RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10612
(426 letters)
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 306 bits (785), Expect = e-103
Identities = 144/287 (50%), Positives = 194/287 (67%), Gaps = 1/287 (0%)
Query: 29 RKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW 88
RKIG++ +L+ E +PG F+ G I+ L F+RS+ ++ +QEV P + + LW
Sbjct: 4 RKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLW 63
Query: 89 QTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRN 148
+ +GHW +Y + MF+ EN Y +KPMNCPGH IF+ ++S+R+LPLRMA+FG HRN
Sbjct: 64 EKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRN 123
Query: 149 ELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLSTRP 207
E SG+L GL RVR F QDDAHIFCT EQI DE+ G + + ++YS FGF ++LSTRP
Sbjct: 124 EPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRP 183
Query: 208 EKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATIQ 267
EK +G E+W++AE L +L P+ G+GAFYGPKI+ T+ D L R QC T+Q
Sbjct: 184 EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQ 243
Query: 268 LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAG 314
LDF LP R + +YV E E+ PVMIHRAILGS+ER + ILTE +AG
Sbjct: 244 LDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG 290
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 260 bits (664), Expect = 4e-85
Identities = 119/289 (41%), Positives = 178/289 (61%), Gaps = 8/289 (2%)
Query: 29 RKIGREQELFFFHEL-SPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKL 87
RKIG+E ELF +L G + GA I + +I + G+ V +P + NV L
Sbjct: 3 RKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDL 62
Query: 88 WQTSGHWAHYSENMFSFDVEN--ETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 145
++TSGHW HY E+MF + E+ L+PMNCP H +I+ ++ S+RELP+R+A+ G +
Sbjct: 63 YKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTM 122
Query: 146 HRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFT-FNLRLS 204
HR E SGA++GL RVR +D+HIF +QI +E ++ + +VY FGF ++ RLS
Sbjct: 123 HRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLS 182
Query: 205 TR----PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRP 260
R EKY + ++WNKAE L+ + + G + E G+ AFYGPK+D+ + A+ +
Sbjct: 183 YRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKE 242
Query: 261 HQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILT 309
+T QLDF LP RF+L Y+ + GE +RPV+IHR ++ ++ER VA LT
Sbjct: 243 ETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLT 291
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 138 bits (349), Expect = 2e-38
Identities = 39/309 (12%), Positives = 78/309 (25%), Gaps = 57/309 (18%)
Query: 29 RKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLW 88
G Q+L LS F G + L S ++V + + + +
Sbjct: 12 FLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSM-VVFREQVFAVDSLHQEPG 70
Query: 89 QTSGHWAHYSEN--------------------MFSFDVENETYALKPMNCPGHCLIFDHR 128
+ + + F ++ + L+ G + +
Sbjct: 71 SSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNC 130
Query: 129 VRS-WRELPLRMADFGVLHRNELSGALTG--LTRVRRFQQDDAHIFCTVEQIGDEIVGAL 185
+ R+LP +A GV + T +TRV + F + L
Sbjct: 131 LDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWL 190
Query: 186 DFLRNVYSIFGFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFY 245
+ F P + K + + PW + P + +
Sbjct: 191 RHRLLWWRKFAM--------SPSNFSSADCQDELGRKGSKL---YYSFPWGKEPIETLWN 239
Query: 246 GPKIDITITDALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKN-RPVMIHRAILGSVERM 304
++ G KN P ++ + V+
Sbjct: 240 LGDQEL------------------LHTYPGNVSTIQGRDGRKNVVPCVLSVSG--DVDLG 279
Query: 305 V-AILTESY 312
A L +S+
Sbjct: 280 TLAYLYDSF 288
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 134 bits (338), Expect = 2e-36
Identities = 40/288 (13%), Positives = 81/288 (28%), Gaps = 37/288 (12%)
Query: 53 KGAFIYNTLVEFIRSE--YRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFD----- 105
G + N L + Y + + + + + + + SGH A +++ M
Sbjct: 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYW 96
Query: 106 -------------------VENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLH 146
Y + + R+L +A G
Sbjct: 97 TPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAF 156
Query: 147 RNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLRLSTR 206
RNE++ + RVR F+Q + F + ++ + G + R
Sbjct: 157 RNEIT-PRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLS-------R 208
Query: 207 PEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQCATI 266
+ + A + P +G D+ +
Sbjct: 209 ENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITAR 268
