCeEEEEE-ecCCCccCCCchhHHHHHHHHHHhhccCCCCce-eCCCCCccccCcccee
Q psy10612 176 -QIGDEIVGALDFLRNVYSIFGFTFNLRL-STRPEKYLGELEVWNKAEKQLEASLNSFGEPWT-ENPGDGAFYGPKIDIT 252 (426)
Q Consensus 176 -~~~~e~~~~~~~~~~il~~lgi~~~i~~-~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~p~~~~~ 252 (426)
++++++..+++.+.++|+.|||+|+++. ++ +.+|..... ..+++ +.++...+
T Consensus 345 e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~t---gdlg~~a~~--------------~~DiE~w~p~~~~~-------- 399 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTELGLHFRVLDMPT---QELGLPAYR--------------KFDIEAWMPGRGRF-------- 399 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEECCG---GGSTTTCSE--------------EEEEEEEETTTTEE--------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEccC---cccCCchhh--------------eecHhhcccccccc--------
Confidence 8999999999999999999999987654 33 345433210 00111 11111110
Q ss_pred eecccCCceeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHHHHHHHhc----C-CCCCCCCCCce-EE
Q psy10612 253 ITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY----A-GKWPFWISPRQ-GI 326 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll~~l~e~~----g-~~~p~~~ap~~-V~ 326 (426)
....+|++. .||+ +.+++++|.+.+|....+.+++++++| ++|++++|+|++ | +.||++++||. +-
T Consensus 400 -----~Ei~s~sn~-~Dfq-arR~~iry~~~~gk~~~vHtlngSgla-v~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~ 471 (501)
T 1wle_A 400 -----GEVTSASNC-TDFQ-SRRLHIMFQTEAGELQFAHTVNATGCA-VPRLLIALLESYQQKDGSVLVPPALQPYLGTD 471 (501)
T ss_dssp -----EEEEEEEEC-TTHH-HHHHTCEEECSSSCEEECEEEEEEEEE-HHHHHHHHHHHHBCTTSCEECCGGGHHHHSSS
T ss_pred -----eeEEecccc-ccch-hhhcCcEEECCCCCEEEEEEECCccch-HHHHHHHHHHhCCCCCCCEeCChhhcCccCcc
Confidence 001223322 3554 678899998876543223344566666 999999999986 4 68999999997 44
Q ss_pred EE
Q psy10612 327 VI 328 (426)
Q Consensus 327 Vi 328 (426)
+|
T Consensus 472 ~i 473 (501)
T 1wle_A 472 RI 473 (501)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 31
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=3.5e-39 Score=326.22 Aligned_cols=294 Identities=15% Similarity=0.173 Sum_probs=226.2
Q ss_pred ccccCCCCCCC-CC-------CCCC-ChhHHHHHHhcCCcccc----c-CCCcceeeccchHHHHHHHHHHHHHHHHHcC
Q psy10612 8 LVLPECGDSNR-MM-------PISF-VLWNRKIGREQELFFFH----E-LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRG 73 (426)
Q Consensus 8 ~~~~~~~~~~~-~~-------~~~~-~~~h~~l~~~~~l~~~~----~-~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G 73 (426)
+-+|++.|+.+ +. +..+ ..+|++||+++|||++. + .++|++.|+|.|+++.++|++++++.+.++|
T Consensus 147 ~~vP~g~~e~~~n~~v~~~g~~~~~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~G 226 (484)
T 3lss_A 147 ESVPIAQDEETGNTVVRTFGNTTKRAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRG 226 (484)
T ss_dssp TTSCCCSCHHHHCEEEEEESCTTCCCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCCCcccCcEEEEecCCCCCCCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcC
Confidence 45788887644 21 1122 67999999999999885 2 4789999999999999999999999999999
Q ss_pred CeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC-
Q psy10612 74 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG- 152 (426)
Q Consensus 74 ~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~- 152 (426)
|++|.||.|.+.++|..+|||+.|.++||++.+++++++|+||+|+|++.++++.+.++++||+|++++|+|||+|.++
T Consensus 227 y~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~ 306 (484)
T 3lss_A 227 YTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAH 306 (484)
T ss_dssp CEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCS
T ss_pred CEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcC
Confidence 9999999999999999999999999999999887789999999999999999999999999999999999999999853
Q ss_pred --CCCCCccceeEeEcCeeEecCccc--hHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhh
Q psy10612 153 --ALTGLTRVRRFQQDDAHIFCTVEQ--IGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASL 228 (426)
Q Consensus 153 --~~~Gl~R~REF~q~d~~~fg~~~~--~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l 228 (426)
.++||.|+|||+|.|+++|+.+++ +++++..+++++.++|+.|||+|+++.... +.+|.....
T Consensus 307 Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~t--gdlg~~a~~----------- 373 (484)
T 3lss_A 307 GRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICS--GALNNAAAK----------- 373 (484)
T ss_dssp SSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCT--TTCCSSCSE-----------
T ss_pred CcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCC--cccCCchhh-----------
Confidence 258999999999999999999987 999999999999999999999987765321 345443210
Q ss_pred ccCCCCce-eCCCCCccccCccceeeecccCCceeeeeeeeeecCCeEEeEEEeCCC------CccccCEEEecccccch
Q psy10612 229 NSFGEPWT-ENPGDGAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEK------GEKNRPVMIHRAILGSV 301 (426)
Q Consensus 229 ~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~y~~~v~~~~~~~Ggl 301 (426)
. .+++ +.++...+ .+ + .+|++. .||+ +.+++++|.+.. +...-+.+++.++++ +
T Consensus 374 -~--yDiE~w~P~~~~~----~E--I-------sS~Snc-~dyq-Arr~~iry~~~~~~~~~~~~~~~vhtlNgt~~a-v 434 (484)
T 3lss_A 374 -K--YDLEAWFPASGAF----RE--L-------VSCSNC-TDYQ-SQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCA-I 434 (484)
T ss_dssp -E--EEEEEEETTTTEE----EE--E-------EEEEEC-TTHH-HHHHTCEESSCCC----CCSCEECEEEEEEEEE-H
T ss_pred -e--echheecCCCCCe----eE--E-------EEecCc-cccc-ccccceEEeccccccccCCCceeeeEEeccchH-H
Confidence 0 1111 11111110 00 1 112221 1333 455667776542 221112244556676 9
Q ss_pred HHHHHHHHHhc----CCCCCCCCCCce--EEEEeCCCC
Q psy10612 302 ERMVAILTESY----AGKWPFWISPRQ--GIVIPVAEP 333 (426)
Q Consensus 302 eRll~~l~e~~----g~~~p~~~ap~~--V~Vi~~~~~ 333 (426)
+|++.+|+|++ |+.+|+.++||. +-+||....
T Consensus 435 ~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~~ 472 (484)
T 3lss_A 435 TRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFENN 472 (484)
T ss_dssp HHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCCC
T ss_pred HHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCcc
Confidence 99999999985 578999999987 677777643
No 32
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=2.4e-38 Score=317.84 Aligned_cols=323 Identities=13% Similarity=0.068 Sum_probs=218.2
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHH
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPG 120 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~ 120 (426)
+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.++| +.+.++||+|.|+ |+.++||||.|+|
T Consensus 11 ~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~g~~l~LRpd~T~~ 88 (400)
T 3od1_A 11 EKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLRPDMTAP 88 (400)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTTSCEEEECSCSHHH
T ss_pred cCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCCCCEEEECCCCHHH
Confidence 478999999999999999999999999999999999999999999999876 5678999999998 8999999999999
Q ss_pred HHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe-
Q psy10612 121 HCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT- 198 (426)
Q Consensus 121 i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~- 198 (426)
++|++++.. .+.++|+|+||+|+|||+|+++. +|+|||+|+|+|+||.++ .+|+|++.++ .++|+.||++
T Consensus 89 ~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~~----gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~---~~~l~~lgl~~ 160 (400)
T 3od1_A 89 IARLVASSL-KDRAYPLRLAYQSNVYRAQQNEG----GKPAEFEQLGVELIGDGTASADGEVIALM---IAALKRAGLSE 160 (400)
T ss_dssp HHHHHHHHC-SSSCSCEEEEEEEEEECCCC-------CCCSEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHHTTCCS
T ss_pred HHHHHHhhc-ccCCCCeEEEEEcCEEeCCCCCC----CCCCccEEeEEEEECCCChHhHHHHHHHH---HHHHHHCCCCc
Confidence 999998764 34688999999999999999887 899999999999999988 8899987664 9999999995
Q ss_pred EEEEEecCCC-----ccCCCchhHHHHHHHHHHhhcc------------CCCCce------eCC---CCCccc--cCccc
Q psy10612 199 FNLRLSTRPE-----KYLGELEVWNKAEKQLEASLNS------------FGEPWT------ENP---GDGAFY--GPKID 250 (426)
Q Consensus 199 ~~i~~~~~~~-----~~~G~~~~~~~~~~~l~~~l~~------------~~~~~~------~~~---~~~~~~--~p~~~ 250 (426)
+.+.+||+.. ..+|.++.+ ...+..++.+ .+.+-. ..+ +..... .|++.
T Consensus 161 ~~i~l~~~~i~~~ll~~~~~~~~~---~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~ 237 (400)
T 3od1_A 161 FKVAIGHVGYVNALLMDVVGNEQR---ADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLI 237 (400)
T ss_dssp EEEEEEEHHHHHHHHHHHHCCHHH---HHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTC
T ss_pred eEEEecCHHHHHHHHHHcCCCHHH---HHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhh
Confidence 9999988620 112332211 1122222221 111100 000 000000 00000
Q ss_pred e-eeecccCCceeeeeeee-eecCC--eEEeEEEeCCCCccccCEEE------e-------cc------------ccc--
Q psy10612 251 I-TITDALKRPHQCATIQL-DFQLP--IRFNLAYVNEKGEKNRPVMI------H-------RA------------ILG-- 299 (426)
Q Consensus 251 ~-~~~~~~~~~~~~~~~~l-~~~~~--~~~~~~~~~~~~~y~~~v~~------~-------~~------------~~G-- 299 (426)
. ......-.++....-.+ .+.+. ..+|++++++.+|||++|+- + ++ .+|
T Consensus 238 ~~~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~~~pavGfa 317 (400)
T 3od1_A 238 QTEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHRPAQATGFG 317 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTCCCCEEEEE
T ss_pred cChhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECCCCCeeecccccchhhhccCCCCCEEEEE
Confidence 0 00000000000000000 12222 45778888888888888741 0 00 111
Q ss_pred -chHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHhCCcEEE
Q psy10612 300 -SVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIM 378 (426)
Q Consensus 300 -gleRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~~gip~~i 378 (426)
|+|||+.+|.++ + ..++ .| +|+| +.+++....|.+++++||++|++|+++. .+. .... +|...|+..++
T Consensus 318 iglerL~~~l~~~-~-~~~~--~~-~v~v-~~~~~~~~~a~~~a~~LR~~G~~v~~~~-~~~-~~~~--~~~~~~~~~~~ 387 (400)
T 3od1_A 318 VRIDLLVEALNGE-I-ISNG--HE-QTCI-LFSNERRFEAIELARKKRANGEAVVLQD-LAG-VTDV--DAMSSNYQDVI 387 (400)
T ss_dssp EEHHHHHHHHCC----------CC-CEEE-EECGGGHHHHHHHHHHHHTTTCCEEEEE-GGG-CSCH--HHHHTTSSEEE
T ss_pred eeHHHHHHHHHhc-C-CCCC--CC-eEEE-EECcHHHHHHHHHHHHHHHCCCEEEEEe-cCC-hhHH--HHHHcCCCEEE
Confidence 699999887543 2 1121 12 3665 4667778889999999999999999986 332 2212 88889999999
Q ss_pred EEecCccCC
Q psy10612 379 VVGEKEKSS 387 (426)
Q Consensus 379 iiG~~E~~~ 387 (426)
++..++-+.
T Consensus 388 ~~~~~~~~~ 396 (400)
T 3od1_A 388 YCIGTAGRG 396 (400)
T ss_dssp EECSCC---
T ss_pred EEecCCCCC
Confidence 998776543
No 33
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=1.4e-38 Score=321.59 Aligned_cols=275 Identities=14% Similarity=0.209 Sum_probs=215.2
Q ss_pred ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhccccccccc
Q psy10612 25 VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN 100 (426)
Q Consensus 25 ~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e 100 (426)
..+|++||+++|||++.. .++|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|..+|||+.|.++
T Consensus 151 ~~dH~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~ee 230 (485)
T 3qne_A 151 KLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEE 230 (485)
T ss_dssp CSCHHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTT
T ss_pred ccCHHHHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccc
Confidence 479999999999998853 4789999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeeCCceEEEcCCCcHHHHHHHhhhhcC--cCCCCceeeeeccccccCCCC---CCCCCccceeEeEcCeeEecCcc
Q psy10612 101 MFSFDVENETYALKPMNCPGHCLIFDHRVRS--WRELPLRMADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCTVE 175 (426)
Q Consensus 101 ~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~--~~~lP~k~~~~g~~fR~E~~~---~~~Gl~R~REF~q~d~~~fg~~~ 175 (426)
||++.+++++++|+||++.|++.++.+.+.+ +++||+|++++++|||+|.++ .++||.|+|||+|.|+++|+.++
T Consensus 231 mf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe 310 (485)
T 3qne_A 231 LYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPE 310 (485)
T ss_dssp CCEEEETTEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGG
T ss_pred eEEEeCCCCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHH
Confidence 9999987789999999999999999988777 999999999999999999865 37999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhhccCCCCce-eCCCCCccccCccceeee
Q psy10612 176 QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWT-ENPGDGAFYGPKIDITIT 254 (426)
Q Consensus 176 ~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~p~~~~~~~ 254 (426)
++++++..+++++.++|+.|||+|+++.... +.+|..... . .+++ +.++...+ .+ +
T Consensus 311 ~s~~e~e~ml~~~e~il~~LgLpyrvv~~~t--gdlg~~a~~------------t--yDiE~w~P~~~~~----~E--i- 367 (485)
T 3qne_A 311 KSWEEFDRMIGCSEEFYQSLGLPYRVVGIVS--GELNNAAAK------------K--YDLEAWFPFQQEY----KE--L- 367 (485)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTCCEEEEECCG--GGCCTTCSE------------E--EEEEEEETTTTEE----EE--E-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEEEcCC--cccCCchhh------------h--eeeeEeccCCCce----eE--E-
Confidence 9999999999999999999999987765321 344433210 0 1111 11111110 00 1
Q ss_pred cccCCceeeeeeeeeecCCeEEeEEEeCC---CCccccCE-EEecccccchHHHHHHHHHhc----CCCCCCCCCCceE-
Q psy10612 255 DALKRPHQCATIQLDFQLPIRFNLAYVNE---KGEKNRPV-MIHRAILGSVERMVAILTESY----AGKWPFWISPRQG- 325 (426)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~y~~~v-~~~~~~~GgleRll~~l~e~~----g~~~p~~~ap~~V- 325 (426)
..|++. .||+ +.+++++|.+. .+. ...+ ++++++++ ++|++.+|+|++ |+.+|+.++||..
