RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10612
(426 letters)
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 693 bits (1790), Expect = 0.0
Identities = 182/423 (43%), Positives = 260/423 (61%), Gaps = 33/423 (7%)
Query: 29 RKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYR-KRGFQEVVSPNVYNVKL 87
+ + Q+LF LSPGS FF GA I+N L+EF++ + + K GF EVV+P +Y L
Sbjct: 38 SMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL 97
Query: 88 WQTSGHWAHYSENMFSF---DVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGV 144
W+ SGHW +Y+++MF D E E Y LKPMNCPGHCLIF + RS+ ELPLR +DF
Sbjct: 98 WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSP 157
Query: 145 LHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYS-IFGFT----- 198
LHRNE SGAL+GLTR+R+F QDD HIFCT Q+ EI +L + VY+ IF F
Sbjct: 158 LHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSG 217
Query: 199 ----FNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITIT 254
+ + STRP+ ++G+L+VWN AE+ L+ L G+PW NPGDGAFYGPK+DI +T
Sbjct: 218 AESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVT 277
Query: 255 DALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAG 314
D L++ HQ ATIQLDFQLP RF+L + ++ RP+MIHRA GS+ER +A+L +S G
Sbjct: 278 DHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEG 337
Query: 315 KWPFWISPRQGIVIPVAEPFNEYADQVKN-----------------KIFAAGFMCDADLD 357
+WPFW++P Q ++IPV + D + F D D
Sbjct: 338 RWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLD-I 396
Query: 358 SSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE-FSVDDVITRFGKLK 416
++ + +I++A + Y+++++VG++E N+R RDN E ++ + +F +L+
Sbjct: 397 RNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELE 456
Query: 417 ENR 419
+N
Sbjct: 457 KNY 459
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 606 bits (1566), Expect = 0.0
Identities = 177/398 (44%), Positives = 255/398 (64%), Gaps = 2/398 (0%)
Query: 29 RKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW 88
RKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + + LW
Sbjct: 4 RKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLW 63
Query: 89 QTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRN 148
+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG HRN
Sbjct: 64 EKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRN 123
Query: 149 ELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207
E SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LSTRP
Sbjct: 124 EPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRP 183
Query: 208 EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 267
EK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC T+Q
Sbjct: 184 EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQ 243
Query: 268 LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIV 327
LDF LP R + +YV E E+ PVMIHRAILGS+ER + ILTE +AG +P W++P Q ++
Sbjct: 244 LDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVI 303
Query: 328 IPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSS 387
+ + + +EY +++ K+ AG ADL ++ + KIR + + +++V G+KE S
Sbjct: 304 MNITDSQSEYVNELTQKLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVES 362
Query: 388 NTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLKSEE 425
V VRTR G V++VI + + +R+LK E
Sbjct: 363 GKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE 400
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 596 bits (1538), Expect = 0.0
Identities = 177/398 (44%), Positives = 255/398 (64%), Gaps = 2/398 (0%)
Query: 29 RKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW 88
RKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + + LW
Sbjct: 245 RKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLW 304
Query: 89 QTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRN 148
+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG HRN
Sbjct: 305 EKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRN 364
Query: 149 ELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207
E SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LSTRP
Sbjct: 365 EPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRP 424
Query: 208 EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 267