Query: 267 QLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMV-AILTESYA 313
L + + E G+ P +I + V+R V A+L E++
Sbjct: 269 VLRNEHSTQRLAYRDPETGKWFVPYVIEPSA--GVDRGVLALLAEAFT 314
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 121 bits (304), Expect = 2e-32
Identities = 41/298 (13%), Positives = 85/298 (28%), Gaps = 43/298 (14%)
Query: 24 FVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 83
F W I + E++ G + G I E IR+ + G E + P +
Sbjct: 4 FSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLI 63
Query: 84 NVKLWQTSGHWAHYSENMFSFD------VENETYALKPMNCPGHCLIFDHRVRSWRELPL 137
L E+ + + AL+P + + V+ +LP+
Sbjct: 64 PEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPI 123
Query: 138 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCTVEQIGDEIVGALDFLRNVYSIFG 196
++ R E + +AH T E+ +++ A+ + + G
Sbjct: 124 KIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLG 183
Query: 197 FTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDA 256
+ + +K +
Sbjct: 184 IPYLISKRPEWDK--------------------------------FPGAEYTMAFDTIFP 211
Query: 257 LKRPHQCATI-QLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYA 313
R Q AT+ L F + + G+K+ ++ G +R++A + +
Sbjct: 212 DGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYA---YQTCYGISDRVIASIIAIHG 266
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 109 bits (272), Expect = 7e-28
Identities = 43/298 (14%), Positives = 95/298 (31%), Gaps = 43/298 (14%)
Query: 24 FVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 83
F W ++ ++ EL + + G+ + G I+ + + + +++ G Q P
Sbjct: 10 FSEWYLEVIQKAELADYGPVR-GTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFI 68
Query: 84 NVKLWQTSG-HWAHYSENMFSFDVE-----NETYALKPMNCPGHCLIFDHRVRSWRELPL 137
+ + H +S + E A++P + ++ +RSWR+LP
Sbjct: 69 PMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQ 128
Query: 138 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGF 197
+ +G + R E+ T +Q+ E
Sbjct: 129 LLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEA--------------------- 167
Query: 198 TFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDAL 257
E+ L ++ + ++ A G + GA Y I+ + D
Sbjct: 168 ---------EEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKD-- 216
Query: 258 KRPHQCATIQ-LDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESYAG 314
+ Q T L F++ + + + +H G R + + ++
Sbjct: 217 GKALQAGTSHYLGENFARAFDIKFQDRDLQV---KYVHTTSWGLSWRFIGAIIMTHGD 271
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 98.0 bits (243), Expect = 7e-24
Identities = 46/297 (15%), Positives = 93/297 (31%), Gaps = 44/297 (14%)
Query: 24 FVLWNRKIGREQELFFFHELSPGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVY 83
F W I E E+ G + G I ++ +R R +EV+ P +
Sbjct: 2 FSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILR-RILDRDHEEVLFPLLV 60
Query: 84 NVK-LWQTSGHWAHYSENMF-----SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPL 137
L + + H + + ++ AL+P + +F VRS +LP+
Sbjct: 61 PEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPM 120
Query: 138 RMADFGVLHRNELSGALTGLTRVRRF--QQDDAHIFCTVEQIGDEIVGALDFLRNVYSIF 195
R R E + L RVR ++ I T + +++ A++ + ++
Sbjct: 121 RFYQVVNTFRYE-TKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSL 179
Query: 196 GFTFNLRLSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITD 255
G + + W+K P + G +
Sbjct: 180 GIPY----------LITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVH---------- 219
Query: 256 ALKRPHQCATIQLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY 312
L F + + +G+ +H+ G +R++A + +
Sbjct: 220 -----------NLGQTFARTFEIKFETPEGDH---EYVHQTCYGLSDRVIASVIAIH 262
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 110
Score = 87.8 bits (217), Expect = 8e-22
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 316 WPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYN 375
+P W++P Q +++ + + +EY +++ K+ AG AD ++ + KIR + +
Sbjct: 1 FPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKAD-LRNEKIGFKIREHTLRRVP 59
Query: 376 FIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKENRTLKSEE 425
+++V G+KE S V VRTR G V++VI + + +R+LK E
Sbjct: 60 YMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE 109
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 113
Score = 77.8 bits (191), Expect = 3e-18
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 310 ESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNA 369
E G +P W++P+Q +IPV + + + + + D ++ + KIR A
Sbjct: 1 EETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREA 60
Query: 370 QISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFG---KLKENR 419