T Consensus 368 ------ss~Snc-~dyq-Arr~~iry~~~~~~~~~-~~~vhtlNgt~la-v~R~l~AiLEn~q~~dGi~iP~~L~py~~g 437 (485)
T 3qne_A 368 ------VSCSNC-TDYQ-SRNLEIRCGIKQQNQQE-KKYVHCLNSTLSA-TERTICCILENYQKEDGLVIPEVLRKYIPG 437 (485)
T ss_dssp ------EEEEEC-TTHH-HHHTTCEECC------C-CCBCEEEEEEEEE-HHHHHHHHHHHSEETTEEECCHHHHTTSTT
T ss_pred ------EEecCC-cCcc-ccccceEEecccccCCC-ceeeEEEecchhH-HHHHHHHHHHhcCCCCceecChhhcCccCC
Confidence 112221 1333 45667777654 232 2233 45556676 999999999986 5789999999874
Q ss_pred --EEEeCCC
Q psy10612 326 --IVIPVAE 332 (426)
Q Consensus 326 --~Vi~~~~ 332 (426)
.+||+..
T Consensus 438 ~~~~i~~~~ 446 (485)
T 3qne_A 438 EPEFIPYIK 446 (485)
T ss_dssp CCSEEECCC
T ss_pred cceEeeccc
Confidence 6788764
No 34
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=5.5e-38 Score=323.52 Aligned_cols=278 Identities=18% Similarity=0.272 Sum_probs=217.7
Q ss_pred ccccCCCCCCCCC---------CCCC-ChhHHHHHHhcCCccccc----CCCcceeeccchHHHHHHHHHHHHHHHHHcC
Q psy10612 8 LVLPECGDSNRMM---------PISF-VLWNRKIGREQELFFFHE----LSPGSCFFQTKGAFIYNTLVEFIRSEYRKRG 73 (426)
Q Consensus 8 ~~~~~~~~~~~~~---------~~~~-~~~h~~l~~~~~l~~~~~----~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G 73 (426)
+.+|++ |+.++. .++| ..+|++||+++|+|+ .. .++|++.|+|.|+++.++|++++++.+.+.|
T Consensus 216 ~~vp~g-~e~~n~~~~~~g~~~~~~~~~~dH~~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~G 293 (536)
T 3err_A 216 PGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRG 293 (536)
T ss_dssp TTSCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCC-CCCCCeEEEEeCCCCCCCCCCCCHHHHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcC
Confidence 457888 665442 2233 579999999999998 54 3799999999999999999999999999999
Q ss_pred CeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCC-
Q psy10612 74 FQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSG- 152 (426)
Q Consensus 74 ~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~- 152 (426)
|++|.||.|.+.++|..+|+|+.|.++||++.+ ++++|+||+|++++.++++.+.|+++||+|++++|+|||+|.++
T Consensus 294 y~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~--~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~ 371 (536)
T 3err_A 294 FLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSF 371 (536)
T ss_dssp CEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT--TTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCT
T ss_pred CEEEeccccccHHHHHhcCCcccChhhceEecC--CCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCcccc
Confidence 999999999999999999999999999999975 68999999999999999999999999999999999999999842
Q ss_pred --CCCCCccceeEeEcCeeEecCcc--chHHHHHHHHHHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHHHHhh
Q psy10612 153 --ALTGLTRVRRFQQDDAHIFCTVE--QIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASL 228 (426)
Q Consensus 153 --~~~Gl~R~REF~q~d~~~fg~~~--~~~~e~~~~~~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l~~~l 228 (426)
.++||.|+|||+|.|+++|+.++ ++++++..+++.+.++|+.|||+|+++.... +.+|....
T Consensus 372 Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~t--gdlg~~a~------------ 437 (536)
T 3err_A 372 GKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVAT--GDMGPGKW------------ 437 (536)
T ss_dssp TSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCT--TTSCTTCS------------
T ss_pred CCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCC--cccCCChh------------
Confidence 27999999999999999999998 8999999999999999999999987765321 34443321
Q ss_pred ccCCCCceeCCCCCccccCccceeeecccCCc---eeeeeeeeeecCCeEEeEEEeCCCCccccCEEEecccccchHHHH
Q psy10612 229 NSFGEPWTENPGDGAFYGPKIDITITDALKRP---HQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMV 305 (426)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~GgleRll 305 (426)
..+. +++-+. +.+.. .+|++. .||+ +.+++++|.+.+|...-+.+++++++| ++|++
T Consensus 438 ----~~yD------------iE~w~p-~~~~~~Ei~s~sn~-~dyq-arr~~iry~~~~~k~~~vhtlngs~~a-~~R~l 497 (536)
T 3err_A 438 ----RQVD------------IEVYLP-SEGRYRETHSCSAL-LDWQ-ARRANLRYRDPEGRVRYAYTLNNTALA-TPRIL 497 (536)
T ss_dssp ----EEEE------------EEEEEG-GGTEEEEEEEEEEE-ETHH-HHHHTCEEECTTSCEEECEEEEEEEEE-ETHHH
T ss_pred ----heee------------eeEecC-CCCCeEEEEEecCc-cChh-hcccCeEEECCCCCeEeeeEEeccchh-HHHHH
Confidence 0000 011010 00111 122222 1443 466788887765542223345667776 99999
Q ss_pred HHHHHhc----C-CCCCCCCCCc
Q psy10612 306 AILTESY----A-GKWPFWISPR 323 (426)
Q Consensus 306 ~~l~e~~----g-~~~p~~~ap~ 323 (426)
.+|+|++ | +.+|+.++||
T Consensus 498 ~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 498 AMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp HHHHHHHBCTTSCEECCGGGHHH
T ss_pred HHHHHhcCCCCCcEeCChhhCCc
Confidence 9999975 4 6788888886
No 35
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=1.9e-35 Score=302.61 Aligned_cols=277 Identities=17% Similarity=0.227 Sum_probs=200.9
Q ss_pred CCCCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHH-HHHcCCeEeecccccchhhHhHhcccccc
Q psy10612 19 MMPISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSE-YRKRGFQEVVSPNVYNVKLWQTSGHWAHY 97 (426)
Q Consensus 19 ~~~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~-~~~~G~~~i~tP~l~~~~l~~~sg~~~~~ 97 (426)
-++.++..|..+++.+.|++.. ..++|+++|+|.|++++++|++++++. +.++||++|.||+|++.++|.+|||++.|
T Consensus 196 ~re~~f~~~~~~ll~raG~i~~-~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F 274 (522)
T 2cja_A 196 PMEHPFKEDPTQAMMKEGWLKR-GSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGV 274 (522)
T ss_dssp CCCCCCCSCHHHHHHHTTSEEE-CSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTC
T ss_pred ccCCCcchHHHHHHHHCCCeee-eCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCcc
Confidence 3555777898899999997532 268999999999999999999999975 89999999999999999999999999999
Q ss_pred cccceEee-----e--------------------------CCceEEEcCCCcHHHHHHHhhhhcCcCCCCceeee-eccc
Q psy10612 98 SENMFSFD-----V--------------------------ENETYALKPMNCPGHCLIFDHRVRSWRELPLRMAD-FGVL 145 (426)
Q Consensus 98 ~~e~y~~~-----d--------------------------~~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~-~g~~ 145 (426)
.++||.++ | .+++++||||+|+++++++++...++++||+++|| +|+|
T Consensus 275 ~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~ 354 (522)
T 2cja_A 275 YPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTS 354 (522)
T ss_dssp GGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEE
T ss_pred ccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCce
Confidence 99999995 3 25789999999999999999998999999999999 9999
Q ss_pred cccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHH-HHHHHHHHHcCCeEEEEEecCCCccCCCchhHHHHHHHH
Q psy10612 146 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGAL-DFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQL 224 (426)
Q Consensus 146 fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~-~~~~~il~~lgi~~~i~~~~~~~~~~G~~~~~~~~~~~l 224 (426)
||+| ++.++||+|+|||+|.|+++|+.++++++++..++ .++..+++.|||+ .+.+...+ .++|..... ..
T Consensus 355 FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v~~~~D~-f~~a~~G~~----G~- 426 (522)
T 2cja_A 355 HRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WRKARVTP-WFMAQEGLL----GL- 426 (522)
T ss_dssp ECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EEEEEC-------------------
T ss_pred EeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EEeeccCC-ccccccccc----cc-
Confidence 9999 55478999999999999999998888888888888 8888999999999 55543211 111100000 00
Q ss_pred HHhhccCCCCceeCCCCCccccCccceeeecccCCceeeeeee--eeecCCeEEeEEEeCCCCccccCEEEecccccchH
Q psy10612 225 EASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ--LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVE 302 (426)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~Ggle 302 (426)
.+.......+++.. -|- ....++..+|++.. .++ .+.+|++++.+ +. +++.+|+++| ++
T Consensus 427 ~q~~a~~k~DiE~~-------~P~-----~~g~~~~~eisS~s~~~d~-qarr~~Ir~~~--~~---~vht~~~Glg-v~ 487 (522)
T 2cja_A 427 AEENTVGTTDYEAC-------LPY-----RGPDGEWLEFQNVSINGDK-YPKGFNVKLQS--GD---ELWSGCSGVG-LE 487 (522)
T ss_dssp ---CCCEEEEEEEC-------CGG-----GCTTCCCEEEEEEEECTTH-HHHHHTCEETT--CC---CEEEEEEEEE-HH
T ss_pred hhccccceEEEEEe-------ccc-----ccCCCcEEEEeeechhhhh-cccccceEcCC--CC---EEEEeccCcH-HH
Confidence 00000000011110 000 00122223333221 122 25567777643 22 4555678887 99
Q ss_pred HHHHHHHHhcC---CCCCCCCCCc
Q psy10612 303 RMVAILTESYA---GKWPFWISPR 323 (426)
Q Consensus 303 Rll~~l~e~~g---~~~p~~~ap~ 323 (426)
|++.+|+|+++ +.||..+.|+
T Consensus 488 Rli~AlLE~~~~~~~~wP~~lr~y 511 (522)
T 2cja_A 488 RWAAVFLAQKGLDPANWPEEFRNR 511 (522)
T ss_dssp HHHHHHHHHHCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCchHHHHh
Confidence 99999999874 4677665554
No 36
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.97 E-value=4.9e-32 Score=267.12 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=138.2
Q ss_pred cCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHh--cccccccccceEeeeC-CceEEEcCCCc
Q psy10612 42 ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSFDVE-NETYALKPMNC 118 (426)
Q Consensus 42 ~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~s--g~~~~~~~e~y~~~d~-~~~~~LrP~~t 118 (426)
+.++|++||+|.++.++++|++.++++|.++||++|.||+|++.++|.++ |+++.+.++||+|.|+ |+.++||||.|
T Consensus 23 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T 102 (344)
T 1z7m_A 23 LLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFT 102 (344)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCc
Confidence 46899999999999999999999999999999999999999999999986 8888899999999998 89999999999
Q ss_pred HHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC
Q psy10612 119 PGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 119 ~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi 197 (426)
++++|+++.. +.++|+|+||+|+|||+|+++. +|+|||+|+|+|+||.++ .+|+|++.+ +.++|++||+
T Consensus 103 ~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~~----gR~REF~Q~g~ei~g~~~~~aDaEvi~l---~~~~l~~lgl 172 (344)
T 1z7m_A 103 LPLVRLYSQI---KDSTSARYSYFGKIFRKEKRHK----GRSTENYQIGIELFGESADKSELEILSL---ALQVIEQLGL 172 (344)
T ss_dssp HHHHHHHHTC---CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHHHHHH---HHHHHHHHTC
T ss_pred HHHHHHHHhc---CCCCCeEEEEECcEEccCCCCC----CCcceeEEEEEEEEcCCCcHHHHHHHHH---HHHHHHHCCC
Confidence 9999999875 5678999999999999998886 899999999999999988 788888765 4999999999
Q ss_pred e-EEEEEecC
Q psy10612 198 T-FNLRLSTR 206 (426)
Q Consensus 198 ~-~~i~~~~~ 206 (426)
+ +.+.+|++
T Consensus 173 ~~~~i~l~~~ 182 (344)
T 1z7m_A 173 NKTVFEIGSA 182 (344)
T ss_dssp SSEEEEEEEH
T ss_pred CcEEEEECCH
Confidence 7 99999886
No 37
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.97 E-value=1.2e-31 Score=266.83 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=140.4
Q ss_pred CCCCCChhHHHHHHhcCCcccccCCCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhccccccc-
Q psy10612 20 MPISFVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS- 98 (426)
Q Consensus 20 ~~~~~~~~h~~l~~~~~l~~~~~~~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~- 98 (426)
|+-+.++||++.-+... -.-++++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.++| +.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~ 79 (373)
T 3rac_A 4 MNGTRSAWGARAWEAVR--GFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESS 79 (373)
T ss_dssp --------------CCC--CCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSC
T ss_pred ccCCcCHHHHHHHHHHH--hcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcC--Cccch
Confidence 44556899999877742 223679999999999999999999999999999999999999999999999886 4667
Q ss_pred ccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCC--CCccceeEeEcCeeEecCc-
Q psy10612 99 ENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALT--GLTRVRRFQQDDAHIFCTV- 174 (426)
Q Consensus 99 ~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~--Gl~R~REF~q~d~~~fg~~- 174 (426)
++||+|.|+ |+.++||||.|++++|++++...+ .++|+|+||+|+|||+|+++... +.+|+|||+|+|+|+||.+
T Consensus 80 ~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d 158 (373)
T 3rac_A 80 RDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEA 158 (373)
T ss_dssp CCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCC
T ss_pred hceEEEECCCCCEEEECCcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCC
Confidence 899999998 899999999999999999876544 67899999999999999983211 3389999999999999999
Q ss_pred c-chHHHHHHHHHHHHHHHHHcCCe-EEEEEecCC
Q psy10612 175 E-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207 (426)
Q Consensus 175 ~-~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~ 207 (426)
+ .+|+|++.+ +.++|+.||++ +.+.++|+.