EK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC T+Q
Sbjct: 425 EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQ 484
Query: 268 LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIV 327
LDF LP R + +YV E E+ PVMIHRAILGS+ER + ILTE +AG +P W++P Q ++
Sbjct: 485 LDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVI 544
Query: 328 IPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSS 387
+ + + +EY +++ K+ AG ADL ++ + KIR + + +++V G+KE S
Sbjct: 545 MNITDSQSEYVNELTQKLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVES 603
Query: 388 NTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLKSEE 425
V VRTR G V++VI + + +R+LK E
Sbjct: 604 GKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE 641
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 569 bits (1469), Expect = 0.0
Identities = 151/403 (37%), Positives = 235/403 (58%), Gaps = 10/403 (2%)
Query: 29 RKIGREQELFFFH-ELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 87
RKIG+E ELF + G + GA I + +I + G+ V +P + NV L
Sbjct: 244 RKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDL 303
Query: 88 WQTSGHWAHYSENMFSFD--VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 145
++TSGHW HY E+MF E E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G +
Sbjct: 304 YKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTM 363
Query: 146 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 204
HR E SGA++GL RVR +D+HIF +QI +E ++ + +VY FGF ++ RLS
Sbjct: 364 HRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLS 423
Query: 205 TR----PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 260
R EKY + ++WNKAE L+ + + G + E G+ AFYGPK+D+ + A+ +
Sbjct: 424 YRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKE 483
Query: 261 HQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAGKWPFWI 320
+T QLDF LP RF+L Y+ + GE +RPV+IHR ++ ++ER VA LTE G +P W+
Sbjct: 484 ETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWL 543
Query: 321 SPRQGIVIPV-AEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMV 379
+P+Q +IPV + +YA Q+++++ + G D D ++ + KIR AQ+ + + +V
Sbjct: 544 APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSID-DRNEKMGYKIREAQMQKIPYQIV 602
Query: 380 VGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLK 422
VG+KE +N VNVR + D+ I + +
Sbjct: 603 VGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR 645
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 530 bits (1368), Expect = 0.0
Identities = 127/426 (29%), Positives = 193/426 (45%), Gaps = 31/426 (7%)
Query: 29 RKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW 88
R +E F G F G I L E + + +RG+ V +P + + +L+
Sbjct: 25 RVPVFNREFATFT--GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELF 82
Query: 89 QTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWR---ELPLRMADFGVL 145
+ SGH Y NM+ FD+E +A+KPMNCP H L+F + V R LP ++ +FG +
Sbjct: 83 KVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRV 142
Query: 146 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSI---FGFT---F 199
HR E SG++ GL RVR F QDDAHI ++ D + + ++ V G + F
Sbjct: 143 HRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETF 202
Query: 200 NLRLSTRP-----EKYLGELEVWNKAEKQLEASLNSFGEP----WTENPGDGAFYGPKID 250
+RLS ++++G E W AE+ L + + E E G+ AFYGPK+D
Sbjct: 203 KVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLD 262
Query: 251 ITIT---DALKRPHQCATIQLDFQLPIRFNLA-YVNEKGEKNRPVMIHRAILGSVERMVA 306
+ + + Q TIQ DF LP RF L V E+ +IHRA+LGS+ER +
Sbjct: 263 FIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLG 322
Query: 307 ILTESYAGKWPFWISPRQGIVIPVA------EPFNEYADQVKNKIFAAGFMCDADLDSSD 360
+ E G+ PF ++P Q VI V + A + + GF S
Sbjct: 323 VYLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKT 382
Query: 361 TLNKKIRNAQISQYNFIMV-VGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENR 419
L+ +R+ + + + V +G KE ++VR D + EN
Sbjct: 383 GLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENL 442
Query: 420 TLKSEE 425
+EE
Sbjct: 443 AAVAEE 448
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 215 bits (549), Expect = 2e-67
Identities = 46/244 (18%), Positives = 77/244 (31%), Gaps = 39/244 (15%)