Q+ + + +VVG+KE +N VNVR + D+ I +LK++R
Sbjct: 61 QMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR 113
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, C-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 127
Score = 68.2 bits (166), Expect = 1e-14
Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Query: 315 KWPFWISPRQGIVIPVA---EPFNEYADQVKNKIFAAGFMCDADLD--SSDTLNKKIRNA 369
K ++P + + + + N++ G +L +
Sbjct: 5 KLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKY 64
Query: 370 QISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKL 415
F ++V E + + +R+RD + + + K
Sbjct: 65 DEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKY 110
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 62.2 bits (151), Expect = 6e-13
Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 326 IVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEK 385
++ + + + YA ++ N + G D D + +++ A F +V+G++E
Sbjct: 8 FIVTMGDQADRYAVKLLNHLRHNGIKADKD-YLQRKIKGQMKQADRLGAKFTIVIGDQEL 66
Query: 386 SSNTVNVRTRDNIVHGEFSVDDVITRFGK 414
+N ++V+ +D ++ F K
Sbjct: 67 ENNKIDVKNMTTGESETIELDALVEYFKK 95
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 64.0 bits (155), Expect = 5e-12
Identities = 40/291 (13%), Positives = 84/291 (28%), Gaps = 39/291 (13%)
Query: 29 RKIGREQELFFFH--ELS-PGSCFFQTKGAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNV 85
+ + + ++S S + A L+ F +RGF + P+
Sbjct: 27 VALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYARE 86
Query: 86 KLWQTSGHWAHYSENMFSFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVL 145
K + +GH+ Y + ++ + L + + + LPLR A +
Sbjct: 87 KAFLGTGHFPAYRDQVW--AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPA 144
Query: 146 HRNELSGA---LTGLTRVRRFQQDDAHIFCTVEQIGDEIVGALDFLRNVYSIFGFTFNLR 202
R+E + GL RV +F + + ++
Sbjct: 145 FRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASL-------------------------- 178
Query: 203 LSTRPEKYLGELEVWNKAEKQLEASLNSFGEPWTENPGDGAFYGPKIDITITDALKRPHQ 262
+ + N E L + + R +
Sbjct: 179 ---EASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRE 235
Query: 263 CATI-QLDFQLPIRFNLAYVNEKGEKNRPVMIHRAILGSVERMVAILTESY 312
+ L R NL Y + +G ++ + R++A+L E++
Sbjct: 236 THSCSALLDWQARRANLRYRDPEGRVRYAYTLN-NTALATPRILAMLLENH 285
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 127
Score = 59.0 bits (142), Expect = 2e-11
Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 315 KWPFWISPRQGIVIPV-----AEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNA 369
P ++ Q +++P+ AE E ++++++ AAGF D D +K
Sbjct: 4 CLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLD-DRDIRAGRKYYEW 62
Query: 370 QISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKEN 418
++ + +G ++ + RD + + +L ++
Sbjct: 63 EMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKD 111
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain
{Thermus thermophilus [TaxId: 274]}
Length = 127
Score = 58.6 bits (141), Expect = 3e-11
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 315 KWPFWISPRQGIVIPV-----AEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNA 369
P ++P Q +++P+ E E A ++ + A G D T K
Sbjct: 4 VLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEW 63
Query: 370 QISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKEN 418
++ F + +G K+ + +R + + +
Sbjct: 64 ELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPGKLDA 111
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 96
Score = 57.7 bits (139), Expect = 3e-11
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 327 VIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGEKEKS 386
+IP+ E A + + + + K + A F +GE E
Sbjct: 8 LIPLTEEAVAEAFYLAEALR-PRLRAEYA-LAPRKPAKGLEEALKRGAAFAGFLGEDELR 65
Query: 387 SNTVNVRTRDNIVHGEFSVDDVITRFGKL 415
+ V ++ S ++V +
Sbjct: 66 AGEVTLKRLATGEQVRLSREEVPGYLLQA 94
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 54.6 bits (131), Expect = 3e-10
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 327 VIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSD-TLNKKIRNAQISQYNFIMVVGEKEK 385
++ A + ++ + K+ A +V+GE E
Sbjct: 8 LVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV 67
Query: 386 SSNTVNVRTRDNIVHGEFSVDDVITRFGKL 415
++ T V+ + + D V L
Sbjct: 68 ANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 97
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 111
Score = 53.9 bits (129), Expect = 9e-10
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 320 ISPRQGIVIPVA---EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNF 376
++P + VIP+ EYA ++K ++ A G + + + K R F