T Consensus 159 ~~~aDaEvi~l---~~~~l~~lgl~~~~i~l~~~~ 190 (373)
T 3rac_A 159 SVDVDMDVLRL---LHEASAAAGVRHHRIVVSHAR 190 (373)
T ss_dssp CHHHHHHHHHH---HHHHHHHHTCCSCEEEEEETT
T ss_pred CHHHHHHHHHH---HHHHHHHcCCCceEEEecCHH
Confidence 6 788888765 49999999995 999999974
No 38
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.94 E-value=1.7e-26 Score=222.32 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=142.7
Q ss_pred CCcceeeccchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeee-----------------
Q psy10612 44 SPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDV----------------- 106 (426)
Q Consensus 44 ~~G~~~~lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d----------------- 106 (426)
.+|++.+-+.+.++++.|++++++ ....||++|.||.+.+.++|.+||+|+.|.++||.+..
T Consensus 53 ~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 53 SDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcc
Confidence 489999999999999999999999 88899999999999999999999999999999998743
Q ss_pred --------CCceEEEcCCCcHHHHHHHhhh-hcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccch
Q psy10612 107 --------ENETYALKPMNCPGHCLIFDHR-VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQI 177 (426)
Q Consensus 107 --------~~~~~~LrP~~t~~i~~~~~~~-~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~ 177 (426)
.+.+++|.||+|+|++.++.+. ..+ +.|+|+..+|+|||+|.+ +||.|+|||+|.|+++||.++++
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tpEqs 206 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPDDV 206 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESHHHH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCHHHH
Confidence 1357999999999999999965 444 349999999999999983 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEec
Q psy10612 178 GDEIVGALDFLRNVYSIFGFTFNLRLST 205 (426)
Q Consensus 178 ~~e~~~~~~~~~~il~~lgi~~~i~~~~ 205 (426)
.+++..+++.+.++|+.|||+|++.+.+
T Consensus 207 ~~e~e~l~~~ae~il~~LgLpyrv~~~~ 234 (346)
T 3mf2_A 207 SDFRERWMVRAQAIARDLGLTFRVDYAS 234 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 9999999999999999999999888754
No 39
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.88 E-value=4.1e-23 Score=197.38 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=107.1
Q ss_pred HHHHHHHH--HHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCC-
Q psy10612 59 NTLVEFIR--SEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRE- 134 (426)
Q Consensus 59 ~~i~~~i~--~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~- 134 (426)
+.|+++++ +.++++||++|.||+|++.++|.+ + .|.|+ |+.++||||.|+|++ ++.. .+.+
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d---~f~d~~g~~l~LRpd~T~~~a---~~~~-~~~~~ 68 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N---FFLDRKGNLFSIREDFTKTVL---NHRK-RYSPD 68 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S---CEEETTSCEEEECCCHHHHHH---HHHT-TCTTC
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c---ccCCCCCCEEEeCCcChHHHH---HHHh-hcCCC
Confidence 35777777 999999999999999999999964 1 45576 899999999999999 3333 3556
Q ss_pred CCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCCe-EEEEEecCC
Q psy10612 135 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207 (426)
Q Consensus 135 lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi~-~~i~~~~~~ 207 (426)
+|+|+||+|+|||+|+++. |||+|+|+|+||.++ .+|+|++.++ .++|+.||++ +.+.+|+++
T Consensus 69 ~p~R~~y~g~vfR~e~~~~-------Ref~Q~g~ei~g~~~~~~DaEvi~l~---~~~l~~lgl~~~~i~l~~~~ 133 (275)
T 1usy_A 69 SQIKVWYADFVYRYSGSDL-------VAEYQLGLEKVPRNSLDDSLEVLEII---VESASEFFEGPVIVEIGHTG 133 (275)
T ss_dssp CCEEEECCEEEEEEETTEE-------EEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHHHCCSCEEEEEEETT
T ss_pred CceEEEEeceEEecCCCCC-------CeeeEeCEEEecCCCchhHHHHHHHH---HHHHHHcCCCCeEEEeCCHH
Confidence 8999999999999998872 999999999999988 7899987665 9999999996 999999985
No 40
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.77 E-value=1.3e-18 Score=166.77 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC-CceEEEcCCCcHHHHHHHhhhhcCcCC
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE-NETYALKPMNCPGHCLIFDHRVRSWRE 134 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~-~~~~~LrP~~t~~i~~~~~~~~~~~~~ 134 (426)
..++++++.+++.|..+||++|.||.|++.++|.++|+++. ++||.+.+. +++++|||+.++++.++++....+ ++
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~--~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~-~~ 147 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERL-WD 147 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTT-SC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcc--cccEEeecccccchhhhhcChHHHHHHHHHHHhC-CC
Confidence 34688999999999999999999999999999999887652 256644322 456899999999999877765544 68
Q ss_pred CCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHHcCC-eEEEEE
Q psy10612 135 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSIFGF-TFNLRL 203 (426)
Q Consensus 135 lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~lgi-~~~i~~ 203 (426)
+|+|+|++|+|||+|.++. +|+|||+|.+++++|.++ ....++.. ++..++++||+ +|.+.-
T Consensus 148 ~PlrlfeiG~vFR~E~~~~----~r~~EF~qle~~i~g~~~~~~f~elkg---~le~ll~~LGl~~~~~~~ 211 (288)
T 3dsq_A 148 KPIRIFEIGTCYRKESQGA----QHLNEFTMLNLTELGTPLEERHQRLED---MARWVLEAAGIREFELVT 211 (288)
T ss_dssp SCEEEEEEEEEECSCCSSS----CCCSEEEEEEEEEETCCGGGHHHHHHH---HHHHHHHHHTCCCCEEEE
T ss_pred CCEEEEEEeeEEecCCCCC----CcCccEEEEEEEEEcCCchhhHHHHHH---HHHHHHHHcCCCCcEEec
Confidence 9999999999999998876 899999999999999876 55666654 45999999999 466553
No 41
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.69 E-value=6.7e-17 Score=134.53 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=92.5
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCC-CCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccC-
Q psy10612 320 ISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDS-SDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDN- 397 (426)
Q Consensus 320 ~ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~-~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~- 397 (426)
-.|.||.|+|+++...+||.+|++.|++.|++|++|+++ +.++|++++.|.+.++||++|||++|.++|+|+|+.+..
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~ 85 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT 85 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCCC
Confidence 368999999999999999999999999999999999822 799999999999999999999999999999999999988
Q ss_pred -CeeeeecHHHHHHHHHHHHhhcc
Q psy10612 398 -IVHGEFSVDDVITRFGKLKENRT 420 (426)
Q Consensus 398 -~~q~~v~~~el~~~i~~~~~~~~ 420 (426)
+++..++++++++.|...+..+.
T Consensus 86 ~~e~~~m~lde~i~~l~~~~~~~~ 109 (130)
T 1v95_A 86 PQEHRNMPQADAMVLVARNYERYK 109 (130)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCccCccCHHHHHHHHHHHHHHHh
Confidence 88889999999999876665543
No 42
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.59 E-value=1.1e-14 Score=139.92 Aligned_cols=133 Identities=17% Similarity=0.274 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccc--cccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcCCC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWA--HYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWREL 135 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~--~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~~l 135 (426)
++++.+.+++.|...||+||.||+|++.+.|.+.+... .+.+++|.+ ++..+|||+.++++.+.++.+. +..+.
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~LR~slsp~L~~~l~~n~-~~~~~ 154 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV---DKNFCLRPMLTPNLYNYLRKLD-RALPD 154 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE---TTTEEECSCSHHHHHHHHHHHT-TTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee---CCCeeEcccChHHHHHHHHHhh-ccCCC
Confidence 68899999999999999999999999999988765322 245568877 4689999999999998877643 33578
Q ss_pred CceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCeEEEE
Q psy10612 136 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 202 (426)
Q Consensus 136 P~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~~~i~ 202 (426)
|+|+|++|+|||+|..+. .|.+||+|.+++++|... ...++.. ++..+++.||++|.+.
T Consensus 155 p~rlfeiG~vFR~E~~~~----~~~~Ef~ql~~~~~g~~~-~f~elkg---~le~ll~~lGl~~~~~ 213 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESDGK----EHLEEFTMLVFWQMGSGC-TRENLES---IITDFLNHLGIDFKIV 213 (290)
T ss_dssp SEEEEEEEEEECCCSCSS----SCCSEEEEEEEEEESTTC-CHHHHHH---HHHHHHHHHTCCCEEE
T ss_pred CeEEEEEcCEEecCCCCC----cCcchheEEEEEEEcCCh-HHHHHHH---HHHHHHHHcCCCcEEe
Confidence 999999999999997765 799999999999999754 3445544 4589999999986654
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.28 E-value=2.1e-11 Score=117.13 Aligned_cols=112 Identities=12% Similarity=0.018 Sum_probs=85.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCeEeecccccch-hhHhHh-cccccccccceEeeeCCceEEEcCCCcHHHHHHHhhh
Q psy10612 51 QTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV-KLWQTS-GHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHR 128 (426)
Q Consensus 51 lP~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~-~l~~~s-g~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~ 128 (426)
.....+++.+|.+.+++.|.++||.+|+||+|++. +++..+ .. +. .++|.+.--++.++|+...+...-++.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~-e~--a~~f~~~~~~~~~~L~~Spe~~~~~l~--- 84 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG-EG--MEPAEVEIYGVKMRLTHSMILHKQLAI--- 84 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC-CC--CCCCEEEETTEEEEECSCSHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCC-Cc--ceeEEEEcCCCCEEeccChHHHHHHHh---
Confidence 34568899999999999999999999999999999 888765 32 33 667876544778999855444333222
Q ss_pred hcCcCCCCceeeeeccccccCCCCCCCCCccce-eEeEcCeeEecCc
Q psy10612 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 174 (426)
Q Consensus 129 ~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~R-EF~q~d~~~fg~~ 174 (426)
.. -|.|+||+|+|||+|.||. .+ +|.+ ||+|+|+|..+.+
T Consensus 85 -~~---g~~rvf~ig~~FR~E~pq~-~~-~RH~~EFtqle~e~~~~~ 125 (294)
T 1nnh_A 85 -AM---GLKKIFVLSPNIRLESRQK-DD-GRHAYEFTQLDFEVERAK 125 (294)
T ss_dssp -HT---TCCEEEEEEEEECCCCGGG-CS-SSCCSEEEEEEEEEETCC
T ss_pred -hc---CccceEEEEccEeCCCCCC-CC-CccccceeEEEEEecCCC
Confidence 11 2789999999999999662 11 4777 9999999999985
No 44
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.08 E-value=7.4e-10 Score=113.25 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+|.+.+++.|..+||.+|.||+|++.+ ++. +.++|.+.-.|+.++||-..+...-+++ ..
T Consensus 176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~~----ga~~f~~~~~~~~~~L~~Spql~~k~l~----~~- 242 (487)
T 1eov_A 176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEG----GSSVFEVTYFKGKAYLAQSPQFNKQQLI----VA- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSS----SSCCCEEEETTEEEEECSCTHHHHHHHH----HT-
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CCC----CcccceeccCCccEEcccChHHHHHHHH----hc-
Confidence 4578899999999999999999999999999864 221 4578888766889999933332222221 11
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccce-eEeEcCeeE-ecCcc-chHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHI-FCTVE-QIGDEIVGA 184 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~R-EF~q~d~~~-fg~~~-~~~~e~~~~ 184 (426)
-+-|+||||+|||+|.++. .|.+ ||+|+|+|. |+.+. +..+.+..+
T Consensus 243 --g~~rvy~ig~~FR~E~~~~----~Rh~pEFt~le~e~af~~~~~dlm~l~E~l 291 (487)
T 1eov_A 243 --DFERVYEIGPVFRAENSNT----HRHMTEFTGLDMEMAFEEHYHEVLDTLSEL 291 (487)
T ss_dssp --TCCEEEEEEEEECCCCCCC----TTCCSEEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred --CCCceEEEeccEecCCCCC----CccchhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 2569999999999999876 7888 999999996 87643 433333333
No 45
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.08 E-value=6.8e-10 Score=111.76 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+|.+.+++.|..+||.+|.||+|++.. .+ -..++|.+...++.++|+-..+...-+ ++..
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~----~e----~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g---- 198 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASA----TE----GGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGV---- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SS----TTCCCCEEEETTEEEEECSCCHHHHHH-HHHH----
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC----CC----CCceeEEEecCCceEEecCCcHHHHHH-HHhC----
Confidence 4578899999999999999999999999999762 21 145788886558899998444433333 2221
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccce-eEeEcCeeEecCcc
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTVE 175 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~R-EF~q~d~~~fg~~~ 175 (426)
+-|+||+|+|||+|.++. .|-+ ||+|.|+|..+.+.