Query: 29 RKIGREQELFFFHELSPGSCFFQ------------------TKGAFIYNTLVEFIRSEYR 70
G + E+ F LS F K L E +
Sbjct: 26 NASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLRTVKHRPALLELEEKLAKALH 85
Query: 71 KRGFQEVVSPNVYNVKLW-QTSGHWAHY-SENMFSFDVENETYALKPMNCPGHCLIFDHR 128
++GF +VV+P + + + H +F D L+PM P ++
Sbjct: 86 QQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLD---GKKCLRPMLAPNLYTLWREL 142
Query: 129 VRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL 188
R + P+R+ + G +R E GA + F + T + + + D
Sbjct: 143 ERL-WDKPIRIFEIGTCYRKESQGAQ----HLNEFTMLNLTELGTPLEERHQRL--EDMA 195
Query: 189 RNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFG-----EPW-TENPGDG 242
R V G L T G + + + LE + + G E W +P G
Sbjct: 196 RWVLEAAGIR-EFELVTESSVVYG--DTVDVMKGDLELASGAMGPHFLDEKWEIFDPWVG 252
Query: 243 AFYG 246
+G
Sbjct: 253 LGFG 256
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 177 bits (449), Expect = 2e-50
Identities = 50/337 (14%), Positives = 100/337 (29%), Gaps = 61/337 (18%)
Query: 34 EQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEY-RKRGFQEVVSPNVYNVKLWQTSG 92
+E + S G + A I+ T + + E G++E++ P + ++W SG
Sbjct: 210 MKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSG 269
Query: 93 HWAHYSENMFSF-------------------------------DVENETYALKPMNCPGH 121
H ++ + + CP
Sbjct: 270 HAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPF 329
Query: 122 CLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEI 181
+ E+P+++ D SG + G+ RV F + + T E++
Sbjct: 330 WMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKCA 389
Query: 182 VGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGD 241
D ++++ R + ++ + + AE+ + + E
Sbjct: 390 EELHDRYMHIFNDILD-IEWRKARVTPWFMAQEGLLGLAEENTVGTTDY--EAC------ 440
Query: 242 GAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILG-S 300
+ D Q +I D P FN+ + G++ + G
Sbjct: 441 -------LPYRGPDGEWLEFQNVSINGDKY-PKGFNVKL--QSGDE-----LWSGCSGVG 485
Query: 301 VERMVAILTESYA---GKWPFWISPRQGIVIPVAEPF 334
+ER A+ WP R G +P F
Sbjct: 486 LERWAAVFLAQKGLDPANWPEEFRNRVG-EMPKGIRF 521
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 50.6 bits (121), Expect = 3e-07
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 20/168 (11%)
Query: 59 NTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSG--HWAHYSENMFSFDVENETYALKPM 116
L I + RGF E+ SP + ++ + G + S+ +F D + + L+PM
Sbjct: 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVD---KNFCLRPM 136
Query: 117 NCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQ 176
P R+ P+++ + G +R E G + F
Sbjct: 137 LTPNLYNYLRKLDRAL-PDPIKIFEIGPCYRKESDGK----EHLEEFTMLVFWQM----G 187
Query: 177 IGDEIVGALDFLRNVYSIFGFTFNLRLSTR------PEKYLGELEVWN 218
G + + + G F + + + G+LE+ +
Sbjct: 188 SGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHGDLELSS 235
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 50.1 bits (120), Expect = 8e-07
Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 14/186 (7%)
Query: 242 GAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSV 301
G+ Y D + D K L F + + +G+ H+ G
Sbjct: 234 GSEYTVAFDTLMPDG-KTLQIGTVHNLGQTFARTFEIKFETPEGDHEYV---HQTCYGLS 289
Query: 302 ERMVAILTESYAG----KWPFWISPRQGIVIPVA-----EPFNEYADQVKNKIFAAGFMC 352
+R++A + + P ++ Q +++P+ E E ++++++ AAGF
Sbjct: 290 DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRV 349
Query: 353 DADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRF 412
D D +K ++ + +G ++ + RD + +
Sbjct: 350 HLD-DRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETL 408
Query: 413 GKLKEN 418
+L ++
Sbjct: 409 RELMKD 414
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2
function (CIA), structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
c.51.1.1
Length = 130
Score = 46.3 bits (109), Expect = 1e-06
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 321 SPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDAD-LDSSDTLNKKIRNAQISQYNFIMV 379
P VI V + +YA+ V K+ G + D L++ +L++ + + F +V
Sbjct: 7 GPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIV 66
Query: 380 VGEKEKSSNTVNVRTRDNIV--HGEFSVDDVITRFGKLKENRTLKSEE 425
+ ++ + + V H D + + E + E