Sbjct: 2 LAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLY-EDTGNIGKAYRRHDEVGTPF 60
Query: 377 IMVVGEKE---------KSSNTVNVRTRDNIVHGEFSVDDVITRFGKL 415
+ V + +TV VR RD + VD++ +
Sbjct: 61 AVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRER 108
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 126
Score = 54.3 bits (130), Expect = 9e-10
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 315 KWPFWISPRQGIVIPVA-----EPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNA 369
P ++P Q +++P+ + E A ++ K+ F D D +K +
Sbjct: 4 ILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLK-GKFRVHID-DRDIRPGRKFNDW 61
Query: 370 QISQYNFIMVVGEKEKSSNTVNVRTRDNIVHGEFSVDDVITRFGKLKEN 418
+I + VG K+ + + + RD + + ++ K N
Sbjct: 62 EIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 110
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 49.6 bits (118), Expect = 2e-08
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 323 RQGIVIPVAEPFNEYADQVKNKIFAAGFMCDADLDSSDTLNKKIRNAQISQYNFIMVVGE 382
+ + V + + ++ K+ G + L+ +++ A +F ++ GE
Sbjct: 4 KSVYICRVGKINSSIMNEYSRKLRERGMNVTVE-IMERGLSAQLKYASAIGADFAVIFGE 62
Query: 383 KEKSSNTVNVRTRDNIVHGEFSVDDVITRF 412
++ V +R +D V+
Sbjct: 63 RDLERGVVTIRNMYTGSQENVGLDSVVEHL 92
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 43.5 bits (101), Expect = 3e-05
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 54 GAFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTS--GHWAHYSENMFSF-DVENET 110
+ +R + + +QEV+ P+ +L+ E MF F E ++
Sbjct: 14 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQS 73
Query: 111 YALKPMNCPGHCLIFDHRVRSW 132
L+ ++ S
Sbjct: 74 ITLRYDFTLPLVRLYSQIKDST 95
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 31.9 bits (71), Expect = 0.12
Identities = 10/99 (10%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQT----SGHWAHYSENMFSFDVENET 110
+ + + + ++E+ +P + L+ S F +
Sbjct: 16 SKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSI 75
Query: 111 YALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 149
+H+++ P+++ G + R E
Sbjct: 76 TLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE 114
>d2a0sa1 d.96.1.2 (A:18-180) 6-pyruvoyl tetrahydropterin synthase
{Plasmodium vivax [TaxId: 5855]}
Length = 163
Score = 29.3 bits (65), Expect = 0.57
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 56 FIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENM 101
+I N L+E I + K + V + ++ A N+
Sbjct: 123 YILNQLIEEIDLPFLKTRSVNYME-----VTVSESPSQKATVHRNI 163
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 27.4 bits (59), Expect = 3.6
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 55 AFIYNTLVEFIRSEYRKRGFQEVVSPNVYNVKLWQTSGHWAHYSENMFSFDVENETYALK 114
+ + + GF+ + P++ + L+ + +SF +
Sbjct: 18 MDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLY-RIKSGEELLQQTYSFVDKGGREVTL 76
Query: 115 PMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNE 149
+ R + PLR F + R E
Sbjct: 77 IPEATPST-VRMVTSRKDLQRPLRWYSFPKVWRYE 110
>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 26.0 bits (57), Expect = 4.6
Identities = 5/53 (9%), Positives = 13/53 (24%), Gaps = 6/53 (11%)
Query: 103 SFDVENETYALKPMNCPGHCLIFDHRVRSWRELPLRMADFGVLHRNELSGALT 155
V+ K C ++ R+W + ++ +
Sbjct: 12 QMKVKGSNTTYKD------CKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVE 58
>d2hnga1 d.33.1.2 (A:5-128) Hypothetical protein SP1558
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 124
Score = 25.5 bits (56), Expect = 6.6
Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 339 DQVKNKIFAAGFMCDA-DLDSSDTLNKKIRNAQISQYNFIMVVGEKEKSSNTVNVRTRDN 397
+ + + F + + DA + + + + NF ++ ++E ++ V
Sbjct: 2 NLKREQEFVSQYHFDARNFEWENENGAPETKVDV---NFQLLQHDQENQVTSLIVILSFM 58
Query: 398 IVHGEFSVDDVITRFGKLK 416
IV +F + I++ +
Sbjct: 59 IVFDKFVISGTISQVNHID 77
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 25.7 bits (56), Expect = 8.9
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 293 IHRAILGSVERMVAILTESYAGKWPFWISPRQGIVIPVAEPFNEYADQVKNKIFAAGFMC 352
+ + + + ++T Y GK I +G ++ ++ + A
Sbjct: 16 LKAKV----KELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYG 71
Query: 353 DADLDSSDTLNKKIRNAQISQYNFIMVVG 381
+ S K + I + ++V
Sbjct: 72 SSTKSSGIVKIIKDHDIDIEGKDVLIVED 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,643,872
Number of extensions: 77632
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 33
Length of query: 426
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,199,356
Effective search space: 405382328
Effective search space used: 405382328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)