T Consensus 199 ---~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~~ 235 (429)
T 1wyd_A 199 ---VERVFEVAPAWRAEESDT----PFHLAEFISMDVEMAFADY 235 (429)
T ss_dssp ---HSEEEEEEEEECCCCCCS----SSCCSEEEEEEEEEETCCH
T ss_pred ---cCceEEEcccccccCCcc----ccccceeeEeeeeecCCCH
Confidence 579999999999999876 6887 99999999998863
No 46
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.03 E-value=1.3e-09 Score=109.94 Aligned_cols=102 Identities=15% Similarity=0.010 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEc--CCCcHHHHHHHhhhh
Q psy10612 52 TKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALK--PMNCPGHCLIFDHRV 129 (426)
Q Consensus 52 P~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~Lr--P~~t~~i~~~~~~~~ 129 (426)
..-.+++.+|.+.+++.|..+||.+|+||+|++.. .+ -..++|.+.--++.++|| |+.. .-+++
T Consensus 132 ~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~----~e----~~~~~f~~~~~~~~~~Lr~Spel~--~~~~~---- 197 (434)
T 1x54_A 132 SAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGA----VE----GGATLFKLKYFDKYAYLSQSAQLY--LEAAI---- 197 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC----SS----CGGGCCEEEETTEEEEECSCSHHH--HHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeec----CC----CCceeEEEeecCCcEEeccChHHH--HHHHh----
Confidence 35678899999999999999999999999999662 11 145788875558899999 4332 11111
Q ss_pred cCcCCCCceeeeeccccccCCCCCCCCCccce-eEeEcCeeEecCcc
Q psy10612 130 RSWRELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTVE 175 (426)
Q Consensus 130 ~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~R-EF~q~d~~~fg~~~ 175 (426)
. -|.|+||+|+|||+|.++. .|.+ ||+|.|+|..+.+.
T Consensus 198 -~---g~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~~ 236 (434)
T 1x54_A 198 -F---GLEKVWSLTPSFRAEKSRT----RRHLTEFWHLELEAAWMDL 236 (434)
T ss_dssp -H---HHSEEEEEEEEECCCCCCC----SSCCSEEEEEEEEEETCCH
T ss_pred -c---CccceEEEecceecCCCCC----cccccEEEEeeEEEcCCCH
Confidence 1 2679999999999999876 6887 99999999998863
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.95 E-value=1.4e-09 Score=109.17 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+|.+.+++.|..+||.+|.||+|++.. ++. ..++|.+...++.++|+-..+... ++++.
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~----~e~----~~~~f~~~~~g~~~~L~~Spel~~-~~l~~----- 188 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG----AEG----GSGLFGVDYFEKRAYLAQSPQLYK-QIMVG----- 188 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHH-HHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC----CCC----CceeEEEeeCCCcEEeeeCHHHHH-HHHhh-----
Confidence 4578899999999999999999999999999762 221 346777743477899983222222 22221
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccce-eEeEcCeeEecCc
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTV 174 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~R-EF~q~d~~~fg~~ 174 (426)
. +-|+||+|+|||+|.++. .|-+ ||+|.|+|..+..
T Consensus 189 -g-~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~ 225 (422)
T 1n9w_A 189 -V-FERVYEVAPVWRMEEHHT----SRHLNEYLSLDVEMGFIA 225 (422)
T ss_dssp -H-HSEEEEEEEC-----------------CCEEEEEEEESCS
T ss_pred -C-CCceeEEeCceECCCCCC----CcccceeEEeeeeeeCCC
Confidence 1 359999999999999876 7888 9999999999983
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.94 E-value=5.4e-09 Score=106.88 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
.-.+++.+|.+.+++.|...||.+|.||+|.+.. .|. ..++|.+..+ ++.++||-..+...-+++ .
T Consensus 172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~----~Ga----~a~~F~~~~~~~~~~~yLr~SpqLylk~l~----v 239 (493)
T 3a74_A 172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA----GGA----AARPFITHHNALDMTLYMRIAIELHLKRLI----V 239 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SSCCCEEEETTTTEEEEECSCSHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC----CCC----cccceEecccCCCceeEEecCHHHHHHHHh----h
Confidence 4578899999999999999999999999998652 221 3467877633 889999943332221111 1
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
+ -.-|+|+||+|||+|.... .|..||+|.|+|....+- +.......+
T Consensus 240 ~---G~~rVyeig~~FR~E~~~~----rH~pEFT~lE~e~af~d~~dlm~l~E~l 287 (493)
T 3a74_A 240 G---GLEKVYEIGRVFRNEGIST----RHNPEFTMLELYEAYADFRDIMKLTENL 287 (493)
T ss_dssp T---TCCEEEEEEEEECCCCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHH
T ss_pred c---ccCceEEECccccCCCCCc----ccCCceeEEEEEecCCCHHHHHHHHHHH
Confidence 1 2469999999999999886 899999999999888754 333333333
No 49
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.85 E-value=1.6e-08 Score=103.53 Aligned_cols=113 Identities=15% Similarity=0.044 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
.-.+++.+|.+.+|+.|...||.+|+||+|.+.. .|. ..++|.+..+ +..++||-..+...-++++.
T Consensus 181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~----~Ga----~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~--- 249 (504)
T 1e1o_A 181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVIP----GGA----SARPFITHHNALDLDMYLRIAPELYLKRLVVG--- 249 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC----CSS----CCCCCEEEETTTTEEEEECSCSHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC----CCC----cccceEeccCCCCceEEeccCHHHHHHHHhhc---
Confidence 3467889999999999999999999999998652 221 2467766533 78999995444332222221
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
-.-|+|+||+|||+|.... .|..||+|+|+|....+- +.......+
T Consensus 250 ----G~~rVyeIg~~FR~E~~~~----rH~pEFt~lE~e~af~d~~dlm~l~E~l 296 (504)
T 1e1o_A 250 ----GFERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESL 296 (504)
T ss_dssp ----TCCEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred ----CCCcEEEEcccccCCCCCc----cccCceeeeeeeecCCCHHHHHHHHHHH
Confidence 1349999999999999876 899999999999887753 333333333
No 50
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.83 E-value=2.2e-08 Score=97.94 Aligned_cols=114 Identities=14% Similarity=0.007 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC------CceEEEcCCCcHHHHHHHhh
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE------NETYALKPMNCPGHCLIFDH 127 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~------~~~~~LrP~~t~~i~~~~~~ 127 (426)
-.+++.+|.+.+|+.|...||.+|+||+|.+... + .-..+.|.+.-- +..++|+-..+...-++++.
T Consensus 35 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~----~---~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~ 107 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV----T---DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVA 107 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC----C---CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC----C---CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHc
Confidence 5788999999999999999999999999987541 1 112345554321 36788986555444444433
Q ss_pred hhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 128 RVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 128 ~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
. + =|+||||+|||+|.... .|..||+|.|+|.-..+- +....+..++
T Consensus 108 g------~-~rvyqIg~~FR~E~~~~----rH~pEFt~lE~e~af~d~~d~m~~~E~li 155 (345)
T 3a5y_A 108 G------C-GPVFQLCRSFRNEEMGR----YHNPEFTMLEWYRPHYDMYRLMNEVDDLL 155 (345)
T ss_dssp T------C-CSEEEEEEEECCCCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred C------C-CcEEEEEcceeCCCCcc----cccchhheeeeeeeCCCHHHHHHHHHHHH
Confidence 2 1 29999999999999876 799999999999877653 4444444443
No 51
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.68 E-value=1.3e-07 Score=95.27 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+|.+.+++.|...||.+|.||+|.+... -| +.++|.+..-++.++|+...+...-++++ .
T Consensus 135 ~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---eg-----~~~~f~~~~~~~~~yL~~Spql~~q~l~~----~- 201 (438)
T 3nem_A 135 AIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EG-----GTELFPMKYFEEDAFLAQSPQLYKQIMMA----S- 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---SC-----SSSCCEEEETTEEEEECSCSHHHHHHGGG----T-
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---CC-----CccceeEeeCCccEEEecChHHHHHHHHh----c-
Confidence 35788899999999999999999999999987641 12 34567776557889998655543332221 1
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccc-eeEeEcCeeEecCc-c-chHHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRV-RRFQQDDAHIFCTV-E-QIGDEIVGAL 185 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~-REF~q~d~~~fg~~-~-~~~~e~~~~~ 185 (426)
. .-|+|+||+|||+|.... .|- .||+|.|+|.-..+ - +....+..++
T Consensus 202 -g-~~rvf~i~~~FR~E~~~t----~RH~pEFt~le~e~a~~~~~~d~m~~~E~li 251 (438)
T 3nem_A 202 -G-LDRVYEIAPIFRAEEHNT----TRHLNEAWSIDSEMAFIEDEEEVMSFLERLV 251 (438)
T ss_dssp -T-CCEEEEEEEEECCCSSCC----TTCCSEEEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred -C-CCceEEEcceEECCCCCC----cccccceeeeeeeeccCccHHHHHHHHHHHH
Confidence 1 249999999999998764 444 59999999987776 3 4444444443
No 52
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.60 E-value=3.1e-07 Score=92.67 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=79.3
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+|.+.+|+.|...||.||+||+|..... .| +.++|.+.--|+.++|+-..+...-.++. .
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG-----~~~~F~~~~~g~~~~L~~SpqLylq~l~~----g- 196 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EG-----GSTLFNLDYFGEQSFLTQSSQLYLETCIP----T- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SC-----TTSCCEEEETTEEEEECSCSHHHHHHHHH----H-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CC-----chhceeeccCCcccccCCChHHHHHHhhh----c-
Confidence 45788999999999999999999999999977653 22 23456654447889998544332222211 1
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccce-eEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVR-RFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~R-EF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
-=|+||||+|||+|.... .|-. ||+|.|+|.-..+- +....+..++
T Consensus 197 ---~~rvfeIg~~FR~E~~~t----~RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 197 ---LGDVFCIAQSYRAEKSRT----RRHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp ---HCSEEEEEEEECCCSSCC----TTCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred ---cCceEEEecceecCCCCc----cccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 239999999999998653 4655 99999999877654 4444444443
No 53
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.56 E-value=5.2e-07 Score=91.73 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeec-ccccchh-hHhHhcc-ccccc---ccceEeeeC---------------------
Q psy10612 55 AFIYNTLVEFIRSEYRKRGFQEVVS-PNVYNVK-LWQTSGH-WAHYS---ENMFSFDVE--------------------- 107 (426)
Q Consensus 55 ~~~~~~i~~~i~~~~~~~G~~~i~t-P~l~~~~-l~~~sg~-~~~~~---~e~y~~~d~--------------------- 107 (426)
..-.+.+.+.+++.|...||+++.+ |.+++.. -|..-.. .+... .+.|.+.+.
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3456788899999999999999875 7766542 2222110 01111 122444321
Q ss_pred ---------------CceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEec
Q psy10612 108 ---------------NETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC 172 (426)
Q Consensus 108 ---------------~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg 172 (426)
++..+||+..++...+.+..+....+..|+|+|++|+|||+|..+. .++.+|+|.+..+.+
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~Da----tHlpeFhQlegl~~~ 379 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDA----THLAEFHQIEGVVAD 379 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCS----SSCSEEEEEEEEEEE
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCC----CcCCeEEEEEEEEEC
Confidence 1468999999999999887654322457999999999999998776 788999999998876
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCe-EEEE
Q psy10612 173 TVEQIGDEIVGALDFLRNVYSIFGFT-FNLR 202 (426)
Q Consensus 173 ~~~~~~~e~~~~~~~~~~il~~lgi~-~~i~ 202 (426)
.+ -...++..+ ...+++.||+. ++.+
T Consensus 380 ~~-v~f~dLKg~---Le~~l~~lG~~~~rfr 406 (508)
T 3l4g_A 380 HG-LTLGHLMGV---LREFFTKLGITQLRFK 406 (508)
T ss_dssp ES-CCHHHHHHH---HHHHHHTTTCCCCEEE
T ss_pred CC-CCHHHHHHH---HHHHHHHcCCcceEee
Confidence 43 334444444 48889999974 5443
No 54
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.55 E-value=5.5e-07 Score=92.63 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
.-.+++.+|.+.+|+.|...||.+|.||+|.+.. .|. ..+.|....+ +..++|+-..+...-++++..
T Consensus 174 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----gGa----~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g-- 243 (521)
T 3bju_A 174 QKFIIRSKIITYIRSFLDELGFLEIETPMMNIIP----GGA----VAKPFITYHNELDMNLYMRIAPELYHKMLVVGG-- 243 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SCCCCEEEETTTTEEEEECSCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC----CCc----cccceeeecccCCcceEeeCCHHHHHHHHHhcC--
Confidence 3467889999999999999999999999998642 221 2345544333 788999966654444443321
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
. =|+|+||+|||+|.... -+.-||+|.|+|.-..+- .....+..++
T Consensus 244 -~----~rVyeig~~FR~E~~~t----rH~pEFtmlE~e~af~d~~dlm~l~E~li 290 (521)
T 3bju_A 244 -I----DRVYEIGRQFRNEGIDL----THNPEFTTCEFYMAYADYHDLMEITEKMV 290 (521)
T ss_dssp -C----CEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred -c----CceEEEEcceeCCCCCC----ccchhhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 1 38999999999998775 689999999999777653 4434444443
No 55
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.50 E-value=9.1e-07 Score=90.74 Aligned_cols=114 Identities=14% Similarity=-0.022 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
.-.+++.+|.+.+|+.|...||.+|.||+|.+.. |+. ..+.|..... +.+++|+-..+...-++++..