Sbjct: 67 ITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECRE 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 4e-05
Identities = 67/502 (13%), Positives = 142/502 (28%), Gaps = 168/502 (33%)
Query: 7 SLVLPECGDSNRMMPISF-VLWNRKIGR--------EQELFFFHELSPGSCFFQTKGAFI 57
+ L C + F + W + E +++ P + I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 58 ---YNTLVEFIRSEYRKRGFQE--VVSPNVYNVKLWQ----------TS----------- 91
+++ +R + + ++ +V NV N K W T+
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 92 GHWAHYSENMFS--FDVENETYAL--KPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHR 147
H S + S +E +L K ++C L P R++ R
Sbjct: 284 ATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIR 338
Query: 148 NELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFL-----RNVY---SIFGFTF 199
+ L+ ++ + +++ I +L+ L R ++ S+F
Sbjct: 339 DGLA-------TWDNWKHVN------CDKLTTIIESSLNVLEPAEYRKMFDRLSVF---- 381
Query: 200 NLRLSTR-PEKYLGELEVWNKAEKQ-LEASLNSFGEPWTENPGDGAFYGPKIDITITDAL 257
S P L + W K + +N +
Sbjct: 382 --PPSAHIPTILLSLI--WFDVIKSDVMVVVNKL-------------------HKYSLVE 418
Query: 258 KRPHQCATIQL-DFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAG-- 314
K+P + +TI + L ++ L +N + HR+I+ + Y
Sbjct: 419 KQPKE-STISIPSIYLELKVKL--------ENEYAL-HRSIV-----------DHYNIPK 457
Query: 315 KWPFW-ISPRQG------------IVIPVAEPFNE----YADQ--VKNKIFAAGFMCDAD 355
+ + P I E + D ++ KI +A
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 356 LDSSDTL------------NKKIRNAQISQY-NFIMVVGEKEKSSNTVNVRTRDNIVHGE 402
+TL N ++ +F+ + E N++ +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--------------NLICSK 563
Query: 403 FSVDDVITRFGKLKENRTLKSE 424
++ D++ R + E+ + E
Sbjct: 564 YT--DLL-RIALMAEDEAIFEE 582
Score = 39.5 bits (91), Expect = 0.002
Identities = 59/424 (13%), Positives = 124/424 (29%), Gaps = 116/424 (27%)
Query: 58 YNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYS---ENMFSFDVENETYALK 114
Y L+ I++E R+ + + +L+ + +A Y+ + + L+
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYL-KLRQALLELR 148
Query: 115 P--------MNCPG---HCL----IFDHRVRSWRELPLRMADFGVL-----HRNELSGAL 154
P + G + ++V DF + + N L
Sbjct: 149 PAKNVLIDGV--LGSGKTWVALDVCLSYKV-------QCKMDFKIFWLNLKNCNSPETVL 199
Query: 155 TGLTRV-RRFQQD-------DAHIFCTVEQIGDEI---------VGALDFLRNVYS---I 194
L ++ + + ++I + I E+ L L NV +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 195 FGFTFNLR--LSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDIT 252
F + + L+TR ++ L L+ + + + +D
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-----SLLLKYLDCR 314
Query: 253 ITDALKR------PHQCATIQLDFQ-LPIRF-NLAYVNEKGEKNRPVMIHRAILGSVE-- 302
D L R P + + I + + N +VN +K + I S+
Sbjct: 315 PQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--CDK-----LTTIIESSLNVL 366
Query: 303 ---------RMVAILTESYAGKWP------FWISPRQGIVIPVAEPFNEYA----DQVKN 343
+++ S P W + V+ V ++Y+ ++
Sbjct: 367 EPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 344 KIFAAGFMCD--ADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDN---- 397
I + L++ L++ I + YN K S+ + D
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSI----VDHYNIP-----KTFDSDDLIPPYLDQYFYS 475
Query: 398 -IVH 400
I H
Sbjct: 476 HIGH 479
Score = 36.0 bits (82), Expect = 0.026
Identities = 47/319 (14%), Positives = 79/319 (24%), Gaps = 125/319 (39%)
Query: 3 CRGHSLVLPECGDSNRMMPISFVLWNR----KIGREQELFFFHELSPGSCFFQTKGAFIY 58
+ L +S R ++ W K+ E + L P
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEP------------- 368
Query: 59 NTLVEFIRSEYRKRGFQE-VVSPNVYNVK--------LWQTSGHWAHYSENMFSFDVEN- 108
+EYRK F V P + +W ++ DV
Sbjct: 369 --------AEYRKM-FDRLSVFPP--SAHIPTILLSLIW----------FDVIKSDVMVV 407
Query: 109 ----ETYAL-----KPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLTR 159
Y+L K + + + +++ + LHR+ +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELK--------VKLENEYALHRS----IVDHYNI 455
Query: 160 VRRFQQDD-----------AHI---FCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLST 205
+ F DD +HI +E + R V+ + R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-----MTLFRMVF------LDFR--- 501
Query: 206 RPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPG------DGAFYGPKIDITITDALKR 259
+ LE + W + FY P I D +