T Consensus 202 ~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gGA---~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G-- 271 (529)
T 4ex5_A 202 TTFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GGA---AAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG-- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS---SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CCC---cccccccccccCCcceecccCHHHHHHHHHhcC--
Confidence 3478899999999999999999999999998542 221 1234433222 678899865554444443321
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
-=|+|+||+|||+|.... .+.-||+|.|+|.-..+- .....+..++
T Consensus 272 -----~~rVyeIg~~FR~E~~~~----rH~pEFtmlE~e~af~d~~dlm~l~E~li 318 (529)
T 4ex5_A 272 -----FERVFEINRNFRNEGVSP----RHNPEFTMMEFYAAYTDYRWLMDFTERLI 318 (529)
T ss_dssp -----CSEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred -----CCcEEEeehheecCCCCC----CcccHhHhhhhhhhcCCHHHHHHHHHHHH
Confidence 139999999999998765 799999999999766643 4444444443
No 56
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.44 E-value=1.2e-06 Score=91.34 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC---CceEEEcCCCcHHHHHHHhhhh
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHRV 129 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~---~~~~~LrP~~t~~i~~~~~~~~ 129 (426)
.-.+++.+|.+.+|+.|...||.||+||+|.... .++ +.+ |.+..+ +.-++|+-......-++++
T Consensus 136 ~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~----~eG----Ar~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv--- 203 (585)
T 1c0a_A 136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKAT----PEG----ARD-YLVPSRVHKGKFYALPQSPQLFKQLLMM--- 203 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC----SSS----SCC-CEEECSSSTTCEEECCSCSHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCC----CCC----Ccc-ceecccccCCceEeCccCHHHHHHHHHh---
Confidence 3468899999999999999999999999998543 111 122 444322 4445677433322222222
Q ss_pred cCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHH
Q psy10612 130 RSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGAL 185 (426)
Q Consensus 130 ~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~ 185 (426)
+-- =|+||||+|||+|.... -|.-||+|.|+|.-..+- +....+..++
T Consensus 204 -~G~---~rvfqI~~~FR~E~~~t----~r~pEFT~lE~e~af~d~~dvm~~~E~li 252 (585)
T 1c0a_A 204 -SGF---DRYYQIVKCFRDEDLRA----DRQPEFTQIDVETSFMTAPQVREVMEALV 252 (585)
T ss_dssp -TTC---CEEEEEEEEECCCCCBT----TBCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred -cCC---CceEEEeceeecCCCCC----CcCcccceeeeeecCCCHHHHHHHHHHHH
Confidence 211 29999999999998876 688899999999666553 4444444444
No 57
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.43 E-value=1.4e-06 Score=90.71 Aligned_cols=118 Identities=15% Similarity=0.094 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC---CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE---NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~---~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
-.+++.+|.+.+|+.|...||.||+||+|..... ++ ..+ |.+..+ +.-++|+-......-++++
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~----eG----Ar~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv---- 209 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP----EG----ARD-FLVPYRHEPGLFYALPQSPQLFKQMLMV---- 209 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SS----SCC-CEEECTTSTTEEEECCSCSHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CC----CCC-ccccccccCCceeECccCHHHHHHHHHH----
Confidence 4688899999999999999999999999986431 11 122 444322 3445576433322222222
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHHHHHHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGALDFLRNVYSI 194 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~~~~~~~il~~ 194 (426)
+-- =|+||||+|||+|.... -|.-||+|.|+|.-..+- +....+..++ ..+++.
T Consensus 210 ~G~---~rvfqI~~~FR~E~~~~----~r~pEFT~lE~e~af~d~~dvm~~~E~li---~~i~~~ 264 (580)
T 1l0w_A 210 AGL---DRYFQIARCFRDEDLRA----DRQPDFTQLDLEMSFVEVEDVLELNERLM---AHVFRE 264 (580)
T ss_dssp TTC---SEEEEEEEEECCCCCCS----SCCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHH
T ss_pred hcc---CCeEEEeceeeCCCCCC----CcCCCccceeeeecCCCHHHHHHHHHHHH---HHHHHH
Confidence 211 29999999999998876 688899999999666553 4444444444 444443
No 58
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=98.36 E-value=2.1e-06 Score=86.94 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 53 KGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 53 ~~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+|.+.+|+.|...||.||+||+|..... .|+ .++|.+.--+..++|+-..+...-++++ .
T Consensus 154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---eGg-----~~~f~~~~~~~~~~L~~SpqL~lq~l~~----g- 220 (456)
T 3m4p_A 154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---EGG-----STLFKLQYFNEPAYLTQSSQLYLESVIA----S- 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--------------CCCCEEEETTEEEEECSCCHHHHHTTHH----H-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---CCc-----cccccccccCCCcccccCHHHHHHHHHh----c-
Confidence 34788999999999999999999999999976542 122 3355554337888998765543332221 1
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
--|+|+||+|||+|..... -..-||+|.|+|.-..+- +....+..+
T Consensus 221 ---~~rVyeig~~FR~E~~~t~---rH~pEFtmlE~e~af~d~~d~m~~~E~l 267 (456)
T 3m4p_A 221 ---LGKSFCMLSSYRAEQSRTV---RHLAEYLHLEAELPFISFEDLLNHLEDL 267 (456)
T ss_dssp ---HSSEEEEEEEECCCSCCCS---SCCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred ---cCcEEEEEhheecCCCCCC---cchHHHHHhHHHHhcCCHHHHHHHHHHH
Confidence 1389999999999975420 234599999999777653 433334333
No 59
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.33 E-value=3.3e-06 Score=82.50 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHcCCeEeecccccchh-hHhHhc----ccccccccceEeeeC-C-----------ceEEEcCCCcH
Q psy10612 57 IYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTSG----HWAHYSENMFSFDVE-N-----------ETYALKPMNCP 119 (426)
Q Consensus 57 ~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~-l~~~sg----~~~~~~~e~y~~~d~-~-----------~~~~LrP~~t~ 119 (426)
-...+.+.+++.|...||+++.+|.+++.. .|..-+ |-..-..+.|.+... . +..+||+...+
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 356788888999999999999999998753 233221 100001234555432 2 66789999999
Q ss_pred HHHHHHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHc-CCe
Q psy10612 120 GHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GFT 198 (426)
Q Consensus 120 ~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~l-gi~ 198 (426)
...+.+.. ...|+|+|++|+|||+|.... -...||+|.++.+.|.+-. -..+ ......+++.+ |.+
T Consensus 182 ~llr~l~~-----~~~piriFEiGrVFR~d~~d~----tH~pEF~qlegl~~g~~v~-f~dL---Kg~le~ll~~lfG~~ 248 (350)
T 1b7y_A 182 MQVRYMVA-----HTPPFRIVVPGRVFRFEQTDA----THEAVFHQLEGLVVGEGIA-MAHL---KGAIYELAQALFGPD 248 (350)
T ss_dssp HHHHHHHH-----CCSSEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEEETTCC-HHHH---HHHHHHHHHHHSCSS
T ss_pred HHHHHHHh-----cCCCeeEEEeeeEEECCCCCC----CCCChhHEEEEEEECCCCC-HHHH---HHHHHHHHHhhcCCC
Confidence 99888765 256999999999999875333 3568999999999997321 1222 23347777777 764
No 60
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=98.31 E-value=2e-06 Score=88.35 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
-.+++.+|.+.+|+.|...||.+|.||+|..... -| +.+.|.+.--+..++|+-......-++++..
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---eg-----ga~~F~v~~~~~~~yL~~Spql~~k~ll~~g----- 309 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---EG-----GSNIFEVKYFDRKAYLAQSPQLYKQMAIMGD----- 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---CC-----CcceeEEecCCCceEeccCHHHHHHHHHhcC-----
Confidence 4678899999999999999999999999987751 11 2234443222566788755443333333221
Q ss_pred CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeE-ecCc-cchHHHHHHH
Q psy10612 134 ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTV-EQIGDEIVGA 184 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~-fg~~-~~~~~e~~~~ 184 (426)
-=|+|+||+|||+|..... ...-||+|.|+|. |+.+ ++....+..+
T Consensus 310 --~~rVfeI~~~FR~E~~~t~---RHl~EFtmlE~e~af~~d~~d~m~~~E~l 357 (548)
T 3i7f_A 310 --FRKVFEVGPVFRAENSNTR---RHLTEFEGLDIEMEIVENYHECIDVMEKL 357 (548)
T ss_dssp --CCEEEEEEEECCCSCCCSS---SCCSCEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred --cCcEEEEeeeEecCCCCCC---CcchhhhchhhhhhhhcCHHHHHHHHHHH
Confidence 2499999999999986420 2456999999994 7643 3433333333
No 61
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=98.29 E-value=4e-06 Score=87.33 Aligned_cols=111 Identities=19% Similarity=0.160 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHH-HcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhc
Q psy10612 54 GAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 54 ~~~~~~~i~~~i~~~~~-~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
-.+++.+|.+.+|+.|. ..||.+|+||+|.... .++. .-|.+..+ +..++|+-......-++++.
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~GA-----~~F~v~~~~~g~~~~L~qSpql~kq~l~v~--- 214 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGGA-----KEFLVPSREPGKFYSLPQSPQQFKQLLMVG--- 214 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSSS-----CCCEEECSSTTCEEECCSSTTHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCCC-----cCceeccccCCcccccccCHHHHHHHHHhc---
Confidence 46888999999999996 7999999999997532 2221 12444322 67788875443222222221
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chHHHHHHH
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIGDEIVGA 184 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~~e~~~~ 184 (426)
-- =|+||||+|||+|.... .|..||+|.|+|.-..+- +....+..+
T Consensus 215 -g~---~rvfqi~~~FR~E~~~t----~r~pEFt~lE~e~af~d~~d~m~~~E~l 261 (617)
T 4ah6_A 215 -GL---DRYFQVARCYRDEGSRP----DRQPEFTQIDIEMSFVDQTGIQSLIEGL 261 (617)
T ss_dssp -SC---SEEEEEEEEECCCSSCS----SSCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred -cc---CcEEEEEhheecccCCC----CcCcceecceeeecCCCHHHHHHHHHHH
Confidence 11 29999999999998876 689999999999766543 333433333
No 62
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.27 E-value=5.9e-06 Score=84.38 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=64.6
Q ss_pred eEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHH
Q psy10612 110 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 188 (426)
Q Consensus 110 ~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~ 188 (426)
..+|||+.++++...++.+. +.++.|+|+|++|+|||+|.. +. .+.+||+|.++.+.|.+.. -.++. ..+
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d~~~d~----th~~Ef~qLagli~G~~vd-f~dLK---gil 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRREQGEDA----TRLYTYFSASCVLVDEELS-VDDGK---AVA 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCCTTCSS----SCCSEEEEEEEEEECSSCC-HHHHH---HHH
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecCccccc----cccceeeEEEEEEECCCCC-HHHHH---HHH
Confidence 47999999998888776543 345789999999999998776 65 5789999999999997432 23343 345
Q ss_pred HHHHHHcCCe-EEEEE
Q psy10612 189 RNVYSIFGFT-FNLRL 203 (426)
Q Consensus 189 ~~il~~lgi~-~~i~~ 203 (426)
..+++.||+. +++.-
T Consensus 251 E~LL~~LGi~~~r~~~ 266 (534)
T 2du3_A 251 EALLRQFGFENFRFRK 266 (534)
T ss_dssp HHHHGGGTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8899999985 55543
No 63
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.23 E-value=4e-06 Score=80.21 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHcCCeEeecccccchhh-HhHhcc-cccc---cccceEeeeCCceEEEcCCCcHHHHHHHhhhhcC
Q psy10612 57 IYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGH-WAHY---SENMFSFDVENETYALKPMNCPGHCLIFDHRVRS 131 (426)
Q Consensus 57 ~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l-~~~sg~-~~~~---~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~ 131 (426)
-.+++.+.+++.|...||+|+.+|.+.+... |...+- .+.. ..+.+.+. +..+||+...+.+.+.++.+.
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~---e~~vLRtsl~p~ll~~l~~N~-- 128 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT---DEILMRTHTSPVQARTMEKRN-- 128 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS---SSEEECSSSHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc---CcceeeccCHHHHHHHHHhcC--
Confidence 3567888889999999999999998877532 232210 0000 01134442 567999999999999887654
Q ss_pred cCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHc-CCe
Q psy10612 132 WRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF-GFT 198 (426)
Q Consensus 132 ~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~l-gi~ 198 (426)
.+.|+|+|++|+|||++.... -...||+|.++...|.+-. -..+ ...+..+++.| |++
T Consensus 129 -~~~~~riFEiG~Vfr~d~~d~----~h~~Ef~~Le~~~~g~~~d-f~dl---Kg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 129 -GQGPVKIICPGKVYRRDSDDA----THSHQFTQIEGLVVDKNIK-MSDL---KGTLELVAKKLFGAD 187 (294)
T ss_dssp -TCSCEEEEEEEEEECCCCCBT----TBCSEEEEEEEEEEESSCC-HHHH---HHHHHHHHHHHHCTT
T ss_pred -CCCCccEEEEcCEEecCCCCC----CCCChhhEEEEEEECCCCC-HHHH---HHHHHHHHHHHhCCC
Confidence 356999999999999764222 2446999999999986321 1222 23347777777 864
No 64
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.91 E-value=6.8e-05 Score=76.58 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=59.5
Q ss_pred ceEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCccchHHHHHHHHHH
Q psy10612 109 ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDF 187 (426)
Q Consensus 109 ~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~ 187 (426)
+..+||+...+++...+..+. +..+.|+|+|++|+|||.+.. .. .+.+||+|.++-+.|.+- ...++. ..
T Consensus 191 e~svLRTsLlPGLL~~vr~N~-~r~~~pvrlFEiGrVFr~D~~~d~----th~~ef~qLaglv~G~~v-dF~DLK---G~ 261 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLI-KKRKLPLKLFSIDRCFRREQREDR----SHLMSYHSASCVVVGEDV-SVDDGK---VV 261 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTT-TTSCSSEEEEEEEEECCCCSSCSS----SCCSCEEEEEEEEECTTC-CHHHHH---HH
T ss_pred cccccccccchhHHHHHHHHH-hcCCCCeEEEEEeeEEecCCcccC----cCCCcceEEEEEEECCCC-CHHHHH---HH
Confidence 357899999998887776543 334679999999999997653 33 356899999999999642 223333 34
Q ss_pred HHHHHHHcCCe
Q psy10612 188 LRNVYSIFGFT 198 (426)
Q Consensus 188 ~~~il~~lgi~ 198 (426)
+..+++.||+.