Sbjct: 502 -----------F------LEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPK 540
Query: 260 PHQCATIQLDFQLPIRFNL 278
+ LDF I NL
Sbjct: 541 YERLVNAILDFLPKIEENL 559
Score = 32.1 bits (72), Expect = 0.37
Identities = 39/296 (13%), Positives = 89/296 (30%), Gaps = 67/296 (22%)
Query: 165 QDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGEL---------E 215
QD + E+I D I+ + D + +F T + +K++ E+
Sbjct: 39 QDMPKSILSKEEI-DHIIMSKDAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 216 VWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDIT-------ITDALK--RPHQCATI 266
++Q + E D + K +++ + AL RP + I
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 267 Q-----------------LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILT 309
Q + F + ++N N P +L +++++ +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSP----ETVLEMLQKLLYQID 210
Query: 310 ESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFM-CDADLDSSDTLNKKIRN 368
++ + R + + +++ + + + C L + N K N
Sbjct: 211 PNW--------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWN 260
Query: 369 AQISQYNF---IMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTL 421
A +N I++ + S+D E ++L
Sbjct: 261 A----FNLSCKILLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL 306
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.5 bits (96), Expect = 1e-04
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 25/51 (49%)
Query: 221 EKQ----LEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 267
EKQ L+ASL + D A P + A+K AT++
Sbjct: 18 EKQALKKLQASLKLY-AD------DSA---PAL------AIK-----ATME 47
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris}
PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 43.1 bits (102), Expect = 1e-04
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 65 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF-DVENETYALKPMNCPGHCL 123
+R E + G E++ P + LW+ SG + Y M D P N
Sbjct: 77 VREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITE 136
Query: 124 IFDHRVRSWRELPL 137
IF ++S++ LPL
Sbjct: 137 IFRAYIKSYKSLPL 150
Score = 36.9 bits (86), Expect = 0.010
Identities = 31/213 (14%), Positives = 63/213 (29%), Gaps = 26/213 (12%)
Query: 217 WNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQL--DFQLPI 274
+ L + WT I++ F
Sbjct: 252 VPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGT 311
Query: 275 RF----NLAYVNEKGEKNRPVMIHRAILGS----VERMVAILTESY---AG-KWPFWISP 322
++ G GS V R++ + E+ G WP ++P
Sbjct: 312 KYSDSMKANVTGPDGTDAPIHG------GSYGVGVSRLLGAIIEACHDDNGIIWPEAVAP 365
Query: 323 RQGIVIPVA---EPFNEYADQVKNKIFAAGFMCDADLDSSD-TLNKKIRNAQISQYNFIM 378
+ ++ + + DQ+ ++ A G D D +D K A + + +
Sbjct: 366 FRVTILNLKQGDAATDAACDQLYRELSAKGV--DVLYDDTDQRAGAKFATADLIGIPWQI 423
Query: 379 VVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITR 411
VG + + V ++ R + ++ DV+ R
Sbjct: 424 HVGPRGLAEGKVELKRRSDGARENLALADVVAR 456
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 77/468 (16%), Positives = 138/468 (29%), Gaps = 146/468 (31%)
Query: 6 HSLV--LPECGDS---NRMMPI-----SFVLWNRKIGREQELFFFHELSPGSCFFQTKGA 55
H+L L + D+ I + ++ R ++ F + G+ A
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN-------A 154
Query: 56 FIYNTLVEF----IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETY 111
+ F +Y F+E+ L+QT Y + ++
Sbjct: 155 QLV---AIFGGQGNTDDY----FEELR-------DLYQT------YHVLVGDL-IKFSAE 193
Query: 112 ALK-----PMNCPGHC-LIFDHRVRSWRELPLRMADFGVLHRNELSGALTGLT------- 158
L ++ + + W E P D L +S L G+
Sbjct: 194 TLSELIRTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 159 --RVRRFQQDD-AHIFCTVEQIGDEIVGAL---------DFLRNVYSIFGFTF--NLR-L 203
++ F + +V A+ F +V F +R
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 204 STRPEKYLGELEVWNKAEKQLEASL-NSFGEPWTENPGDGAFYGPKIDITITDALKRPH- 261
P L LE SL N+ G P P + I+ L +
Sbjct: 312 EAYPNTSL--------PPSILEDSLENNEGVP-----------SPMLSIS---NLTQEQV 349
Query: 262 QCATIQLDFQLPI--RFNLAYVNEKGEKNRPVMIHRAILG---SVERMVAILTESYAG-- 314
Q + + LP + ++ VN G KN V + G S+ + L ++ A
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVN--GAKNL-V-----VSGPPQSLYGLNLTLRKAKAPSG 401
Query: 315 ----KWPFWISPRQGIVI-----PVAEPFN-EYADQVKNKIFAAGFMCDADLDSSDTLNK 364
+ PF S R+ + PVA PF+ + I + ++ D +