T Consensus 262 Le~ll~~LGi~ 272 (549)
T 2du7_A 262 AEGLLAQFGFT 272 (549)
T ss_dssp HHHHHGGGTCC
T ss_pred HHHHHHHcCCC
Confidence 48888888873
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.76 E-value=0.00015 Score=74.65 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=60.5
Q ss_pred eEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHH
Q psy10612 110 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 188 (426)
Q Consensus 110 ~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~ 188 (426)
..+||+...+++...+..+. +..+.|+|+|++|+|||.+.. .. ....||+|.++-+.|.+-. -..+ ...+
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDa----th~~Ef~qLeGlv~G~~vd-F~DL---KGvL 269 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGVD-INDG---KAIA 269 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTCC-HHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCccccc----cCCCcceEEEEEEECCCCC-HHHH---HHHH
Confidence 56899999998877766543 334679999999999997653 32 3458999999999986321 1222 3445
Q ss_pred HHHHHHcCCe-EEEEE
Q psy10612 189 RNVYSIFGFT-FNLRL 203 (426)
Q Consensus 189 ~~il~~lgi~-~~i~~ 203 (426)
..+++.||+. +++.-
T Consensus 270 E~LL~~LGi~~vrfrp 285 (648)
T 2odr_B 270 EGLLSQFGFTNFKFIP 285 (648)
T ss_dssp HHHHHTTTCCCEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8888889984 55543
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.75 E-value=0.00016 Score=74.63 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=60.5
Q ss_pred eEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHH
Q psy10612 110 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 188 (426)
Q Consensus 110 ~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~ 188 (426)
..+||+...+++...+..+. +..+.|+|+|++|+|||.+.. .. ....||+|.++-+.|.+-. -..+ ...+
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~-~R~~~pvRLFEIGrVFR~D~~lDa----th~~Ef~qLeGlv~G~~vd-F~DL---KGvL 269 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGVD-INDG---KAIA 269 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTCC-HHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCccccc----cCCCcceEEEEEEECCCCC-HHHH---HHHH
Confidence 56899999998877766543 334679999999999997653 32 3458999999999986321 1222 3445
Q ss_pred HHHHHHcCCe-EEEEE
Q psy10612 189 RNVYSIFGFT-FNLRL 203 (426)
Q Consensus 189 ~~il~~lgi~-~~i~~ 203 (426)
..+++.||+. +++.-
T Consensus 270 E~LL~~LGi~~vrfrp 285 (665)
T 2odr_A 270 EGLLSQFGFTNFKFIP 285 (665)
T ss_dssp HHHHHTTTCCCEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8888889984 55543
No 67
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.74 E-value=0.00017 Score=74.61 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=61.0
Q ss_pred eEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHH
Q psy10612 110 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 188 (426)
Q Consensus 110 ~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~ 188 (426)
..+||+...+++...++.+. +..+.|+|+|++|+|||.+.. .. ....||+|.++-+.|.+-. -..+ ...+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDa----th~~Ef~qLeGlv~G~~vD-F~DL---KGvL 269 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGVD-INDG---KAIA 269 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTCC-HHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEeccEEecCccccc----cCCCcceEEEEEEECCCCC-HHHH---HHHH
Confidence 56899999998877766543 334679999999999997653 32 3458999999999986321 1222 3445
Q ss_pred HHHHHHcCCe-EEEEEe
Q psy10612 189 RNVYSIFGFT-FNLRLS 204 (426)
Q Consensus 189 ~~il~~lgi~-~~i~~~ 204 (426)
..+++.||+. +++.-+
T Consensus 270 E~LL~~LGi~~vrfrps 286 (685)
T 2odr_D 270 EGLLSQFGFTNFKFIPD 286 (685)
T ss_dssp HHHHHTTTCCCEEEEEC
T ss_pred HHHHHHcCCCeEEEEEC
Confidence 8888888984 555543
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.74 E-value=0.00018 Score=74.53 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=60.6
Q ss_pred eEEEcCCCcHHHHHHHhhhhcCcCCCCceeeeeccccccCCC-CCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHH
Q psy10612 110 TYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELS-GALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 188 (426)
Q Consensus 110 ~~~LrP~~t~~i~~~~~~~~~~~~~lP~k~~~~g~~fR~E~~-~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~ 188 (426)
..+||+...+++...++.+. +..+.|+|+|++|+|||.+.. .. ....||+|.++-+.|.+-. -..+ ...+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDa----th~~EfhqLeGlv~G~~vD-F~DL---KGvL 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDK----SHLMTYHSASCAIAGEGVD-INDG---KAIA 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCS----SCCSEEEEEEEEEECTTCC-HHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEEeeEEccCccccc----cCCCcceEEEEEEECCCCC-HHHH---HHHH
Confidence 46899999998877766543 334679999999999997653 32 3458999999999986321 1222 3445
Q ss_pred HHHHHHcCCe-EEEEE
Q psy10612 189 RNVYSIFGFT-FNLRL 203 (426)
Q Consensus 189 ~~il~~lgi~-~~i~~ 203 (426)
..+++.||+. +++.-
T Consensus 270 E~LL~~LGi~~vrfrp 285 (701)
T 2odr_C 270 EGLLSQFGFTNFKFIP 285 (701)
T ss_dssp HHHHHTTTCCCEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8888888983 55543
No 69
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.71 E-value=9.2e-05 Score=71.42 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchh-hHhHh----cccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhc
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVK-LWQTS----GHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVR 130 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~-l~~~s----g~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~ 130 (426)
.-.+.+.+.+++.|...||+++.+|.+++.. -|..- .|-..-..+.|.+ ++..+||+...+...+.+..
T Consensus 107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i---~e~~vLRThtsp~~lr~l~~--- 180 (327)
T 3pco_A 107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF---DTTRLLRTQTSGVQIRTMKA--- 180 (327)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS---SSSCEECSCTHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe---CCCceecccCCHHHHHHHHh---
Confidence 3456688888999999999999999886432 23221 1100000123444 24679999998888887743
Q ss_pred CcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHc
Q psy10612 131 SWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 195 (426)
Q Consensus 131 ~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~l 195 (426)
.+.|+|+|.+|+|||.+. .. ..+.+|+|.+..+.+.+- .-.++..+ ...+++.|
T Consensus 181 --~~~pirifeiGrVyR~d~-d~----th~p~fhqlegl~v~~~v-~f~dLKg~---Le~~l~~l 234 (327)
T 3pco_A 181 --QQPPIRIIAPGRVYRNDY-DQ----THTPMFHQMEGLIVDTNI-SFTNLKGT---LHDFLRNF 234 (327)
T ss_dssp --CCSSCCBCCEECCBCSCC-BT----TBCSBCCEEEEEEEETTC-CHHHHHHH---HHHHHHHH
T ss_pred --CCCCeeEEeeccEEecCC-Cc----ccCCcccEEEEEEECCCC-CHHHHHHH---HHHHHHHH
Confidence 356999999999999984 33 467789999887776432 22333333 35666666
No 70
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.55 E-value=0.0005 Score=71.90 Aligned_cols=130 Identities=13% Similarity=0.169 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhh-HhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcCC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKL-WQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRE 134 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l-~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~~ 134 (426)
.+++.+.+++.|...||+|+.|+.|...+. +..-+..+. ..+.+++... .+.-+||++.-+++.+.++.+.. ++
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~--~~ 469 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRK--MP 469 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTT--SC
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhc--CC
Confidence 456688889999999999999999998773 333221100 1233444332 34468999999999998876543 34
Q ss_pred CCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCccchHHHHHHHHHHHHHHHHHcCCe
Q psy10612 135 LPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 135 lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~~~~~e~~~~~~~~~~il~~lgi~ 198 (426)
.|+|+|++|+|||.+.... ...+|+.|..+-+.|.... -.++ ......+++.||++
T Consensus 470 ~~vrlFEiG~Vf~~d~~~~----~~~~e~~~la~~~~g~~~~-f~~l---kg~le~ll~~lg~~ 525 (589)
T 3l4g_B 470 LPLKLFEISDIVIKDSNTD----VGAKNYRHLCAVYYNKNPG-FEII---HGLLDRIMQLLDVP 525 (589)
T ss_dssp SCEEEEEEEEEEEECTTST----TSEEEEEEEEEEEESSSCC-HHHH---HHHHHHHHHHTTCC
T ss_pred CceEEEEeeeEEecCCccc----cCCccccEEEEEEECCCCC-HHHH---HHHHHHHHHHcCCC
Confidence 6999999999999765432 3467899988877775421 2222 23347888999885
No 71
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=97.52 E-value=0.0011 Score=60.03 Aligned_cols=143 Identities=10% Similarity=0.148 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcCCC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWREL 135 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~~l 135 (426)
.+++.+.+++.+...||+|+.|-.|...+.+..-+..+ .++...+... .+.-+||++.-+++...++.+.. .+.-
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~-r~~~ 82 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNAN-RKNA 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccC--cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhc-CCCC
Confidence 35678888999999999999999999988765432111 1234445433 45678999999999998876543 2344
Q ss_pred CceeeeeccccccCCCCC--CCCCccceeEeEcCeeEecCcc-------chHHHHHHHHHHHHHHHHHcCCe---EEEEE
Q psy10612 136 PLRMADFGVLHRNELSGA--LTGLTRVRRFQQDDAHIFCTVE-------QIGDEIVGALDFLRNVYSIFGFT---FNLRL 203 (426)
Q Consensus 136 P~k~~~~g~~fR~E~~~~--~~Gl~R~REF~q~d~~~fg~~~-------~~~~e~~~~~~~~~~il~~lgi~---~~i~~ 203 (426)
++|+|++|+||+.+.... -..+...+|..+..+-+-|... .....+-.+...+..++..||++ +.+.-
T Consensus 83 ~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~~ 162 (213)
T 3ig2_A 83 DLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVGN 162 (213)
T ss_dssp CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEEE
T ss_pred CeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEee
Confidence 699999999999654210 0001235788888777777421 11233444556678999999986 55543
No 72
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=97.47 E-value=0.0012 Score=59.88 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcCCC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWREL 135 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~~l 135 (426)
.+++.+.+++.+...||+|+.|-.|.+.+.+..-+..+ .++..++... .+.-+||++.-+++...++.+.. ...-
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~-r~~~ 82 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHP--REMAVELMNPLSQELNCMRQTLLFGGLETLSHNLR-RKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSC--GGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHT-TTCS
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccC--cCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHc-CCCC
Confidence 45788889999999999999999999988765432111 1233344332 45678999999999998876643 2333
Q ss_pred CceeeeeccccccCCCCC--CCCCccceeEeEcCeeEecCcc-ch------HHHHHHHHHHHHHHHHHcCCe---EEEEE
Q psy10612 136 PLRMADFGVLHRNELSGA--LTGLTRVRRFQQDDAHIFCTVE-QI------GDEIVGALDFLRNVYSIFGFT---FNLRL 203 (426)
Q Consensus 136 P~k~~~~g~~fR~E~~~~--~~Gl~R~REF~q~d~~~fg~~~-~~------~~e~~~~~~~~~~il~~lgi~---~~i~~ 203 (426)
++|+|++|+||+.+.... -..+...+|..+..+-+-|... .. ...+-.+...+..++..||++ +.+.-
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~~ 162 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKT 162 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEee
Confidence 599999999999654210 0011345788888887777531 10 111233345568999999986 55443
No 73
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.35 E-value=0.001 Score=71.94 Aligned_cols=136 Identities=9% Similarity=0.035 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhccccccccc-ceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCc
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSEN-MFSFDVE--NETYALKPMNCPGHCLIFDHRVRSW 132 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e-~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~ 132 (426)
.-.+++.+.+++.+...||+|+.|..|...+.+..-+ . ..+ .+.+... .+.-+||++..+++.+.++.+.. .
T Consensus 493 ~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~-r 567 (795)
T 2rhq_B 493 TDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVA-R 567 (795)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhc-C
Confidence 3456788889999999999999999998887552211 1 123 3455433 34568999999999998876543 3
Q ss_pred CCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-chH------HHHHHHHHHHHHHHHHcCCeEEE
Q psy10612 133 RELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QIG------DEIVGALDFLRNVYSIFGFTFNL 201 (426)
Q Consensus 133 ~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~~------~e~~~~~~~~~~il~~lgi~~~i 201 (426)
.+.|+|+|++|+|||.+.... .. +||+|..+-+.|... ... ..+..+...+..+++.||+++++
T Consensus 568 ~~~~vrlFEiG~Vf~~d~~~~----~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~~ 638 (795)
T 2rhq_B 568 KNKDVRLYEIGRVFFGNGEGE----LP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSY 638 (795)
T ss_dssp TCCCEEEEEEEEEEECCCTTS----CC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEEeeEEecCCccc----Cc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 467999999999999543221 23 899999988888642 110 12333445568888888986433
No 74
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=96.78 E-value=0.0041 Score=66.99 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 56 ~~~~~i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
.-.+++.+.+++.+...||+|+.|-.|...+.+..-+ . ..+-+.+... .+.-+||++..+++.+.++.+.. ..
T Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~---~-~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~-r~ 563 (785)
T 1b7y_B 489 EAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFR---L-DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLD-LD 563 (785)
T ss_dssp THHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTT---C-CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHH-HS
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcC---C-CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhh-cC
Confidence 3466788889999999999999988888887553211 1 1233445433 34568999999999998876542 33
Q ss_pred -CCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-ch-----HHHHHHHHHHHHHHHHHcCCeEEE
Q psy10612 134 -ELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-QI-----GDEIVGALDFLRNVYSIFGFTFNL 201 (426)
Q Consensus 134 -~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~~-----~~e~~~~~~~~~~il~~lgi~~~i 201 (426)
+.|+|+|++|+||| + +||.|..+-+.|... .. ...+..+...+..+++.||+++++
T Consensus 564 ~~~~vrlFEiG~Vf~-~-----------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~~~~ 626 (785)
T 1b7y_B 564 RPERALLFEVGRVFR-E-----------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAFRV 626 (785)
T ss_dssp CCSCEEEEEEEEEES-S-----------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEEeeeec-c-----------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCceEE
Confidence 56999999999999 2 688888888888642 00 011223344558888888875443
No 75
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=96.74 E-value=0.011 Score=59.00 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHc--------CCeEeec-ccccc-hhhHhHhcc-cccc---cccceEeeeCCceEEEcCCCcHHHHH
Q psy10612 58 YNTLVEFIRSEYRKR--------GFQEVVS-PNVYN-VKLWQTSGH-WAHY---SENMFSFDVENETYALKPMNCPGHCL 123 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~--------G~~~i~t-P~l~~-~~l~~~sg~-~~~~---~~e~y~~~d~~~~~~LrP~~t~~i~~ 123 (426)
...+.+.+++.|... ||+++.+ |.++. ..-|..-+. .+.. ..+.|.+ ++..+||...++..++
T Consensus 50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi---~~~~vLRThts~~~~~ 126 (415)
T 3cmq_A 50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL---NRTHMLRAHTSAHQWD 126 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS---SSSEEECSSGGGGHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe---cCCeEEcCCCcHHHHH
Confidence 455666666666655 8999998 55554 344443321 1111 1334545 3568999988888888
Q ss_pred HHhhhhcCcCCCCceeeeeccccccCCCCCCCCCccceeEeEcCeeEe
Q psy10612 124 IFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 171 (426)
Q Consensus 124 ~~~~~~~~~~~lP~k~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~f 171 (426)
++... .| |++.+|.|||.+.... ..+-+|+|.+.-.+
T Consensus 127 ~l~~~------~~-k~~~~G~VyR~D~~da----~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 127 LLHAG------LD-AFLVVGDVYRRDQIDS----QHYPIFHQLEAVRL 163 (415)
T ss_dssp HHHTT------CS-EEEEEEEEECCCCCBT----TBCSEEEEEEEEEE
T ss_pred HHHHC------CC-CEEEeeeEEeccchhh----hhhHHhcCCCcEEE
Confidence 76542 36 9999999999886555 68889998886544
No 76
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=94.29 E-value=0.11 Score=56.08 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCeEeecccccchhhHhHhcccccccccceEeeeC--CceEEEcCCCcHHHHHHHhhhhcCcCCCCce
Q psy10612 61 LVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVE--NETYALKPMNCPGHCLIFDHRVRSWRELPLR 138 (426)
Q Consensus 61 i~~~i~~~~~~~G~~~i~tP~l~~~~l~~~sg~~~~~~~e~y~~~d~--~~~~~LrP~~t~~i~~~~~~~~~~~~~lP~k 138 (426)
..+.+++.+...||+|+.|-.|.+.+.+..-+. .++...+... .+.-+||++.-+++...++.+.. ..+.+++
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~----~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~-r~~~~v~ 568 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHP----GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQN-RQQNRVR 568 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSS----SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHT-SSCCCCE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCC----CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHh-CCCCCcc
Confidence 456678888999999999999999887665431 1233334332 44568999999999998877643 3455799
Q ss_pred eeeeccccccCCCCCCCCCccceeEeEcCeeEecCcc-c------hHHHHHHHHHHHHHHHHHcCC
Q psy10612 139 MADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVE-Q------IGDEIVGALDFLRNVYSIFGF 197 (426)
Q Consensus 139 ~~~~g~~fR~E~~~~~~Gl~R~REF~q~d~~~fg~~~-~------~~~e~~~~~~~~~~il~~lgi 197 (426)
+|++|+||+.+.... ...+|..+..+-+-|... . ....+..+...+..++..||+
T Consensus 569 lFEiG~Vf~~~~~~~----~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 569 IFESGLRFVPDTQAP----LGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEEEECTTSS----TTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred EEEeeeEEecCCCcc----cCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999998654332 245677777766666431 1 011122334455888888886
No 77
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=73.91 E-value=5.7 Score=36.55 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHH
Q psy10612 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAE------------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRN 368 (426)
Q Consensus 301 leRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~------------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~ 368 (426)
.+-++...++ +.|-+|+++|-+. ...+....+.+.|+++||+|.+..+ .-..|++.
T Consensus 104 t~emi~ial~---------~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID---pd~~qI~a 171 (278)
T 3gk0_A 104 TPEMLDIACE---------IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID---PDEAQIRA 171 (278)
T ss_dssp SHHHHHHHHH---------HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC---SCHHHHHH
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHH
Confidence 4556665555 3688999999753 2356677889999999999987763 23469999
Q ss_pred HHHhCCcEEE
Q psy10612 369 AQISQYNFIM 378 (426)
Q Consensus 369 A~~~gip~~i 378 (426)
|.+.|+|++=
T Consensus 172 A~~~GAd~IE 181 (278)
T 3gk0_A 172 AHETGAPVIE 181 (278)
T ss_dssp HHHHTCSEEE
T ss_pred HHHhCcCEEE
Confidence 9999999764
No 78
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=73.57 E-value=6.6 Score=35.48 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC------------ChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHH
Q psy10612 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAE------------PFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRN 368 (426)
Q Consensus 301 leRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~------------~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~ 368 (426)
.+-++...++ +.|-+|+++|-+. ...+....+.+.|+++||+|.+..+. -..|++.
T Consensus 76 t~emi~ia~~---------~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDp---d~~qi~a 143 (243)
T 1m5w_A 76 TEEMLAIAVE---------TKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA---DEEQIKA 143 (243)
T ss_dssp SHHHHHHHHH---------HCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECS---CHHHHHH
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHH
Confidence 4456655555 3688999999753 24577788999999999999877632 3479999
Q ss_pred HHHhCCcEEEE
Q psy10612 369 AQISQYNFIMV 379 (426)
Q Consensus 369 A~~~gip~~ii 379 (426)
|.+.|+|++=+
T Consensus 144 A~~~GA~~IEL 154 (243)
T 1m5w_A 144 AAEVGAPFIEI 154 (243)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHhCcCEEEE
Confidence 99999997643
No 79
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=67.47 E-value=5.5 Score=36.36 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC----------hHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHH
Q psy10612 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAEP----------FNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQ 370 (426)
Q Consensus 301 leRll~~l~e~~g~~~p~~~ap~~V~Vi~~~~~----------~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~ 370 (426)
.+-++...++ +.|.+|+++|-+.+ ..+....+.+.|+++||+|-+..+ .-..|++.|.
T Consensus 75 t~emi~ial~---------~kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID---pd~~qi~aA~ 142 (260)
T 3o6c_A 75 NDEILNLALK---------LKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN---PSLEDIEKSK 142 (260)
T ss_dssp CHHHHHHHHH---------HCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC---SCHHHHHHHH
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHH
Confidence 4556665555 36889999996542 244556788899999999987763 2346999999
Q ss_pred HhCCcEEE
Q psy10612 371 ISQYNFIM 378 (426)
Q Consensus 371 ~~gip~~i 378 (426)
+.|++++=
T Consensus 143 ~~GAd~IE 150 (260)
T 3o6c_A 143 ILKAQFIE 150 (260)
T ss_dssp HTTCSEEE
T ss_pred HhCCCEEE
Confidence 99999764
No 80
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=49.14 E-value=5.5 Score=38.73 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=9.6
Q ss_pred chHHHHHHHHHh
Q psy10612 300 SVERMVAILTES 311 (426)
Q Consensus 300 gleRll~~l~e~ 311 (426)
|+|||+.+|.++
T Consensus 355 glerL~~~l~~~ 366 (373)
T 3rac_A 355 EVERVMAVLEAQ 366 (373)
T ss_dssp EHHHHHHHHHHH
T ss_pred EHHHHHHHHHhc
Confidence 599999888665
No 81
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=40.81 E-value=8.9 Score=36.75 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=8.7
Q ss_pred chHHHHHHHHHh
Q psy10612 300 SVERMVAILTES 311 (426)
Q Consensus 300 gleRll~~l~e~ 311 (426)
|+|||+.+|.++
T Consensus 326 glerl~~~l~~~ 337 (344)
T 1z7m_A 326 HMDTILKALERQ 337 (344)
T ss_dssp EHHHHHHHHHHH
T ss_pred EHHHHHHHHHhc
Confidence 588888877553
No 82
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=37.65 E-value=24 Score=29.22 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=41.5
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCC---CCCCHHHHHHHHHHhCCcE-EEEEec
Q psy10612 321 SPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLD---SSDTLNKKIRNAQISQYNF-IMVVGE 382 (426)
Q Consensus 321 ap~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~---~~~~lgkk~~~A~~~gip~-~iiiG~ 382 (426)
..++|+|---+.+....+..|+..|++.|++|-+|.+ .+..+...+..|-. +..+ ++++.+
T Consensus 19 ~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~-~s~~~i~v~S~ 83 (154)
T 3h16_A 19 PPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLG-SSRFGIVVLST 83 (154)
T ss_dssp CSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHT-SEEEEEEEEEH
T ss_pred CCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHH-hCcEEEEEeCc
Confidence 4589998877665435688999999999999998862 24456666666533 3444 445544
No 83
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=37.40 E-value=43 Score=28.15 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=45.2
Q ss_pred CCCCCCceEEEEeCCCCh------HHHHHHHHHHHHHCCCeEE----EcCCCCCCHHHHHHHHHHhCCcEEEEEecCc
Q psy10612 317 PFWISPRQGIVIPVAEPF------NEYADQVKNKIFAAGFMCD----ADLDSSDTLNKKIRNAQISQYNFIMVVGEKE 384 (426)
Q Consensus 317 p~~~ap~~V~Vi~~~~~~------~~~a~~ia~~Lr~~Gi~v~----~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E 384 (426)
|..+.+..|.|+.++++. ..-...|+..|++.|+.+. +.| . ..+.+.++.|-..++..+|+-|---
T Consensus 2 ~~~~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D-d-~~i~~al~~a~~~~~DlVittGG~s 77 (164)
T 3pzy_A 2 PGSMTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD-G-SPVGEALRKAIDDDVDVILTSGGTG 77 (164)
T ss_dssp -----CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS-S-HHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC-H-HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 334556789999988743 2235578999999998763 445 3 6688888888656799999988543
No 84
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=37.38 E-value=97 Score=26.31 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCC-------CHHHHHHHHHHhCCcEEEEEecC
Q psy10612 334 FNEYADQVKNKIFAAGFMCDADLDSSD-------TLNKKIRNAQISQYNFIMVVGEK 383 (426)
Q Consensus 334 ~~~~a~~ia~~Lr~~Gi~v~~d~~~~~-------~lgkk~~~A~~~gip~~iiiG~~ 383 (426)
.++.|.++.+.|++.|+.|.+...++. ++..|.+.|+..++.+.|-|=-+
T Consensus 31 ~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~N 87 (180)
T 3qay_A 31 NKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLN 87 (180)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeC
Confidence 457788899999999999632211121 38999999999999988877544
No 85
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=31.00 E-value=1.1e+02 Score=25.68 Aligned_cols=64 Identities=9% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCceEEEEeCCCCh----HHHHHHHHHHHHHCCCeEE----EcCCCCCCHHHHHHHHHHh-CCcEEEEEecCcc
Q psy10612 321 SPRQGIVIPVAEPF----NEYADQVKNKIFAAGFMCD----ADLDSSDTLNKKIRNAQIS-QYNFIMVVGEKEK 385 (426)
Q Consensus 321 ap~~V~Vi~~~~~~----~~~a~~ia~~Lr~~Gi~v~----~d~~~~~~lgkk~~~A~~~-gip~~iiiG~~E~ 385 (426)
.+..|.|++++++. ..-+.-|++.|++.|+.+. +.|+ ...+.+.++.|-.. ++.++|+-|---.
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd-~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN-RYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 45689999988642 3345679999999998764 3342 45688899988765 6999999986543
No 86
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=29.68 E-value=56 Score=27.95 Aligned_cols=46 Identities=2% Similarity=-0.078 Sum_probs=28.0
Q ss_pred CceEEEEeCCCCh-HHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHH
Q psy10612 322 PRQGIVIPVAEPF-NEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRN 368 (426)
Q Consensus 322 p~~V~Vi~~~~~~-~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~ 368 (426)
.++|.|---+++. ...+..|+..|++.||++-+|+ .+...|..+..
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~-~~l~~G~~i~~ 54 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDD-KELENGQRFSP 54 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCC-C----------
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEc-ccccCCCchHH
Confidence 5788887655443 2567889999999999999997 35555555543
No 87
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=26.92 E-value=1.9e+02 Score=25.46 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=52.4
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHHHCCC-eEEEcCCCCCCHHHHHHHHHHhCCcEEEEEecCccCCCeEEEEEccCC
Q psy10612 322 PRQGIVIPVAEPFNEYADQVKNKIFAAGF-MCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNI 398 (426)
Q Consensus 322 p~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi-~v~~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~~~~~v~vk~~~~~ 398 (426)
..+|.|... .........++++|+.. + .+....|.+.++++-.+.|...|+.-+++|+++-...+.+.+-+.-.|
T Consensus 33 ~pKvLITTS-r~pS~r~r~fakeL~~~-lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G 108 (217)
T 2cxh_A 33 GYRILVTTS-RRPSPRIRSFVKDLSAT-IPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP 108 (217)
T ss_dssp CCEEEEEES-SSCCHHHHHHHHHHHTT-STTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred CCeEEEEcC-CCCCHHHHHHHHHHHHH-CCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence 345666544 44446677888888874 5 355655546688888899999999999999887655556666666544
No 88
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=26.60 E-value=83 Score=27.03 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=46.9
Q ss_pred CCceEEEEeCCCCh-----HHHHHHHHHHHHHCCCeEE----EcCCCCCCHHHHHHHHHHhCCcEEEEEecCcc
Q psy10612 321 SPRQGIVIPVAEPF-----NEYADQVKNKIFAAGFMCD----ADLDSSDTLNKKIRNAQISQYNFIMVVGEKEK 385 (426)
Q Consensus 321 ap~~V~Vi~~~~~~-----~~~a~~ia~~Lr~~Gi~v~----~d~~~~~~lgkk~~~A~~~gip~~iiiG~~E~ 385 (426)
.+..|.|++++++. ..-..-|+..|++.|+.+. +.|+ ...+.+.++.|-..++..+|+-|---.