Sbjct: 402 LDQSRIPF--SERK-LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-I-- 455
Query: 365 KIRNAQISQYNFIMVVGEKEKSSNTVNVRT-RDNIVHGEFSVDDVITR 411
QI Y+ + + ++R +I + D I R
Sbjct: 456 -----QIPVYD----------TFDGSDLRVLSGSISE---RIVDCIIR 485
Score = 37.7 bits (87), Expect = 0.008
Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 70/256 (27%)
Query: 215 EVWNKAEKQLEASLN-SFGEPWTENPGDGAFY-----GPKI-----DITITDALKRPHQC 263
+VWN+A+ + + S + NP + + G +I + + +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 264 ATI--QLDFQLPIRFNLAYVNEKGEKNR-----PVM--IHRAIL------GSVERMVAI- 307
I +++ + + +EKG + P + + +A G +
Sbjct: 1704 EKIFKEINEHST---SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 308 ---LTE-----SYAGKWPF-----WISPRQGIVIPVAEPFNEYADQ------VKNKIFAA 348
L E S A + R G+ + VA P +E + AA
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 349 GFMCDADLDSSDTLNKKIRNA-----QISQYNF----IMVVGEK---EKSSNTVNVRTRD 396
F ++ + +++ +I YN + G+ + +N +N
Sbjct: 1820 SF----SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 397 NI----VHGEFSVDDV 408
I + S+++V
Sbjct: 1876 KIDIIELQKSLSLEEV 1891
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 42.3 bits (99), Expect = 2e-04
Identities = 34/297 (11%), Positives = 78/297 (26%), Gaps = 66/297 (22%)
Query: 61 LVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFS----------------- 103
+ + + +R+ G + + P V + + SG+ + +
Sbjct: 69 RLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSR 128
Query: 104 --------FDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALT 155
+ L P C + LR R E
Sbjct: 129 FDAGGDWTTSLSPADLVLSPAACY-PVYPIAASRGPLPKGGLRFDVAADCFRRE---PSK 184
Query: 156 GLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTRPEKYLGELE 215
L R++ F+ + T + + D + + + G TF + ++ P
Sbjct: 185 HLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDP-------- 236
Query: 216 VWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD-ALKRPHQCATI--QLDFQL 272
FG K ++ I + ++P C + +
Sbjct: 237 --------------FFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHF- 281
Query: 273 PIRFNLAYVNEKGEKNRPVMIHRAILG-SVERMVAILTESYA---GKWPFWISPRQG 325
+ + + P H + ++R+ + ++ WP + G
Sbjct: 282 GTTWGI-----QDANGEPA--HTGCVAFGMDRLAVAMFHTHGTDLSAWPAKVRDILG 331
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline
+ tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A
{Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
PDB: 1h4q_A* 1h4t_A 1h4s_A
Length = 477
Score = 41.6 bits (98), Expect = 4e-04
Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 14/183 (7%)
Query: 242 GAFYGPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSV 301
GA Y I+ + K + L F++ + + + G
Sbjct: 207 GAVYTTTIE-ALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTS---WGLS 262
Query: 302 ERMVAILTESYAG----KWPFWISPRQGIVIPVA-----EPFNEYADQVKNKIFAAGFMC 352
R + + ++ P ++P Q +++P+ E E A ++ + A G
Sbjct: 263 WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRV 322
Query: 353 DADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRF 412
D T K ++ F + +G K+ + +R + +
Sbjct: 323 HLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKE-TLPLAALPEAL 381
Query: 413 GKL 415
Sbjct: 382 PGK 384
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 40.7 bits (96), Expect = 7e-04
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSD 360
+V +L E P +VIP E +A V ++ AG D LD
Sbjct: 342 DCVIVELLQE--KRLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILD--- 396
Query: 361 TLNKKIRNAQISQYN-----FIMVVGEKEKSSNTVNVR 393
KK+ + + ++V +E V V+
Sbjct: 397 --KKKVV-QAFNYADRVGAVRAVLVAPEEWERGEVQVK 431
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 39.2 bits (92), Expect = 0.002
Identities = 19/119 (15%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 301 VERMVAILTESYAGKWPFWI-SPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSS 359
+ R+++ L + AG +P Q +V+ + + +V ++ AG + +
Sbjct: 351 LTRLISRLLK--AGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKR 408
Query: 360 DTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE---FSVDDVITRFGKL 415
L K+ + A F +++G E ++ +++ ++ GE ++ D+ +
Sbjct: 409 Q-LGKQFQAADKQGIRFCVIIGADEAAAQKSSLK---DLQSGEQVEVALADLAEEIKRR 463
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 37.9 bits (89), Expect = 0.005
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 65 IRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSF-DVENETYALKPMNCPGH-- 121
+R E+ K E++ P + +LW+ SG + Y N++ D + Y L P H
Sbjct: 57 MREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPT----HEE 112
Query: 122 --CLIFDHRVRSWRELPL 137
+ + S++ LPL
Sbjct: 113 TFTELIRDEINSYKRLPL 130
Score = 34.8 bits (81), Expect = 0.056
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 48/173 (27%)
Query: 276 FNLAYVNEKGEKNRPVMIHRAILGS----VERMVAILTESYA---G-KWPFWISPRQGIV 327
++E G + +M G V R+++ + E A G WP I+P V
Sbjct: 422 MGATVLDENGREKSVIM------GCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHV 475
Query: 328 IPVA---EPFNEYADQVKNKIFAAGF--------------MCDADLDSSDTLNKKIRNAQ 370
+ + E + + +V+ + AG+ DADL
Sbjct: 476 VQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADL-------------- 521
Query: 371 ISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRF-GKLKENRTLK 422
I + VG+K V V+ + E +++ + + ++
Sbjct: 522 IG-CPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELESTLSILMNTTSEVE 572
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 35.4 bits (82), Expect = 0.028
Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 17/184 (9%)
Query: 242 GAFYGPKIDITITDALKRPHQCATIQLDFQ-LPIRFNLAYVNEKGEKNRPVMIHRAILGS 300
GA Y D D R Q AT+ Q F + + G+K ++ G
Sbjct: 202 GAEYTMAFDTIFPD--GRTMQIATVHNLGQNFSKTFEIIFETPTGDK---DYAYQTCYGI 256
Query: 301 VERMVAILTESYA---G-KWPFWISPRQGIVIPVA-----EPFNEYADQVKNKIFAAGFM 351
+R++A + + G P ++P Q +++P+ + E A ++ K+ F
Sbjct: 257 SDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKL-KGKFR 315
Query: 352 CDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITR 411
D D +K + +I + VG K+ + + + RD + + ++
Sbjct: 316 VHID-DRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEV 374
Query: 412 FGKL 415
K
Sbjct: 375 VEKT 378
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, RS, translation, ATP-binding,
nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia
atcc 50803}
Length = 518
Score = 34.4 bits (79), Expect = 0.070
Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 21/181 (11%)
Query: 242 GAFYGPKIDITITDALKRPHQCATIQLDFQLPIR-FNLAYVNEKGEKNRPVMIHRAILGS 300
GA Y D+ + R Q A I Q F++ Y N+ E V + G
Sbjct: 219 GADYSEVSDVVMPC--GRVLQTAGIHNLGQRFSSTFDILYANKANES---VHPYLTCAGI 273
Query: 301 VERMVAILTESYA---G-KWPFWISPRQGIVIPVA----------EPFNEYADQVKNKIF 346
R++A + G P I+P ++IP+ + +++ + +
Sbjct: 274 STRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLK 333
Query: 347 AA-GFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSV 405
+ G D D S ++ K+ ++ + VG+++ ++ V RD + +
Sbjct: 334 SKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVI 393
Query: 406 D 406
Sbjct: 394 P 394
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 34.1 bits (78), Expect = 0.096
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 101 MF------SFDVENETYALKPMNCPGHCLIFDHRVRS-WRELPLRMADFGVLHRNELSGA 153
MF Y L+P G + F + + + R+L +A G RNE++
Sbjct: 168 MFQDLRGPRGGRGLLAY-LRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-P 225
Query: 154 LTGLTRVRRFQQDDAHIFC 172
+ RVR F+Q + F
Sbjct: 226 RNFIFRVREFEQMEIEYFV 244
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 33.7 bits (78), Expect = 0.12
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSD 360
+ +L + + V + + ++ K+ G ++
Sbjct: 314 DAVISLLLKR--ENVQIP-REKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMER- 369
Query: 361 TLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE---FSVDDVITRF 412
L+ +++ A +F ++ GE++ V +R N+ G +D V+
Sbjct: 370 GLSAQLKYASAIGADFAVIFGERDLERGVVTIR---NMYTGSQENVGLDSVVEHL 421
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 32.7 bits (74), Expect = 0.23
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 101 MFSFDV---ENETYALKPMNCPGHCLIFDHRVRSWRE-LPLRMADFGVLHRNELSGALTG 156
MF + N L+P G L F + + LP A G RNE+S +G
Sbjct: 227 MFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEIS-PRSG 285
Query: 157 LTRVRRFQQDDAHIFC 172
L RVR F + F
Sbjct: 286 LIRVREFTMAEIEHFV 301