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd-~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD-EVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC-HHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 56789999988643 2346678999999998664 4442 456888898886568999999886543
No 89
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=26.58 E-value=2e+02 Score=24.48 Aligned_cols=61 Identities=8% Similarity=-0.052 Sum_probs=42.6
Q ss_pred eEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCC-CCCCHHHHHHH---HHHhCCcEEEEEecCc
Q psy10612 324 QGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLD-SSDTLNKKIRN---AQISQYNFIMVVGEKE 384 (426)
Q Consensus 324 ~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~-~~~~lgkk~~~---A~~~gip~~iiiG~~E 384 (426)
.|.|+.-++...+.+.+.+..|...|+..++-.- -.+.+.+-.++ |+..|++.+|.+...+
T Consensus 9 ~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~a 73 (174)
T 3lp6_A 9 RVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGA 73 (174)
T ss_dssp SEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESS
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCch
Confidence 6888887778889999999999999998765421 23445544444 5668898666554443
No 90
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=26.23 E-value=1.9e+02 Score=24.51 Aligned_cols=62 Identities=6% Similarity=-0.009 Sum_probs=42.8
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCC-CCCCHHHHHHH---HHHhCCcEEEEEecCc
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLD-SSDTLNKKIRN---AQISQYNFIMVVGEKE 384 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~-~~~~lgkk~~~---A~~~gip~~iiiG~~E 384 (426)
..|.|+.-++...+.+.+.+..|...|+..++-.- -.+.+.+-.++ |+..|++.+|.+...+
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~a 72 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLA 72 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChh
Confidence 36888877778889999999999999998775431 23455555555 4457888666555443
No 91
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=25.46 E-value=73 Score=25.42 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=29.2
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcC
Q psy10612 322 PRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADL 356 (426)
Q Consensus 322 p~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~ 356 (426)
.++++|.-.+.....||.++++.|..+|..|.+-.
T Consensus 61 ~~~l~v~etdy~L~~YA~~Lc~RL~~AG~~V~lk~ 95 (139)
T 3noh_A 61 SFDIYVSETDYALIRYADSLCERLNDAGADVQIKQ 95 (139)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eeEEEEeccchHHHHHHHHHHHHHHhcCCCceecc
Confidence 35778876666788999999999999999998763
No 92
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=25.45 E-value=1.6e+02 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHC-CCeEEEcCC--CCCCHHHHHHHHHHhCCcEEEEEe
Q psy10612 335 NEYADQVKNKIFAA-GFMCDADLD--SSDTLNKKIRNAQISQYNFIMVVG 381 (426)
Q Consensus 335 ~~~a~~ia~~Lr~~-Gi~v~~d~~--~~~~lgkk~~~A~~~gip~~iiiG 381 (426)
++.|.++.+.|++. |++|.+.-. ...++..|.+.|+..++.+.|-|=
T Consensus 31 l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH 80 (179)
T 1jwq_A 31 LAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIH 80 (179)
T ss_dssp HHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEc
Confidence 56788888999999 999986521 234799999999999999888774
No 93
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=25.20 E-value=1.2e+02 Score=26.86 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=53.9
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHH----hC--CcEEEEEecCccCCCeEEEEEcc
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQI----SQ--YNFIMVVGEKEKSSNTVNVRTRD 396 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A~~----~g--ip~~iiiG~~E~~~~~v~vk~~~ 396 (426)
+.|+.|..+ ......+.++...-..+.+..|. .+..+++.+--... .| +|.+.||+ ++|+|.-+...
T Consensus 83 v~VvgIS~D--s~~~~~~f~~~~gl~~fplLsD~-~~~~vak~yGv~~~~~~~~G~~~p~tfvID----~dG~I~~~~~~ 155 (224)
T 3keb_A 83 LKLIVITVD--SPSSLARARHEHGLPNIALLSTL-RGRDFHKRYGVLITEYPLSGYTSPAIILAD----AANVVHYSERL 155 (224)
T ss_dssp SEEEEEESS--CHHHHHHHHHHHCCTTCEEEEST-TCTTHHHHTTCBCCSTTSTTCBCCEEEEEC----TTCBEEEEEEC
T ss_pred CEEEEEECC--CHHHHHHHHHHcCCCCceEEEcC-CchHHHHHhCCccccccccCCccCEEEEEc----CCCEEEEEEec
Confidence 455555543 33344445554432246777775 24678777643211 22 68899997 45888887766
Q ss_pred CCeeeeecHHHHHHHHHHHHhh
Q psy10612 397 NIVHGEFSVDDVITRFGKLKEN 418 (426)
Q Consensus 397 ~~~q~~v~~~el~~~i~~~~~~ 418 (426)
..-....+.+++++.|+.+...
T Consensus 156 ~~~~~~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 156 ANTRDFFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp SBTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhhhc
Confidence 5544456788888888766543
No 94
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=23.77 E-value=3.3e+02 Score=22.91 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=42.6
Q ss_pred eEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCC-CCCCHHHHHHHHH---HhCCcEEEEEecCc
Q psy10612 324 QGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLD-SSDTLNKKIRNAQ---ISQYNFIMVVGEKE 384 (426)
Q Consensus 324 ~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~-~~~~lgkk~~~A~---~~gip~~iiiG~~E 384 (426)
.|.|+.-++...+.+.+.+..|...|+..++-.- -.+...+-+++++ ..|+..+|.+...+
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a 71 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGA 71 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 5888877778889999999999999998775431 2345666666654 35777666555443
No 95
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.36 E-value=1.4e+02 Score=24.92 Aligned_cols=63 Identities=6% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCceEEEEeCCCCh----HHHHHHHHHHHHHCCCeEE----EcCCCCCCHHHHHHHHHH-hCCcEEEEEecCc
Q psy10612 321 SPRQGIVIPVAEPF----NEYADQVKNKIFAAGFMCD----ADLDSSDTLNKKIRNAQI-SQYNFIMVVGEKE 384 (426)
Q Consensus 321 ap~~V~Vi~~~~~~----~~~a~~ia~~Lr~~Gi~v~----~d~~~~~~lgkk~~~A~~-~gip~~iiiG~~E 384 (426)
.+..|.|+.++++. ..-+.-|++.|++.|+.+. +.|+ ...+.+.++.|-. .++.++|+-|---
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD-KESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS-HHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 45689999988743 3345678999999998663 3332 4568888888865 3789999998653
No 96
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=22.33 E-value=1.2e+02 Score=25.64 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=45.1
Q ss_pred CCceEEEEeCCCCh-----------HHHHHHHHHHHHHCCCeEE----EcCCCCCCHHHHHHHHHHh-CCcEEEEEecCc
Q psy10612 321 SPRQGIVIPVAEPF-----------NEYADQVKNKIFAAGFMCD----ADLDSSDTLNKKIRNAQIS-QYNFIMVVGEKE 384 (426)
Q Consensus 321 ap~~V~Vi~~~~~~-----------~~~a~~ia~~Lr~~Gi~v~----~d~~~~~~lgkk~~~A~~~-gip~~iiiG~~E 384 (426)
.+..|.|+.++++. ..-+.-|+..|++.|+.+. +.|+ ...+.+.++.|-.. ++..+|+-|---
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd-~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD-KIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 45689999988633 2235568999999998764 3342 45688889888654 689999988643
No 97
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=20.79 E-value=1e+02 Score=32.58 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccccchh----hHhHhcccccccccceEeeeCCceEEEcCCCcHHHHHHHhhhhcCcC
Q psy10612 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVK----LWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR 133 (426)
Q Consensus 58 ~~~i~~~i~~~~~~~G~~~i~tP~l~~~~----l~~~sg~~~~~~~e~y~~~d~~~~~~LrP~~t~~i~~~~~~~~~~~~ 133 (426)
.+.|.+.+.+.|++.|+..+....+.|.. +|..+ -|..|+ | ++.. ....
T Consensus 62 ~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~a--------gm~~fk---------p--------~~~~--g~~~ 114 (739)
T 2ztg_A 62 LDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIA--------SIADFQ---------P--------FVTS--GVAP 114 (739)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCS--------GGGGGT---------T--------TTTT--SSSC
T ss_pred HHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeec--------ChhhCc---------H--------hHhC--CCCC
Confidence 45677777788889999999988887643 11111 122221 1 1110 0111
Q ss_pred CCCceeeeeccccccC---CCCCCCCCccceeE-eEcCeeEecCccc---hHHHHHHHHHHHHHHHHHcCCe
Q psy10612 134 ELPLRMADFGVLHRNE---LSGALTGLTRVRRF-QQDDAHIFCTVEQ---IGDEIVGALDFLRNVYSIFGFT 198 (426)
Q Consensus 134 ~lP~k~~~~g~~fR~E---~~~~~~Gl~R~REF-~q~d~~~fg~~~~---~~~e~~~~~~~~~~il~~lgi~ 198 (426)
.-+-++...++|-|-. ..++ ..|-+.| .|.+-.+||.++. --.|.+ ++++++|+.|||+
T Consensus 115 p~~~~~~~~Q~ciR~~D~envg~---t~rH~tfFeMlgn~sFg~~~~~dYfK~eai---~~~~e~l~~~g~~ 180 (739)
T 2ztg_A 115 PPANPLTISQPCIRLDDLDSVGR---TGRHLTLFEMMAHHAFNYPGKEIYWKNETV---AYCTELLNELGVK 180 (739)
T ss_dssp CSSSSEEEEEEEECGGGGGGTTT---SSSCCSEEEEEEEEEEEBTTBCSCCHHHHH---HHHHHHHHHHTCC
T ss_pred CCCCCcccccccccCcccccCCC---CCcchhhhhccCccccCCCccccchHHHHH---HHHHHHHHHhCCC
Confidence 2246788889999942 1221 1466666 6888889996532 234443 5569999779996
No 98
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.76 E-value=3.7e+02 Score=22.74 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=41.1
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCC-CCCCHHHHHHHHH---HhCCcEEEEEe
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLD-SSDTLNKKIRNAQ---ISQYNFIMVVG 381 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~-~~~~lgkk~~~A~---~~gip~~iiiG 381 (426)
.+|.|+.-++...+.+.+.+..|+..|+..++..- -.+.+.+-++++. ..|+..+|.+-
T Consensus 13 P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~A 75 (173)
T 4grd_A 13 PLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGA 75 (173)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred CeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEec
Confidence 36888887788889999999999999988765431 2345555555544 46888655443
No 99
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=20.73 E-value=2.3e+02 Score=25.15 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHCC-CeEEEcC--CCCCCHHHHHHHHHHhCCcEEEEEecCc
Q psy10612 334 FNEYADQVKNKIFAAG-FMCDADL--DSSDTLNKKIRNAQISQYNFIMVVGEKE 384 (426)
Q Consensus 334 ~~~~a~~ia~~Lr~~G-i~v~~d~--~~~~~lgkk~~~A~~~gip~~iiiG~~E 384 (426)
.++.|.++.+.|++.| +.|.+.- +...++..|.+.|+..++.+.|-|=-+.
T Consensus 32 ~l~ia~~l~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na 85 (234)
T 3ne8_A 32 TLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADT 85 (234)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCC
Confidence 3567888888898888 9888642 1245799999999999999988886554
No 100
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=20.72 E-value=1.2e+02 Score=24.80 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=44.9
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHH-------HHhCCcEEEEEecCccCCCeEEEEEc
Q psy10612 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNA-------QISQYNFIMVVGEKEKSSNTVNVRTR 395 (426)
Q Consensus 323 ~~V~Vi~~~~~~~~~a~~ia~~Lr~~Gi~v~~d~~~~~~lgkk~~~A-------~~~gip~~iiiG~~E~~~~~v~vk~~ 395 (426)
..++.|..+ ..+...+.+++. ...+.+..|. +.++.+.+.-. ...-.|.+.+|+ ++|+|.-+..
T Consensus 68 v~vv~is~d--~~~~~~~~~~~~-~~~fp~l~D~--~~~v~~~ygv~~~~~~~~~~~~~p~tflID----~~G~I~~~~~ 138 (164)
T 4gqc_A 68 AEVLAISVD--SPWCLKKFKDEN-RLAFNLLSDY--NREVIKLYNVYHEDLKGLKMVAKRAVFIVK----PDGTVAYKWV 138 (164)
T ss_dssp SEEEEEESS--CHHHHHHHHHHT-TCCSEEEECT--TSHHHHHTTCEEEEETTEEEEECCEEEEEC----TTSBEEEEEE
T ss_pred ceEEEecCC--CHHHHHHHHHhc-CcccceeecC--chHHHHHcCCcccccccCcCCeeeEEEEEC----CCCEEEEEEE
Confidence 345444443 333333443332 2345666665 45555544210 001135567886 4578876655
Q ss_pred cCCeeeeecHHHHHHHHHHHHh
Q psy10612 396 DNIVHGEFSVDDVITRFGKLKE 417 (426)
Q Consensus 396 ~~~~q~~v~~~el~~~i~~~~~ 417 (426)
...-..+-+.+++++.++++..
T Consensus 139 ~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 139 TDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH
T ss_pred eCCCCCCCCHHHHHHHHHHHhc
Confidence 4433334578899988887654
Done!