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 32.5 bits (75), Expect = 0.24
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSD 360
+ER++ L E G ++ + + + YA ++ N + G D D
Sbjct: 310 IERLLLALEE--EGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQR- 366
Query: 361 TLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE---FSVDDVITRFGK 414
+ +++ A F +V+G++E +N ++V+ N+ GE +D ++ F K
Sbjct: 367 KIKGQMKQADRLGAKFTIVIGDQELENNKIDVK---NMTTGESETIELDALVEYFKK 420
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center
for structural genomics of infec diseases, NADE, CSGI;
2.74A {Campylobacter jejuni}
Length = 249
Score = 30.6 bits (70), Expect = 0.91
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 57 IYNTLVEFIRSEYRKRGFQEVV 78
I + +FI+ + + Q VV
Sbjct: 9 ITEKMCDFIQEKVKNSQSQGVV 30
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 29.8 bits (68), Expect = 1.5
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 11/120 (9%)
Query: 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKI--FAAGFMCDADLDS 358
+ER+V ++ ++ A + ++ G +
Sbjct: 308 LERLVLLVQA--VNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNH-G 364
Query: 359 SDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE---FSVDDVITRFGKL 415
K+ A +V+GE E ++ T V+ ++ GE + D V L
Sbjct: 365 GGNFKKQFARADKWGARVAVVLGESEVANGTAVVK---DLRSGEQTAVAQDSVAAHLRTL 421
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 29.4 bits (67), Expect = 2.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 55 AFIYNTLVEFIRSEYRKRGFQEVV 78
Y+ ++E I R++G VV
Sbjct: 3 ILDYDKVIERILEFIREKGNNGVV 26
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ
hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP:
c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A
1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A*
1z88_A 2aut_A
Length = 211
Score = 28.3 bits (62), Expect = 4.5
Identities = 12/116 (10%), Positives = 25/116 (21%), Gaps = 23/116 (19%)
Query: 288 NRPVMIHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIF- 346
+ P S E + + K I VA + + + IF
Sbjct: 51 SSPGFWRGKKTFSPESEDYLKNPVFWEKMN-NGWDEFSIPKEVARQLIDMHVRRGDAIFF 109
Query: 347 ------------------AAGFMCDAD---LDSSDTLNKKIRNAQISQYNFIMVVG 381
+ + D + ++ + N + G
Sbjct: 110 VTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYG 165
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely
alpha-helical, C-terminal domain M beta-sheet
(trefoil-like); 2.49A {Shewanella oneidensis} SCOP:
c.8.2.2 d.334.1.1
Length = 628
Score = 27.9 bits (63), Expect = 7.7
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 18/79 (22%)
Query: 293 IHRAILGSVERMVAILTESYAGKWPF--WISPRQGIV------IPVAEPFNEYADQVKNK 344
+HR+ L + K GI+ + +P+ Y D +K
Sbjct: 55 VHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSAHQPYETYPDLLKKA 114
Query: 345 IFAAG-----F-----MCD 353
G MCD
Sbjct: 115 CQEVGSVAQVAGGVPAMCD 133
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 27.5 bits (62), Expect = 9.4
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 30/128 (23%)
Query: 301 VERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYA----DQVKNKIFA------AGF 350
VER+ L +G +P + + Y ++ + F
Sbjct: 309 VERVALALEA-------------EGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPRL 355
Query: 351 MCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGE---FSVDD 407
+ L K + A F +GE E + V ++ + GE S ++
Sbjct: 356 RAEYALAPR-KPAKGLEEALKRGAAFAGFLGEDELRAGEVTLK---RLATGEQVRLSREE 411
Query: 408 VITRFGKL 415
V +
Sbjct: 412 VPGYLLQA 419
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A
{Streptomyces coelicolor}
Length = 152
Score = 26.7 bits (59), Expect = 9.6
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENM 101
I + L E + G + + V L ++ WA Y +
Sbjct: 110 VIADRLAERVHKGALGEGARGL---AGLTVTLHESHVAWASYERAL 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,649,105
Number of extensions: 400519
Number of successful extensions: 889
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 46
Length of query: 426
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,021,377
Effective search space: 1327054410
Effective search space used: 1327054410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)